Query psy16739
Match_columns 129
No_of_seqs 134 out of 1160
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:44:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cx6_A Hypothetical protein YH 25.9 47 0.0016 21.0 2.5 26 68-93 19-44 (90)
2 2za4_B Barstar; protein-protei 23.0 58 0.002 20.4 2.5 26 68-93 19-44 (90)
3 1ty4_C Egg laying defective EG 20.9 51 0.0018 19.5 1.7 28 58-85 27-57 (57)
4 2l2o_A UPF0727 protein C6ORF11 17.8 36 0.0012 22.2 0.6 33 53-85 30-67 (89)
5 2bn5_A PSI; nuclear protein, s 13.1 35 0.0012 18.1 -0.3 12 118-129 3-14 (33)
6 2krh_A Actin-binding RHO-activ 9.6 93 0.0032 20.0 0.8 27 58-84 43-71 (85)
7 2bnl_A Modulator protein RSBR; 6.1 2E+02 0.0069 19.9 1.2 40 61-101 45-84 (136)
8 2l76_A Nfatc2-interacting prot 5.7 1.6E+02 0.0056 19.1 0.5 20 73-92 36-55 (95)
9 4dac_A Computationally designe 5.4 1.8E+02 0.0063 14.3 0.5 8 66-73 20-27 (28)
10 2od8_B DNA ligase I, mitochond 5.0 4E+02 0.014 12.9 1.6 13 27-39 4-16 (26)
No 1
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=25.90 E-value=47 Score=21.03 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=23.0
Q ss_pred HHHhhhCCCCCCcccchhhhhHHHHH
Q psy16739 68 GHAARYFNQSTKFGAMLDQLTDRVGT 93 (129)
Q Consensus 68 G~lAR~~~~~S~~G~~LD~~~D~i~~ 93 (129)
-.+|+.++-..-+|+-+|.+.|-+..
T Consensus 19 ~~~~~~~~~p~~fG~NlDAL~D~Lt~ 44 (90)
T 2cx6_A 19 RDFSQTFGLAKDKVRDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHHTTCCTTSCSSHHHHHHHHHT
T ss_pred HHHHHHhCCchhhCCCHHHHHHHHcc
Confidence 46799999999999999999998874
No 2
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=23.03 E-value=58 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHhhhCCCCCCcccchhhhhHHHHH
Q psy16739 68 GHAARYFNQSTKFGAMLDQLTDRVGT 93 (129)
Q Consensus 68 G~lAR~~~~~S~~G~~LD~~~D~i~~ 93 (129)
-.++|.++-..-+|+-+|.+.|-+..
T Consensus 19 ~~l~~~l~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 19 QTLKKELALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHHTTCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCCCHHHHHHHhcC
Confidence 46789999989999999999999887
No 3
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=20.90 E-value=51 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=12.2
Q ss_pred HHHHHHhHHHHHH---hhhCCCCCCcccchh
Q psy16739 58 VISGLLDAIDGHA---ARYFNQSTKFGAMLD 85 (129)
Q Consensus 58 ~l~~~~D~lDG~l---AR~~~~~S~~G~~LD 85 (129)
-++..+|-+|-++ +|+-...|-+|+++|
T Consensus 27 KL~~MCDdFDaeMMSys~~~tsrSLl~r~~d 57 (57)
T 1ty4_C 27 KLAAMCDDFDAQMMSYSAHASDRSLFHRLLD 57 (57)
T ss_dssp HHHHHHHHHHHHHGGGSCCC-----------
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHhcC
Confidence 4667789999887 455444566777766
No 4
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown function; NMR {Homo sapiens}
Probab=17.83 E-value=36 Score=22.17 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=25.9
Q ss_pred HHHHH---HHHHHHhHHHHHH--hhhCCCCCCcccchh
Q psy16739 53 ACWCY---VISGLLDAIDGHA--ARYFNQSTKFGAMLD 85 (129)
Q Consensus 53 a~~l~---~l~~~~D~lDG~l--AR~~~~~S~~G~~LD 85 (129)
+..+| ..+.++|.+-|++ |||.+..+--|+.|=
T Consensus 30 FG~LF~dd~~~ni~e~LVGtL~~ArK~k~V~FeGEmL~ 67 (89)
T 2l2o_A 30 FGVLFRDDKSANLFEALVGTLKAAKRRKIVTYPGELLL 67 (89)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHHHHTTSEECSCSCCS
T ss_pred eeeeecchHHhhHHHHHHHHHHHHHhcCceeeccceEe
Confidence 55666 7788899999998 888888877777663
No 5
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=13.11 E-value=35 Score=18.15 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.3
Q ss_pred HHHHhhHhhhcC
Q psy16739 118 DIACHWIYLHSN 129 (129)
Q Consensus 118 ~i~~~w~~~~~~ 129 (129)
|+...|++.|+|
T Consensus 3 DYSaQW~eYYrs 14 (33)
T 2bn5_A 3 DYSAQWAEYYRS 14 (33)
T ss_dssp TTHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 567889988864
No 6
>2krh_A Actin-binding RHO-activating protein; muscle, stress response, cardiac, actin-bindi cytoskeleton, actin-binding protein; NMR {Rattus norvegicus}
Probab=9.57 E-value=93 Score=19.97 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=20.9
Q ss_pred HHHHHHhHHHHHH--hhhCCCCCCcccch
Q psy16739 58 VISGLLDAIDGHA--ARYFNQSTKFGAML 84 (129)
Q Consensus 58 ~l~~~~D~lDG~l--AR~~~~~S~~G~~L 84 (129)
.-+.++|.+-|++ ||+.+..+--|+.|
T Consensus 43 ~~~~i~e~lvGtL~~ArK~~~V~FeGEmL 71 (85)
T 2krh_A 43 RYVRISDKVVGILMRARKHGLVHFEGEML 71 (85)
T ss_dssp HHTTTTSCHHHHHHHHHTTSCBCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCceeecCcee
Confidence 3456788888988 88888888777766
No 7
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=6.10 E-value=2e+02 Score=19.86 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=31.7
Q ss_pred HHHhHHHHHHhhhCCCCCCcccchhhhhHHHHHHHHHHHHH
Q psy16739 61 GLLDAIDGHAARYFNQSTKFGAMLDQLTDRVGTMCLCVTLS 101 (129)
Q Consensus 61 ~~~D~lDG~lAR~~~~~S~~G~~LD~~~D~i~~~~~~~~l~ 101 (129)
-.-|++|=-+++-.+ .+++.+.++.+++|+.-+.-.+.+.
T Consensus 45 ts~Efv~lils~i~~-~~~~~e~l~~Faer~VqlGwpL~~l 84 (136)
T 2bnl_A 45 ISKEYIDILLLSVKD-ENAAESQISELALRAVQIGLSMKFL 84 (136)
T ss_dssp HHHHHHHHHHTCSSC-TTTTHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHHHHccc-chhHHHHHHHHHHHHHHcCCcHHHH
Confidence 345788888888888 8999999999999997765555443
No 8
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=5.69 E-value=1.6e+02 Score=19.10 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=16.1
Q ss_pred hCCCCCCcccchhhhhHHHH
Q psy16739 73 YFNQSTKFGAMLDQLTDRVG 92 (129)
Q Consensus 73 ~~~~~S~~G~~LD~~~D~i~ 92 (129)
+.+.++++.+.+|..|+|..
T Consensus 36 kIK~tt~l~KL~~aYc~r~g 55 (95)
T 2l76_A 36 PLRMSEPLQSVVDHMATHLG 55 (95)
T ss_dssp EECSSSCTHHHHHHHHHHHT
T ss_pred EEecCChHHHHHHHHHhhcC
Confidence 34678999999999998863
No 9
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=5.41 E-value=1.8e+02 Score=14.35 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=4.9
Q ss_pred HHHHHhhh
Q psy16739 66 IDGHAARY 73 (129)
Q Consensus 66 lDG~lAR~ 73 (129)
+.|.+||.
T Consensus 20 legevarl 27 (28)
T 4dac_A 20 LEGEVARL 27 (28)
T ss_dssp HHHHTTTC
T ss_pred hhhhhhhc
Confidence 56666663
No 10
>2od8_B DNA ligase I, mitochondrial precursor; homotrimer, PCNA-peptide complex, PCNA, protein binding; HET: DNA; 2.80A {Saccharomyces cerevisiae}
Probab=4.99 E-value=4e+02 Score=12.87 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHH
Q psy16739 27 RYFNQSYGRIVLA 39 (129)
Q Consensus 27 ~PN~iT~~Ri~l~ 39 (129)
.|.+-|+.|+...
T Consensus 4 kpkqatlarffts 16 (26)
T 2od8_B 4 KPKQATLARFFTS 16 (26)
T ss_pred ChhHhHHHHHHHH
Confidence 5777777776653
Done!