Query psy16731
Match_columns 282
No_of_seqs 130 out of 1206
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:34:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 1.7E-60 3.6E-65 446.5 18.2 225 1-282 30-254 (321)
2 KOG0819|consensus 100.0 1.2E-40 2.6E-45 312.6 18.3 206 2-273 103-320 (321)
3 PF00191 Annexin: Annexin; In 99.6 4.8E-16 1E-20 114.0 7.6 66 203-269 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.5 2.1E-13 4.5E-18 100.0 7.4 66 68-185 1-66 (66)
5 smart00335 ANX Annexin repeats 99.3 2.3E-12 5E-17 90.9 5.9 53 4-61 1-53 (53)
6 smart00335 ANX Annexin repeats 99.3 6E-12 1.3E-16 88.8 5.2 53 217-269 1-53 (53)
7 PF13766 ECH_C: 2-enoyl-CoA Hy 30.4 56 0.0012 26.8 3.1 49 223-271 36-92 (118)
8 PF14003 YlbE: YlbE-like prote 28.7 73 0.0016 24.2 3.2 35 222-257 13-47 (65)
9 COG5126 FRQ1 Ca2+-binding prot 24.9 4.8E+02 0.01 22.9 8.2 87 13-109 10-102 (160)
10 PF13720 Acetyltransf_11: Udp 23.3 1.3E+02 0.0027 23.3 3.8 27 230-256 28-56 (83)
11 PF13720 Acetyltransf_11: Udp 23.0 1.2E+02 0.0025 23.5 3.5 21 16-36 27-47 (83)
12 KOG3426|consensus 21.1 3.9E+02 0.0085 22.6 6.4 86 9-111 10-95 (124)
13 PF13062 DUF3924: Protein of u 20.5 78 0.0017 23.3 1.9 24 230-253 11-34 (62)
14 PF11740 KfrA_N: Plasmid repli 20.1 4.4E+02 0.0096 20.8 6.5 50 198-250 3-52 (120)
No 1
>KOG0819|consensus
Probab=100.00 E-value=1.7e-60 Score=446.47 Aligned_cols=225 Identities=32% Similarity=0.512 Sum_probs=222.8
Q ss_pred CCCCCChhhHHHHhcCCCcHHHHHHHHHhHHhhCCCCCcccHHHHHHhhhchhHHHHHHHhcCCcHHHHHHHHHHhhccC
Q psy16731 1 MGSQKDVVQSFPIIKERDSAPPCQQVQHSAVCFGADLLPVDLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTL 80 (282)
Q Consensus 1 ~G~gtDe~~l~~IL~~rs~~q~~~i~~~Y~~~ygk~~~~~~L~~~l~se~sG~~~~ll~~l~~~p~~~da~~L~~Al~~~ 80 (282)
.|||||+.+||+||++|+|+||++|+++|+..||+| |+++|++|+||+|++++++||.+|+++||.+|++||+|.
T Consensus 30 kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkD-----Li~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~amkg~ 104 (321)
T KOG0819|consen 30 KGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKD-----LIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAMKGL 104 (321)
T ss_pred hcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHH-----HHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHHhcc
Confidence 499999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhhcCCHHHHHHHHHHHHhhcccccchhhccCCCCCCCCcccchhhhHHHHHHHHhhhcccchhhhhcc
Q psy16731 81 PLIKDTNTITEIVITKNSTELIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160 (282)
Q Consensus 81 g~~td~~~lieIl~~rs~~el~~i~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 160 (282)
| ||++++|||+||||+.||.+++++|+.. |
T Consensus 105 g--tde~vlIEIlcTRT~~el~~i~~aY~~~------------------------------------------------y 134 (321)
T KOG0819|consen 105 G--TDEKVLIEILCTRTNEELRAIRQAYQEL------------------------------------------------Y 134 (321)
T ss_pred C--cchhhheeeeccCCHHHHHHHHHHHHHH------------------------------------------------H
Confidence 9 9999999999999999999999999999 9
Q ss_pred CCcHHHHhhcccCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHhccCCCCCccchhhhhcccCCHHHHHHHHH
Q psy16731 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFR 240 (282)
Q Consensus 161 ~~~L~~~i~~~~~~sg~~~~~l~~il~~~r~~~~~vd~~~a~~dA~~L~~A~~g~~gtde~~l~~Il~~rs~~~L~~I~~ 240 (282)
+++|++||. ++|||+|+++|+++++|.|++.+.||.++|++||+.||+|+++++|||+..|+.||++||..||++||.
T Consensus 135 ~~sLEeDI~--s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~ 212 (321)
T KOG0819|consen 135 KKSLEEDIA--SDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFE 212 (321)
T ss_pred cccHHHHhh--hccCchHHHHHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHhhccHHHHHHHHHHHhccCCCCCCCCC
Q psy16731 241 EYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYLTK 282 (282)
Q Consensus 241 ~Yk~~~g~sL~~~I~~e~sGd~~~~Llaiv~~~~~~~~yfA~ 282 (282)
+|++.+|++++++|+++++|+++.+|+++|.|++|||.|||+
T Consensus 213 ~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~~yFA~ 254 (321)
T KOG0819|consen 213 EYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYFAE 254 (321)
T ss_pred HHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999999999999999985
No 2
>KOG0819|consensus
Probab=100.00 E-value=1.2e-40 Score=312.63 Aligned_cols=206 Identities=19% Similarity=0.255 Sum_probs=197.8
Q ss_pred CCCCChhhHHHHhcCCCcHHHHHHHHHhHHhhCCCCCcccHHHHHHhhhchhHHHHHHHhcCC-----------cHHHHH
Q psy16731 2 GSQKDVVQSFPIIKERDSAPPCQQVQHSAVCFGADLLPVDLILDLKSELSSELKSIIVNLMYP-----------PLGFLC 70 (282)
Q Consensus 2 G~gtDe~~l~~IL~~rs~~q~~~i~~~Y~~~ygk~~~~~~L~~~l~se~sG~~~~ll~~l~~~-----------p~~~da 70 (282)
|+|||+..++||||+|||.|+.+|+++|+..||++ |++||.+++||+|+++|+.|+.+ .++.||
T Consensus 103 g~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~s-----LEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA 177 (321)
T KOG0819|consen 103 GLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKS-----LEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDA 177 (321)
T ss_pred ccCcchhhheeeeccCCHHHHHHHHHHHHHHHccc-----HHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHHHHH
Confidence 89999999999999999999999999999999999 99999999999999999999865 367999
Q ss_pred HHHHHhhc-cCCCCCChHHHHHHhhcCCHHHHHHHHHHHHhhcccccchhhccCCCCCCCCcccchhhhHHHHHHHHhhh
Q psy16731 71 LELNRALN-TLPLIKDTNTITEIVITKNSTELIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINN 149 (282)
Q Consensus 71 ~~L~~Al~-~~g~~td~~~lieIl~~rs~~el~~i~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (282)
..||+|.. ++| ||+..++.||++||..||..+.+.|++.
T Consensus 178 ~~L~~Age~k~g--tde~~~~~Il~tRs~~qL~~vf~~y~~~-------------------------------------- 217 (321)
T KOG0819|consen 178 QDLYEAGEKKWG--TDEDKFIRILTTRSKAQLRLVFEEYQRI-------------------------------------- 217 (321)
T ss_pred HHHHHHhhhhcc--CcHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------------------
Confidence 99999998 688 9999999999999999999999999999
Q ss_pred cccchhhhhccCCcHHHHhhcccCCChHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHhccCCCCCccchhhhhccc
Q psy16731 150 LTLSSLVISVFNRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEESLINKVMGH 229 (282)
Q Consensus 150 ~~~~~~~~~~y~~~L~~~i~~~~~~sg~~~~~l~~il~~~r~~~~~vd~~~a~~dA~~L~~A~~g~~gtde~~l~~Il~~ 229 (282)
+++++++.|. .+++|+|++++++++.+.|++ ...+|+.||.||.| .|||+.+++||+++
T Consensus 218 ----------~g~diek~I~--~e~~gd~~~~llaiv~c~~n~--------~~yFA~~L~~amkg-~GTdd~~LiRI~Vs 276 (321)
T KOG0819|consen 218 ----------SGKDIEKSIK--EEFSGDFEKLLLAIVKCIRNP--------PAYFAERLRKAMKG-LGTDDKTLIRIVVS 276 (321)
T ss_pred ----------cchhHHHHHh--hccCchHHHHHHHHHHHHcCH--------HHHHHHHHHHHHhc-cCCCccceeeeeee
Confidence 9999999999 999999999999999999876 45699999999999 89999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHhhccHHHHHHHHHHHhcc
Q psy16731 230 ESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGD 273 (282)
Q Consensus 230 rs~~~L~~I~~~Yk~~~g~sL~~~I~~e~sGd~~~~Llaiv~~~ 273 (282)
||+.+|..|+.+|+++||++|+++|+..+||||+++|++++.+.
T Consensus 277 RsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~ 320 (321)
T KOG0819|consen 277 RSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGD 320 (321)
T ss_pred HHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999864
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.64 E-value=4.8e-16 Score=114.00 Aligned_cols=66 Identities=33% Similarity=0.573 Sum_probs=62.7
Q ss_pred HHHHHHHHhccCCCCCccchhhhhcccCCHHHHHHHHHHHHHHhCCcHHHHHHhhccHHHHHHHHHH
Q psy16731 203 QQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAI 269 (282)
Q Consensus 203 ~dA~~L~~A~~g~~gtde~~l~~Il~~rs~~~L~~I~~~Yk~~~g~sL~~~I~~e~sGd~~~~Llai 269 (282)
+||+.|++|++| +|+|+..+++|+++||+.|+++|+.+|++.||++|+++|++++||+++++|+++
T Consensus 1 ~DA~~l~~a~~~-~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKG-WGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSS-SSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccC-CCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999988 899999999999999999999999999999999999999999999999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.46 E-value=2.1e-13 Score=99.96 Aligned_cols=66 Identities=18% Similarity=0.406 Sum_probs=62.7
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHhhcCCHHHHHHHHHHHHhhcccccchhhccCCCCCCCCcccchhhhHHHHHHHHh
Q psy16731 68 FLCLELNRALNTLPLIKDTNTITEIVITKNSTELIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFI 147 (282)
Q Consensus 68 ~da~~L~~Al~~~g~~td~~~lieIl~~rs~~el~~i~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (282)
+||+.|+.|++++| +|+.++++|+++||+.|+.+|+++|+..
T Consensus 1 ~DA~~l~~a~~~~g--~de~~li~Il~~rs~~ql~~i~~~Y~~~------------------------------------ 42 (66)
T PF00191_consen 1 YDAELLHAALKGWG--TDEDVLIEILCTRSPAQLRAIKQAYKKK------------------------------------ 42 (66)
T ss_dssp HHHHHHHHHHSSSS--STHHHHHHHHHHSTHHHHHHHHHHHHHH------------------------------------
T ss_pred CHHHHHHHHccCCC--CChhHhhhHHhhhcccccceeehhhhhh------------------------------------
Confidence 58999999999999 9999999999999999999999999999
Q ss_pred hhcccchhhhhccCCcHHHHhhcccCCChHHHHHHHHH
Q psy16731 148 NNLTLSSLVISVFNRVLVNEVGSLRSSSSHYKNFVTSI 185 (282)
Q Consensus 148 ~~~~~~~~~~~~y~~~L~~~i~~~~~~sg~~~~~l~~i 185 (282)
|+++|+++|. ++++|+|++++++|
T Consensus 43 ------------~g~~L~~~i~--~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 43 ------------YGKDLEEDIK--KETSGDFEKLLLAL 66 (66)
T ss_dssp ------------HSS-HHHHHH--HHSTHHHHHHHHHH
T ss_pred ------------hHHHHHHHHH--HhCCHHHHHHHHhC
Confidence 9999999999 99999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.33 E-value=2.3e-12 Score=90.94 Aligned_cols=53 Identities=26% Similarity=0.309 Sum_probs=51.4
Q ss_pred CCChhhHHHHhcCCCcHHHHHHHHHhHHhhCCCCCcccHHHHHHhhhchhHHHHHHHh
Q psy16731 4 QKDVVQSFPIIKERDSAPPCQQVQHSAVCFGADLLPVDLILDLKSELSSELKSIIVNL 61 (282)
Q Consensus 4 gtDe~~l~~IL~~rs~~q~~~i~~~Y~~~ygk~~~~~~L~~~l~se~sG~~~~ll~~l 61 (282)
|||+..+++|+++|++.||+.|++.|+..||++ |.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~-----L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKD-----LEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc-----HHHHHHHhcChHHHHHHHhC
Confidence 799999999999999999999999999999999 99999999999999998864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.27 E-value=6e-12 Score=88.83 Aligned_cols=53 Identities=30% Similarity=0.612 Sum_probs=51.2
Q ss_pred CCccchhhhhcccCCHHHHHHHHHHHHHHhCCcHHHHHHhhccHHHHHHHHHH
Q psy16731 217 GTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAI 269 (282)
Q Consensus 217 gtde~~l~~Il~~rs~~~L~~I~~~Yk~~~g~sL~~~I~~e~sGd~~~~Llai 269 (282)
|||++.+++|+++||+.|+.+|+.+|++.||++|.++|++++||+++++|+++
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999874
No 7
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=30.39 E-value=56 Score=26.85 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=40.8
Q ss_pred hhhhcccCCHHHHHHHHHHHHHHhCCcHHHHHHhhc--------cHHHHHHHHHHHh
Q psy16731 223 INKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKEL--------SGDLLRIHLAIVI 271 (282)
Q Consensus 223 l~~Il~~rs~~~L~~I~~~Yk~~~g~sL~~~I~~e~--------sGd~~~~Llaiv~ 271 (282)
..+.|.++||.-++.+++.+++-.+.+|.++++.|+ .|||..+..|++.
T Consensus 36 ~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI 92 (118)
T PF13766_consen 36 TLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI 92 (118)
T ss_dssp HHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 345677899999999999999999999999999886 4899999999885
No 8
>PF14003 YlbE: YlbE-like protein
Probab=28.74 E-value=73 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.3
Q ss_pred hhhhhcccCCHHHHHHHHHHHHHHhCCcHHHHHHhh
Q psy16731 222 LINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKE 257 (282)
Q Consensus 222 ~l~~Il~~rs~~~L~~I~~~Yk~~~g~sL~~~I~~e 257 (282)
.+.++| +|.|.++.+.-.+++.-||+|+-+.|++-
T Consensus 13 ~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 13 IWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 455665 69999999999999999999999999853
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=24.92 E-value=4.8e+02 Score=22.94 Aligned_cols=87 Identities=14% Similarity=0.002 Sum_probs=54.4
Q ss_pred HhcCCCcHHHHHHHHHhHHhhCCCCCcccHHHHHHhhhchhHHHHHHHhcCCcHHHHHHHHHHhhcc-CCCCCChHHHHH
Q psy16731 13 IIKERDSAPPCQQVQHSAVCFGADLLPVDLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNT-LPLIKDTNTITE 91 (282)
Q Consensus 13 IL~~rs~~q~~~i~~~Y~~~ygk~~~~~~L~~~l~se~sG~~~~ll~~l~~~p~~~da~~L~~Al~~-~g~~td~~~lie 91 (282)
.-..-+.+|+++++++|+-..... -.. -..+++++++..+=.+|....+..|-..+.. .|. -|...++.
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~------~G~---I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~-idf~~Fl~ 79 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDS------DGL---IDRNELGKILRSLGFNPSEAEINKLFEEIDAGNET-VDFPEFLT 79 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCC------CCC---CcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCc-cCHHHHHH
Confidence 334568899999999998765532 000 1135788888877788999999999988875 221 35555555
Q ss_pred HhhcCC-----HHHHHHHHHHHH
Q psy16731 92 IVITKN-----STELIELNKMYM 109 (282)
Q Consensus 92 Il~~rs-----~~el~~i~~~Y~ 109 (282)
++...+ ..++....+.|-
T Consensus 80 ~ms~~~~~~~~~Eel~~aF~~fD 102 (160)
T COG5126 80 VMSVKLKRGDKEEELREAFKLFD 102 (160)
T ss_pred HHHHHhccCCcHHHHHHHHHHhC
Confidence 544322 444444444443
No 10
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=23.31 E-value=1.3e+02 Score=23.32 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHh--CCcHHHHHHh
Q psy16731 230 ESYEQLKLVFREYKNQF--GRTVEQSFRK 256 (282)
Q Consensus 230 rs~~~L~~I~~~Yk~~~--g~sL~~~I~~ 256 (282)
-+++++.++..+|+..| +.++++++++
T Consensus 28 fs~~~i~~l~~ayr~l~~~~~~~~~a~~~ 56 (83)
T PF13720_consen 28 FSKEEISALRRAYRILFRSGLTLEEALEE 56 (83)
T ss_dssp S-HHHHHHHHHHHHHHHTSSS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46789999999999998 4677877754
No 11
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=22.96 E-value=1.2e+02 Score=23.53 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=17.8
Q ss_pred CCCcHHHHHHHHHhHHhhCCC
Q psy16731 16 ERDSAPPCQQVQHSAVCFGAD 36 (282)
Q Consensus 16 ~rs~~q~~~i~~~Y~~~ygk~ 36 (282)
+-+.+++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 347899999999999999877
No 12
>KOG3426|consensus
Probab=21.15 E-value=3.9e+02 Score=22.61 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=52.1
Q ss_pred hHHHHhcCCCcHHHHHHHHHhHHhhCCCCCcccHHHHHHhhhchhHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCChHH
Q psy16731 9 QSFPIIKERDSAPPCQQVQHSAVCFGADLLPVDLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNT 88 (282)
Q Consensus 9 ~l~~IL~~rs~~q~~~i~~~Y~~~ygk~~~~~~L~~~l~se~sG~~~~ll~~l~~~p~~~da~~L~~Al~~~g~~td~~~ 88 (282)
...+|...-.++-|......|+.-|..- |- +..+ ..+-.-+....-..+.+...+-+.+||..+
T Consensus 10 ~v~Pi~S~n~~EARrrvl~~yra~~R~i--P~-~~~d-------------y~L~dm~~~~~R~~ir~qf~kn~hvTD~rV 73 (124)
T KOG3426|consen 10 IVVPINSANLTEARRRVLDLYRAWYRSI--PT-IVDD-------------YNLQDMTVSQLRDKIREQFRKNAHVTDPRV 73 (124)
T ss_pred hcCCCccCcHHHHHHHHHHHHHHHHHhc--Ch-HHHh-------------cCCcccCHHHHHHHHHHHHHhcCCcCCchh
Confidence 3445566666677777777777766543 10 1111 011111222222334444445566799887
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhh
Q psy16731 89 ITEIVITKNSTELIELNKMYMKS 111 (282)
Q Consensus 89 lieIl~~rs~~el~~i~~~Y~~~ 111 (282)
++.|+...-.||.++..++++.
T Consensus 74 -iDlLV~kg~~elkeiv~~~kqr 95 (124)
T KOG3426|consen 74 -IDLLVIKGMEELKEIVDHWKQR 95 (124)
T ss_pred -hhHHHHhhHHHHHHHHHHHhCc
Confidence 7899999999999999998876
No 13
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=20.46 E-value=78 Score=23.29 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHhCCcHHHH
Q psy16731 230 ESYEQLKLVFREYKNQFGRTVEQS 253 (282)
Q Consensus 230 rs~~~L~~I~~~Yk~~~g~sL~~~ 253 (282)
..-+.|..+..+|++++|-++.++
T Consensus 11 e~aekl~llkqayqkktgatises 34 (62)
T PF13062_consen 11 ETAEKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHHHHhhcCCccchh
Confidence 344667788889999998887654
No 14
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=20.12 E-value=4.4e+02 Score=20.78 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCccchhhhhcccCCHHHHHHHHHHHHHHhCCcH
Q psy16731 198 PAQAKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTV 250 (282)
Q Consensus 198 ~~~a~~dA~~L~~A~~g~~gtde~~l~~Il~~rs~~~L~~I~~~Yk~~~g~sL 250 (282)
...+..-+..|+..+.. +.-..|...++.=|+..+.....+++.......
T Consensus 3 ~e~V~~Aa~~L~~~G~~---pT~~~Vr~~lG~GS~~ti~~~l~~w~~~~~~~~ 52 (120)
T PF11740_consen 3 YEDVIEAADELLAAGKK---PTVRAVRERLGGGSMSTISKHLKEWREEREAQV 52 (120)
T ss_pred HHHHHHHHHHHHHcCCC---CCHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 34566668888877764 677888888998899999999999988876655
Done!