RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16731
(282 letters)
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 115 bits (290), Expect = 1e-30
Identities = 21/232 (9%), Positives = 61/232 (26%), Gaps = 57/232 (24%)
Query: 41 DLILDLKSELSS-ELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNST 99
+ I LK + + + ++ + + +A+ + D I ++V+
Sbjct: 51 EFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKN---VNDFRAIHDVVLIATPD 107
Query: 100 ELIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISV 159
E ++L + Y +
Sbjct: 108 ERLKLAQAYKE------------------------------------------------K 119
Query: 160 FNRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTE 219
L+ + +S + R T A +L +
Sbjct: 120 TGNDLLQDFVDQIPLTSAASYLCHLAIRENR-----TPRGSVASDAEVLKHNLIDADEPD 174
Query: 220 ESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVI 271
+ +++ + ++ K + ++ G++V+++ + L I
Sbjct: 175 HEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAH 226
Score = 40.2 bits (94), Expect = 4e-04
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 217 GTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKEL-SGDLLRIHLAIVIGDLQ 275
E + S E+ K + ++++ G +K + +G + ++
Sbjct: 19 AKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNIS 78
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 114 bits (287), Expect = 3e-30
Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 53/241 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
+L LKS LS L+++I+ L+ P + EL ++ L D +++ EI+ ++ + E
Sbjct: 51 ELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLG--TDEDSLIEIICSRTNQE 108
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
L E+N++Y + ++
Sbjct: 109 LQEINRVYKE------------------------------------------------MY 120
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENA-TDPAQAKQQASLLYVAGEGRRGTE 219
L ++ S +S ++ + ++ G R + + D Q A LY AG R+GT+
Sbjct: 121 KTDLEKDIIS--DTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTD 178
Query: 220 ESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTY 279
+M S L+ VF YK+ + +S RKE+ GDL L +V Y
Sbjct: 179 VPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLY 238
Query: 280 L 280
Sbjct: 239 F 239
Score = 54.1 bits (130), Expect = 1e-08
Identities = 32/236 (13%), Positives = 83/236 (35%), Gaps = 54/236 (22%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DL D+ S+ S + + ++V L ++ L +D + + + + T+
Sbjct: 123 DLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELID----QDARDLYDAGVKRKGTD 178
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRN---IWASSVFRQALFINNLTLSSLVI 157
+ + I+++ T R+ + VF + + + +
Sbjct: 179 VPKW------------ISIM----------TERSVPHLQK--VFDRYKSYSPYDMLESIR 214
Query: 158 SVFNRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRG 217
+N +++ + A LY + +G+ G
Sbjct: 215 KEV--------------KGDLENAFLNLVQCIQNK--------PLYFADRLYDSMKGK-G 251
Query: 218 TEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGD 273
T + ++ ++M S + + E+K ++G+++ +++ GD + L + GD
Sbjct: 252 TRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGD 307
Score = 51.1 bits (122), Expect = 1e-07
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
A++ A + A + + G +E I ++ + S Q + + Y+ + + + + + LSG
Sbjct: 4 AERDALNIETAIKTK-GVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSG 62
Query: 261 DLLRIHLAIVIGDLQ 275
L + L ++ Q
Sbjct: 63 HLETVILGLLKTPAQ 77
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 113 bits (283), Expect = 1e-29
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
L +LKSELS ++ + L+ P FL +L+ A+ L D N + +I+ T+++ +
Sbjct: 61 HLEDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLG--TDKNALIDILCTQSNAQ 118
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ + + ++
Sbjct: 119 IHAIKAAFKL------------------------------------------------LY 130
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
L E+ S +S +++ + S+L G R+ + + A A + A+ +Y AGEG+ GT+E
Sbjct: 131 KEDLEKEIIS--ETSGNFQRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQIGTDE 188
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
S N V+ SY QL +F EY +T+ Q+ E SGD+ LAIV Y
Sbjct: 189 SRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIENEFSGDIKNGLLAIVKSVENRFAYF 248
Query: 281 TK 282
+
Sbjct: 249 AE 250
Score = 48.0 bits (114), Expect = 1e-06
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
+++ A L A +G GT+E I ++ S Q + + +Y FG+ +E + ELSG
Sbjct: 14 SREDAETLRKAMKGI-GTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSG 72
Query: 261 DLLRIHLAIV 270
+ LA++
Sbjct: 73 NYEAAALALL 82
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 115 bits (290), Expect = 3e-29
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DLI DLK EL+ + + +IV LM PP E+ A++ + D + EI+ ++ + +
Sbjct: 68 DLIADLKYELTGKFERLIVGLMRPPAYCDAKEIKDAISGIG--TDEKCLIEILASRTNEQ 125
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ +L Y +
Sbjct: 126 MHQLVAAYKD------------------------------------------------AY 137
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
R L ++ +S H++ + +L G R+ ++ +Q LY AGE + GT+E
Sbjct: 138 ERDLEADIIG--DTSGHFQKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDE 195
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
+ ++G+ S + L+LVF EY G+ +E S R ELSGD ++ LA+V Y
Sbjct: 196 AQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVKCIRSTPEYF 255
Query: 281 TK 282
+
Sbjct: 256 AE 257
Score = 110 bits (277), Expect = 2e-27
Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 57/245 (23%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DL+ DLKSE+S +L +I+ LM PP + +L +A+ D + EI+ T+ + E
Sbjct: 411 DLMTDLKSEISGDLARLILGLMMPPAHYDAKQLKKAMEGAG--TDEKALIEILATRTNAE 468
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ +N+ Y + +
Sbjct: 469 IRAINEAYKE------------------------------------------------DY 480
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPEN-----ATDPAQAKQQASLLYVAGEGR 215
++ L + + S +S H++ + S+ TG R+ A + AQ + + G
Sbjct: 481 HKSLEDALSS--DTSGHFRRILISLATGHREEGGENLDQAREDAQVAAEILEIADTPSGD 538
Query: 216 RGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQ 275
+ + E+ ++ SY L+ VF+E+ VE + +KE+SGD+ +AIV
Sbjct: 539 KTSLETRFMTILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDAFVAIVQSVKN 598
Query: 276 PQTYL 280
+
Sbjct: 599 KPLFF 603
Score = 52.3 bits (125), Expect = 7e-08
Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 77/302 (25%)
Query: 41 DLILDLKSELSSELKSIIVNLM-----------YPPLGFLCLELNRALNTLPLIKDTNTI 89
DL D+ + S + ++V L+ + +L A D
Sbjct: 140 DLEADIIGDTSGHFQKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGT-DEAQF 198
Query: 90 TEIVITKNSTELIELNKMYMKSM---------------APIGITVLEGLGGLKPPWTTRN 134
I+ ++ L + Y+K+ + + P +
Sbjct: 199 IYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVKCIRSTPEYFAER 258
Query: 135 IWASSVFRQALFINNLTLSSLVIS---------------VFNRVLVNEVGSLRSSSSHYK 179
++ + + L + TL +++S + + L + + + +S YK
Sbjct: 259 LFKA---MKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKN--DTSGEYK 313
Query: 180 NFVTSILTGFRQPENATDPAQAKQQ-----------------------------ASLLYV 210
+ + G P A+ A L
Sbjct: 314 KTLLKLSGGDDDAAGQFFPEAAQVAYQMWELSAVARVELKGDVRPANDFNPDADAKALRK 373
Query: 211 AGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIV 270
A +G GT+E I ++ H S Q + + + +K+ FGR + + E+SGDL R+ L ++
Sbjct: 374 AMKGL-GTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGLM 432
Query: 271 IG 272
+
Sbjct: 433 MP 434
Score = 52.3 bits (125), Expect = 8e-08
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
Q A LY A +G G+++ I ++ S Q + V + YK+ +G+ + + EL+G
Sbjct: 21 PNQDAEALYTAMKGF-GSDKEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTG 79
Query: 261 DLLRIHLAIVIG 272
R+ + ++
Sbjct: 80 KFERLIVGLMRP 91
Score = 51.9 bits (124), Expect = 9e-08
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 172 RSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEESLINKVMGHES 231
+ S ++ +I+ + A LY + +G T++ + ++M S
Sbjct: 579 KEMSGDVRDAFVAIVQSVKNK--------PLFFADKLYKSMKGAG-TDDKTLTRIMVSRS 629
Query: 232 YEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGD 273
L + RE+ ++ +++ Q+ + SGD L+ LA+ G+
Sbjct: 630 EIDLLNIRREFIEKYDKSLHQAIEGDTSGDFLKALLALCGGE 671
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 110 bits (275), Expect = 2e-28
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 53/243 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DL LKSELS + + +IV LMYPP + EL+ A+ L I EI+ ++ +
Sbjct: 70 DLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLG--TKEGVIIEILASRTKNQ 127
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
L E+ K Y + +
Sbjct: 128 LREIMKAYEE------------------------------------------------DY 139
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENAT-DPAQAKQQASLLYVAGEGRRGTE 219
L ++ + +S + + + +L G R ++ DPA A Q A LY AGE RGT+
Sbjct: 140 GSSLEEDIQA--DTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEKIRGTD 197
Query: 220 ESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTY 279
E ++ S L VF EY+ +++E S + E G L L +V +Y
Sbjct: 198 EMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAMLTVVKCTQNLHSY 257
Query: 280 LTK 282
+
Sbjct: 258 FAE 260
Score = 50.4 bits (120), Expect = 2e-07
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
A LY A +G GT E I V+ S Q + + + +K QFG+ + ++ + ELSG
Sbjct: 23 PDPDAETLYKAMKGI-GTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSG 81
Query: 261 DLLRIHLAIVIG 272
R+ +A++
Sbjct: 82 KFERLIVALMYP 93
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 109 bits (273), Expect = 3e-28
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 52/242 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DL+ DLKSEL+ + ++++V+LM P F L A+ + +TEI+ ++ E
Sbjct: 63 DLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAG--TNEKVLTEILASRTPAE 120
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ + ++YM+ +
Sbjct: 121 VQNIKQVYMQ------------------------------------------------EY 132
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
L +++ +S H++ + +L R P+ D A ++ A +L+ AGE + GT+E
Sbjct: 133 EANLEDKITG--ETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDE 190
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
++G S L+ VF +Y G +E++ +E SGDL ++ LA+V Y
Sbjct: 191 ETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYF 250
Query: 281 TK 282
+
Sbjct: 251 AE 252
Score = 50.0 bits (119), Expect = 2e-07
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
A+ A L A +G GT+E I K++ + Q + + +K FGR + + EL+G
Sbjct: 16 ARADAEALRKAMKGM-GTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTG 74
Query: 261 DLLRIHLAIVIG 272
+ ++++
Sbjct: 75 KFETLMVSLMRP 86
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 109 bits (273), Expect = 4e-28
Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 52/240 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DL+ DLKSELSS + +I+ +M P + + EL RA+ D + EI+ ++N E
Sbjct: 66 DLLEDLKSELSSNFEQVILGMMTPTVLYDVQELRRAMKGAG--TDEGCLIEILASRNPEE 123
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ +N+ Y + +
Sbjct: 124 IRRINQTYQQ------------------------------------------------QY 135
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
R L ++ S +S ++ + S+ G R N D A KQ A LY AGE R GT+E
Sbjct: 136 GRSLEEDICS--DTSFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDE 193
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
++ + L VF EYK + +EQS + E SG LAIV Y
Sbjct: 194 VKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKPAYF 253
Score = 50.7 bits (121), Expect = 1e-07
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
A + A +L A +G GT+E I V+ + Q + + YK+ GR + + + ELS
Sbjct: 19 ATEDAQVLRKAMKGL-GTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSS 77
Query: 261 DLLRIHLAIV 270
+ ++ L ++
Sbjct: 78 NFEQVILGMM 87
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 108 bits (271), Expect = 7e-28
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
+L DLK +LS + ++V L+ PP F +L +++ + + + EI+ T+ S +
Sbjct: 67 ELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAG--TNEDALIEILTTRTSRQ 124
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ ++++ Y V+
Sbjct: 125 MKDISQAYYT------------------------------------------------VY 136
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
+ L +++ S +S ++ + ++ G R D AKQ A +LY AGE R GT+E
Sbjct: 137 KKSLGDDISS--ETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDE 194
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
+++ S+ QLKL F EY+N + + S + ELSG + LAIV +L
Sbjct: 195 DKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFL 254
Score = 52.6 bits (126), Expect = 4e-08
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
A + A G GT+E ++ ++ S Q +L+ +EY+ +G+ ++ + +LSG
Sbjct: 20 PSVDAEAIQKAIRGI-GTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSG 78
Query: 261 DLLRIHLAIVIG 272
+ +A+V
Sbjct: 79 HFEHLMVALVTP 90
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 107 bits (269), Expect = 2e-27
Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 52/242 (21%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
L LK L+ L+ + + L+ P F EL A+ L D +T+ EI+ ++ + E
Sbjct: 91 PLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLG--TDEDTLNEILASRTNRE 148
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ E+N++Y +
Sbjct: 149 IREINRVYKE------------------------------------------------EL 160
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
R L ++ S +S Y+ + S+ G R + A + A A LY AGE R+GT+
Sbjct: 161 KRDLAKDITS--DTSGDYQKALLSLAKGDRSEDLAINDDLADTDARALYEAGERRKGTDL 218
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
++ ++ SY L+ VF++Y + + EL GD+ +V +
Sbjct: 219 NVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLELKGDIENCLTVVVKCATSKPMFF 278
Query: 281 TK 282
+
Sbjct: 279 AE 280
Score = 48.8 bits (116), Expect = 6e-07
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
L+ A + G +E+ I +++ + Q + + Y + G+ ++++ +K L+G
Sbjct: 44 PSSDVEALHKAITVK-GVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTG 102
Query: 261 DLLRIHLAIVIG 272
L + LA++
Sbjct: 103 HLEEVALALLKT 114
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 107 bits (268), Expect = 2e-27
Identities = 35/240 (14%), Positives = 81/240 (33%), Gaps = 53/240 (22%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
DL+ L ELS++ + +++ P L N A + EI T+++ +
Sbjct: 65 DLLKALDKELSNDFERLVLLWALDPAERDALLANEATKRWT--SSNQVLMEIACTRSANQ 122
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
L+ + Y +
Sbjct: 123 LLHARQAYHA------------------------------------------------RY 134
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEE 220
+ L +V ++ + + +++ +R + AK +A LL+ + +++
Sbjct: 135 KKSLEEDVAH--HTTGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYSDD 192
Query: 221 SLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTYL 280
+I V+ S Q+ YKN++G + + + + + L + + V + P+ Y
Sbjct: 193 DVIR-VLATRSKAQINATLNHYKNEYGNDINKDLKADPKDEFLALLRSTVKCLVYPEKYF 251
Score = 50.3 bits (120), Expect = 2e-07
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 178 YKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKL 237
+ + T + P ++ L A G GT E LI ++GH + EQ L
Sbjct: 3 HHHHATLTV-----PTTVPSVSED---CEQLRKAFSGW-GTNEGLIIDILGHRNAEQRNL 53
Query: 238 VFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIG 272
+ + Y +G + ++ KELS D R+ L +
Sbjct: 54 IRKTYAETYGEDLLKALDKELSNDFERLVLLWALD 88
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 101 bits (252), Expect = 3e-25
Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 59/240 (24%)
Query: 41 DLILDLKSELSSEL-KSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNST 99
+L D+K L +S++++L + AL+ D + VI
Sbjct: 49 ELPDDIKKALKGGSEESLLMDLFSDRHEVRAQHIRDALSGR---NDHMAFFDTVILCTPE 105
Query: 100 ELIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISV 159
+ E Y + +
Sbjct: 106 DWHETVAAYTR------------------------------------------------M 117
Query: 160 FNRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRRGTE 219
F + LV + ++ + E + P + +A L A + +
Sbjct: 118 FKKPLVEDFMK--DVGRKED--WCLLMEKWMAHERVSRPGSPEDEAQRLDQAFDQK---N 170
Query: 220 ESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRIHLAIVIGDLQPQTY 279
+ + G + + + +K Q G+++EQ+ + L
Sbjct: 171 TAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIATIYTKTDYYTFYCAHFALLGMHRL 230
Score = 45.6 bits (108), Expect = 8e-06
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 201 AKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSG 260
A+ L A + +E I + S E + + + Y +G+ + +K L G
Sbjct: 4 VTDIANELKQAIDA---KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKG 60
Query: 261 DLLR 264
Sbjct: 61 GSEE 64
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 90.4 bits (224), Expect = 3e-21
Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 56/233 (24%)
Query: 41 DLILDLKSELSSELKSIIVNLMYPPLGFLCLELNRALNTLPLIKDTNTITEIVITKNSTE 100
L LK LS + +S+++ L P LC + A D + ++++T + E
Sbjct: 58 FLDAFLKKHLSKDFESLVLMLYKPRAQLLCELIRGATKGAG--TDEKCLVDVLLTIETHE 115
Query: 101 LIELNKMYMKSMAPIGITVLEGLGGLKPPWTTRNIWASSVFRQALFINNLTLSSLVISVF 160
+ E+ ++Y + ++
Sbjct: 116 VREIRQLYYQ------------------------------------------------LY 127
Query: 161 NRVLVNEVGSLRSSSSHYKNFVTSILTGFRQPENATDPAQAKQQASLLYVAGEGRR--GT 218
N L + V + + ++ TG R P D + ++ L+ A E +
Sbjct: 128 NDSLGDVVRKDCGDKYMWAKLINAVATGDRIPR---DTHELEEDLVLVRKAIETKGVKKD 184
Query: 219 EESLINKVMGHESYEQLKLVFREYKNQF-GRTVEQSFRKELSGDLLRIHLAIV 270
E S ++ + + + + Y ++ G ++ E G
Sbjct: 185 EVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGVEDEFQGLDEYAFKLAH 237
Score = 43.8 bits (103), Expect = 3e-05
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 205 ASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLR 264
L+ A +G GT+E + V+ +++ + + Y + ++ RK+ +
Sbjct: 87 CELIRGATKGA-GTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVRKDCGDKYMW 145
Query: 265 IHLAIVIG 272
L +
Sbjct: 146 AKLINAVA 153
Score = 41.5 bits (97), Expect = 2e-04
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 195 ATDPAQAKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSF 254
+T Q+ LI + QL+ + R ++ G ++
Sbjct: 9 STGVTAVVQKVV----EACQDESKRLDLIE-IARSYPPNQLRNMQRTFQAITGTFLDAFL 63
Query: 255 RKELSGDLLRIHLAIV 270
+K LS D + L +
Sbjct: 64 KKHLSKDFESLVLMLY 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 2e-05
Identities = 69/388 (17%), Positives = 122/388 (31%), Gaps = 152/388 (39%)
Query: 3 SQKDVVQSF---------PIIKERDSAPPCQQVQHSA-------VCF---GADLLPVDLI 43
K++++++ P K+ +SA + F G +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEGNAQLVAIFGGQGNTDDYFE-- 171
Query: 44 LDLKSELSSELKSIIVNLMYPPL-GFLCLELNRALNTL-PLIKDTNTITEIVITK--NST 99
EL +L Y L G L + + TL LI+ T E V T+ N
Sbjct: 172 -----ELR-DLYQT-----YHVLVGDL---IKFSAETLSELIRTTLD-AEKVFTQGLNIL 216
Query: 100 ELIEL-----NKMYMKSMAP-----IGIT------VLEGLGGLKPPWTTRNIWASSVFRQ 143
E +E +K Y+ S P IG+ V L G P + ++ Q
Sbjct: 217 EWLENPSNTPDKDYLLS-IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 144 ALFINNLTLSSLVISVFNRVLVNEVGSLRSSS--SHYKNFVTSI----LTGFR-Q---PE 193
L ++++ I+ + S S + + +I G R P
Sbjct: 276 GL------VTAVAIAE-------------TDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 194 NATDPAQAKQ-------QAS-LLYVAGEGRRGTEE-----------------SLINK--- 225
+ P+ + S +L ++ + ++ SL+N
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 226 --VMGH-ESYEQLKLVFREYKNQFGRTVEQS---F--RK--------------------- 256
V G +S L L R+ K G ++QS F RK
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSG--LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 257 ---ELSGDLLRIHLAIVIGDLQPQTYLT 281
++ DL++ +++ D+Q Y T
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Score = 41.6 bits (97), Expect = 3e-04
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 51/157 (32%)
Query: 147 INNLTLSSLVISVFNRVLVNEVGSLR-----SSSSHYKNFVTSILT-GFRQ--PENATDP 198
++ + L +S GSL ++S F+ S L F + PE
Sbjct: 1 MDAYSTRPLTLSH---------GSLEHVLLVPTASF---FIASQLQEQFNKILPEPTEGF 48
Query: 199 AQAKQQAS--------LLYVAGEGRRGTEESLINKVMGHESYEQ-LKLVFREYKNQF--G 247
A + + L YV+ ++Q L L E++N + G
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQ----------FDQVLNLCLTEFENCYLEG 98
Query: 248 R---TVEQSFRKELSGDLLRIHLAIVIGDLQPQTYLT 281
+ +E L++ I + Y+T
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELI-------KNYIT 128
Score = 37.7 bits (87), Expect = 0.004
Identities = 50/277 (18%), Positives = 80/277 (28%), Gaps = 106/277 (38%)
Query: 23 CQQVQHSAVCFGADLLPVDLILDLKSE--------LS------SELKSII--VNLMYPPL 66
C + + LP ++ D LS +++ + N P
Sbjct: 310 CYE------AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA- 362
Query: 67 GFLCLELNRALNTLPLIKDTNTITEIVITKNSTELIELNKMYMKSMAPIG---------- 116
+ + + L+ N +V++ L LN K+ AP G
Sbjct: 363 -------GKQVE-ISLV---NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 117 -----------ITV-----LEGLGGLKPPWTTRNIWASSVFRQALFINNLTL--SSLVIS 158
+ L L P AS + + L NN++ + I
Sbjct: 412 RKLKFSNRFLPVASPFHSHL-----LVP--------ASDLINKDLVKNNVSFNAKDIQIP 458
Query: 159 VFNRVLVNEVGS-LRS-SSSHYKNFVTSILTGFRQP---ENATD----------PAQAKQ 203
V++ GS LR S S + V I R P E T P A
Sbjct: 459 VYD----TFDGSDLRVLSGSISERIVDCI---IRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 204 QASLLY--VAGEGRR----GTEESLINKVMGHESYEQ 234
L + G G R GT + + G ++Q
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDINPDDDYG---FKQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 49/391 (12%), Positives = 108/391 (27%), Gaps = 155/391 (39%)
Query: 5 KDVVQSF--PIIKERDSAPPCQQVQHSAVCFGADLLP-------VDLILDLKSELSSELK 55
KD++ F + D C+ VQ D+ +D I+ K +S L+
Sbjct: 19 KDILSVFEDAFVDNFD----CKDVQ--------DMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 56 SIIVNLMYPPLG---FL--CLELN-----RALNTLPLIKDTNTITEIVITK-----NSTE 100
L F+ L +N + T + + +T + I + N +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRLYNDNQ 124
Query: 101 LI------------ELNKMYMKSMAPIGITVLEGLGG----------------------- 125
+ +L + + + P +++G+ G
Sbjct: 125 VFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 126 -------------------------LKPPWTTR-----NI-----WASSVFRQALFINNL 150
+ P WT+R NI + R+ L +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKP 242
Query: 151 TLSSL----------VISVFN---RVLV----NEVGSLRSSSSHYKNFVTSILTGFRQPE 193
+ L + FN ++L+ +V S+++ + E
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 194 -----------NATD-PAQAKQQASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFRE 241
D P + + ++ ES+ + + ++++ +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIA-----ESIRDGLATWDNWKHVN----- 351
Query: 242 YKNQFGRTVEQSFRKELSGDLLRIH---LAI 269
++ +E S L R L++
Sbjct: 352 -CDKLTTIIESSL-NVLEPAEYRKMFDRLSV 380
Score = 31.4 bits (70), Expect = 0.39
Identities = 56/316 (17%), Positives = 103/316 (32%), Gaps = 73/316 (23%)
Query: 5 KDVVQSFPI-----IKERDSAPPCQQVQHSAVCFGADLLP------VDLILDLKSELSSE 53
+F + + R QV D L + L + E
Sbjct: 256 AKAWNAFNLSCKILLTTRFK-----QV--------TDFLSAATTTHISLDHHSMTLTPDE 302
Query: 54 LKSIIVNLMYPPLGFLCLEL-NRALNTLPLIKDTNTITEIVITKNST----ELIELNKMY 108
+KS+++ L +L L T P + I E + +T + + +K+
Sbjct: 303 VKSLLLKY----LDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKL- 355
Query: 109 MKSMAPIGITVLE-GLGGLKPPWTTRNIWASSVFRQALFINNLTLSSL---VISVFNRVL 164
T++E L L+P + SVF + I + LS + VI V+
Sbjct: 356 --------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 165 VNEVGSLRSSS---SHYKNFVTSILTGFRQPENATDPAQAKQQASLL--YVAGEGRRGTE 219
VN+ L S K SI + + + + S++ Y + +
Sbjct: 408 VNK---LHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 220 ESL------INKVMGH-----ESYEQLKLVFRE-YKNQFGRTVEQSFRKELSGDLLRIHL 267
+GH E E++ L FR + + F R +EQ R + + +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLD-F-RFLEQKIRHDSTAWNASGSI 520
Query: 268 AIVIGDLQP-QTYLTK 282
+ L+ + Y+
Sbjct: 521 LNTLQQLKFYKPYICD 536
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.056
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 191 QPENAT-DPAQAKQ----QASLLYVAGEGRRGTEESLINKVMGHESYEQLKLVFREYKNQ 245
Q + T +P ++ Q L + E+ K + + L+ + Q
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK-----AKKDLEEWNQRQSEQ 130
Query: 246 FG------RTVEQSFRKELSGDLL 263
R +++F ++ D++
Sbjct: 131 VEKNKINNRIADKAFYQQPDADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 96 KNSTELIE--LNKMYMKSMAP---IGITV 119
K + + ++ L K+Y AP I T+
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKATM 46
>3bgy_A Polynucleotide 5'-triphosphatase; RNA capping, tunnel
triphsophatase, metalloenzyme, beta barrel, hydrolase,
mRNA capping; 1.65A {Acanthamoeba polyphaga mimivirus}
PDB: 2qy2_A* 2qze_A
Length = 237
Score = 27.1 bits (59), Expect = 5.5
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 214 GRRGTEESLINKVMGHESYEQLKLVFREYKNQFGRTVEQSFRKELSGDLLRI 265
G + + + + Y ++ + R+Y N E SF+ + +RI
Sbjct: 2 GTKLKKSNNDITIFSENEYNEIVEMLRDYSNGDNLEFEVSFKNINYPNFMRI 53
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase,
NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB:
1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A*
2cmj_A* 2cmv_A*
Length = 413
Score = 26.6 bits (58), Expect = 9.4
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 94 ITKNSTELIELNKMYMKSMA-PIGITVLEGLGGLK----PPWTTRNIWASSVFRQALFIN 148
+T +S + + +K +E K P T RNI +VFR+ +
Sbjct: 57 VTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICK 116
Query: 149 NLTLS 153
N+
Sbjct: 117 NIPRL 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.379
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,928,875
Number of extensions: 220771
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 75
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)