Query psy1673
Match_columns 161
No_of_seqs 183 out of 463
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:32:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g5o_E G-protein-signaling mod 9.3 74 0.0025 16.3 0.2 10 135-144 14-23 (26)
2 2dw3_A Intrinsic membrane prot 8.1 4.5E+02 0.016 17.1 3.7 33 109-141 28-60 (77)
3 4f88_1 Plyca; lysin, bacteriop 6.1 1.3E+02 0.0045 25.7 0.3 29 126-155 49-77 (465)
4 2rod_B NOXA, noxaa; MCL-1, apo 5.4 2.2E+02 0.0074 14.6 0.8 7 121-127 18-24 (27)
5 2nrg_A Intrinsic membrane prot 5.0 7E+02 0.024 16.4 3.3 34 108-141 28-61 (82)
6 3hr4_A Nitric oxide synthase, 3.8 4.8E+02 0.016 19.9 2.1 21 126-147 28-48 (219)
7 2f8e_A VPG protein; RNA-depend 3.4 2.6E+02 0.009 14.3 0.2 8 136-143 6-13 (26)
8 2p1l_B Beclin 1; apoptosis, au 3.2 3.1E+02 0.011 14.7 0.3 12 4-15 18-29 (31)
9 2zvv_Y Cyclin-dependent kinase 2.8 4.3E+02 0.015 13.5 0.6 10 138-147 14-23 (26)
10 3qb2_A Immunity factor for SPN 2.8 4E+02 0.014 20.1 0.7 12 22-33 53-64 (187)
No 1
>4g5o_E G-protein-signaling modulator 2; galphai, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 2.90A {Mus musculus} PDB: 4g5q_E* 4g5r_E*
Probab=9.34 E-value=74 Score=16.27 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=7.3
Q ss_pred hccCCcccee
Q psy1673 135 FAMSHQQPLV 144 (161)
Q Consensus 135 ~~~~~~r~Lv 144 (161)
-+|++||.|.
T Consensus 14 krmdeqrvll 23 (26)
T 4g5o_E 14 KRMDEQRVLL 23 (26)
T ss_dssp CSCGGGCBCC
T ss_pred HhhhHHHhhh
Confidence 3788888763
No 2
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=8.08 E-value=4.5e+02 Score=17.13 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHHHhhhHHHHHHhhccCCcc
Q psy1673 109 GAVGLSLTILTVLWCAMSASKLLVTCFAMSHQQ 141 (161)
Q Consensus 109 ~~~~~~l~~~~v~Wst~sas~~f~~~~~~~~~r 141 (161)
+-.|+.-..+...|....+.+..-+.++.|+|+
T Consensus 28 kGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 28 KGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 445677778888999999999999988655554
No 3
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein; 3.30A {Streptococcus phage C1}
Probab=6.09 E-value=1.3e+02 Score=25.69 Aligned_cols=29 Identities=34% Similarity=0.506 Sum_probs=22.7
Q ss_pred hhHHHHHHhhccCCccceeeechHHHHHHH
Q psy1673 126 SASKLLVTCFAMSHQQPLVAYPCAILYSVF 155 (161)
Q Consensus 126 sas~~f~~~~~~~~~r~LvaYP~~L~Y~~f 155 (161)
-||++..+..+ +-|++=|.|..+|.|++|
T Consensus 49 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (465)
T 4f88_1 49 NASNLVSTYIP-KMQEYGVSYTLFLMYTVF 77 (465)
T ss_dssp CHHHHHHHHHH-HHHHTTCCHHHHHHHHHH
T ss_pred chhhhhhhhcc-hHHhhCceeeEEEEEEEe
Confidence 36777777775 556677899999999988
No 4
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=5.39 E-value=2.2e+02 Score=14.62 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=4.0
Q ss_pred HHHHhhh
Q psy1673 121 LWCAMSA 127 (161)
Q Consensus 121 ~Wst~sa 127 (161)
..|||||
T Consensus 18 vyctwsa 24 (27)
T 2rod_B 18 VYCTWSA 24 (27)
T ss_dssp HHHHHHS
T ss_pred eEEeecC
Confidence 4566665
No 5
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=4.97 E-value=7e+02 Score=16.39 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHHHHhhhHHHHHHhhccCCcc
Q psy1673 108 RGAVGLSLTILTVLWCAMSASKLLVTCFAMSHQQ 141 (161)
Q Consensus 108 ~~~~~~~l~~~~v~Wst~sas~~f~~~~~~~~~r 141 (161)
-.-.|+.-..+...|....+.+..-+.++.|+|+
T Consensus 28 lKGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~ 61 (82)
T 2nrg_A 28 MKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 61 (82)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTC
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 3445677778888999999999999988655554
No 6
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=3.78 E-value=4.8e+02 Score=19.85 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.0
Q ss_pred hhHHHHHHhhccCCccceeeec
Q psy1673 126 SASKLLVTCFAMSHQQPLVAYP 147 (161)
Q Consensus 126 sas~~f~~~~~~~~~r~LvaYP 147 (161)
-+++++.+..+ ++++.+|.|-
T Consensus 28 ~~~~l~~~~~~-~~~kv~IlYg 48 (219)
T 3hr4_A 28 FACMLMRKTMA-SRVRVTILFA 48 (219)
T ss_dssp HHHHHHHHHHH-TSCEEEEEEE
T ss_pred HHHHHHHHHHh-cCCcEEEEEE
Confidence 35668888777 8888999883
No 7
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=3.43 E-value=2.6e+02 Score=14.35 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=5.7
Q ss_pred ccCCccce
Q psy1673 136 AMSHQQPL 143 (161)
Q Consensus 136 ~~~~~r~L 143 (161)
.||.||+|
T Consensus 6 plerq~pl 13 (26)
T 2f8e_A 6 PLERQRPL 13 (26)
T ss_pred chhhcCcc
Confidence 56777776
No 8
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=3.16 E-value=3.1e+02 Score=14.66 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=4.9
Q ss_pred hhhcccCCCcee
Q psy1673 4 LLYLMATSPNVT 15 (161)
Q Consensus 4 l~nl~~~~~~i~ 15 (161)
|++.|+++.+|+
T Consensus 18 lFdILS~~sdID 29 (31)
T 2p1l_B 18 LFDIMSGQTDVD 29 (31)
T ss_dssp HHHHTTC-----
T ss_pred HHHHHhCCCcCC
Confidence 567777766665
No 9
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=2.80 E-value=4.3e+02 Score=13.50 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=6.0
Q ss_pred CCccceeeec
Q psy1673 138 SHQQPLVAYP 147 (161)
Q Consensus 138 ~~~r~LvaYP 147 (161)
+.||-||.||
T Consensus 14 hsKRRlvf~~ 23 (26)
T 2zvv_Y 14 HSKRRLIFSX 23 (26)
T ss_pred hhhceEEEEe
Confidence 3466666665
No 10
>3qb2_A Immunity factor for SPN; glycohydrolase inhibitor, streptococcus pyogenes glycohydrol toxin, hydrolase inhibitor; 2.50A {Streptococcus pyogenes} PDB: 3pnt_B
Probab=2.80 E-value=4e+02 Score=20.12 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=9.6
Q ss_pred echhchHHHHHH
Q psy1673 22 VLGYCLLPMVVL 33 (161)
Q Consensus 22 vlGYcllPlvi~ 33 (161)
++-||+.|+-+-
T Consensus 53 LlEYcLYPLYve 64 (187)
T 3qb2_A 53 ILEYGVYPAFIK 64 (187)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHhhhhhhcc
Confidence 577999998764
Done!