RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16729
         (238 letters)



>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 92

 Score = 25.9 bits (57), Expect = 1.6
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 11/60 (18%)

Query: 110 PKFYEYIVRTVIVTAAVGLAVAVPTIGPFLGL----IGAFC-------FSLLGLIFPVLI 158
           PKF    V+ V +    G   A   + P +G                     GL   V +
Sbjct: 9   PKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKL 68


>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase
          MurC {Haemophilus influenzae [TaxId: 727]}
          Length = 96

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 23 HFVGLCGVLNQGMGGVTMIYILLGFLGYLKYGELTEDNITYNLPQHEIAPQIANIAIGIA 82
          HF+G+ G    GM G+  I +  G+       +++  +I   +    +A   A I IG A
Sbjct: 12 HFIGIGGA---GMSGIAEILLNEGY-------QISGSDIADGVVTQRLAQAGAKIYIGHA 61

Query: 83 VFCTFGLQFFV 93
               G    V
Sbjct: 62 EEHIEGASVVV 72


>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC
          {Thermotoga maritima [TaxId: 2336]}
          Length = 89

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)

Query: 23 HFVGLCGVLNQGMGGVTMIYILLGF 47
          HFVG+ G+   GM  V +     G 
Sbjct: 5  HFVGIGGI---GMSAVALHEFSNGN 26


>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide),
           N-terminal domain {Bacillus thuringiensis tenebrionis,
           CRYIIIA (BT13) [TaxId: 1444]}
          Length = 229

 Score = 24.8 bits (54), Expect = 8.7
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 4/42 (9%)

Query: 114 EYIVRTVIVTAAVGLAVAVPTIGPFLGLIGAFCFSLLGLIFP 155
           + I + + V   +   V  P  G  +        + L  I+P
Sbjct: 4   DVIQKGISVVGDLLGVVGFPFGGALVSFYT----NFLNTIWP 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.146    0.460 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 924,683
Number of extensions: 42989
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 11
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)