RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1673
         (161 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.014
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 29/100 (29%)

Query: 6   YLMATSPNVTIS----TVTSVLGYCLLPMVVLAGVN---VILSLQGAVGLSLTILTVLWC 58
           YL  + P   IS     V  +  Y +     L G     +   L+GA G S  ++T +  
Sbjct: 230 YL-LSIP---ISCPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283

Query: 59  AMS---------ASKLLVTCFAM---SHQQPLVAYPCAIL 86
           A +           K +   F +    ++    AYP   L
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSL 319



 Score = 33.5 bits (76), Expect = 0.024
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 27/100 (27%)

Query: 75  QQPLVAYPCAILYS-----VFALITFVTMSTVL--TPF----VSRGAVGLSLTILTVLWC 123
             P   Y  +I  S     V  L  +V  + +L  TP       +GA G S  ++T +  
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283

Query: 124 AMS---------ASKLLVTCFAM---SHQQPLVAYPCAIL 151
           A +           K +   F +    ++    AYP   L
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSL 319


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.12
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 41/178 (23%)

Query: 7   LMATSPNVTISTVTSVLGYCLLPMVVLAGVNVILSLQGAVGLSLTILTVLWC-------- 58
           ++ T+    ++   S      + +      +  ++L      SL +L  L C        
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLD-----HHSMTLTPDEVKSL-LLKYLDCRPQDLPRE 321

Query: 59  AMSASKLLVTCFAMSHQQPLVAYPCAI----LYSVFALITFVTMS-TVLTPFVSRGA--- 110
            ++ +   ++  A S +                +   L T +  S  VL P   R     
Sbjct: 322 VLTTNPRRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 111 -------VGLSLTILTVLWCAMSAS---KLLVTCFAMSHQQPLVA-YPCAILYSVFAL 157
                    +   +L+++W  +  S    ++       H+  LV   P     S+ ++
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL----HKYSLVEKQPKESTISIPSI 431


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,131,295
Number of extensions: 107276
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 7
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.1 bits)