RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16729
(238 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 37/289 (12%), Positives = 65/289 (22%), Gaps = 114/289 (39%)
Query: 10 QVMPLENNMQ--TPNHFVGLCGVLNQGMGG------VTMIY----ILLGFLG---YLKYG 54
+ L + P V + G+ G + + +L
Sbjct: 136 PYLKLRQALLELRPAKNVLI-----DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 55 ELTEDNITYNLPQ---HEIAP-------QIANIAIGIAVFCTFGLQFFV------CLEI- 97
+ Q ++I P +NI + I + CL +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 98 --VWN--------------------GVKDNFVKKPKFYEY----------------IVRT 119
V N V D F+ ++
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 120 VIVTAAVGLAVAVPTIGPF-LGLIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWR---V 175
+ L V T P L +I + + + WD NW+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAES-----------IRDGLATWD------NWKHVNC 352
Query: 176 WK--NILVLIFGVLALVFGTQTSIGDIMRAY------MPPDSDLPVAII 216
K I+ VL R PP + +P ++
Sbjct: 353 DKLTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSAHIPTILL 392
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.014
Identities = 38/214 (17%), Positives = 56/214 (26%), Gaps = 106/214 (49%)
Query: 2 ANGHLP-DSQV-MPLENNMQTPNHFV--G----LCGV------------LNQGMGGVTM- 40
N HLP QV + L N + V G L G+ L+Q +
Sbjct: 356 TNSHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFS 410
Query: 41 ---IYILLGFL--------GYLKYGELTEDNITYNLPQHEIAPQIANIAIGIAVFCTFGL 89
+ FL L D I +L ++ ++ I I V+ TF
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLL---VPASDLINKDLVKNNVS--FNAKDIQIPVYDTF-- 463
Query: 90 QFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSL 149
+G D L V +I +
Sbjct: 464 ----------DG-SD-----------------------LRVLSGSISE----------RI 479
Query: 150 LGLIF--PVLIEFVTYWD----------VGFGPG 171
+ I PV W+ + FGPG
Sbjct: 480 VDCIIRLPV------KWETTTQFKATHILDFGPG 507
Score = 34.6 bits (79), Expect = 0.030
Identities = 38/276 (13%), Positives = 75/276 (27%), Gaps = 125/276 (45%)
Query: 37 GVTMIYILLGFLG------YLKYGELTEDNITYNLPQHEIAPQIANIA----------IG 80
G + + G G Y + EL + Y + I A +
Sbjct: 152 GNAQLVAIFG--GQGNTDDYFE--ELRD---LYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 81 IAVFCTFGLQFFVCLEIVWNGVKDNFVKKPKFYEYIVRTVIVTAAVGLAVAVPTIGPFLG 140
T GL + W +N P +Y++ + + P +G
Sbjct: 205 AEKVFTQGLNI-----LEW---LENPSNTPDK-DYLL-----SIPISC--------PLIG 242
Query: 141 LIGAFCFSLLGLIFPVLIEFVTYWDVGFGPGNWRV-----------------------WK 177
+I + VT +GF PG R W+
Sbjct: 243 VIQLAHY------------VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 178 NILVLIFGVLALVF-----GTQT--------------------------SIGDIMR---- 202
+ V + + ++F + SI ++ +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 203 -------AYMPPDSDLPVAIING--TLGLAGNA-SL 228
+++P + ++++NG L ++G SL
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Score = 30.4 bits (68), Expect = 0.66
Identities = 33/202 (16%), Positives = 55/202 (27%), Gaps = 89/202 (44%)
Query: 113 YEYIVRTVIVTAA---VGLAVAVPTIGPFLG--------------------LIGAFCFSL 149
Y +V +I +A L L+ S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-IS- 237
Query: 150 LGLIFPVLIEFVTYWDV----GFGPGNWRV-----------------------WKNILVL 182
LI +I+ Y GF PG R W++ V
Sbjct: 238 CPLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 183 IFGVLALVFGTQTSIGDIMR---AYMPPDSDLPVAII-------NGT----LGLAG---- 224
+ + ++F IG +R AY P++ LP +I+ G L ++
Sbjct: 296 VRKAITVLF----FIG--VRCYEAY--PNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 225 ---------NASLPSNGTAFTA 237
N+ LP+ +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEIS 369
Score = 29.2 bits (65), Expect = 1.4
Identities = 27/174 (15%), Positives = 48/174 (27%), Gaps = 56/174 (32%)
Query: 2 ANGHLPDS-----QVMPLENNMQTPNHFVGLCG-VLNQGMGGVTMIYILLGFLGYLK-YG 54
A+ H D+ + + N + HF G G + + + I+ G L K +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 55 ELTED--NITYNLPQHEIAP----QIANIAIGIAVFCTFGLQFFVCLEIVWNGVKDNFVK 108
E+ E + T+ + ++ Q A + A F K +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE------------DL---KSKGLI 1753
Query: 109 KPKFY-------EYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFS-LLGLIF 154
EY A LA L+ ++F
Sbjct: 1754 PADATFAGHSLGEY-------AALASLA-------------DVMSIESLVEVVF 1787
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.46
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 194 QTSIGDIMRAYMPPDSDLPVAIINGTL 220
Q S ++ Y DS +A I T+
Sbjct: 26 QAS----LKLY-ADDSAPALA-IKATM 46
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding,
nucleotide-binding, structural genomics, joint for
structural genomics, JCSG; HET: MSE; 1.65A
{Psychrobacter arcticus 273-4}
Length = 524
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 23 HFVGLCGVLNQGMGGVTMIYILLGF 47
H +G+CG MG + ++ LG
Sbjct: 23 HILGICGT---FMGSLALLARALGH 44
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate
ligase; UDP-N-acetylmuramate:L-alanyl-G
glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria
meningitidis MC58}
Length = 326
Score = 27.2 bits (61), Expect = 4.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 23 HFVGLCGVLNQGMGGVTMIYILLGF 47
H +G+ G MGG+ I GF
Sbjct: 8 HIIGIGGT---FMGGLAAIAKEAGF 29
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 26.6 bits (59), Expect = 9.3
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 45 LGFLGYL---KYGELTEDNITYNLPQHEIAPQIANIAIGIAV---FCTFGLQFF 92
LG G + G + N Y + + I + G+ F
Sbjct: 91 LGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.146 0.460
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,817,066
Number of extensions: 231612
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 34
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)