RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1673
         (161 letters)



>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 233

 Score = 25.2 bits (55), Expect = 4.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 14 VTISTVTSVLGYCLLPMVVLAGV---NVILSLQGAV-GLSLT 51
            IST+   +GY LLP+  + G+      +   G   G S+T
Sbjct: 43 TAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSIT 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,981
Number of extensions: 17402
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 5
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 49 (23.6 bits)