Query psy16739
Match_columns 129
No_of_seqs 134 out of 1160
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 20:45:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cx6a1 c.9.1.1 (A:1-90) Hypot 17.7 41 0.003 20.0 2.5 25 69-93 20-44 (90)
2 d1ay7b_ c.9.1.1 (B:) Barstar ( 11.7 75 0.0054 18.6 2.5 26 68-93 18-43 (89)
3 d1nc8a_ g.40.1.1 (A:) HIV nucl 7.2 35 0.0026 16.3 -0.4 15 67-81 15-29 (29)
4 d2hxva1 c.71.1.2 (A:148-345) R 5.7 49 0.0036 21.7 -0.4 16 66-81 11-26 (198)
5 d1mxaa1 d.130.1.1 (A:1-102) S- 5.5 1.4E+02 0.0099 18.0 1.7 21 80-100 11-31 (102)
6 d2hiqa1 d.58.4.12 (A:9-104) Hy 4.8 1.5E+02 0.011 17.6 1.5 27 62-88 61-89 (96)
7 d2p02a1 d.130.1.1 (A:38-147) S 4.3 1.8E+02 0.013 17.6 1.7 19 82-100 13-31 (110)
8 d2a5yb1 a.4.5.80 (B:386-543) C 4.3 41 0.003 21.5 -1.6 25 60-84 35-59 (158)
9 d2al6a2 b.55.1.5 (A:254-363) F 4.2 1.6E+02 0.012 17.9 1.4 13 59-71 84-96 (110)
10 d1w79a1 e.3.1.3 (A:1-467) D-al 4.2 1.4E+02 0.0099 22.1 1.1 17 66-82 390-406 (467)
No 1
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=17.66 E-value=41 Score=20.01 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=22.1
Q ss_pred HHhhhCCCCCCcccchhhhhHHHHH
Q psy16739 69 HAARYFNQSTKFGAMLDQLTDRVGT 93 (129)
Q Consensus 69 ~lAR~~~~~S~~G~~LD~~~D~i~~ 93 (129)
.+|+.++-..-+|+-+|.+-|-+..
T Consensus 20 ~~~~~l~fp~~fG~NlDAl~D~lt~ 44 (90)
T d2cx6a1 20 DFSQTFGLAKDKVRDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHT
T ss_pred HHHHHcCCcchhCCCHHHHHHHHcc
Confidence 5689999999999999999998864
No 2
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=11.75 E-value=75 Score=18.59 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.2
Q ss_pred HHHhhhCCCCCCcccchhhhhHHHHH
Q psy16739 68 GHAARYFNQSTKFGAMLDQLTDRVGT 93 (129)
Q Consensus 68 G~lAR~~~~~S~~G~~LD~~~D~i~~ 93 (129)
=.++++++...-+|+-+|.+-|-+..
T Consensus 18 ~~~~~~l~~p~~~G~N~DAl~D~ltd 43 (89)
T d1ay7b_ 18 QTLKKELALPEYYGENLDALWDCLTG 43 (89)
T ss_dssp HHHHHHTTCCTTCCSSHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCCCHHHHHHHHcC
Confidence 35788999999999999999997654
No 3
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=7.18 E-value=35 Score=16.28 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=9.0
Q ss_pred HHHHhhhCCCCCCcc
Q psy16739 67 DGHAARYFNQSTKFG 81 (129)
Q Consensus 67 DG~lAR~~~~~S~~G 81 (129)
+|.+||......+.|
T Consensus 15 eGH~ar~CrAPRkkg 29 (29)
T d1nc8a_ 15 EGHSARQCRAPRRQG 29 (29)
T ss_dssp BSSCGGGCCSSSSCC
T ss_pred cchhhhhccCcccCC
Confidence 466777776554433
No 4
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=5.72 E-value=49 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHHHHhhhCCCCCCcc
Q psy16739 66 IDGHAARYFNQSTKFG 81 (129)
Q Consensus 66 lDG~lAR~~~~~S~~G 81 (129)
+||++|+..+.+.-..
T Consensus 11 lDG~ia~~~g~~~wit 26 (198)
T d2hxva1 11 LDGKIADHRGDSKWIT 26 (198)
T ss_dssp TTSEEECTTSCCTTSC
T ss_pred CCCCeECCCCCCCcCC
Confidence 6999999888755444
No 5
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=5.50 E-value=1.4e+02 Score=17.97 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=14.3
Q ss_pred cccchhhhhHHHHHHHHHHHH
Q psy16739 80 FGAMLDQLTDRVGTMCLCVTL 100 (129)
Q Consensus 80 ~G~~LD~~~D~i~~~~~~~~l 100 (129)
--..-|-+||+++...+=..+
T Consensus 11 s~GHPDKicDqISDaIlD~~L 31 (102)
T d1mxaa1 11 SEGHPDKIADQISDAVLDAIL 31 (102)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 334578899999887664443
No 6
>d2hiqa1 d.58.4.12 (A:9-104) Hypothetical protein YdhR {Escherichia coli [TaxId: 562]}
Probab=4.76 E-value=1.5e+02 Score=17.60 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHhHHHHHHhhhCC--CCCCcccchhhhh
Q psy16739 62 LLDAIDGHAARYFN--QSTKFGAMLDQLT 88 (129)
Q Consensus 62 ~~D~lDG~lAR~~~--~~S~~G~~LD~~~ 88 (129)
.-.++||+.||..+ .+..-++.+|...
T Consensus 61 ae~y~~~~~~rl~~~~~~~i~~k~Fdv~e 89 (96)
T d2hiqa1 61 ALAYLEKHTARLKNLGVEEVVAKVFDVNE 89 (96)
T ss_dssp HHHHHHHHHHHHGGGTCCCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCCCcceEEEEeccC
Confidence 34578999999774 5778888888654
No 7
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=4.34 E-value=1.8e+02 Score=17.61 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=13.4
Q ss_pred cchhhhhHHHHHHHHHHHH
Q psy16739 82 AMLDQLTDRVGTMCLCVTL 100 (129)
Q Consensus 82 ~~LD~~~D~i~~~~~~~~l 100 (129)
..-|-+||.++...+=..+
T Consensus 13 GHPDKicDqISDailD~~l 31 (110)
T d2p02a1 13 GHPDKICDQISDAVLDAHL 31 (110)
T ss_dssp TSHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhHHHHHHH
Confidence 3568888888887665444
No 8
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.33 E-value=41 Score=21.48 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHhhhCCCCCCcccch
Q psy16739 60 SGLLDAIDGHAARYFNQSTKFGAML 84 (129)
Q Consensus 60 ~~~~D~lDG~lAR~~~~~S~~G~~L 84 (129)
+.--|-+|..+|-|++.-|+-|+.|
T Consensus 35 snee~qlddevadrlkrlskrgall 59 (158)
T d2a5yb1 35 SNEEEQLDDEVADRLKRLSKRGALL 59 (158)
T ss_dssp ----CCCTHHHHHHHHHTTTBSSCS
T ss_pred CChHhhhhHHHHHHHHHHHhccchh
Confidence 3345778899999988888888765
No 9
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.21 E-value=1.6e+02 Score=17.92 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=10.1
Q ss_pred HHHHHhHHHHHHh
Q psy16739 59 ISGLLDAIDGHAA 71 (129)
Q Consensus 59 l~~~~D~lDG~lA 71 (129)
...+.|.+|||.=
T Consensus 84 Ae~lAdLIdGYCr 96 (110)
T d2al6a2 84 AENMADLIDGYCR 96 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhheEE
Confidence 4567899999973
No 10
>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]}
Probab=4.16 E-value=1.4e+02 Score=22.08 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.6
Q ss_pred HHHHHhhhCCCCCCccc
Q psy16739 66 IDGHAARYFNQSTKFGA 82 (129)
Q Consensus 66 lDG~lAR~~~~~S~~G~ 82 (129)
+||++++|+..+...|+
T Consensus 390 vdGTL~~R~~~~~~~g~ 406 (467)
T d1w79a1 390 VGGTLANRMRGTAAEGV 406 (467)
T ss_dssp HHGGGTTSSTTSTTTTT
T ss_pred CCCchhhhccCCCcCCe
Confidence 89999999876554443
Done!