Query psy16729
Match_columns 238
No_of_seqs 119 out of 1198
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 20:30:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16729.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16729hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 13.6 3E+02 0.022 22.0 13.5 50 96-146 357-406 (509)
2 d1ciya3 f.1.3.1 (A:33-255) del 6.5 1.8E+02 0.013 20.9 3.4 28 119-146 6-33 (223)
3 d1eh9a2 b.71.1.1 (A:491-557) G 4.4 1.1E+02 0.0082 17.8 0.6 17 216-232 36-52 (67)
4 d1rh5b_ f.23.28.1 (B:) Preprot 4.4 3.2E+02 0.023 15.2 2.7 16 38-53 30-45 (56)
5 d1v54d_ f.23.1.1 (D:) Mitochon 4.4 3.3E+02 0.024 18.2 3.4 42 12-55 62-103 (144)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 3.4 3.4E+02 0.025 13.5 2.9 16 148-163 11-26 (36)
7 d1q90b_ f.21.1.2 (B:) Cytochro 3.4 3.2E+02 0.023 19.5 2.7 35 15-55 104-138 (212)
8 d2qmsa1 d.93.1.1 (A:420-532) G 3.2 2.5E+02 0.018 17.5 1.6 23 195-217 84-106 (113)
9 d1qcfa2 d.93.1.1 (A:146-248) H 3.0 2.4E+02 0.018 17.0 1.5 21 194-214 75-95 (103)
10 d1qled_ f.23.8.1 (D:) Bacteria 3.0 4.1E+02 0.03 13.8 2.1 18 173-190 23-40 (43)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=13.56 E-value=3e+02 Score=22.02 Aligned_cols=50 Identities=8% Similarity=-0.034 Sum_probs=23.5
Q ss_pred HHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhcCChhHHHhHhhhHH
Q psy16729 96 EIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFC 146 (238)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lAi~iP~~~~v~~lvGa~~ 146 (238)
|.+-..+.++.+. ++.+...+..+...+...+....+..-+.++...+..
T Consensus 357 e~~v~~l~d~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 406 (509)
T d2a65a1 357 QPMIAFLEDELKL-SRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTI 406 (509)
T ss_dssp HHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTH
T ss_pred cchhHHHHHhcCC-chhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHH
Confidence 3333334444442 2233344444444444445556666555666555443
No 2
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=6.50 E-value=1.8e+02 Score=20.85 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHhHhhhHH
Q psy16729 119 TVIVTAAVGLAVAVPTIGPFLGLIGAFC 146 (238)
Q Consensus 119 ~~i~~~~~~lAi~iP~~~~v~~lvGa~~ 146 (238)
+.+-+...+++.++|..+.++++++-+.
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~~lw 33 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVDIIW 33 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHHHHc
Confidence 4555677888888999988877665443
No 3
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=4.45 E-value=1.1e+02 Score=17.76 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=13.4
Q ss_pred EecccccCCCCCCCCCC
Q psy16729 216 INGTLGLAGNASLPSNG 232 (238)
Q Consensus 216 ~~~~~~~~~~~~~~~~~ 232 (238)
++|++-++||+|.|.-=
T Consensus 36 y~G~LvlsSn~sFP~~I 52 (67)
T d1eh9a2 36 YSGTLLLSSNNSFPQHI 52 (67)
T ss_dssp CCCBCCEESSSCSCSBC
T ss_pred eccEEEEecCCcCchhh
Confidence 46888889999988753
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.44 E-value=3.2e+02 Score=15.17 Aligned_cols=16 Identities=31% Similarity=0.577 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16729 38 VTMIYILLGFLGYLKY 53 (238)
Q Consensus 38 ~~~~Y~~~g~~gY~~f 53 (238)
+.+=..++|+.||..+
T Consensus 30 ~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556677777654
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.42 E-value=3.3e+02 Score=18.20 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=24.0
Q ss_pred ccchhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16729 12 MPLENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGE 55 (238)
Q Consensus 12 ~~i~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~ 55 (238)
.+-+.||+.|+.-.+ .|+..+++++.+-..++...-...+++
T Consensus 62 ~~t~ae~~~p~gewK--~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 62 KESFAEMNRSTNEWK--TVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp SSCHHHHTCCCSHHH--HHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccccccccCCCCchh--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456788988875544 255555554444444455455555554
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.41 E-value=3.4e+02 Score=13.50 Aligned_cols=16 Identities=19% Similarity=0.438 Sum_probs=10.0
Q ss_pred hHHHHHHhHHHHHHHh
Q psy16729 148 SLLGLIFPVLIEFVTY 163 (238)
Q Consensus 148 ~~l~fi~P~l~yl~~~ 163 (238)
+.+..+.|..|-+.++
T Consensus 11 t~LFilvPt~FLliLy 26 (36)
T d2axtm1 11 TALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4556677887765553
No 7
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.38 E-value=3.2e+02 Score=19.50 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=20.5
Q ss_pred hhhcCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Q psy16729 15 ENNMQTPNHFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGE 55 (238)
Q Consensus 15 ~~~mk~p~~~~~~~~v~~~a~~~~~~~Y~~~g~~gY~~fG~ 55 (238)
+.+-|+|+.... ..-.+...+-+..|+.||.-=.|
T Consensus 104 ~gsyk~pre~~W------~~Gv~l~~l~m~~aftGY~Lpw~ 138 (212)
T d1q90b_ 104 TGGFKRPRELTW------VTGVIMAVCTVSFGVTGYSLPWD 138 (212)
T ss_dssp TTTTSSSCHHHH------HHHHHHHHHHHHHHHHHHHTTCB
T ss_pred cCcccCccccee------hHhHHHHHHHHHHHHhhhhcchh
Confidence 345566665544 23334456667788889965444
No 8
>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.16 E-value=2.5e+02 Score=17.45 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCCCCCCeeEEe
Q psy16729 195 TSIGDIMRAYMPPDSDLPVAIIN 217 (238)
Q Consensus 195 ~si~~ii~~~~~~~~~~~~~~~~ 217 (238)
.++.++++-|+...+..||....
T Consensus 84 ~sl~~LI~~y~~~~~~L~~~L~~ 106 (113)
T d2qmsa1 84 TDLLQLVEFHQLNRGILPCLLRH 106 (113)
T ss_dssp SSHHHHHHHHTTCCTTSSSCCCE
T ss_pred CCHHHHHHHhccCCCCCccccCC
Confidence 57888999888887777765433
No 9
>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.05 E-value=2.4e+02 Score=16.97 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCCCCCCee
Q psy16729 194 QTSIGDIMRAYMPPDSDLPVA 214 (238)
Q Consensus 194 ~~si~~ii~~~~~~~~~~~~~ 214 (238)
..++.++++-|++..+..||-
T Consensus 75 F~sl~~LV~~y~~~~~gL~~~ 95 (103)
T d1qcfa2 75 FSTLQELVDHYKKGNDGLCQK 95 (103)
T ss_dssp BSSHHHHHHHHTSSCTTSSSC
T ss_pred cCCHHHHHHHHhhCCCCCCcc
Confidence 368889999888777666653
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.03 E-value=4.1e+02 Score=13.82 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=8.4
Q ss_pred hHHHHhHHHHHHHHHHHH
Q psy16729 173 WRVWKNILVLIFGVLALV 190 (238)
Q Consensus 173 ~~~~~~~~ii~~Gi~~~v 190 (238)
|.....++++++-+++.+
T Consensus 23 ~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 23 GATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555444443
Done!