Query psy1673
Match_columns 161
No_of_seqs 183 out of 463
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 20:32:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 16.9 23 0.0017 17.2 0.9 14 147-160 6-19 (26)
2 d3c96a2 d.16.1.2 (A:183-293) M 13.9 29 0.0021 22.1 1.1 13 136-148 27-39 (111)
3 d1p9ga_ g.3.1.1 (A:) Antifunga 5.0 85 0.0062 16.3 0.3 9 18-26 15-23 (41)
4 d2voua2 d.16.1.2 (A:164-291) D 3.7 1.2E+02 0.0085 19.3 0.3 12 137-148 34-45 (128)
5 d2fi9a1 c.103.1.1 (A:11-128) H 2.9 3.7E+02 0.027 16.4 2.4 21 122-143 91-111 (118)
6 d1wdda2 d.58.9.1 (A:11-150) Ri 2.9 1.9E+02 0.014 19.3 0.8 14 138-151 83-98 (140)
7 d2axtf1 f.23.38.1 (F:11-45) Cy 2.5 1.3E+02 0.0093 15.3 -0.4 6 144-149 1-6 (35)
8 d2d69a2 d.58.9.1 (A:8-133) Rib 2.4 1.9E+02 0.014 19.0 0.1 11 141-151 76-86 (126)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 2.2 4.3E+02 0.032 13.4 1.5 7 135-141 24-30 (37)
10 d1mixa2 b.55.1.5 (A:309-400) T 2.1 3.4E+02 0.025 15.8 1.2 13 136-148 33-45 (92)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.91 E-value=23 Score=17.18 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=10.2
Q ss_pred chHHHHHHHHhhhc
Q psy1673 147 PCAILYSVFALITV 160 (161)
Q Consensus 147 P~~L~Y~~f~ll~i 160 (161)
.+.+++++|++++.
T Consensus 6 aiw~fw~ffalli~ 19 (26)
T d1rzhh2 6 AIYSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35678888888763
No 2
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.92 E-value=29 Score=22.11 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=9.8
Q ss_pred ccCCccceeeech
Q psy1673 136 AMSHQQPLVAYPC 148 (161)
Q Consensus 136 ~~~~~r~LvaYP~ 148 (161)
...+.|.+|+||+
T Consensus 27 ~~g~~~~~V~YPi 39 (111)
T d3c96a2 27 NDEHWSRLVAYPI 39 (111)
T ss_dssp ECTTCCEEEEEEC
T ss_pred ecCCCceEEEEec
Confidence 3346778999998
No 3
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]}
Probab=5.01 E-value=85 Score=16.30 Aligned_cols=9 Identities=44% Similarity=1.088 Sum_probs=6.4
Q ss_pred eeeeechhc
Q psy1673 18 TVTSVLGYC 26 (161)
Q Consensus 18 ~~~~vlGYc 26 (161)
-++|+-|||
T Consensus 15 lccsiygyc 23 (41)
T d1p9ga_ 15 LCCSIYGYC 23 (41)
T ss_dssp CEEETTSCE
T ss_pred eeEEEeeee
Confidence 367778887
No 4
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Probab=3.68 E-value=1.2e+02 Score=19.27 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.4
Q ss_pred cCCccceeeech
Q psy1673 137 MSHQQPLVAYPC 148 (161)
Q Consensus 137 ~~~~r~LvaYP~ 148 (161)
+.+++.+|+||+
T Consensus 34 ~g~~~h~v~YpI 45 (128)
T d2voua2 34 LLDDGHLIAYPI 45 (128)
T ss_dssp EETTEEEEEEEE
T ss_pred EcCCceEEEEEe
Confidence 456777999997
No 5
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}
Probab=2.93 E-value=3.7e+02 Score=16.43 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=15.3
Q ss_pred HHHhhhHHHHHHhhccCCccce
Q psy1673 122 WCAMSASKLLVTCFAMSHQQPL 143 (161)
Q Consensus 122 Wst~sas~~f~~~~~~~~~r~L 143 (161)
-.|.+|-|.|....+ |+||..
T Consensus 91 M~T~aAcrTfNvL~s-EgR~Va 111 (118)
T d2fi9a1 91 MSTGAAVRTFNVLLA-EDRAVA 111 (118)
T ss_dssp ECHHHHHHHHHHHHH-TTCCEE
T ss_pred eCcHHHHHHHHHHHh-cCccEE
Confidence 357888888888666 677643
No 6
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=2.91 E-value=1.9e+02 Score=19.33 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=9.3
Q ss_pred CCccce--eeechHHH
Q psy1673 138 SHQQPL--VAYPCAIL 151 (161)
Q Consensus 138 ~~~r~L--vaYP~~L~ 151 (161)
++++.. ||||+=||
T Consensus 83 ~~~~~~a~iAYp~dLF 98 (140)
T d1wdda2 83 EDNQYIAYVAYPLDLF 98 (140)
T ss_dssp CSSCEEEEEEECGGGS
T ss_pred CCceeEEEEecchhhc
Confidence 444555 89998654
No 7
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.54 E-value=1.3e+02 Score=15.34 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=3.5
Q ss_pred eeechH
Q psy1673 144 VAYPCA 149 (161)
Q Consensus 144 vaYP~~ 149 (161)
|.||++
T Consensus 1 v~yPif 6 (35)
T d2axtf1 1 VSYPIF 6 (35)
T ss_dssp CCCCSS
T ss_pred CCcceE
Confidence 457764
No 8
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.37 E-value=1.9e+02 Score=18.97 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.1
Q ss_pred cceeeechHHH
Q psy1673 141 QPLVAYPCAIL 151 (161)
Q Consensus 141 r~LvaYP~~L~ 151 (161)
..=||||+-||
T Consensus 76 ~a~IAYP~dLF 86 (126)
T d2d69a2 76 IAKIAYPLTLF 86 (126)
T ss_dssp EEEEEECGGGS
T ss_pred EEEEEccHHhc
Confidence 35689998775
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.23 E-value=4.3e+02 Score=13.39 Aligned_cols=7 Identities=0% Similarity=0.159 Sum_probs=3.4
Q ss_pred hccCCcc
Q psy1673 135 FAMSHQQ 141 (161)
Q Consensus 135 ~~~~~~r 141 (161)
++.||||
T Consensus 24 L~rE~~R 30 (37)
T d1eysh2 24 LRREDKR 30 (37)
T ss_dssp HHHHTTS
T ss_pred HHhcccc
Confidence 4445555
No 10
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.11 E-value=3.4e+02 Score=15.85 Aligned_cols=13 Identities=0% Similarity=0.084 Sum_probs=9.9
Q ss_pred ccCCccceeeech
Q psy1673 136 AMSHQQPLVAYPC 148 (161)
Q Consensus 136 ~~~~~r~LvaYP~ 148 (161)
+-++|+.|+.||.
T Consensus 33 d~~t~~~l~~~py 45 (92)
T d1mixa2 33 DEKTKEVIQEWSL 45 (92)
T ss_dssp ETTTCCEEEEEEG
T ss_pred cCCCCceEEEcch
Confidence 4577888888885
Done!