Query psy16729
Match_columns 238
No_of_seqs 119 out of 1198
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:30:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 97.6 0.0011 3.7E-08 60.0 14.6 83 3-88 212-306 (511)
2 3l1l_A Arginine/agmatine antip 97.4 0.0012 4.2E-08 58.5 11.5 157 2-166 201-379 (445)
3 3gia_A Uncharacterized protein 97.2 0.002 6.9E-08 57.2 10.1 50 2-54 198-248 (444)
4 3dh4_A Sodium/glucose cotransp 49.4 1.5E+02 0.005 26.6 12.4 11 43-53 273-283 (530)
5 4b4a_A TATC, SEC-independent p 30.3 2.1E+02 0.0073 23.0 14.1 95 68-163 58-175 (249)
6 1afo_A Glycophorin A; integral 26.4 94 0.0032 17.6 4.2 25 179-203 12-36 (40)
7 2xq2_A Sodium/glucose cotransp 26.3 3.6E+02 0.012 24.3 9.9 45 121-166 406-450 (593)
8 4b4a_A TATC, SEC-independent p 24.5 2.8E+02 0.0094 22.3 9.9 57 69-133 148-204 (249)
9 2jln_A MHP1; hydantoin, transp 20.3 4.5E+02 0.015 23.2 13.9 14 10-23 226-239 (501)
10 3kp9_A Vkorc1/thioredoxin doma 11.0 1.3E+02 0.0046 24.8 2.5 34 177-215 19-52 (291)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.64 E-value=0.0011 Score=60.03 Aligned_cols=83 Identities=8% Similarity=0.014 Sum_probs=55.5
Q ss_pred cccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh----------hhhhCCC-CCCc
Q psy16729 3 NGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED----------NITYNLP-QHEI 70 (238)
Q Consensus 3 ~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~----------~il~n~~-~~~~ 70 (238)
|+|.|.......-+|+|||+ +.++ ....+..++.++|....+.-....+++... .+..+.. ...+
T Consensus 212 ~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 288 (511)
T 4djk_A 212 LSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEW 288 (511)
T ss_dssp HHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTT
T ss_pred HHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchH
Confidence 67889999999999999997 4666 577899999999999888777666643211 1112222 0234
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy16729 71 APQIANIAIGIAVFCTFG 88 (238)
Q Consensus 71 ~~~i~~i~~~i~ll~s~p 88 (238)
...+..+...+..+.+.-
T Consensus 289 ~~~~~~~~~~~~~~~~~~ 306 (511)
T 4djk_A 289 TVRVISALLLLGVLAEIA 306 (511)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666665555533
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=97.41 E-value=0.0012 Score=58.53 Aligned_cols=157 Identities=8% Similarity=0.001 Sum_probs=85.4
Q ss_pred CcccccceeeccchhhcCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCchh-------hhhhCCCCCCcHHH
Q psy16729 2 ANGHLPDSQVMPLENNMQTPN-HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTED-------NITYNLPQHEIAPQ 73 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~-~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~~~~~-------~il~n~~~~~~~~~ 73 (238)
.|+|.|........+|+|||+ +.++ ....+..++.++|...........+.+... ++.+... .++...
T Consensus 201 ~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~ 276 (445)
T 3l1l_A 201 LWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGA 276 (445)
T ss_dssp HHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHH
T ss_pred HHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHH
Confidence 368899999999999999995 5666 467899999999999988777766643211 0111111 123334
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhhcc-CC----C---cchhHHHHHHHHHHHHHHHHHH--hc----CChhHHH
Q psy16729 74 IANIAIGIAVFCTFGLQFFVCLEIVWNGVKDN-FV----K---KPKFYEYIVRTVIVTAAVGLAV--AV----PTIGPFL 139 (238)
Q Consensus 74 i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~-~~----~---~~~~~~~~~r~~i~~~~~~lAi--~i----P~~~~v~ 139 (238)
+..+...+..+.+.--.+....+.+...-+++ .| + +....+.++-...+ +.++.+ .. ..++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 354 (445)
T 3l1l_A 277 IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGIL--MTIFQLSSISPNATKEFGLVS 354 (445)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHH--HHHHHHSTTSHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHH--HHHHHHHHHcccHHHHHHHHH
Confidence 44444444444443333333334443333221 12 1 11112222111111 222222 12 2355565
Q ss_pred hHhhhHHhhHHHHHHhHHHHHHHhccC
Q psy16729 140 GLIGAFCFSLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 140 ~lvGa~~~~~l~fi~P~l~yl~~~~~~ 166 (238)
++.+ ....+.|.++++.++++++++
T Consensus 355 ~~~~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 355 SVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 5554 335688999999999887665
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.17 E-value=0.002 Score=57.15 Aligned_cols=50 Identities=6% Similarity=0.028 Sum_probs=40.8
Q ss_pred CcccccceeeccchhhcCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHHhc
Q psy16729 2 ANGHLPDSQVMPLENNMQTPNH-FVGLCGVLNQGMGGVTMIYILLGFLGYLKYG 54 (238)
Q Consensus 2 ~~af~g~~~~~~i~~~mk~p~~-~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG 54 (238)
.|+|.|........+|+|||+| .++ ....+..++.++|...........+
T Consensus 198 ~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 198 FLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp GGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999974 676 4678999999999988776555444
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=49.36 E-value=1.5e+02 Score=26.61 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.1
Q ss_pred HHHHHHHHHHh
Q psy16729 43 ILLGFLGYLKY 53 (238)
Q Consensus 43 ~~~g~~gY~~f 53 (238)
...|..++..+
T Consensus 273 ~~~Gl~a~~~~ 283 (530)
T 3dh4_A 273 VLPGIAAYVIT 283 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45577777666
No 5
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=30.29 E-value=2.1e+02 Score=22.97 Aligned_cols=95 Identities=5% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHh----------------
Q psy16729 68 HEIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVA---------------- 131 (238)
Q Consensus 68 ~~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~---------------- 131 (238)
.+....-.++....+++.+.|+..+-.-..+...+.++.++ ...........+...-...+.+
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err-~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~ 136 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKR-AFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFT 136 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTT-TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 46778889999999999999998876655555544433221 1112222333333333333331
Q ss_pred ----cC--ChhHHHhHhhhHH-hhHHHHHHhHHHHHHHh
Q psy16729 132 ----VP--TIGPFLGLIGAFC-FSLLGLIFPVLIEFVTY 163 (238)
Q Consensus 132 ----iP--~~~~v~~lvGa~~-~~~l~fi~P~l~yl~~~ 163 (238)
.| ++++-++++-.+. ..-++|-+|.++.+-.+
T Consensus 137 ~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 137 QLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp TSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred hhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14 6666666665543 33478899999887654
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=26.42 E-value=94 Score=17.59 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16729 179 ILVLIFGVLALVFGTQTSIGDIMRA 203 (238)
Q Consensus 179 ~~ii~~Gi~~~v~gt~~si~~ii~~ 203 (238)
..++++|+.++++|+...+.-.++.
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666555544
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=26.33 E-value=3.6e+02 Score=24.34 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhhHHhhHHHHHHhHHHHHHHhccC
Q psy16729 121 IVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFPVLIEFVTYWDV 166 (238)
Q Consensus 121 i~~~~~~lAi~iP~~~~v~~lvGa~~~~~l~fi~P~l~yl~~~~~~ 166 (238)
+.+++.++|....+.+.+++++....+....=++|.++ +.+.|++
T Consensus 406 ~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l-lglfwkr 450 (593)
T 2xq2_A 406 ALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL-LGLFWKK 450 (593)
T ss_dssp HHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH-HHHHCTT
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH-HHHHhCC
Confidence 33344455554455566666554443322222334332 3445554
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=24.45 E-value=2.8e+02 Score=22.31 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcC
Q psy16729 69 EIAPQIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVP 133 (238)
Q Consensus 69 ~~~~~i~~i~~~i~ll~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP 133 (238)
+....+.++...+.+.+-.|+.+.-. ... +-.+ . +..+.--|.+++....+-|+.-|
T Consensus 148 ~Yl~fv~~l~l~fGl~FelPvi~~~L-----~~~-Giv~-~-~~l~~~Rr~~iv~~~v~aAiiTP 204 (249)
T 4b4a_A 148 MYISFVLKLVVAFGIAFEMPIVLYVL-----QKA-GVIT-P-EQLASFRKYFIVIAFVIGAIIAP 204 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHH-----HHT-TSSC-H-HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHc-CCcC-H-HHHHHHhHHHHHHHHHHHHHHCC
Confidence 44556666777777777777665322 111 1111 1 11122234455555556677889
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.29 E-value=4.5e+02 Score=23.17 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=9.3
Q ss_pred eeccchhhcCCCCC
Q psy16729 10 QVMPLENNMQTPNH 23 (238)
Q Consensus 10 ~~~~i~~~mk~p~~ 23 (238)
..++..+.+|+|++
T Consensus 226 ~~~DysRy~~~~~~ 239 (501)
T 2jln_A 226 SIHDIVKECKVDPN 239 (501)
T ss_dssp TTHHHHTTBCCCTT
T ss_pred ccCcccccCCCCcc
Confidence 34566677777766
No 10
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=11.02 E-value=1.3e+02 Score=24.81 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCCCeeE
Q psy16729 177 KNILVLIFGVLALVFGTQTSIGDIMRAYMPPDSDLPVAI 215 (238)
Q Consensus 177 ~~~~ii~~Gi~~~v~gt~~si~~ii~~~~~~~~~~~~~~ 215 (238)
..+.+.++|+++.+.+.|.+.+++-. ..++.|.+
T Consensus 19 ~~~~~~~l~~iGl~~s~yLt~~~~~~-----~~~~~C~~ 52 (291)
T 3kp9_A 19 SRLILAILAGLGSLLTAYLTYTKLTE-----QPAAFCTG 52 (291)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHC-----CCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCCCCC
Confidence 34556677777777777777776642 24456664
Done!