RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16739
(129 letters)
>gnl|CDD|216278 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase.
All of these members have the ability to catalyze the
displacement of CMP from a CDP-alcohol by a second
alcohol with formation of a phosphodiester bond and
concomitant breaking of a phosphoride anhydride bond.
Length = 97
Score = 54.9 bits (133), Expect = 5e-11
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 SYGRIVLALISFYFMPTHYA--IACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTD 89
+ R++L L++ + +A +++ LLD +DG AR QS+ GA+LD + D
Sbjct: 9 TLLRLILGLLAALLLLLGQYLLLAALLLLLAVLLDGLDGKLARRTGQSSPLGALLDSVAD 68
Query: 90 RVGTMCLCVTLSTFYP 105
R+ + L + L
Sbjct: 69 RLSDVALLLGLLLIRL 84
Score = 30.3 bits (69), Expect = 0.10
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 7 IACWCYVISGLLDAIDGHAARYFNQS 32
+A +++ LLD +DG AR QS
Sbjct: 31 LAALLLLLAVLLDGLDGKLARRTGQS 56
>gnl|CDD|223632 COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid
metabolism].
Length = 192
Score = 55.8 bits (135), Expect = 1e-10
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 37 VLALISFYFMPTHYAIACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRVGTMCL 96
+ AL+ +A ++++ L DA+DG+ AR + Q ++FGA LD + D++ L
Sbjct: 28 LFALLLLLPGLGLLLLALVLFLLAALTDALDGYLARKWGQVSRFGAFLDPVADKLLDAAL 87
Query: 97 CVTLSTFYPK-YQFLFQLSMAIDIA 120
+ L P +L L +A +I
Sbjct: 88 LLGLVALGPVSPLWLAILILAREIL 112
Score = 30.4 bits (69), Expect = 0.18
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 4 HYAIACWCYVISGLLDAIDGHAARYFNQS 32
+A ++++ L DA+DG+ AR + Q
Sbjct: 40 LLLLALVLFLLAALTDALDGYLARKWGQV 68
>gnl|CDD|224104 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
Length = 234
Score = 40.0 bits (94), Expect = 9e-05
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 36 IVLALISFYFMPTH-YAIACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRV 91
+ L L+S + A +++ +LD +DG AR N + FGA LD L D V
Sbjct: 20 LFLGLLSIVAALEGRFEAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLV 76
Score = 28.8 bits (65), Expect = 0.72
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 4 HYAIACWCYVISGLLDAIDGHAARYFNQ---------------SYGRI-VLALISFYFMP 47
+ A +++ +LD +DG AR N S+G L L S
Sbjct: 34 RFEAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVSFGVAPALLLYSSGLNT 93
Query: 48 THYA-IACWCYVISGLL-----DAIDGHAARYF 74
+A YV+ G L + +F
Sbjct: 94 GPLGLLAALLYVLCGALRLARFNVKTNDDKNFF 126
>gnl|CDD|182763 PRK10832, PRK10832, phosphatidylglycerophosphate synthetase;
Provisional.
Length = 182
Score = 39.4 bits (92), Expect = 1e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 38 LALISFY----FMPTHYA--IACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRV 91
+ LI F+ ++P +A + + ++ + D DG AR +NQST+FGA LD + D+V
Sbjct: 14 VILIPFFVLVFYLPFTWAPFVCALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKV 73
>gnl|CDD|232991 TIGR00473, pssA, CDP-diacylglycerol--serine
O-phosphatidyltransferase. This enzyme,
CDP-diacylglycerol--serine O-phosphatidyltransferase, is
involved in phospholipid biosynthesis catalyzing the
reaction CDP-diacylglycerol + L-serine = CMP +
L-1-phosphatidylserine. Members of this family do not
bear any significant sequence similarity to the
corresponding E.coli protein [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 151
Score = 38.6 bits (90), Expect = 2e-04
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 41 ISFYFMPTHYAI------ACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRVGTM 94
F+ + AC+ ++S D +DG AR N+ + FG LD L D V
Sbjct: 5 AFSGFLSILSLLRYTIVRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFG 64
Query: 95 CLCVTLSTFYPKYQFLFQLSMAIDIAC 121
L+ +Q + L A+ C
Sbjct: 65 VAPAALAYSIGNFQTIGILVAALFFLC 91
>gnl|CDD|233024 TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase. Alternate names:
phosphatidylglycerophosphate synthase; glycerophosphate
phosphatidyltransferase; PGP synthase. A number of
related enzymes are quite similar in both sequence and
catalytic activity, including Saccharamyces cerevisiae
YDL142c, now known to be a cardiolipin synthase. There
may be problems with incorrect transitive annotation of
near homologs as authentic
CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase [Fatty acid and phospholipid
metabolism, Biosynthesis].
Length = 182
Score = 36.2 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 36 IVLALISFYFMPTHYAIACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRV 91
I+ L + + I ++ + + D +DG+ AR +NQ + FG LD L D+V
Sbjct: 19 ILFFLENVLPIQVSPFIGALLFIFAAVTDWLDGYLARKWNQVSNFGKFLDPLADKV 74
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 33.1 bits (76), Expect = 0.030
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 61 GLLDAIDGHAARYFNQSTKFGAMLDQLTDRVGTMCLCVTLST 102
LL A G ++ +FG++ D+L DR GT L ++LST
Sbjct: 132 RLLRAARGGRFDALHERFQFGSIADRLADRFGTRGLPISLST 173
>gnl|CDD|178391 PLN02794, PLN02794, cardiolipin synthase.
Length = 341
Score = 31.4 bits (71), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 59 ISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRVGTMCLCVTL 100
ISG D +DG+ AR ++ G+ LD L D+V C+ + +
Sbjct: 177 ISGASDWLDGYVARKMGINSVVGSYLDPLADKVLIGCVALAM 218
>gnl|CDD|140328 PTZ00307, PTZ00307, ethanolamine phosphotransferase; Provisional.
Length = 417
Score = 31.0 bits (70), Expect = 0.13
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 37 VLALISFYFMPTHYAIACWCYVISGL-----LDAIDGHAARYFNQSTKFGAMLDQ----- 86
L L ++F Y Y L LDAIDG AR + G + D
Sbjct: 79 ALLLYFYFFEEGVYPSWVLYYAAFALFAYQTLDAIDGKQARRTGTGSPLGELFDHGCDAF 138
Query: 87 LTDRVGTMCLCVTLSTFYPKYQFLFQLSMAI 117
LT V T T ++ SM++
Sbjct: 139 LTPFVLLNVSLATYMTPVERFWLSTISSMSL 169
>gnl|CDD|166199 PLN02558, PLN02558, CDP-diacylglycerol-glycerol-3-phosphate/
3-phosphatidyltransferase.
Length = 203
Score = 30.8 bits (69), Expect = 0.13
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 57 YVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDRV 91
++ + + D +DG+ AR T FGA LD + D++
Sbjct: 45 FIAAAITDWLDGYLARKMKLGTAFGAFLDPVADKL 79
>gnl|CDD|166679 PLN03039, PLN03039, ethanolaminephosphotransferase; Provisional.
Length = 337
Score = 26.9 bits (59), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 55 WCYVISGLL-------DAIDGHAARYFNQSTKFGAMLDQLTDRVG 92
W + GLL DA+DG AR N S+ G + D D +
Sbjct: 27 WVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALA 71
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional.
Length = 336
Score = 25.8 bits (57), Expect = 8.5
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 3 THYAIACWC--YVISGLL-DAIDGHAARYFNQSYGRIVLALISFYFMPT 48
T IA + ++ GLL DAI A+ Y S G+ +LAL++F PT
Sbjct: 24 TRAVIATYLAIFLFIGLLVDAIRI-ASEYPAASLGKALLALLTFQIFPT 71
>gnl|CDD|227383 COG5050, EPT1, sn-1,2-diacylglycerol ethanolamine- and
cholinephosphotranferases [Lipid metabolism].
Length = 384
Score = 25.5 bits (56), Expect = 8.7
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 42 SFYFMPTHYAIACWCYVISGLLDAIDGHAARYFNQSTKFGAMLDQLTDR-VGTMCLCVTL 100
+ YA+ + Y DA+DG AR + G + D D T+ + +
Sbjct: 76 GPRWTYFSYALGLFLYQT---FDALDGRQARRTGTGSPLGELFDHGVDSINTTLSAIIFV 132
Query: 101 STFYPKYQFLFQLS 114
S F FL LS
Sbjct: 133 SAFGMGESFLLILS 146
>gnl|CDD|166000 PLN02359, PLN02359, ethanolaminephosphotransferase.
Length = 389
Score = 25.5 bits (56), Expect = 9.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 55 WCYVISGLL-------DAIDGHAARYFNQSTKFGAMLDQLTD 89
W + GLL DA+DG AR N S+ G + D D
Sbjct: 79 WVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCD 120
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.333 0.142 0.488
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,634,802
Number of extensions: 582452
Number of successful extensions: 901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 32
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.0 bits)