BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16742
(620 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|410910398|ref|XP_003968677.1| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Takifugu
rubripes]
Length = 333
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 135/272 (49%), Gaps = 51/272 (18%)
Query: 11 KQHKFELTKEQKSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS 70
KQHK +S LPIIH +KY C LP NHRFPM KF + ++L +D+VI ++
Sbjct: 17 KQHKDAWEVRHES-----CGLPIIHHSKYVCDLPTNHRFPMGKFPRVLHFLFKDQVITEN 71
Query: 71 KQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV 130
Q+ P+ S + VHT+EY++ F NG+ E+EQ+ TGF WS G+ +R R + T +
Sbjct: 72 -QVWVPEIASSDLLSCVHTEEYLNNFMNGRINEQEQRRTGFPWSEGIVTRCRYETGGTLL 130
Query: 131 IAVYLPFFLQRR-------------PVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAA 177
A LQR P F +L DL A Y++ L+R+ + D+
Sbjct: 131 AA---ELALQRGLACSTAGGTHHAFPGFGSGFCLLNDLAVAAKYVSASLKRKVLIVDLDV 187
Query: 178 VLADLIHFMVGINTQPVS-----------------------------GYQATLKEHLPGI 208
D F+ + + Y +T+++HLP +
Sbjct: 188 HQGDGTAFIFKEEPRVFTFSVHCGKNFPLRKQQSDLDVSVDDGLEDKDYLSTVEDHLPWL 247
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
L F+PDLV+YDAGVDPH+ DELGKL LTD G
Sbjct: 248 LDTFRPDLVLYDAGVDPHREDELGKLCLTDQG 279
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 103/220 (46%), Gaps = 58/220 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ +S + ++ + L + GDGTAFIF ++P VFTFS+HCG+N+P RKQ SDLDV++D G
Sbjct: 172 VSASLKRKVLIVDLDVHQGDGTAFIFKEEPRVFTFSVHCGKNFPLRKQQSDLDVSVDDGL 231
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
+D +LS + + +LL P++ + AG
Sbjct: 232 EDK----------DYLSTVEDHLP------WLLDTFRPDLVLYD---------AGVDPHR 266
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+ L L G+ ++ DL V Q TV+ VP
Sbjct: 267 EDELGKLCLTDQGLYQR----DLYVMQ----------TVVGKGVP--------------- 297
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
VATV GGGY DID+LA R +I+HRAAT V R L
Sbjct: 298 ----VATVIGGGYSRDIDKLAIRHSIVHRAATQVKHMRTL 333
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP G+GFCL+ND+A+AA+Y + + RKVLIVDLDVHQ
Sbjct: 147 GTHHAFPGFGSGFCLLNDLAVAAKY-VSASLKRKVLIVDLDVHQ 189
>gi|432891572|ref|XP_004075590.1| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Oryzias
latipes]
Length = 341
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 131/257 (50%), Gaps = 54/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPIIH +KY C LP NHRFPM KF + ++L++D+VI + KQ+ P+ S + VHT+
Sbjct: 38 LPIIHHSKYVCELPANHRFPMGKFPRVLHFLLKDQVITE-KQVWVPEIASRDLLSCVHTE 96
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRR-------- 142
+Y++KF +GKT+E+EQ+ TGF WS G+ SR R + T + A LQR
Sbjct: 97 DYLNKFLSGKTSEQEQRRTGFPWSEGIVSRCRYETGGTVLAA---EAALQRGLACSTAGG 153
Query: 143 -----PVFFDIAAVLADLICIAVYL-----------------------TFFLQRRPVFFD 174
P + +L DL A YL F + P F
Sbjct: 154 THHAFPGYGSGFCLLNDLAVAAKYLKEDCPTKRKILIVDLDVHQGDGTAFIFKEEPAVFT 213
Query: 175 IAAVL----------ADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGV 223
+ +DL I G+ + Y +T++ +LP +L F+PDLV+YDAGV
Sbjct: 214 FSVHCGKNFPLRKQESDLDISLEDGLEDEE---YLSTVEAYLPWLLQTFRPDLVLYDAGV 270
Query: 224 DPHQHDELGKLNLTDHG 240
DPH DELG+L+LTD G
Sbjct: 271 DPHWEDELGRLHLTDQG 287
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 60/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF ++PAVFTFS+HCG+N+P RKQ SDLD++++ G +D
Sbjct: 188 ILIVDLDVHQGDGTAFIFKEEPAVFTFSVHCGKNFPLRKQESDLDISLEDGLED------ 241
Query: 469 ALTWVTFLSQRSEKMRNNGIFL-FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
E + +L +LL+ P++ + AG + L
Sbjct: 242 -----------EEYLSTVEAYLPWLLQTFRPDLVLYD---------AGVDPHWEDELGRL 281
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
+L G+ R+ L V + T ++ G+P+AT
Sbjct: 282 HLTDQGLYRRDLFV---------------------------------MKTTVNQGVPIAT 308
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D+D+LA R +I+HRAAT V++E G+
Sbjct: 309 VIGGGYSRDMDRLALRHSIVHRAATQVWRECGM 341
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHG-IVRKVLIVDLDVHQ 547
THHAFP +G+GFCL+ND+A+AA+YL RK+LIVDLDVHQ
Sbjct: 153 GTHHAFPGYGSGFCLLNDLAVAAKYLKEDCPTKRKILIVDLDVHQ 197
>gi|99643283|emb|CAK22358.1| class 4 HDAC protein [Platynereis dumerilii]
Length = 322
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 123/251 (49%), Gaps = 43/251 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPIIH + Y LP HRF M KF FNYL++D +I + KQ+ EP ++S +A LVHT
Sbjct: 20 LPIIHHHDYVSELPKGHRFAMKKFHGVFNYLLKDNII-QMKQVAEPDEVSSQVAGLVHTP 78
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYL--------------- 135
EYV KFF GKT+EKEQ+ TGF+W+ GL R R + T V+ +L
Sbjct: 79 EYVEKFFTGKTSEKEQRRTGFKWNKGLLRRCRLEAGGT-VLGCHLAKERGLACSTGGGTH 137
Query: 136 ---PFFLQRRPVFFDIAAVLADLICIAVYLTFFL---------QRRPVFFDIAAVLADLI 183
P + + D+A + + V + +F D ++ +
Sbjct: 138 HAFPSYGSGYCLLNDLAIAAENSVATGVAERVLIVDLDVHQGDGTANIFEDSDSIFTFSM 197
Query: 184 HF-----MVGINTQPVSG---------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
H V N+ G Y L+ HLP IL F P L++YDAGVDPH D
Sbjct: 198 HCQSNFPFVKQNSDLDVGLADHIGDAEYMRELQTHLPVILETFHPGLILYDAGVDPHVKD 257
Query: 230 ELGKLNLTDHG 240
ELGKL+LTD G
Sbjct: 258 ELGKLDLTDQG 268
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL+ RDYYVLD I GIP+ TV GGGY D+D+L+ R TI+HRAAT ++ E L
Sbjct: 268 GLFDRDYYVLDEGIRRGIPLVTVIGGGYSHDLDELSIRHTIVHRAATKIWNEYNL 322
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP +G+G+CL+ND+A+AA + G+ +VLIVDLDVHQ
Sbjct: 135 GTHHAFPSYGSGYCLLNDLAIAAENSVATGVAERVLIVDLDVHQ 178
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
+ R LI++ L + GDGTA IF+ ++FTFSMHC N+PF KQ SDLDV +
Sbjct: 166 AERVLIVD--LDVHQGDGTANIFEDSDSIFTFSMHCQSNFPFVKQNSDLDVGL 216
>gi|348525428|ref|XP_003450224.1| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like
[Oreochromis niloticus]
Length = 345
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 127/257 (49%), Gaps = 54/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++H +KY C L P+HRFPM KF + L+RD+VI + KQ+ P+ S+ + VHT+
Sbjct: 42 LPVVHHSKYVCDLAPSHRFPMGKFPRVLQCLLRDQVITE-KQVWVPEIASKDLLSCVHTE 100
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRR-------- 142
+Y+ F NGK +E+EQ+ TGF WS G+ R R + T V+A + LQR
Sbjct: 101 DYLDNFINGKISEQEQRRTGFPWSEGIVRRCRYETGGT-VLAAEVA--LQRGLACSTAGG 157
Query: 143 -----PVFFDIAAVLADLICIAVYL-----------------------TFFLQRRPVFFD 174
P + +L DL A Y+ F + P F
Sbjct: 158 THHAFPSYGSGFCLLNDLAVAAKYMMDNSPTKRKVLIVDLDVHQGDGTAFIFKEEPSVFT 217
Query: 175 IAA----------VLADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGV 223
+ +DL I G+ + Y +T++ HLP +L F+PDLV+YDAGV
Sbjct: 218 FSVHCGKNFPLRKQQSDLDISVEDGLEDKD---YLSTVEAHLPWLLETFRPDLVLYDAGV 274
Query: 224 DPHQHDELGKLNLTDHG 240
DPH DELG+L LTD G
Sbjct: 275 DPHWEDELGRLRLTDQG 291
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 58/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTAFIF ++P+VFTFS+HCG+N+P RKQ SDLD++++ G +D
Sbjct: 192 VLIVDLDVHQGDGTAFIFKEEPSVFTFSVHCGKNFPLRKQQSDLDISVEDGLEDK----- 246
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+LS + +LL P++ + AG + L
Sbjct: 247 -----DYLSTVEAHLP------WLLETFRPDLVLYD---------AGVDPHWEDELGRLR 286
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ ++ L V V + R +P+ ++ + G Y RD
Sbjct: 287 LTDQGLYQRDLFVLKTVVK--RGVPIAAV------IGGGYSRD----------------- 321
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
ID+LA R +I+HRAAT V++E G+
Sbjct: 322 --------IDRLALRHSIVHRAATQVWRECGM 345
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHG-IVRKVLIVDLDVHQ 547
THHAFP +G+GFCL+ND+A+AA+Y++ + RKVLIVDLDVHQ
Sbjct: 157 GTHHAFPSYGSGFCLLNDLAVAAKYMMDNSPTKRKVLIVDLDVHQ 201
>gi|405971212|gb|EKC36062.1| hypothetical protein CGI_10022459 [Crassostrea gigas]
Length = 361
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 120/250 (48%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPIIH + Y C P HRF M KF +L D VI KQ++EP I +LVHT
Sbjct: 52 LPIIHHDGYVCEFPIRHRFAMRKFHGVLRFLKTDNVISM-KQVLEPSAIDPDFLKLVHTP 110
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQR 141
+YV +F +G T+ +EQ++TGF+WS G+ SR R + T H IA
Sbjct: 111 DYVERFLSGNTSVEEQRLTGFQWSTGIVSRCRLETGGTLLAGQLAMEHGIACSTGGGTHH 170
Query: 142 R-PVFFDIAAVLADLICIAVYLTFFLQRRPV----------------FFDIAAVLADLIH 184
P +L DL A L Q + V F D AV +H
Sbjct: 171 AFPSHGAGYCLLNDLAVTAAVLFKECQVKKVLIVDLDVHQGDGTACIFSDNCAVFTFSMH 230
Query: 185 F---------MVGINTQPVSG-----YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
M ++ V+G Y A L +LP +L F+PD+V+YDAGVDPH+ DE
Sbjct: 231 SEKNYPLKKQMSDMDVGLVTGITDKDYLAHLHSYLPWLLESFRPDIVLYDAGVDPHEKDE 290
Query: 231 LGKLNLTDHG 240
LGKLNLTD+G
Sbjct: 291 LGKLNLTDNG 300
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 94/210 (44%), Gaps = 61/210 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF + AVFTFSMH +NYP +KQ SD+ DVG
Sbjct: 201 VLIVDLDVHQGDGTACIFSDNCAVFTFSMHSEKNYPLKKQMSDM----DVGL-------- 248
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
VT ++ + + +LL P+I
Sbjct: 249 ----VTGITDKDYLAHLHSYLPWLLESFRPDI---------------------------- 276
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
++ D V H + L L+ GL+ RD+YV++ +S GIPVATV
Sbjct: 277 ----------VLYDAGVDPHEKD----ELGKLNLTDNGLFQRDFYVINLCVSRGIPVATV 322
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKER 618
GGGY DI+ LA R TI+HRAA KER
Sbjct: 323 IGGGYDKDINMLALRHTIVHRAAI---KER 349
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP HGAG+CL+ND+A+ A L + V+KVLIVDLDVHQ
Sbjct: 167 GTHHAFPSHGAGYCLLNDLAVTAAVLFKECQVKKVLIVDLDVHQ 210
>gi|291233233|ref|XP_002736558.1| PREDICTED: predicted protein-like, partial [Saccoglossus
kowalevskii]
Length = 315
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 115/249 (46%), Gaps = 40/249 (16%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
PI+H Y C LPP HRF M KF + + L+ VI + + L+ + + + E VHTK+
Sbjct: 20 PIVHHEGYVCYLPPGHRFQMRKFERLYQILLEQNVICERQVLMPVKASKDLLTEAVHTKD 79
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAV-----------------Y 134
Y+ FFNG T EK Q+ TGF WS GL SR R + T + A
Sbjct: 80 YIEDFFNGWTDEKAQRKTGFVWSEGLVSRCRYETGGTVLTAEAALQCGLACSTAGGTHHA 139
Query: 135 LPFFLQRRPVFFDIAAVLADLIC---IAVYLTFFLQRRP------VFFDIAAVLADLIH- 184
P + +F DIA LI ++ L L +F D AV +H
Sbjct: 140 FPAYGAGYCLFNDIAVAAKYLILRNKVSRVLVIDLDVHQGDGTAFIFKDDPAVFTFSVHC 199
Query: 185 ------------FMVGINTQPVSG-YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDEL 231
+ +N + Y ++ +LP I F+PDLVIYDAGVDPH+ D L
Sbjct: 200 GKNFPLFKQQSDLDISLNCGTGNADYMDVIQHNLPWIFQTFRPDLVIYDAGVDPHKEDLL 259
Query: 232 GKLNLTDHG 240
G+L LTD G
Sbjct: 260 GQLALTDEG 268
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 58/204 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GDGTAFIF DPAVFTFS+HCG+N+P KQ SDLD++++ GT
Sbjct: 169 VLVIDLDVHQGDGTAFIFKDDPAVFTFSVHCGKNFPLFKQQSDLDISLNCGT-------- 220
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
N ++ +++ + P I F T PD
Sbjct: 221 ----------------GNADYMDVIQHNLPWI--FQTFR--PD----------------- 243
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
++I D V H + L L+ GL+ RDY+V++ +I+ G P A +
Sbjct: 244 ---------LVIYDAGVDPHKEDL----LGQLALTDEGLFKRDYWVINYSITCGCPCACL 290
Query: 589 TGGGYCADIDQLAQRQTIIHRAAT 612
GGGY +D+LA R +I+HRAAT
Sbjct: 291 IGGGYDKSVDKLALRHSILHRAAT 314
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGF 516
TD+ R W L R + G L L+ THHAFP +GAG+
Sbjct: 89 TDEKAQRKTGFVWSEGLVSRC-RYETGGTVLTAEAALQCGLACSTAGGTHHAFPAYGAGY 147
Query: 517 CLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
CL ND+A+AA+YLI V +VL++DLDVHQ
Sbjct: 148 CLFNDIAVAAKYLILRNKVSRVLVIDLDVHQ 178
>gi|443693723|gb|ELT95017.1| hypothetical protein CAPTEDRAFT_228874 [Capitella teleta]
Length = 308
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 132/273 (48%), Gaps = 37/273 (13%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPIIH + Y TLP HRF M KF YL RD+VI KQ+ P ++S A LVH++
Sbjct: 6 LPIIHHHDYVSTLPRKHRFAMRKFHGVLEYLKRDQVI-TMKQVHSPDEVSHETAALVHSE 64
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRP------- 143
EY+HKFF+G T KEQ+ TGF W GLA R R + T L L R
Sbjct: 65 EYIHKFFHGLTDAKEQRRTGFVWDEGLARRCRLEAGGT-----LLSTQLARERGLACNTG 119
Query: 144 -----VFFDIAA---VLADLICIAVY-LTFFLQRRPVFFDIAAVLADLIHFMVGINTQPV 194
F D + ++ D+ A Y L + R + D+ D ++ N + +
Sbjct: 120 GGTHHAFRDYGSGFCLINDMAIAAKYALKAGIVERVLIVDLDVHQGDGTAKILE-NEECI 178
Query: 195 SGYQATLKEHLPGILAQFKPDL-VIYDAGVDPHQHDELGKLNLTDHGECISSSAR---IS 250
+ ++ P + K DL + + G+ H++ + L DH I S R +
Sbjct: 179 FTFSMHSAKNFP--FEKQKSDLDIALEDGLGDHEYLSI----LHDHLPSILQSFRPDMVI 232
Query: 251 SEAGVDPHQHDELGKLNLTDHGV----KYILND 279
+AGVDPH DELGKLNLTD G+ Y++N+
Sbjct: 233 YDAGVDPHVKDELGKLNLTDQGLFDRDYYVMNE 265
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLF--LLRLSDPEINRFS-THHAFPDHGAGF 516
TD R W L++R ++ G L L R N THHAF D+G+GF
Sbjct: 75 TDAKEQRRTGFVWDEGLARRC-RLEAGGTLLSTQLARERGLACNTGGGTHHAFRDYGSGF 133
Query: 517 CLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
CL+NDMA+AA+Y ++ GIV +VLIVDLDVHQ
Sbjct: 134 CLINDMAIAAKYALKAGIVERVLIVDLDVHQ 164
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 538 VLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADI 597
++I D V H + L L+ GL+ RDYYV++ I GIP ATV GGGY D+
Sbjct: 230 MVIYDAGVDPHVKD----ELGKLNLTDQGLFDRDYYVMNECIRRGIPCATVIGGGYSRDL 285
Query: 598 DQLAQRQTIIHRAATHVY 615
+ L+ R TI+HRAAT ++
Sbjct: 286 EALSLRHTIVHRAATKLW 303
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
R LI++ L + GDGTA I + + +FTFSMH +N+PF KQ SDLD+A++ G D
Sbjct: 154 RVLIVD--LDVHQGDGTAKILENEECIFTFSMHSAKNFPFEKQKSDLDIALEDGLGD 208
>gi|390334589|ref|XP_001198918.2| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like
[Strongylocentrotus purpuratus]
Length = 344
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LPI+H + YE LPP HRF M KF+K + L+ D VI K KQ+ P +++ VHT
Sbjct: 63 NLPIVHHDGYESYLPPGHRFQMRKFNKLRDVLLHDGVISK-KQMSSPVHVTKDELIRVHT 121
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRP------ 143
+EY+ KFF GKT+ KEQ+VTGF L R + H Y Q P
Sbjct: 122 EEYIEKFFEGKTSAKEQRVTGFTHIPYLPVRPSVFTLYVHQGKKYSVKKQQGTPGDGTAL 181
Query: 144 VFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKE 203
+F + +V + + + L+++ D++ + G + Y +++
Sbjct: 182 IFQEDPSVFT--LSVHCGKNYPLKKQQSDLDVS------VDRGTGDDD-----YMRIIQD 228
Query: 204 HLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
H+P +L F+P LV +DAGVDPH+ D LG L LTD G
Sbjct: 229 HIPSVLTNFRPGLVFFDAGVDPHKDDALGYLELTDQG 265
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 87/197 (44%), Gaps = 60/197 (30%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA IF +DP+VFT S+HCG+NYP +KQ SDLDV++D GT D
Sbjct: 176 GDGTALIFQEDPSVFTLSVHCGKNYPLKKQQSDLDVSVDRGTGDDD-------------- 221
Query: 479 RSEKMRNNGIFLFLLRLSDPEI-NRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRK 537
++ +++ P + F F D AG D AL L G+ R+
Sbjct: 222 ----------YMRIIQDHIPSVLTNFRPGLVFFD--AGVDPHKDDALGYLELTDQGLFRR 269
Query: 538 VLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADI 597
V +V Q R IP CV TV GGGY DI
Sbjct: 270 DYWVINEVIQ--RGIP---------CV----------------------TVIGGGYDKDI 296
Query: 598 DQLAQRQTIIHRAATHV 614
D+LA R +I+HRAA V
Sbjct: 297 DRLAARHSIVHRAAKKV 313
>gi|326674312|ref|XP_001920667.3| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like [Danio
rerio]
Length = 283
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 104/212 (49%), Gaps = 58/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF +P+VFTFS+HC RN+P RKQ SDLDV+++ GT+D
Sbjct: 130 ILIVDLDVHQGDGTAFIFKDEPSVFTFSVHCQRNFPLRKQQSDLDVSLEDGTEDR----- 184
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+LS+ E + +LL P++ + + G D L
Sbjct: 185 -----EYLSRVQEHL------PWLLESFRPDLVLYDS---------GVDPHWDDELGKLR 224
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R+ D YVL T + +GIPVATV
Sbjct: 225 LTDEGLYRR---------------------------------DLYVLHTVVKSGIPVATV 251
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GGGY DID+LA+R +IIHRAA V++E GL
Sbjct: 252 IGGGYSRDIDRLARRHSIIHRAALKVWREHGL 283
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + ++EHLP +L F+PDLV+YD+GVDPH DELGKL LTD G
Sbjct: 186 YLSRVQEHLPWLLESFRPDLVLYDSGVDPHWDDELGKLRLTDEG 229
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGI-VRKVLIVDLDVHQ 547
THHAFP HG+GFCL+ND+A+ A++LI RK+LIVDLDVHQ
Sbjct: 95 GTHHAFPSHGSGFCLLNDLAVTAKHLISEPTPKRKILIVDLDVHQ 139
>gi|428319276|ref|YP_007117158.1| Histone deacetylase [Oscillatoria nigro-viridis PCC 7112]
gi|428242956|gb|AFZ08742.1| Histone deacetylase [Oscillatoria nigro-viridis PCC 7112]
Length = 305
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 112/252 (44%), Gaps = 41/252 (16%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LPII+ Y LPPNHRFPM+KF + L+ D V DKS Q P+ + ELVH
Sbjct: 1 MKLPIIYHEDYVAPLPPNHRFPMAKFRMLYQMLLADGVADKS-QFHAPELPPQEWIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY-------------- 134
YV + NG K Q+ G WS LA+R T T + A
Sbjct: 60 DHCYVQAYCNGTLDNKAQRRIGLPWSRALANRTCTAVAGTVLTAKLALDCGLACNTAGGT 119
Query: 135 ---LPFFLQRRPVFFDIA---------AVLADLICIAVYLTFFLQRRPVFFDIAAVLADL 182
P F +F D+A ++ ++ + + + +F D ++V
Sbjct: 120 HHAFPAFGSGFCIFNDLAIASRVLQKSGLVRKVLIVDLDVHQGDGTAVIFQDDSSVFTFS 179
Query: 183 IHFMVGINTQPVSG--------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H V G Y TL + LP +L+ KPDLV+YDAGVDPHQ
Sbjct: 180 MHCEVNFPGTKQKGDLDVPLPVGMEDDEYLQTLDKFLPDLLSSVKPDLVLYDAGVDPHQG 239
Query: 229 DELGKLNLTDHG 240
D+LGKL LTD G
Sbjct: 240 DKLGKLALTDTG 251
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 85/210 (40%), Gaps = 60/210 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF D +VFTFSMHC N+P KQ DLDV + VG +D
Sbjct: 152 VLIVDLDVHQGDGTAVIFQDDSSVFTFSMHCEVNFPGTKQKGDLDVPLPVGMED------ 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFL-FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
E ++ FL LL P++ + AG L
Sbjct: 206 -----------DEYLQTLDKFLPDLLSSVKPDLVLYD---------AGVDPHQGDKLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G+ R+ + VL +C+ G G PVA
Sbjct: 246 ALTDTGLFRR------------------EMQVLMACLAG---------------GYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
V GGGY D L R +++HRAA+ Y++
Sbjct: 273 VIGGGYSDDAKGLVYRHSLLHRAASQAYRQ 302
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D+ R + L W L+ R+ + L L + THHAFP G+GFC+
Sbjct: 73 DNKAQRRIGLPWSRALANRTCTAVAGTVLTAKLALDCGLACNTAGGTHHAFPAFGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + G+VRKVLIVDLDVHQ
Sbjct: 133 FNDLAIASRVLQKSGLVRKVLIVDLDVHQ 161
>gi|254413119|ref|ZP_05026891.1| Histone deacetylase family, putative [Coleofasciculus
chthonoplastes PCC 7420]
gi|196180283|gb|EDX75275.1| Histone deacetylase family, putative [Coleofasciculus
chthonoplastes PCC 7420]
Length = 304
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 120/279 (43%), Gaps = 57/279 (20%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI++ Y LPP HRFPMSKF K L+ D ++ S+Q+ P +L+H
Sbjct: 1 MNLPIVYHPDYVTPLPPGHRFPMSKFGKLCELLLADTIV-TSEQIHTPNPPPREWIQLIH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAV------ 133
T +Y+ + NG K Q+ G WS GL +R T TH IA
Sbjct: 60 TPDYIQAYCNGTLDPKAQRRIGLPWSPGLVTRTCTAVGGTILTAQLALTHGIACNTAGGT 119
Query: 134 --YLPFFLQRRPVFFDIAA---VLADLICIAVYL------------TFFLQRRPVFFDIA 176
P + +F D+A VL + + L F Q P F +
Sbjct: 120 HHAFPSYGSGFCIFNDLAIATRVLQTMGLVQKILILDLDVHQGDGTAFIFQNDPTVFTFS 179
Query: 177 AVL----------ADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
+DL I VG++ Y TL HLP IL++ +PDLV+YDAGVD
Sbjct: 180 MHCQVNFPATKQKSDLDIPLPVGMDD---DAYLQTLAHHLPDILSEVQPDLVLYDAGVDT 236
Query: 226 HQHDELGKLNLTDHG----------ECISSSARISSEAG 254
H D GKL LTD G CI++ ++S G
Sbjct: 237 HACDRFGKLALTDTGIYRREMQVLSTCIAAGYPVASVIG 275
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 58/210 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHC N+P KQ SDLD+ + VG DD
Sbjct: 152 ILILDLDVHQGDGTAFIFQNDPTVFTFSMHCQVNFPATKQKSDLDIPLPVGMDDDA---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L + + + +L P++ ++ D +
Sbjct: 208 ------YLQTLAHHLPD------ILSEVQPDL-----------------VLYDAGVDTHA 238
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
R G K+ + D +++ + VLS+C I+AG PVA+V
Sbjct: 239 CDRFG---KLALTDTGIYRR-------EMQVLSTC---------------IAAGYPVASV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKER 618
GGGY D+ L R +++HRAA VY+ +
Sbjct: 274 IGGGYGDDMKALIYRHSLLHRAANDVYRHQ 303
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L R+ I L L+ + THHAFP +G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPGLVTRTCTAVGGTILTAQLALTHGIACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R L G+V+K+LI+DLDVHQ
Sbjct: 133 FNDLAIATRVLQTMGLVQKILILDLDVHQ 161
>gi|443476226|ref|ZP_21066143.1| Histone deacetylase [Pseudanabaena biceps PCC 7429]
gi|443018851|gb|ELS33037.1| Histone deacetylase [Pseudanabaena biceps PCC 7429]
Length = 305
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 102/228 (44%), Gaps = 75/228 (32%)
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
R + L W L+ R+ ++ G L F LR THHAFP +G+GFC+ N
Sbjct: 76 AQRRIGLPWSPELAYRT-RIAVGGTLLTARFALRQGLACNTAGGTHHAFPSYGSGFCIFN 134
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQ-------------------------------HT 549
D+A+A+R L++ G+V+K+LIVDLDVHQ
Sbjct: 135 DLAIASRVLLKEGLVKKILIVDLDVHQGDGTAFIFQNEPQVFTFSMHCQINFPSIKQISD 194
Query: 550 RSIPVPS-------LTVLSSCVPGL---------------------------------YM 569
R IP+P L +L++ +P L Y
Sbjct: 195 RDIPLPEGMEDDAYLRMLANHLPDLLTEIRPDLVLYDAGVDPHIGDRLGKLALTDAGLYR 254
Query: 570 RDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
RD VL T ++ G PVA+V GGGYC D+ L R +++HRAA+ VY++
Sbjct: 255 RDMQVLSTCVAQGFPVASVIGGGYCEDMRSLVYRHSLLHRAASDVYRQ 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 102/256 (39%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y + +RFPM KF + L+ D V + +Q P+ LVH +
Sbjct: 3 LPIIYHPNYVAPIANTNRFPMEKFRLLYEMLLTDGVA-QPEQFFRPELPDLEAIALVHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
EYV ++NG K Q+ G WS LA R R T + A +
Sbjct: 62 EYVDAYWNGNLEPKAQRRIGLPWSPELAYRTRIAVGGTLLTARFALRQGLACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIA----AVLADLICIAVYL-----------TFFLQRRPVFFDIAAV 178
P + +F D+A +L + + + + F Q P F +
Sbjct: 122 AFPSYGSGFCIFNDLAIASRVLLKEGLVKKILIVDLDVHQGDGTAFIFQNEPQVFTFS-- 179
Query: 179 LADLIHFMVGI-NTQPVSGYQATLKEHLPG-----ILAQFKPD--------LVIYDAGVD 224
+H + + + +S L E + +LA PD LV+YDAGVD
Sbjct: 180 ----MHCQINFPSIKQISDRDIPLPEGMEDDAYLRMLANHLPDLLTEIRPDLVLYDAGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
PH D LGKL LTD G
Sbjct: 236 PHIGDRLGKLALTDAG 251
>gi|334121393|ref|ZP_08495463.1| Histone deacetylase [Microcoleus vaginatus FGP-2]
gi|333455107|gb|EGK83768.1| Histone deacetylase [Microcoleus vaginatus FGP-2]
Length = 305
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 108/250 (43%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LPP+HRFPM+KF + L+ D V DKS Q P+ + ELVH
Sbjct: 3 LPIIYHEDYVAPLPPDHRFPMAKFRMLYQMLLADGVADKS-QFHAPELPPQEWIELVHDH 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQRR------- 142
YV + NG K + G WS L +R T T + A + L + L
Sbjct: 62 SYVQAYCNGTLDNKATRRIGLPWSRALVNRTCTAVAGTVLTAKLALDYGLACNTAGGTHH 121
Query: 143 --PVFFDIAAVLADL-ICIAVYLTFFLQRR---------------PVFFDIAAVLADLIH 184
P F + DL I V L R+ +F D ++V +H
Sbjct: 122 AFPAFGSGFCIFNDLAIASRVLQKNGLVRKVLIVDLDVHQGDGTAVIFQDDSSVFTFSMH 181
Query: 185 FMVGINTQPVSG--------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
V G Y TL + LP +L+ KPDLV+YDAGVDPH D+
Sbjct: 182 CEVNFPGTKQKGDLDVPLPVGMEDDEYLQTLDKFLPDLLSTVKPDLVLYDAGVDPHHGDK 241
Query: 231 LGKLNLTDHG 240
LGKL LTD G
Sbjct: 242 LGKLALTDTG 251
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 86/210 (40%), Gaps = 60/210 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF D +VFTFSMHC N+P KQ DLDV + VG +D
Sbjct: 152 VLIVDLDVHQGDGTAVIFQDDSSVFTFSMHCEVNFPGTKQKGDLDVPLPVGMED------ 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFL-FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
E ++ FL LL P++ + P HG L
Sbjct: 206 -----------DEYLQTLDKFLPDLLSTVKPDLVLYDA-GVDPHHGD--------KLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G+ R+ + VL +C+ G G PVA
Sbjct: 246 ALTDTGLFRR------------------EMQVLMACLAG---------------GYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
V GGGY D L R +++HRAA+ Y++
Sbjct: 273 VIGGGYSDDAQGLVYRHSLLHRAASQAYRQ 302
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D+ R + L W L R+ + L L + THHAFP G+GFC+
Sbjct: 73 DNKATRRIGLPWSRALVNRTCTAVAGTVLTAKLALDYGLACNTAGGTHHAFPAFGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L ++G+VRKVLIVDLDVHQ
Sbjct: 133 FNDLAIASRVLQKNGLVRKVLIVDLDVHQ 161
>gi|427706042|ref|YP_007048419.1| histone deacetylase [Nostoc sp. PCC 7107]
gi|427358547|gb|AFY41269.1| Histone deacetylase [Nostoc sp. PCC 7107]
Length = 305
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 111/252 (44%), Gaps = 41/252 (16%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+HLPII+ Y LP HRFPMSKFSK + L+ D V +++Q PQ + + ELVH
Sbjct: 1 MHLPIIYHPNYVAPLPEGHRFPMSKFSKLYELLLNDGVA-QAEQFHTPQVPPQDLIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY-------------- 134
T +YV + G K Q+ G WS L +R T + A
Sbjct: 60 TPDYVRAYCKGTLDAKAQRRIGLPWSPVLVNRTCVAVGGTILTAQMALSQGLACNTAGGT 119
Query: 135 ---LPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRP------VFFDIAAVLADL 182
P + +F D+A VL L + L L +F D A+V
Sbjct: 120 HHAFPSYGSGFCIFNDLAIASRVLQKLGLVQKILIVDLDVHQGDGTAFIFADDASVFTFS 179
Query: 183 IHFMVGINTQ----------PVS----GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H V PV Y TL ++LP +L+ +PDL+ YDAGVDPH
Sbjct: 180 MHCEVNFPGTKQHSDLDVPLPVGMDDDAYLQTLAKYLPDLLSHVQPDLIFYDAGVDPHIC 239
Query: 229 DELGKLNLTDHG 240
D LGKL LTD G
Sbjct: 240 DRLGKLALTDTG 251
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 93/213 (43%), Gaps = 60/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFADDASVFTFSMHCEVNFPGTKQHSDLDVPLPVGMDDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A LS + +F DP I L
Sbjct: 212 LAKYLPDLLSHVQPDL------IFYDAGVDPHICD--------------------RLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G+ R+ + VL++CV SAG PVA
Sbjct: 246 ALTDTGLFRR------------------EMQVLTTCV---------------SAGYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D+ L R +++HRAA+ VY++ GL
Sbjct: 273 VIGGGYADDMKSLVWRHSLLHRAASEVYRQYGL 305
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAG 515
GT DA R + L W L R+ I + LS + THHAFP +G+G
Sbjct: 70 GTLDAKAQRRIGLPWSPVLVNRTCVAVGGTILTAQMALSQGLACNTAGGTHHAFPSYGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+A+R L + G+V+K+LIVDLDVHQ
Sbjct: 130 FCIFNDLAIASRVLQKLGLVQKILIVDLDVHQ 161
>gi|300864305|ref|ZP_07109183.1| histone deacetylase superfamily protein [Oscillatoria sp. PCC 6506]
gi|300337694|emb|CBN54329.1| histone deacetylase superfamily protein [Oscillatoria sp. PCC 6506]
Length = 305
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 113/252 (44%), Gaps = 41/252 (16%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LPI++ N Y LPP HRFPM+KF L+ D V +S Q P ELVH
Sbjct: 1 MELPIVYHNDYVAPLPPGHRFPMAKFQLLSEMLLADGVAVRS-QFHLPTLPKREWIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV------ 133
+YV ++NG K Q+ G WS LA+R + +H IA
Sbjct: 60 EPDYVQAYYNGTLDAKAQRRIGLPWSPALANRTCIAVGGTILTAQLAISHGIACNTAGGT 119
Query: 134 --YLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRP------VFFDIAAVLADL 182
P + +F D+A +L + + L L +F D ++V
Sbjct: 120 HHAFPSYGSGFCIFNDLAIASRLLQKMGLVQKVLIVDLDVHQGDGTAVIFQDDSSVFTFS 179
Query: 183 IHFMV---GINTQ-------PVS----GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H V G Q PV Y TL ++LP +L+ PDLV+YDAGVDPH+
Sbjct: 180 MHCEVNFPGTKQQSDLDVSLPVGMEDDEYLQTLAKYLPDLLSDVNPDLVLYDAGVDPHKG 239
Query: 229 DELGKLNLTDHG 240
D+LGKL LTD G
Sbjct: 240 DKLGKLALTDTG 251
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF D +VFTFSMHC N+P KQ SDLDV++ VG +D
Sbjct: 152 VLIVDLDVHQGDGTAVIFQDDSSVFTFSMHCEVNFPGTKQQSDLDVSLPVGMEDD----- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L ++ + + LL +P++ + AG L
Sbjct: 207 -----EYLQTLAKYLPD------LLSDVNPDLVLYD---------AGVDPHKGDKLGKLA 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R+ + VLS+C+ G Y PVA
Sbjct: 247 LTDTGLFRR------------------DMQVLSTCLAGRY---------------PVACA 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGYC D++ L R +++HRAA+ ++++
Sbjct: 274 IGGGYCDDMNGLVYRHSLLHRAASLLWQQ 302
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAG 515
GT DA R + L W L+ R+ I L +S THHAFP +G+G
Sbjct: 70 GTLDAKAQRRIGLPWSPALANRTCIAVGGTILTAQLAISHGIACNTAGGTHHAFPSYGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+A+R L + G+V+KVLIVDLDVHQ
Sbjct: 130 FCIFNDLAIASRLLQKMGLVQKVLIVDLDVHQ 161
>gi|428304940|ref|YP_007141765.1| histone deacetylase [Crinalium epipsammum PCC 9333]
gi|428246475|gb|AFZ12255.1| Histone deacetylase [Crinalium epipsammum PCC 9333]
Length = 305
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 110/252 (43%), Gaps = 41/252 (16%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI++ Y LP HRFPM KF K + L++D V +K+ Q P + E ELVH
Sbjct: 1 MYLPIVYHPNYVVPLPEGHRFPMPKFKKLYELLIKDGVAEKT-QFYSPVRPPEDWIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR----VRTDPVPTHVIAVY---------- 134
T EYV + G K Q+ G WS LA+R V + + Y
Sbjct: 60 TPEYVQAYCQGTLDAKAQRRIGLPWSPALANRTCVAVGGTILTARLALTYGLACNTAGGT 119
Query: 135 ---LPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRP------VFFDIAAVLADL 182
P + +F D+A VL L + L L +F D +V
Sbjct: 120 HHAFPNYGSGFCIFNDLAVTARVLQQLGLVKKILIVDLDVHQGDGTAFIFQDDKSVFTFS 179
Query: 183 IHFMVGI-NTQPVSGYQATLKEHL-------------PGILAQFKPDLVIYDAGVDPHQH 228
+H V T+ S L + + P +L + KPDLV+YDAGVDPH
Sbjct: 180 MHCEVNFPGTKQTSDLDVPLAQGMEDDEYLQTLDKYLPDLLTEVKPDLVLYDAGVDPHLG 239
Query: 229 DELGKLNLTDHG 240
D LGKL+LTD G
Sbjct: 240 DRLGKLSLTDTG 251
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 58/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + G +D
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDKSVFTFSMHCEVNFPGTKQTSDLDVPLAQGMEDD----- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L + + + LL P++ + D G D L R
Sbjct: 207 -----EYLQTLDKYLPD------LLTEVKPDLVLY-------DAGV------DPHLGDR- 241
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ K+ + D +++ + VL++C+ Y PVA V
Sbjct: 242 ------LGKLSLTDTGIYRR-------EMQVLTTCISQRY---------------PVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GGGY D+D L R ++IHRAA+ + ++ L
Sbjct: 274 IGGGYADDLDALVYRHSLIHRAASDISRQYQL 305
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAG 515
GT DA R + L W L+ R+ I L L+ + THHAFP++G+G
Sbjct: 70 GTLDAKAQRRIGLPWSPALANRTCVAVGGTILTARLALTYGLACNTAGGTHHAFPNYGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+ AR L + G+V+K+LIVDLDVHQ
Sbjct: 130 FCIFNDLAVTARVLQQLGLVKKILIVDLDVHQ 161
>gi|434405446|ref|YP_007148331.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cylindrospermum stagnale PCC 7417]
gi|428259701|gb|AFZ25651.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cylindrospermum stagnale PCC 7417]
Length = 305
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 111/250 (44%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ + Y LPP HRFPMSKF + + L+ D V + +Q P++ ++ + ELVHT
Sbjct: 3 LPIIYHSDYIAPLPPGHRFPMSKFRQLYELLLADGVAHQ-EQFYAPERPTQDLIELVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV-------- 133
YV + G K Q+ G WS L +R + +H +A
Sbjct: 62 NYVQAYCEGTLEPKAQRRIGLPWSPALVNRTCVAVGGTILTAKLALSHGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRP------VFFDIAAVLADLIH 184
P + +F D+A VL L + L L +F D +V +H
Sbjct: 122 AFPGYGSGFCIFNDLAIASRVLQQLGIVQKILVVDLDVHQGDGTAFIFQDDKSVFTFSMH 181
Query: 185 FMVGI-NTQPVSGYQATLKE-------------HLPGILAQFKPDLVIYDAGVDPHQHDE 230
V T+ S L E +LP +L+ KPDLV+YDAGVDPH D
Sbjct: 182 CEVNFPGTKQNSDLDVPLTEGMEDDVYLQTLAQYLPDLLSDVKPDLVLYDAGVDPHIGDR 241
Query: 231 LGKLNLTDHG 240
LGKL LTD G
Sbjct: 242 LGKLALTDTG 251
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 90/212 (42%), Gaps = 64/212 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + G DD +T
Sbjct: 152 ILVVDLDVHQGDGTAFIFQDDKSVFTFSMHCEVNFPGTKQNSDLDVPLTEGMEDDVYLQT 211
Query: 468 VALTWVTFLSQRSEK--MRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LS + + G+ DP I L
Sbjct: 212 LAQYLPDLLSDVKPDLVLYDAGV--------DPHIGD--------------------RLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L GI R+ + VLS+CV SAG PV
Sbjct: 244 KLALTDTGIFRR------------------EMQVLSTCV---------------SAGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A V GGGY D+ L R +++HRAA+ VY++
Sbjct: 271 ACVIGGGYAEDMKSLVWRHSLLHRAASQVYQQ 302
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R + L W L R+ I L LS THHAFP +G+GFC+ ND+
Sbjct: 77 QRRIGLPWSPALVNRTCVAVGGTILTAKLALSHGLACNTAGGTHHAFPGYGSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A+R L + GIV+K+L+VDLDVHQ
Sbjct: 137 AIASRVLQQLGIVQKILVVDLDVHQ 161
>gi|218438511|ref|YP_002376840.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 7424]
gi|218171239|gb|ACK69972.1| histone deacetylase superfamily [Cyanothece sp. PCC 7424]
Length = 304
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 97/209 (46%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA+IF D +VFTFSMHC N+P KQ SDLDV + VG +D G
Sbjct: 152 VLIVDLDVHQGDGTAYIFQNDESVFTFSMHCEANFPGTKQKSDLDVPLPVGLEDEG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ LSQ LSD + +F+ D G
Sbjct: 208 ---YLKILSQ---------------YLSD-LLCQFNPDLVLYDAG--------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L L+ G+Y RD+YVL T ++AG PVA V
Sbjct: 234 --------------VDTHISDR------LGKLAMTNIGIYRRDFYVLSTCLAAGYPVAGV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ L R +++HRAA VY++
Sbjct: 274 IGGGYAKDLQNLVYRHSLLHRAARDVYRQ 302
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ Y LP HRFPM KF ++ L+ D I + P+ ++ I +LVHT
Sbjct: 3 LPIVYHRDYVTPLPDGHRFPMPKFKLLYDLLITDG-ITTPESTHTPEVPTQEIIQLVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
+YV + +G K Q+ G WS GL +R T T + A
Sbjct: 62 DYVGAYCSGTLDPKAQRRIGLPWSPGLVTRTCTALGGTILTAKLALKQGIACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQP 193
P + +F D+A L + L ++ + D+ D ++ N +
Sbjct: 122 AFPSYGSGFCIFNDLAIATRTLQHLG------LVKKVLIVDLDVHQGDGTAYIFQ-NDES 174
Query: 194 VSGYQATLKEHLPG----------------------ILAQF--------KPDLVIYDAGV 223
V + + + PG IL+Q+ PDLV+YDAGV
Sbjct: 175 VFTFSMHCEANFPGTKQKSDLDVPLPVGLEDEGYLKILSQYLSDLLCQFNPDLVLYDAGV 234
Query: 224 DPHQHDELGKLNLTDHG 240
D H D LGKL +T+ G
Sbjct: 235 DTHISDRLGKLAMTNIG 251
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCL 518
D R + L W L R+ I L L THHAFP +G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPGLVTRTCTALGGTILTAKLALKQGIACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R L G+V+KVLIVDLDVHQ
Sbjct: 133 FNDLAIATRTLQHLGLVKKVLIVDLDVHQ 161
>gi|254421490|ref|ZP_05035208.1| Histone deacetylase family, putative [Synechococcus sp. PCC 7335]
gi|196188979|gb|EDX83943.1| Histone deacetylase family, putative [Synechococcus sp. PCC 7335]
Length = 304
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 94/210 (44%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HRALI++ L + GDG+AFIF DP+VFTFSMHC N+P RKQ SDLDVA+D T DA
Sbjct: 151 HRALIID--LDVHQGDGSAFIFKDDPSVFTFSMHCKANFPGRKQQSDLDVALDEDTGDA- 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + RS LL +P++ + AG + D L
Sbjct: 208 --------VYLATLRSH-------LYPLLAQVNPDLVLYD---------AGVDVHKDDRL 243
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L GI Y RD VL T SAG P
Sbjct: 244 GKLALTDEGI---------------------------------YQRDRLVLQTCYSAGYP 270
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
+A V GGGY D+D L R +++HRAA V
Sbjct: 271 IACVIGGGYGEDMDALIYRHSLLHRAAKSV 300
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 106/260 (40%), Gaps = 55/260 (21%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV 87
+ P+++ Y LP HRFPM KF + LVRD++I ++ Q+ +P ELV
Sbjct: 1 MTSFPVVYHPAYVTPLPDGHRFPMPKFRLLRDLLVRDRIITEA-QIFQPGAPPVDWLELV 59
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAV----- 133
HT +YV + +G K Q+ G WS GL R T T H IA
Sbjct: 60 HTADYVQAYCSGSIETKAQRRIGLPWSPGLVQRTCTAVGGTILTAKLALKHGIACNTAGG 119
Query: 134 ---YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGIN 190
P + +F D+A I I V + L R + D+ D F+ +
Sbjct: 120 THHAFPDYGSGFCIFNDLA------IAIKVLQSQNLIHRALIIDLDVHQGDGSAFIFK-D 172
Query: 191 TQPVSGYQATLKEHLPG------------------------------ILAQFKPDLVIYD 220
V + K + PG +LAQ PDLV+YD
Sbjct: 173 DPSVFTFSMHCKANFPGRKQQSDLDVALDEDTGDAVYLATLRSHLYPLLAQVNPDLVLYD 232
Query: 221 AGVDPHQHDELGKLNLTDHG 240
AGVD H+ D LGKL LTD G
Sbjct: 233 AGVDVHKDDRLGKLALTDEG 252
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L QR+ I L L + THHAFPD+G+GFC+ ND+
Sbjct: 78 QRRIGLPWSPGLVQRTCTAVGGTILTAKLALKHGIACNTAGGTHHAFPDYGSGFCIFNDL 137
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A + L ++ + LI+DLDVHQ
Sbjct: 138 AIAIKVLQSQNLIHRALIIDLDVHQ 162
>gi|209523626|ref|ZP_03272180.1| histone deacetylase superfamily [Arthrospira maxima CS-328]
gi|423065918|ref|ZP_17054708.1| histone deacetylase superfamily [Arthrospira platensis C1]
gi|209496031|gb|EDZ96332.1| histone deacetylase superfamily [Arthrospira maxima CS-328]
gi|406712676|gb|EKD07860.1| histone deacetylase superfamily [Arthrospira platensis C1]
Length = 305
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 112/258 (43%), Gaps = 53/258 (20%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI+ Y LPP HRFPM KF + L+++ VI +S QL P+ ELVH
Sbjct: 1 MNLPIVFHPDYVAPLPPGHRFPMPKFGLLCDMLLQEGVIRRS-QLHLPKLPPTEWIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV------ 133
++YV + GK K Q+ G WS LA R + +H +A
Sbjct: 60 HRDYVEAYCQGKLDPKAQRRIGLPWSQALAQRTCIAVGGAILTAKLALSHGLACNTAGGT 119
Query: 134 --YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLADLI 183
P + +F DIA I V L ++ + D+ A + D
Sbjct: 120 HHAFPNYGSGFCIFNDIA------IAACVMQKLGLAKKILIVDLDVHQGDATAVIFQDNP 173
Query: 184 H-FMVGINTQ--------------PVS------GYQATLKEHLPGILAQFKPDLVIYDAG 222
H F ++ Q P++ Y L HLP +L +F+PDLVIYDAG
Sbjct: 174 HVFTFSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASHLPDLLTEFRPDLVIYDAG 233
Query: 223 VDPHQHDELGKLNLTDHG 240
VD H D LGKL LTD G
Sbjct: 234 VDTHIGDRLGKLALTDSG 251
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 73/230 (31%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+QR+ I L LS + THHAFP++G+GFC+
Sbjct: 73 DPKAQRRIGLPWSQALAQRTCIAVGGAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ------------------------------- 547
ND+A+AA + + G+ +K+LIVDLDVHQ
Sbjct: 133 FNDIAIAACVMQKLGLAKKILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQT 192
Query: 548 HTRSIPVP-------SLTVLSSCVPGL---YMRDYYVLDTAISAGIP------------- 584
R IP+ L +L+S +P L + D + D + I
Sbjct: 193 SDRDIPLAVGMEDEEYLQILASHLPDLLTEFRPDLVIYDAGVDTHIGDRLGKLALTDSGL 252
Query: 585 -------VATVTGGG----------YCADIDQLAQRQTIIHRAATHVYKE 617
++T G G YC D+ L R +++HRAAT VY++
Sbjct: 253 WRREMQVLSTCVGMGYPVAGIIGGGYCEDMQSLVYRHSLLHRAATDVYRQ 302
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + GD TA IF +P VFTFSMHC N+P +KQ SD D+ + VG +D
Sbjct: 152 ILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMED 205
>gi|383763016|ref|YP_005441998.1| acetoin utilization protein AcuC [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383284|dbj|BAM00101.1| acetoin utilization protein AcuC [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 303
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 110/251 (43%), Gaps = 43/251 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
PI+++ + LP HRFPM+KF K + +L+RD V Q PQ +E+ L H
Sbjct: 3 FPILYSPDHVAPLPEGHRFPMAKFGKVYEWLIRDGVA-SLDQFHLPQPATEAQLALAHNP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPF--------FLQRR 142
Y+ + G + ++ GF WS L R T + + V+A L
Sbjct: 62 AYIRAYLEGTLDARSRRRIGFPWSERLVRRTLT-ALGSTVLAAELALTHGLACSTAGGTH 120
Query: 143 PVFFDIAA---VLADLICIAVYLTF-FLQRRPVFFDI--------AAVLA---DLIHFMV 187
F D + + DL A ++ L RR + D+ A++L DL+ F +
Sbjct: 121 HAFHDFGSGYCIFNDLAVAARWVKAQGLARRVLIVDLDVHQGDGTASILQNDPDLVTFSM 180
Query: 188 GINTQ--------------PVS----GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
P Y A L + LP +L Q +PDLV+YDAGVDPH+ D
Sbjct: 181 HCEANFPFHKERSDYDVALPAGMEDEEYLAVLAQWLPDLLMQVRPDLVLYDAGVDPHRDD 240
Query: 230 ELGKLNLTDHG 240
LGKL L+D G
Sbjct: 241 ALGKLALSDQG 251
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ R LI++ L + GDGTA I DP + TFSMHC N+PF K+ SD DVA+ G +D
Sbjct: 149 ARRVLIVD--LDVHQGDGTASILQNDPDLVTFSMHCEANFPFHKERSDYDVALPAGMEDE 206
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
V W+ L L +R P++ + AG D A
Sbjct: 207 EYLAVLAQWLPDL-------------LMQVR---PDLVLYD---------AGVDPHRDDA 241
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
L L G+ R+ D +VL+ + G+
Sbjct: 242 LGKLALSDQGLFRR---------------------------------DRFVLEQCLRRGV 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
PVA V GGGY DID L +R TI+HRAA V+++
Sbjct: 269 PVAAVIGGGYSKDIDALGRRHTIVHRAAAEVWRQ 302
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAG 515
GT DA R + W L +R+ + + L L+ THHAF D G+G
Sbjct: 70 GTLDARSRRRIGFPWSERLVRRTLTALGSTVLAAELALTHGLACSTAGGTHHAFHDFGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+C+ ND+A+AAR++ G+ R+VLIVDLDVHQ
Sbjct: 130 YCIFNDLAVAARWVKAQGLARRVLIVDLDVHQ 161
>gi|443321291|ref|ZP_21050349.1| deacetylase, histone deacetylase/acetoin utilization protein
[Gloeocapsa sp. PCC 73106]
gi|442788980|gb|ELR98655.1| deacetylase, histone deacetylase/acetoin utilization protein
[Gloeocapsa sp. PCC 73106]
Length = 303
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 91/207 (43%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF +PAVFTFSMHC N+P KQ SDLD+ + +G DD G
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDNPAVFTFSMHCEANFPSHKQQSDLDIPLPIGLDDEG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+Q LL P++ + AG + + AL
Sbjct: 208 ---YLQILAQSLPD---------LLSEVKPDLVLYD---------AGVDIHVNDALGKLA 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R R+ VL T + G PVA V
Sbjct: 247 LTDRGIYR---------------------------------REMLVLSTCLDKGYPVAGV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGYC DI L QR +++HRAA VY
Sbjct: 274 IGGGYCQDIRALVQRHSLLHRAAREVY 300
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 111/255 (43%), Gaps = 47/255 (18%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LP+++ Y LP HRFPMSKF + + L+ ++ D++ P+ +LVH
Sbjct: 1 MNLPLVYHPDYVVPLPQGHRFPMSKFKQLYELLLAQEITDRNSTY-TPEMPKREWLQLVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---VRTDPVPTHVIAVYL---------- 135
T +YV + NG K + G S L R V T +A+ L
Sbjct: 60 TNDYVEAYCNGTLDAKSVRRIGLPCSEMLIKRTCIAVAGTVLTAQLALKLGICCNCAGGT 119
Query: 136 ----PFFLQRRPVFFDIA----AVLADLICIAVYL-----------TFFLQRRPVFFDIA 176
P F +F D+A +L + + + F Q P F +
Sbjct: 120 HHAFPSFGSGFCIFNDLAIASQVLLQQKLVKKILIVDLDVHQGDGTAFIFQDNPAVFTFS 179
Query: 177 ----------AVLADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
+DL I +G++ + GY L + LP +L++ KPDLV+YDAGVD
Sbjct: 180 MHCEANFPSHKQQSDLDIPLPIGLDDE---GYLQILAQSLPDLLSEVKPDLVLYDAGVDI 236
Query: 226 HQHDELGKLNLTDHG 240
H +D LGKL LTD G
Sbjct: 237 HVNDALGKLALTDRG 251
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP G+GFC+ ND+A+A++ L++ +V+K+LIVDLDVHQ
Sbjct: 118 GTHHAFPSFGSGFCIFNDLAIASQVLLQQKLVKKILIVDLDVHQ 161
>gi|307154340|ref|YP_003889724.1| histone deacetylase [Cyanothece sp. PCC 7822]
gi|306984568|gb|ADN16449.1| Histone deacetylase [Cyanothece sp. PCC 7822]
Length = 303
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 91/209 (43%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GDGTA+IF D +VFTFSMHC N+P KQ SDLDV + VG DD G
Sbjct: 151 VLIIDLDVHQGDGTAYIFQNDESVFTFSMHCEANFPGTKQKSDLDVPLAVGLDDEG---- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ LSQ + E+N PD
Sbjct: 207 ---YLKILSQYLPDLLG-------------EVN--------PD----------------- 225
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+++ D V H L L G+Y RD VL T ++AG PVA V
Sbjct: 226 ---------LVLYDAGVDTHIED----RLGKLCMSNIGIYRRDIQVLSTCVAAGYPVAAV 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D L R +++HRAA +Y +
Sbjct: 273 IGGGYAKDFQNLVYRHSLLHRAARDIYHQ 301
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+PI++ Y LP HRFPM KF ++ L+ D + I P+ + I ELVHT
Sbjct: 2 IPIVYHPNYVTPLPDGHRFPMPKFKLLYDLLITDGITTPEHTHI-PEVPAREIIELVHTP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
EYV ++ G K Q+ G WS GL +R T T + A
Sbjct: 61 EYVQAYYGGTLDPKAQRRIGLPWSPGLVTRTCTAVAGTILTAQLALKYGLACNTAGGTHH 120
Query: 135 -LPFFLQRRPVFFDIAAV---LADLICIAVYLT-------------FFLQRRPVF----- 172
P F +F D+A L L + L F VF
Sbjct: 121 AFPSFGSGFCIFNDLAIATRRLQQLELVKKVLIIDLDVHQGDGTAYIFQNDESVFTFSMH 180
Query: 173 ----FDIAAVLADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
F +DL + VG++ + GY L ++LP +L + PDLV+YDAGVD H
Sbjct: 181 CEANFPGTKQKSDLDVPLAVGLDDE---GYLKILSQYLPDLLGEVNPDLVLYDAGVDTHI 237
Query: 228 HDELGKLNLTDHG 240
D LGKL +++ G
Sbjct: 238 EDRLGKLCMSNIG 250
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAGFCL 518
D R + L W L R+ I L+ THHAFP G+GFC+
Sbjct: 72 DPKAQRRIGLPWSPGLVTRTCTAVAGTILTAQLALKYGLACNTAGGTHHAFPSFGSGFCI 131
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R L + +V+KVLI+DLDVHQ
Sbjct: 132 FNDLAIATRRLQQLELVKKVLIIDLDVHQ 160
>gi|443311907|ref|ZP_21041529.1| deacetylase, histone deacetylase/acetoin utilization protein
[Synechocystis sp. PCC 7509]
gi|442777982|gb|ELR88253.1| deacetylase, histone deacetylase/acetoin utilization protein
[Synechocystis sp. PCC 7509]
Length = 305
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 103/250 (41%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y LP HRFPM KF + + L+ V +Q P+ + ELVHT
Sbjct: 3 LPLIYHCDYVAALPEQHRFPMPKFRQLYELLIATGVA-HPQQFFLPEIPCQQWLELVHTS 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQRR------- 142
EYV + G K Q+ G WS L R T T + A + L + L
Sbjct: 62 EYVQAYLQGTLDAKAQRRIGLPWSPALVKRTCTAVGGTILTAQLALKYGLACNTAGGTHH 121
Query: 143 --PVFFDIAAVLADL-ICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGIN--------- 190
P + + DL I V L R+ + D+ D F+ +
Sbjct: 122 AFPSYGSGYCIFNDLAIASRVIQRLNLARKILIIDLDVHQGDGTAFIFQNDDSVFTFSMH 181
Query: 191 -------TQPVS-------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
T+ VS Y TL +LP +L Q KPDLV+YDAGVD H D
Sbjct: 182 CEVNFPGTKQVSDLDIPLPVGMEDEDYLQTLANYLPDVLNQVKPDLVLYDAGVDTHVGDR 241
Query: 231 LGKLNLTDHG 240
LGKL LTD G
Sbjct: 242 LGKLALTDTG 251
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 92/212 (43%), Gaps = 58/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + GDGTAFIF D +VFTFSMHC N+P KQ SDLD+ + VG +D
Sbjct: 152 ILIIDLDVHQGDGTAFIFQNDDSVFTFSMHCEVNFPGTKQVSDLDIPLPVGMED---EDY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T +L +++ + L L D ++ TH + D L
Sbjct: 209 LQTLANYLPDVLNQVKPD------LVLYDAGVD---TH------------VGDR-LGKLA 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ + VLS+C+ Y PVA V
Sbjct: 247 LTDTGIFRR------------------EMQVLSTCIAARY---------------PVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GGGY D+ L R +++HRAA+ Y++ L
Sbjct: 274 IGGGYAEDLKSLVYRHSLLHRAASQTYRQYSL 305
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAG 515
GT DA R + L W L +R+ I L+ THHAFP +G+G
Sbjct: 70 GTLDAKAQRRIGLPWSPALVKRTCTAVGGTILTAQLALKYGLACNTAGGTHHAFPSYGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+C+ ND+A+A+R + R + RK+LI+DLDVHQ
Sbjct: 130 YCIFNDLAIASRVIQRLNLARKILIIDLDVHQ 161
>gi|170078236|ref|YP_001734874.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp. PCC
7002]
gi|190358879|sp|P28606.2|Y1628_SYNP2 RecName: Full=Uncharacterized protein SYNPCC7002_A1628
gi|169885905|gb|ACA99618.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp. PCC
7002]
Length = 300
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 92/207 (44%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHC N+P +KQ SDLD+ + G DD G
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+ E LL P++ F D G
Sbjct: 208 ---YLQILAHHLED---------LLSQVKPDL-------VFYDAG--------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L L+ GLY R+ VL T ++AG PVA V
Sbjct: 234 --------------VDTHVGDR------LGKLAMTNTGLYRRERLVLSTCLAAGYPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY +I L R +++HRAA VY
Sbjct: 274 IGGGYAKNIHDLVYRHSLLHRAARDVY 300
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
P+++ Y +P HRFPM KF L+ D VI + +Q+ +PQ + ELVH
Sbjct: 3 FPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVI-QPEQVYQPQLPDRAWLELVHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV + G T K Q+ G WSAG+ R T
Sbjct: 62 DYVTAYCQGTLTPKAQRRIGLPWSAGVVQRTLT 94
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R + L W + QR+ I L L THHAFP +G+GFC++ND+
Sbjct: 77 QRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R + + G+ +++LIVDLDVHQ
Sbjct: 137 AIATRTIQQRGLAQRILIVDLDVHQ 161
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L HL +L+Q KPDLV YDAGVD H D LGKL +T+ G
Sbjct: 207 GYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTG 251
>gi|119486182|ref|ZP_01620242.1| histone deacetylase/AcuC/AphA family protein [Lyngbya sp. PCC 8106]
gi|119456673|gb|EAW37802.1| histone deacetylase/AcuC/AphA family protein [Lyngbya sp. PCC 8106]
Length = 305
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 91/209 (43%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GD TAFIF DP+VFTFSMHC N+P RKQ SDLDV + VG +D
Sbjct: 152 ILILDLDVHQGDATAFIFQDDPSVFTFSMHCEANFPARKQKSDLDVGLPVGMED---EAY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T +L +++ + +F + AG D L
Sbjct: 209 LYTLGKYLEDLLSEVKPDLVF----------------------YDAGVDTHVDDRLGKLA 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R+ + VLSSCV G PVA +
Sbjct: 247 LSDTGLWRR------------------EMQVLSSCV---------------RLGYPVAGI 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGYC D+ L R +I+HRAAT VY++
Sbjct: 274 IGGGYCDDMAALVYRHSILHRAATQVYRQ 302
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ + Y L P HRFPMSKF + L+ D+VI+ S Q+ P+ ELVH +
Sbjct: 3 LPIVYHSDYVAPLLPGHRFPMSKFRLLYQMLLADEVIEPS-QVHTPELPPSEWIELVHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV-------- 133
+YV + G K Q+ G WS LA+R + +H +A
Sbjct: 62 DYVQAYCQGTLDPKAQRRIGLPWSPALANRTCIAVGGAVLTAKLALSHGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQP 193
P +F DIA I L + + D+ D F+ +
Sbjct: 122 AFPNLGTGFCIFNDIA------IAARTIQNLGLAPKILILDLDVHQGDATAFIFQ-DDPS 174
Query: 194 VSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---IS 250
V + + + P + K DL D G+ DE L + E + S + +
Sbjct: 175 VFTFSMHCEANFPA--RKQKSDL---DVGLPVGMEDEAYLYTLGKYLEDLLSEVKPDLVF 229
Query: 251 SEAGVDPHQHDELGKLNLTDHGV 273
+AGVD H D LGKL L+D G+
Sbjct: 230 YDAGVDTHVDDRLGKLALSDTGL 252
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R+ + L LS + THHAFP+ G GFC+
Sbjct: 73 DPKAQRRIGLPWSPALANRTCIAVGGAVLTAKLALSHGLACNTAGGTHHAFPNLGTGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+AAR + G+ K+LI+DLDVHQ
Sbjct: 133 FNDIAIAARTIQNLGLAPKILILDLDVHQ 161
>gi|428301891|ref|YP_007140197.1| histone deacetylase [Calothrix sp. PCC 6303]
gi|428238435|gb|AFZ04225.1| Histone deacetylase [Calothrix sp. PCC 6303]
Length = 303
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 109/256 (42%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LP HRFPM+KFS ++ L+ D V KS+Q +P + + EL+HT
Sbjct: 3 LPIIYHPDYVTELPEGHRFPMAKFSLLYDLLLADGVA-KSEQFYQPTIPQQDLIELIHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAV----------------- 133
EYV+ + G EK Q+ G WS GL +R T T + A
Sbjct: 62 EYVNAYCQGTLDEKAQRRIGLPWSRGLVNRTCTAVGGTILTAQKALECGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ- 192
P + +F D+A I V L +R + D+ D F+ +
Sbjct: 122 AFPDYGSGFCIFNDLA------IACRVLQRQHLAKRILIVDLDVHQGDGTAFIFQDDDSV 175
Query: 193 -----------PVSGYQATLKEHLP---------GILAQFKPDL--------VIYDAGVD 224
P + ++ L LP LA + PDL V+YDAGVD
Sbjct: 176 FTFSMHCEVNFPGTKQKSDLDVPLPVGMEDDAYLQTLASYLPDLLSQVKPDIVLYDAGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
PH D+LGKL LTD G
Sbjct: 236 PHIGDKLGKLALTDSG 251
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 92/212 (43%), Gaps = 64/212 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEVNFPGTKQKSDLDVPLPVGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEK--MRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LSQ + + G+ DP I L
Sbjct: 212 LASYLPDLLSQVKPDIVLYDAGV--------DPHIGD--------------------KLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L GI R+ + VLS+CV S G PV
Sbjct: 244 KLALTDSGIFRR------------------EMQVLSTCV---------------SQGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A V GGGY D+ L R +++HRAA+ VY++
Sbjct: 271 ACVIGGGYADDMKSLVYRHSLLHRAASEVYQQ 302
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLF--LLRLSDPEINRFSTHHAFPDHGAGFCL 518
D+ R + L W L R+ I L THHAFPD+G+GFC+
Sbjct: 73 DEKAQRRIGLPWSRGLVNRTCTAVGGTILTAQKALECGLACNTAGGTHHAFPDYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R L R + +++LIVDLDVHQ
Sbjct: 133 FNDLAIACRVLQRQHLAKRILIVDLDVHQ 161
>gi|381205004|ref|ZP_09912075.1| histone deacetylase/AcuC/AphA family protein [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 319
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 90/213 (42%), Gaps = 64/213 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFI + AVFTFSMHC N+PFRKQ SDLDV + DD
Sbjct: 155 ILIVDLDVHQGDGTAFIHQDEVAVFTFSMHCQSNFPFRKQHSDLDVPLPENLDDDS---- 210
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPD---HGAGFCLMNDMALA 525
+L +LR + PE+ PD + AG D L
Sbjct: 211 --------------------YLRILRANLPEL----LDRTEPDLVIYNAGVDPFKDDPLG 246
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G L RD YV++ ++ G PV
Sbjct: 247 KLNLTWEG---------------------------------LQARDQYVMECCLNVGAPV 273
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
V GGGY D ++LA R +++HR+A +Y+ER
Sbjct: 274 GCVIGGGYSKDHEELAWRHSLVHRSAAKIYQER 306
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D + R + L W L++R+ I L L THHAFPD G+GFC+
Sbjct: 76 DKSAARRIGLPWTEGLARRTITAIGGTILTLQLALKHGLACNLGGGTHHAFPDFGSGFCI 135
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND ++AAR L++ G V+++LIVDLDVHQ
Sbjct: 136 FNDASVAARMLLQEGSVQQILIVDLDVHQ 164
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ +LP +L + +PDLVIY+AGVDP + D LGKLNLT G
Sbjct: 211 YLRILRANLPELLDRTEPDLVIYNAGVDPFKDDPLGKLNLTWEG 254
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+I+ Y+ HRFPMSKF + + + +K + + +P+ S + VHT
Sbjct: 5 LPLIYHPDYDIPEWNEEHRFPMSKFRRLYKIISEEKSL-SPVEFHQPEVASTDHLQAVHT 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+Y+ +F + + + G W+ GLA R T
Sbjct: 64 LDYIQQFMENRLDKSAARRIGLPWTEGLARRTIT 97
>gi|428770468|ref|YP_007162258.1| histone deacetylase [Cyanobacterium aponinum PCC 10605]
gi|428684747|gb|AFZ54214.1| Histone deacetylase [Cyanobacterium aponinum PCC 10605]
Length = 300
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 90/205 (43%), Gaps = 58/205 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + GDGTAFIF D VFTFSMHC N+P+RKQ SDLD+ + +G DD G +
Sbjct: 152 ILIIDLDVHQGDGTAFIFRDDERVFTFSMHCEANFPYRKQKSDLDIPLPIGLDDDGYLQI 211
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+T LL+ P+I + AG + L
Sbjct: 212 LAFHLT----------------DLLKQVKPDIVIYD---------AGVDVSGCDRLGKLS 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ + VLS+C ++ G PVA V
Sbjct: 247 LTDTGIYRR------------------EMMVLSTC---------------LAEGYPVAGV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATH 613
GGGYC D+D+L R ++IHRAA
Sbjct: 274 IGGGYCKDLDELVYRHSLIHRAAAE 298
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
DD R + L W L +R+ I L L + THHAFPD+G+GFC+
Sbjct: 73 DDKSKRRIGLPWSEGLVKRTCTAVGGTILTVQLALEHGICCNLAGGTHHAFPDYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+RYL+ IV K+LI+DLDVHQ
Sbjct: 133 FNDIAIASRYLLIEKIVNKILIIDLDVHQ 161
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 31/264 (11%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LP+++ + Y LP HRFPM KF + L++D++I + +P ++ + +LVH
Sbjct: 1 MNLPVVYHSDYVTPLPEQHRFPMPKFKLLYELLLKDQIITQESTY-KPTIANDKLLQLVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYL------------- 135
+ YV +F +G +K ++ G WS GL R T V ++ V L
Sbjct: 60 NETYVSQFCDGTLDDKSKRRIGLPWSEGLVKRTCT-AVGGTILTVQLALEHGICCNLAGG 118
Query: 136 -----PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGIN 190
P + +F DIA I L + + + D+ D F+ +
Sbjct: 119 THHAFPDYGSGFCIFNDIA------IASRYLLIEKIVNKILIIDLDVHQGDGTAFIFR-D 171
Query: 191 TQPVSGYQATLKEHLPGILAQFKPDLVI-YDAGVDPHQHDELGKLNLTDHGECISSSARI 249
+ V + + + P + K DL I G+D + ++ +LTD + + I
Sbjct: 172 DERVFTFSMHCEANFP--YRKQKSDLDIPLPIGLDDDGYLQILAFHLTDLLKQVKPDIVI 229
Query: 250 SSEAGVDPHQHDELGKLNLTDHGV 273
+AGVD D LGKL+LTD G+
Sbjct: 230 -YDAGVDVSGCDRLGKLSLTDTGI 252
>gi|428309234|ref|YP_007120211.1| deacetylase [Microcoleus sp. PCC 7113]
gi|428250846|gb|AFZ16805.1| deacetylase, histone deacetylase/acetoin utilization protein
[Microcoleus sp. PCC 7113]
Length = 305
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 93/210 (44%), Gaps = 60/210 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF DP VFTFSMHC N+P KQ SDLDV + G DDA +T
Sbjct: 152 ILILDLDVHQGDGTAFIFQDDPTVFTFSMHCEINFPSTKQTSDLDVPLPEGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A LS+ P+I + AG L
Sbjct: 212 LARYLPDLLSEFQ-----------------PDIVLYD---------AGVDPHTGDRLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G+ R+ + VLS+CV +AG PVA+
Sbjct: 246 ALTDTGLYRR------------------EMQVLSTCV---------------AAGYPVAS 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
V GGGY D D L R +++HRAA+HVY++
Sbjct: 273 VIGGGYADDFDALIYRHSLVHRAASHVYRQ 302
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 98/256 (38%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LP HRFPM KF K + L+ I Q P+ ELVHT
Sbjct: 3 LPIIYHPDYVAPLPEGHRFPMPKFGKLYERLLNSH-IATLDQFHTPEIPPTEWIELVHTS 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
+YV + G K Q+ G WS+ L R T T + A
Sbjct: 62 DYVQAYLKGTLDTKAQRRIGLPWSSALVKRTCTAVGGTLLTAQLALKYGLACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIAAV--------LADLICI-------AVYLTFFLQRRPVFFDIAAV 178
P + +F D+A LA I I F Q P F +
Sbjct: 122 AFPSYGSGFCIFNDLAIAARVLQQQGLAQKILILDLDVHQGDGTAFIFQDDPTVFTFS-- 179
Query: 179 LADLIHFMVGI-NTQPVSGYQATLKEHLPG-----ILAQFKPDL--------VIYDAGVD 224
+H + +T+ S L E + LA++ PDL V+YDAGVD
Sbjct: 180 ----MHCEINFPSTKQTSDLDVPLPEGMEDDAYLQTLARYLPDLLSEFQPDIVLYDAGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
PH D LGKL LTD G
Sbjct: 236 PHTGDRLGKLALTDTG 251
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAGFCL 518
D R + L W + L +R+ + L+ THHAFP +G+GFC+
Sbjct: 73 DTKAQRRIGLPWSSALVKRTCTAVGGTLLTAQLALKYGLACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+AAR L + G+ +K+LI+DLDVHQ
Sbjct: 133 FNDLAIAARVLQQQGLAQKILILDLDVHQ 161
>gi|422648104|ref|ZP_16711229.1| histone deacetylase family protein [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330961643|gb|EGH61903.1| histone deacetylase family protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 305
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 111/268 (41%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF +YLV D + + QLI P+ I L H
Sbjct: 3 LPLIYHDDYSPAFPADHRFPMDKFRLLRDYLV-DSGLTRDVQLIRPELCPTDILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYIGRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEKALTHGMACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLQSGRVHKILIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 IHFMVGINTQPVS--------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + GY + + L +L +KPDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGDVGYLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 240 DALGYLQLTDQGVANRDEAVLRHCLGRD 267
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 80/216 (37%), Gaps = 60/216 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDGTA I T S+HC +N+P RK SD D+ + +G D G
Sbjct: 150 HKILIFDCDV--HQGDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDVG 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + + +LL P++ + AG + D AL
Sbjct: 208 YLNVV----------------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 243 GYLQLTDQGVAN---------------------------------RDEAVLRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V V GGGY D LA+R I+H +A V+ + GL
Sbjct: 270 VMGVIGGGYSKDRQALARRHGILHHSAQKVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEKALTHGMACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V K+LI D DVHQ
Sbjct: 137 AVISHYLLQSGRVHKILIFDCDVHQ 161
>gi|37521188|ref|NP_924565.1| histone deacetylase family protein [Gloeobacter violaceus PCC 7421]
gi|35212184|dbj|BAC89560.1| histone deacetylase family protein [Gloeobacter violaceus PCC 7421]
Length = 303
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 81/185 (43%), Gaps = 71/185 (38%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ---------------- 547
THHAFPD G+GFC+ ND+A++AR L+ G VR+VLIVDLDVHQ
Sbjct: 118 GTHHAFPDFGSGFCIFNDLAVSARVLLAEGQVRRVLIVDLDVHQGDGTAWIFADEPGVFT 177
Query: 548 ------------HTRS---IPVP-------SLTVLSSCVPGL------------------ 567
RS +P+P L VL+ +PGL
Sbjct: 178 FSMHCEQNFPGRKQRSDLDVPLPIGLDDDTYLRVLNEHLPGLIETVRPDLVLYDAGVDPH 237
Query: 568 ---------------YMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
+ RD VL + GIPVA V GGGY ++D L R ++HRAA
Sbjct: 238 RSDKLGKLALTDRGLFERDRAVLGLCLKRGIPVAAVIGGGYDNNLDALVARHALLHRAAA 297
Query: 613 HVYKE 617
VY+
Sbjct: 298 EVYRR 302
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 108/259 (41%), Gaps = 55/259 (21%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LP +++ +YE LPP HRFPM KFS+ +YL+ ++ + + +Q EP++ LVH
Sbjct: 1 MELPFVYSPRYEANLPPAHRFPMGKFSRLHHYLL-NQGVARPEQFWEPERAGWEWLTLVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAV------ 133
YV F G + +E + G WS L R T T H +A
Sbjct: 60 APRYVADFCAGILSAQEFRRIGLPWSPALVERTCTAVGGTILTARLALRHGLACNTCGGT 119
Query: 134 --YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT 191
P F +F D+A + V L RR + D+ D ++ +
Sbjct: 120 HHAFPDFGSGFCIFNDLA------VSARVLLAEGQVRRVLIVDLDVHQGDGTAWIFA-DE 172
Query: 192 QPVSGYQATLKEHLPG----------------------ILAQFKPDL--------VIYDA 221
V + +++ PG +L + P L V+YDA
Sbjct: 173 PGVFTFSMHCEQNFPGRKQRSDLDVPLPIGLDDDTYLRVLNEHLPGLIETVRPDLVLYDA 232
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVDPH+ D+LGKL LTD G
Sbjct: 233 GVDPHRSDKLGKLALTDRG 251
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + GDGTA+IF +P VFTFSMHC +N+P RKQ SDLDV + +G DD
Sbjct: 152 VLIVDLDVHQGDGTAWIFADEPGVFTFSMHCEQNFPGRKQRSDLDVPLPIGLDD 205
>gi|390363404|ref|XP_784008.3| PREDICTED: uncharacterized protein SYNPCC7002_A1628-like
[Strongylocentrotus purpuratus]
Length = 262
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 97/213 (45%), Gaps = 60/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GD TA IF +DP+VFT S+HCG+NYP +KQ SDLDV++D GT D
Sbjct: 109 VLIIDLDVHQGDATALIFQEDPSVFTLSVHCGKNYPLKKQQSDLDVSVDRGTGD------ 162
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFSTHHAFPDHGAGFCLMNDMALAAR 527
+ MR +++ P + F F D AG D AL
Sbjct: 163 -----------DDYMR-------IIQDHIPSVLTNFRPGLVFFD--AGVDPHKDDALGYL 202
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G+ R+ V +V Q R IP CV T
Sbjct: 203 ELTDQGLFRRDYWVMNEVIQ--RGIP---------CV----------------------T 229
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY DID+LA R +I+HRAA V++ER L
Sbjct: 230 VIGGGYDKDIDRLAARHSIVHRAAKKVWQERRL 262
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 90/198 (45%), Gaps = 48/198 (24%)
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPV-- 144
VHT+EY+ KFF GKT+ KEQ+VTGF WS GL SR R + T ++A L L R V
Sbjct: 15 VHTEEYIEKFFEGKTSAKEQRVTGFTWSEGLVSRCRYETGGT-ILAAELA--LGRGLVCN 71
Query: 145 --------FFDIAAVLADLICIAVYLTFFLQR----RPVFFDIAAVLADLIHFM------ 186
F + A L +AV + + R R + D+ D +
Sbjct: 72 TGGGTHHAFPEHGAGFCLLNDMAVAASLMVHRGKVDRVLIIDLDVHQGDATALIFQEDPS 131
Query: 187 -------VGINTQPVSGYQATL-----------------KEHLPGILAQFKPDLVIYDAG 222
G N P+ Q+ L ++H+P +L F+P LV +DAG
Sbjct: 132 VFTLSVHCGKN-YPLKKQQSDLDVSVDRGTGDDDYMRIIQDHIPSVLTNFRPGLVFFDAG 190
Query: 223 VDPHQHDELGKLNLTDHG 240
VDPH+ D LG L LTD G
Sbjct: 191 VDPHKDDALGYLELTDQG 208
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R TW L R I L L + THHAFP+HGAGFCL+NDM
Sbjct: 34 QRVTGFTWSEGLVSRCRYETGGTILAAELALGRGLVCNTGGGTHHAFPEHGAGFCLLNDM 93
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+AA ++ G V +VLI+DLDVHQ
Sbjct: 94 AVAASLMVHRGKVDRVLIIDLDVHQ 118
>gi|427718250|ref|YP_007066244.1| histone deacetylase [Calothrix sp. PCC 7507]
gi|427350686|gb|AFY33410.1| Histone deacetylase [Calothrix sp. PCC 7507]
Length = 310
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 94/213 (44%), Gaps = 60/213 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI++ L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG +D
Sbjct: 156 HKILIVD--LDVHQGDGTAFIFQDDESVFTFSMHCEVNFPGTKQKSDLDVPLTVGMED-- 211
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
T T +L +++ + +F DP I L
Sbjct: 212 -DTYLQTLANYLPDLLSEIKPD--LIFYDAGVDPHIGD--------------------RL 248
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L GI R+ + VLS+CV SAG P
Sbjct: 249 GKLALTDTGIYRR------------------EMQVLSTCV---------------SAGYP 275
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
VA V GGGY D+ L R +++HRAA+ VY++
Sbjct: 276 VACVIGGGYADDLKSLVWRHSLLHRAASQVYRQ 308
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 26 DRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
++ + LPI++ Y LPP HRFPMSKF + + L+ D V + Q P++ + E
Sbjct: 4 NKYMDLPIVYHPDYIAPLPPGHRFPMSKFRQLYELLLGDGVA-QIAQFHTPERPPTDLIE 62
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
LVHT +YV + G K Q+ G WS LA+R
Sbjct: 63 LVHTPDYVQAYCEGTLDAKAQRRIGLPWSPALANR 97
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAG 515
GT DA R + L W L+ R+ I L LS + THHAFP +G+G
Sbjct: 76 GTLDAKAQRRIGLPWSPALANRTCVAVGGTILTAKLALSQGLACNTAGGTHHAFPSYGSG 135
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+A R L + G+V K+LIVDLDVHQ
Sbjct: 136 FCIFNDLAIACRVLQKIGLVHKILIVDLDVHQ 167
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +LP +L++ KPDL+ YDAGVDPH D LGKL LTD G
Sbjct: 214 YLQTLANYLPDLLSEIKPDLIFYDAGVDPHIGDRLGKLALTDTG 257
>gi|126660711|ref|ZP_01731810.1| histone deacetylase/AcuC/AphA family protein [Cyanothece sp.
CCY0110]
gi|126618009|gb|EAZ88779.1| histone deacetylase/AcuC/AphA family protein [Cyanothece sp.
CCY0110]
Length = 305
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 92/212 (43%), Gaps = 58/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GDGTA IF D VFTFSMHC N+P KQ SDLDV++ G DD G
Sbjct: 152 VLIIDLDVHQGDGTAKIFQNDLTVFTFSMHCEANFPREKQKSDLDVSLPQGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ LSQ LL P++ + AG
Sbjct: 208 ---YLQILSQHLSD---------LLSQIKPDLILYD---------AG------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VD+ + H + + G+Y R+ VL + I+ G PVA+V
Sbjct: 234 ------------VDIHANDHFGKLSITD--------TGIYRRERLVLSSCIAEGYPVASV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GGGY D+ L R +++HRAA VY+ L
Sbjct: 274 IGGGYAKDLKSLVYRHSLLHRAAKDVYQSHQL 305
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 119/276 (43%), Gaps = 51/276 (18%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI++ ++Y LP HRFPM KFS + L+R+KV+ KS + P+ +S+ ELVH
Sbjct: 1 MNLPIVYHDQYVVPLPDGHRFPMEKFSLLYELLLREKVV-KSNNIYTPECPEKSLLELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQRRP---- 143
+Y+ + G ++K Q+ G WS L R T + A + L F L
Sbjct: 60 CPDYITAYCQGTLSDKVQRRIGLPWSEALVKRTCVAVGGTILTAKLALKFGLACNTAGGT 119
Query: 144 ------------VFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVG 188
+F D+A VL L + L L DL F
Sbjct: 120 HHAFPDYGSGFCIFNDLAIATRVLQKLKLVKTVLIIDLDVHQGDGTAKIFQNDLTVFTFS 179
Query: 189 INTQ---PVSGYQATLKEHLP---------GILAQ--------FKPDLVIYDAGVDPHQH 228
++ + P ++ L LP IL+Q KPDL++YDAGVD H +
Sbjct: 180 MHCEANFPREKQKSDLDVSLPQGLDDDGYLQILSQHLSDLLSQIKPDLILYDAGVDIHAN 239
Query: 229 DELGKLNLTDHG----------ECISSSARISSEAG 254
D GKL++TD G CI+ ++S G
Sbjct: 240 DHFGKLSITDTGIYRRERLVLSSCIAEGYPVASVIG 275
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 449 CSDLDVAIDVGT-DDAGNRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFST 505
C D A GT D R + L W L +R+ I L+ T
Sbjct: 60 CPDYITAYCQGTLSDKVQRRIGLPWSEALVKRTCVAVGGTILTAKLALKFGLACNTAGGT 119
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAFPD+G+GFC+ ND+A+A R L + +V+ VLI+DLDVHQ
Sbjct: 120 HHAFPDYGSGFCIFNDLAIATRVLQKLKLVKTVLIIDLDVHQ 161
>gi|237801473|ref|ZP_04589934.1| histone deacetylase family protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024332|gb|EGI04389.1| histone deacetylase family protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 307
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y PP HRFPM KF +YLV D + QLI P I L H
Sbjct: 3 LPLIYHDDYSPAFPPEHRFPMDKFRLLRDYLV-DSGLTSDVQLIRPDICPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + D H +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTVRAVGGSLLTADMALKHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADLIHFM-VG 188
+D A +AV + LQ + + FD A +LAD + V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 189 INTQ---PVSGYQATLKEHLPG-----------------ILAQFKPDLVIYDAGVDPHQH 228
++ + P Q+ LP +L +KPDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGDAEYLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDQG 251
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 73/202 (36%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAEYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG + D AL L G+ R
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGVAR-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD V+ + IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVMRHCLGRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ GL
Sbjct: 284 ALARRHGILHHSAQKVWNAMGL 305
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTADMALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|186686128|ref|YP_001869324.1| histone deacetylase superfamily protein [Nostoc punctiforme PCC
73102]
gi|186468580|gb|ACC84381.1| histone deacetylase superfamily [Nostoc punctiforme PCC 73102]
Length = 305
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 96/213 (45%), Gaps = 60/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEVNFPGTKQNSDLDVPLPVGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A +LS K++ + +F DP I L
Sbjct: 212 LA----NYLSDLLSKVKPD--LVFYDAGVDPHIGD--------------------RLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L GI R+ + VLS+C +S+G PVA
Sbjct: 246 ALTDAGIFRR------------------EMQVLSTC---------------MSSGYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D+ L R +++HRAA+ VY++ L
Sbjct: 273 VIGGGYADDMKSLVWRHSLLHRAASEVYQQYKL 305
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 103/257 (40%), Gaps = 55/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LP HRFPMSKF + + L+ D V ++ +Q P++ + ELVHT
Sbjct: 3 LPIIYHPDYIAPLPEGHRFPMSKFRQLYELLLADGVANQ-EQFHTPERPPPELIELVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV-------- 133
YV + G K Q+ G WS LA+R + +H +A
Sbjct: 62 SYVQAYCEGTLDPKLQRRIGLPWSPALANRTCVAVGGTILTAKLALSHGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQP 193
P + +F D+A I V F L ++ + D+ D F+ +
Sbjct: 122 AFPSYGSGFCIFNDLA------IACRVLQKFGLVQKILIVDLDVHQGDGTAFIFQ-DDDS 174
Query: 194 VSGYQATLKEHLPG----------------------ILAQFKPDL--------VIYDAGV 223
V + + + PG LA + DL V YDAGV
Sbjct: 175 VFTFSMHCEVNFPGTKQNSDLDVPLPVGMEDDAYLQTLANYLSDLLSKVKPDLVFYDAGV 234
Query: 224 DPHQHDELGKLNLTDHG 240
DPH D LGKL LTD G
Sbjct: 235 DPHIGDRLGKLALTDAG 251
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L+ R+ I L LS + THHAFP +G+GFC+ ND+
Sbjct: 77 QRRIGLPWSPALANRTCVAVGGTILTAKLALSHGLACNTAGGTHHAFPSYGSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R L + G+V+K+LIVDLDVHQ
Sbjct: 137 AIACRVLQKFGLVQKILIVDLDVHQ 161
>gi|218248300|ref|YP_002373671.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 8801]
gi|218168778|gb|ACK67515.1| histone deacetylase superfamily [Cyanothece sp. PCC 8801]
Length = 305
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF+ DP VFTFS+HC N+P +KQ SDLDV + G DD G
Sbjct: 152 VLIVDLDVHQGDGTAVIFENDPTVFTFSLHCESNFPAKKQQSDLDVPLPEGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+Q + + H PD ++ D +
Sbjct: 208 ---YLQILAQYLPDLLS---------------------HVKPD-----LVLYDAGVDTHV 238
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
R G K+ + D +++ + VLS+CV +AG PVA+V
Sbjct: 239 SDRLG---KLALTDRGLYRR-------EMQVLSTCV---------------AAGYPVASV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ +L R +++HRA+ VY++
Sbjct: 274 IGGGYTKDLKKLVYRHSLLHRASRDVYQQ 302
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 114/273 (41%), Gaps = 51/273 (18%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
PI++ +Y +P HRFPM KF + L+ D I + K + P+ + ELVHT E
Sbjct: 4 PIVYHPQYVAPIPDEHRFPMLKFRLLYELLLSDS-IAEPKNIYTPEFPELGLIELVHTAE 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQRR-------- 142
Y++ + G K Q+ G WS L R T + A + L + L
Sbjct: 63 YINAYCQGTLDVKSQRRIGLPWSQELVQRTLIAVGGTILTAKLALQYGLASNTAGGTHHA 122
Query: 143 -PVFFDIAAVLADL-ICIAVYLTFFLQRRPVFFDI-------AAVL--ADLIHFMVGINT 191
P + + DL I V L ++ + D+ AV+ D F ++
Sbjct: 123 FPNYGSGFCIFNDLAIASRVLQQLGLVKKVLIVDLDVHQGDGTAVIFENDPTVFTFSLHC 182
Query: 192 Q---PVSGYQATLKEHLP---------GILAQF--------KPDLVIYDAGVDPHQHDEL 231
+ P Q+ L LP ILAQ+ KPDLV+YDAGVD H D L
Sbjct: 183 ESNFPAKKQQSDLDVPLPEGLDDDGYLQILAQYLPDLLSHVKPDLVLYDAGVDTHVSDRL 242
Query: 232 GKLNLTDHG----------ECISSSARISSEAG 254
GKL LTD G C+++ ++S G
Sbjct: 243 GKLALTDRGLYRREMQVLSTCVAAGYPVASVIG 275
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L QR+ I L L + + THHAFP++G+GFC+
Sbjct: 73 DVKSQRRIGLPWSQELVQRTLIAVGGTILTAKLALQYGLASNTAGGTHHAFPNYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + G+V+KVLIVDLDVHQ
Sbjct: 133 FNDLAIASRVLQQLGLVKKVLIVDLDVHQ 161
>gi|104779963|ref|YP_606461.1| histone deacetylase family hydrolase [Pseudomonas entomophila L48]
gi|95108950|emb|CAK13646.1| putative hydrolase; histone deacetylase family protein [Pseudomonas
entomophila L48]
Length = 304
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y PP+HRFPM KF ++LV D + + L+ P+ I L H +
Sbjct: 3 LPLIYHDDYSPEFPPDHRFPMDKFRLLRDHLV-DSGLTTDQALLRPEICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ NG+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 DYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAELALQHGVACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------ 182
P F + DL I+ YL + R + FD A +L D
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILQDTPEAITV 178
Query: 183 -IHFMVGINTQPV--------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+H + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAQSDWDIPLPRGMHDGAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L+LTD G
Sbjct: 239 DDALGYLHLTDEG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAELALQHGVACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 76/210 (36%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILQDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMHDGA 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+L GL RD VL + IP
Sbjct: 243 GYLHLTDE---------------------------------GLAARDELVLRQCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D LA+R I+H +A +
Sbjct: 270 VVGVIGGGYSKDRVALARRHGILHHSAARI 299
>gi|257060373|ref|YP_003138261.1| histone deacetylase [Cyanothece sp. PCC 8802]
gi|256590539|gb|ACV01426.1| Histone deacetylase [Cyanothece sp. PCC 8802]
Length = 305
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF+ DP VFTFS+HC N+P +KQ SDLDV + G DD G
Sbjct: 152 VLIVDLDVHQGDGTAVIFENDPTVFTFSLHCESNFPAKKQQSDLDVPLPEGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+Q + + H PD ++ D +
Sbjct: 208 ---YLQVLAQYLPDLLS---------------------HVKPD-----LVLYDAGVDTHV 238
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
R G K+ + D +++ + VLS+CV +AG PVA+V
Sbjct: 239 SDRLG---KLALTDRGLYRR-------EMQVLSTCV---------------AAGYPVASV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ +L R +++HRA+ VY++
Sbjct: 274 IGGGYTKDLKKLVYRHSLLHRASRDVYQQ 302
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 114/273 (41%), Gaps = 51/273 (18%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
PI++ +Y +P HRFPM KF + L+ D I + K + P+ + ELVHT E
Sbjct: 4 PIVYHPQYVAPIPDEHRFPMLKFRLLYELLLSDS-IAEPKNIYTPEFPELGLIELVHTAE 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQRR-------- 142
Y++ + G K Q+ G WS L R T + A + L + L
Sbjct: 63 YINAYCQGTLDVKSQRRIGLPWSQELVQRTLIAVGGTILTAKLALQYGLASNTAGGTHHA 122
Query: 143 -PVFFDIAAVLADL-ICIAVYLTFFLQRRPVFFDI-------AAVL--ADLIHFMVGINT 191
P + + DL I V L ++ + D+ AV+ D F ++
Sbjct: 123 FPNYGSGFCIFNDLAIASRVLQQLGLVKKVLIVDLDVHQGDGTAVIFENDPTVFTFSLHC 182
Query: 192 Q---PVSGYQATLKEHLP---------GILAQF--------KPDLVIYDAGVDPHQHDEL 231
+ P Q+ L LP +LAQ+ KPDLV+YDAGVD H D L
Sbjct: 183 ESNFPAKKQQSDLDVPLPEGLDDDGYLQVLAQYLPDLLSHVKPDLVLYDAGVDTHVSDRL 242
Query: 232 GKLNLTDHG----------ECISSSARISSEAG 254
GKL LTD G C+++ ++S G
Sbjct: 243 GKLALTDRGLYRREMQVLSTCVAAGYPVASVIG 275
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L QR+ I L L + + THHAFP++G+GFC+
Sbjct: 73 DVKSQRRIGLPWSQELVQRTLIAVGGTILTAKLALQYGLASNTAGGTHHAFPNYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + G+V+KVLIVDLDVHQ
Sbjct: 133 FNDLAIASRVLQQLGLVKKVLIVDLDVHQ 161
>gi|428213576|ref|YP_007086720.1| deacetylase [Oscillatoria acuminata PCC 6304]
gi|428001957|gb|AFY82800.1| deacetylase, histone deacetylase/acetoin utilization protein
[Oscillatoria acuminata PCC 6304]
Length = 305
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 91/210 (43%), Gaps = 60/210 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
++ + L + GDGTAFIF DP VFTFS+HC N+P RKQ SDLDV + VG DD +T
Sbjct: 152 VLIVDLDVHQGDGTAFIFKNDPDVFTFSLHCEANFPGRKQASDLDVPLPVGMEDDEYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
VA LSQ F L L D AG + L
Sbjct: 212 VAHYLPDLLSQ----------FQPDLVLYD----------------AGVDVHAGDRLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L GI R+ + VLS+C+ Y PVA
Sbjct: 246 ALSDTGIFRR------------------DMQVLSTCLAARY---------------PVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
V GGGYC D+ L R +++HRAA VY++
Sbjct: 273 VIGGGYCEDMRGLVYRHSLLHRAAAQVYRQ 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W ++ R+ I L L + THHAFPD G+GFC+
Sbjct: 73 DPKAQRRIGLPWTEAIAHRTCISIGGAILTAKLALEHGLACNTAGGTHHAFPDFGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R + + +RKVLIVDLDVHQ
Sbjct: 133 FNDLAIATRMIQKLAGIRKVLIVDLDVHQ 161
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ Y LPP+HRFPM KF + L+ D+V+ +Q P+ + E VH
Sbjct: 3 LPIVYHPDYVAPLPPSHRFPMEKFRLLYEMLLGDRVV-TPEQCHTPELPPQDWIESVHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
YV + G K Q+ G W+ +A R
Sbjct: 62 AYVQAYCQGTLDPKAQRRIGLPWTEAIAHR 91
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+ +LP +L+QF+PDLV+YDAGVD H D LGKL L+D G
Sbjct: 208 YLQTVAHYLPDLLSQFQPDLVLYDAGVDVHAGDRLGKLALSDTG 251
>gi|422300155|ref|ZP_16387688.1| histone deacetylase [Pseudomonas avellanae BPIC 631]
gi|422587598|ref|ZP_16662268.1| histone deacetylase family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422654668|ref|ZP_16717402.1| histone deacetylase family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330873513|gb|EGH07662.1| histone deacetylase family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330967685|gb|EGH67945.1| histone deacetylase family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|407987739|gb|EKG30457.1| histone deacetylase [Pseudomonas avellanae BPIC 631]
Length = 305
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 108/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF +YLV D + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPAFPQDHRFPMDKFRLLRDYLV-DSGLTRDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 76/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKDRH 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQKVWNDMGL 305
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVGKVLIFDCDVHQ 161
>gi|427732319|ref|YP_007078556.1| deacetylase [Nostoc sp. PCC 7524]
gi|427368238|gb|AFY50959.1| deacetylase, histone deacetylase/acetoin utilization protein
[Nostoc sp. PCC 7524]
Length = 305
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 93/212 (43%), Gaps = 64/212 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEVNFPGTKQQSDLDVPLPVGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEK--MRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LS+ + + G+ DP I L
Sbjct: 212 LASYLPDLLSEVKPDLVLYDAGV--------DPHIGD--------------------RLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L GI R+ + VLS+C ISAG PV
Sbjct: 244 KLALTDTGIFRR------------------EMQVLSTC---------------ISAGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A V GGGY D+ L R +++HRAA+ VY++
Sbjct: 271 ACVIGGGYADDLKSLVWRHSLLHRAASEVYRQ 302
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R+ I L LS + THHAFP +G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPALANRTCVAVGGTILTAQLALSQGLACNTAGGTHHAFPCYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + G+V+K+LIVDLDVHQ
Sbjct: 133 FNDLAIASRVLQKQGLVQKILIVDLDVHQ 161
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LP HRFPM KF K + L+ + V +Q P + + + ELVHT
Sbjct: 3 LPIIYHPDYVAPLPEGHRFPMPKFQKLYELLLTEGVA-HLEQFHTPTRPNSELIELVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+YV + G K Q+ G WS LA+R
Sbjct: 62 DYVQGYCEGTLDPKAQRRIGLPWSPALANR 91
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +LP +L++ KPDLV+YDAGVDPH D LGKL LTD G
Sbjct: 208 YLQTLASYLPDLLSEVKPDLVLYDAGVDPHIGDRLGKLALTDTG 251
>gi|416018674|ref|ZP_11565602.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|416024596|ref|ZP_11568657.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422403310|ref|ZP_16480368.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|320322646|gb|EFW78739.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330569|gb|EFW86548.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330873527|gb|EGH07676.1| histone deacetylase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 305
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YLV D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSTDFPADHRFPMDKFRLLRDYLV-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLNGDLSREDQRRLGLPWSEALARRTVRAVGGSLLTAEQALKHGMACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGVAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL +S IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLSRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWDDMGL 305
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|418292802|ref|ZP_12904732.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
gi|379064215|gb|EHY76958.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
Length = 306
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 118/268 (44%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y LPP HRFPM KF ++LV + + L+ P+ S+ I L H
Sbjct: 3 LPLVYHDDYSPPLPPGHRFPMEKFRLLRDHLVALGLT-TDEALLRPELCSQDILALAHAP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ + E + G WS LA R + + H +A +L
Sbjct: 62 DYVTRYCSGEMSRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD-----------IAAVLADLI--- 183
D A+ + DL IA+YL + R + FD I +AD +
Sbjct: 122 --AHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENVADAVTVS 179
Query: 184 ------------HFMVGINTQPVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
H I P G +A LK + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+LTD G SA + G D
Sbjct: 240 DALGLLSLTDAGLAARDSAVLDHCLGRD 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VIALYLLESGRVGRVLIFDCDVHQ 161
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 74/204 (36%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + T S+HC +N+P RK SD D+ + G D V
Sbjct: 160 HQGDGTARILENVADAVTVSLHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL + P++ + AG + D AL
Sbjct: 213 ---------HDTLNYLLPIYQPDLVLYD---------AGVDVHRDDALG----------- 243
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+LS GL RD VLD + IPV + GGGY D
Sbjct: 244 ----------------------LLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYDKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R +H +A ++ GL
Sbjct: 282 RALLARRHATLHVSAHSAWQRHGL 305
>gi|156404296|ref|XP_001640343.1| predicted protein [Nematostella vectensis]
gi|156227477|gb|EDO48280.1| predicted protein [Nematostella vectensis]
Length = 308
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 91/209 (43%), Gaps = 64/209 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M + L + GDGTA IF +P VFTFS H +N+P RKQ S+LD++++ G DD T
Sbjct: 150 VMIVDLDVHQGDGTASIFQNEPNVFTFSAHSEKNFPLRKQTSNLDLSLECGMDDLEYLTT 209
Query: 469 A---LTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
LTW+ + + + + G+ DP + D L
Sbjct: 210 VCAHLTWLLDMWRPDIVLYDAGV--------DPHV--------------------DDVLG 241
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L +G+ + L+ VL A+ GIP
Sbjct: 242 RLKLTDNGLFERDLM---------------------------------VLRMALHRGIPC 268
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHV 614
ATV GGGY DID+LA R +IIHRAAT V
Sbjct: 269 ATVIGGGYDDDIDKLALRHSIIHRAATKV 297
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+IH ++Y C PP HRF M+KF+K +L++D V+ Q+ P S VHT
Sbjct: 1 LPVIHHDQYSCPFPPQHRFKMAKFTKLMEWLLKDNVV-IPNQVYRPFFASYDDLIKVHTP 59
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTD 124
+YV F G +E++ K GF WS GL R R +
Sbjct: 60 DYVRNFLLGTISERDMKQIGFPWSEGLVRRTRME 93
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP HG+GFC+ ND+A+ A YL+ + +V +V+IVDLDVHQ
Sbjct: 116 GTHHAFPSHGSGFCIFNDLAITASYLLDNNLVTRVMIVDLDVHQ 159
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+ HL +L ++PD+V+YDAGVDPH D LG+L LTD+G
Sbjct: 206 YLTTVCAHLTWLLDMWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 249
>gi|75909399|ref|YP_323695.1| histone deacetylase superfamily protein [Anabaena variabilis ATCC
29413]
gi|75703124|gb|ABA22800.1| Histone deacetylase superfamily [Anabaena variabilis ATCC 29413]
Length = 305
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 94/213 (44%), Gaps = 60/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEVNFPGTKQHSDLDVPLPVGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A LS+ + +F DP I + +AL+
Sbjct: 212 LASYLPDLLSEIKPDL------VFYDAGVDPHIGD---------------RLGKLALSDT 250
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L R + VL++C ISAG PVA
Sbjct: 251 GLFRR-----------------------EMQVLTTC---------------ISAGYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D+ L R +++HRAA+ VY++ L
Sbjct: 273 VIGGGYADDMTSLVWRHSLLHRAASEVYRQYKL 305
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LPII+ Y LP HRFPM+KF K + L+ D V +++Q P + ELVH
Sbjct: 1 MELPIIYHPHYVAPLPEGHRFPMAKFKKLYELLLSDDVA-QTEQFYTPILPHPELIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
T +YV + G K Q+ G WS LA+R
Sbjct: 60 TPDYVRSYCEGTLDTKAQRRIGLPWSPALANR 91
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R+ I L L+ + THHAFP +G+GFC+
Sbjct: 73 DTKAQRRIGLPWSPALANRTCIAVGGTILTAQLALNQGLACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + +V+K+LIVDLDVHQ
Sbjct: 133 FNDIAIASRVLQQQQLVKKILIVDLDVHQ 161
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +LP +L++ KPDLV YDAGVDPH D LGKL L+D G
Sbjct: 207 AYLQTLASYLPDLLSEIKPDLVFYDAGVDPHIGDRLGKLALSDTG 251
>gi|332706616|ref|ZP_08426677.1| putative deacetylase [Moorea producens 3L]
gi|332354500|gb|EGJ33979.1| putative deacetylase [Moorea producens 3L]
Length = 283
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 90/209 (43%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF + +VFTFSMHC N+P +KQ SDLD+ + G DD
Sbjct: 130 ILIVDLDVHQGDGTAFIFQNEHSVFTFSMHCEVNFPSKKQKSDLDIPLPEGMDD---DAY 186
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T +L + N L L D ++ H L
Sbjct: 187 LQTLAKYLPDLLSGFKPN------LVLYDAGVDPHVEDH----------------LGKLA 224
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ + VLS+CV +AGIPVA+V
Sbjct: 225 LTDTGIYRR------------------DMQVLSTCV---------------AAGIPVASV 251
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D D L R +++HRAA VY++
Sbjct: 252 IGGGYGNDFDALIYRHSLLHRAALQVYRQ 280
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCL 518
D R + L W L +R+ I L LS THHAFP++G+GFC+
Sbjct: 51 DPKAVRRIGLPWSPALVKRTCTAVGGTILTAKLALSQGLACNTAGGTHHAFPNYGSGFCI 110
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + G+V+K+LIVDLDVHQ
Sbjct: 111 FNDLAIASRVLQQLGLVQKILIVDLDVHQ 139
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG----------ECISSS 246
Y TL ++LP +L+ FKP+LV+YDAGVDPH D LGKL LTD G C+++
Sbjct: 186 YLQTLAKYLPDLLSGFKPNLVLYDAGVDPHVEDHLGKLALTDTGIYRRDMQVLSTCVAAG 245
Query: 247 ARISSEAG 254
++S G
Sbjct: 246 IPVASVIG 253
>gi|67925050|ref|ZP_00518430.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 8501]
gi|67853097|gb|EAM48476.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 8501]
Length = 305
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 91/208 (43%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GDGTA IF+ D VFTFSMHC N+P KQ SDLDVA+ G DD G
Sbjct: 152 VLIIDLDVHQGDGTAKIFENDETVFTFSMHCESNFPREKQKSDLDVALPKGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ LSQ LL P++ + AG + +
Sbjct: 208 ---YLQILSQYLPD---------LLSEIKPDLILYD---------AGVDIHANDHFGKLS 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ ++ VLSSC I+ G PVA+V
Sbjct: 247 LTDTGIYRREML------------------VLSSC---------------IAEGYPVASV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY D+ L R +++HRAA VYK
Sbjct: 274 IGGGYAKDLKSLVYRHSLLHRAAKDVYK 301
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 119/276 (43%), Gaps = 51/276 (18%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI++ ++Y LP HRFPM KFS + L+++K+ID + + P+ S+ ELVH
Sbjct: 1 MNLPIVYDHQYVVPLPNGHRFPMGKFSLLYELLLKEKIIDFN-DIYTPKLPENSLLELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQRR----- 142
+Y+ + G T+K Q+ G WS L R T + A + L F L
Sbjct: 60 CPDYITGYCQGTLTDKAQRRIGLPWSEALVKRTCIAVGGTILTAKLALKFGLACNTAGGT 119
Query: 143 ----PVFFDIAAVLADL-ICIAVYLTFFLQRRPVFFDIAAVLAD-----------LIHFM 186
P + + DL I V L ++ + D+ D + F
Sbjct: 120 HHAFPNYGSGFCIFNDLAIATCVLQQLKLVQKVLIIDLDVHQGDGTAKIFENDETVFTFS 179
Query: 187 VGINTQ-PVSGYQATLKEHLPG---------ILAQFKP--------DLVIYDAGVDPHQH 228
+ + P ++ L LP IL+Q+ P DL++YDAGVD H +
Sbjct: 180 MHCESNFPREKQKSDLDVALPKGLDDDGYLQILSQYLPDLLSEIKPDLILYDAGVDIHAN 239
Query: 229 DELGKLNLTDHG----------ECISSSARISSEAG 254
D GKL+LTD G CI+ ++S G
Sbjct: 240 DHFGKLSLTDTGIYRREMLVLSSCIAEGYPVASVIG 275
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
D R + L W L +R+ I L+ THHAFP++G+GFC+
Sbjct: 74 DKAQRRIGLPWSEALVKRTCIAVGGTILTAKLALKFGLACNTAGGTHHAFPNYGSGFCIF 133
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A L + +V+KVLI+DLDVHQ
Sbjct: 134 NDLAIATCVLQQLKLVQKVLIIDLDVHQ 161
>gi|71733714|ref|YP_276468.1| histone deacetylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554267|gb|AAZ33478.1| histone deacetylase family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 305
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YLV D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLV-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLNGDLSREDQRRLGLPWSEALARRTVSAVGGSLLTAEQALKHGMACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ANYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDANYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGVAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL +S IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLSRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWDDMGL 305
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVSAVGGSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|428781211|ref|YP_007172997.1| deacetylase [Dactylococcopsis salina PCC 8305]
gi|428695490|gb|AFZ51640.1| deacetylase, histone deacetylase/acetoin utilization protein
[Dactylococcopsis salina PCC 8305]
Length = 307
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 94/209 (44%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHCG N+P RKQ SDLD+ + G DD G +
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDPRVFTFSMHCGDNFPGRKQKSDLDIPLPQGLDDDGYLQI 211
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
L Q + ++ + +F DP ++ + +AL+ R
Sbjct: 212 ---LAKQLPQVLDAVKPD--LVFYDAGVDPHVDD---------------RLGKLALSDR- 250
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
GI R+ VLS+C+ Y P A V
Sbjct: 251 ----GIYRR------------------DRAVLSTCLAENY---------------PTACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ LAQR +++HRAA V+++
Sbjct: 274 IGGGYSEDLTVLAQRHSLLHRAAATVFEQ 302
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 112/261 (42%), Gaps = 29/261 (11%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LPP HRFPM+KF + L+ D +I + +Q+ +P+ ELVHT
Sbjct: 3 LPIIYHPDYVTPLPPGHRFPMAKFGLLYEILLADGII-EPQQVHQPEIAPREWLELVHTS 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
EYV + NG K Q+ G WS LA R T + A
Sbjct: 62 EYVEDYCNGTLDSKAQRRIGLPWSEQLAHRTCLAVGGTILTAKLALEQGLACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQP 193
P + +F D+A I +V L L + + D+ D F+ + +
Sbjct: 122 AFPDYGAGFCIFNDLA------IAPSVMLNLGLVEKILIVDLDVHQGDGTAFIFQDDPR- 174
Query: 194 VSGYQATLKEHLPGILAQFKPDLVI-YDAGVDPHQHDELGKLNLTDHGECISSSARISSE 252
V + ++ PG + K DL I G+D + ++ L + + + +
Sbjct: 175 VFTFSMHCGDNFPG--RKQKSDLDIPLPQGLDDDGYLQILAKQLPQVLDAVKPDL-VFYD 231
Query: 253 AGVDPHQHDELGKLNLTDHGV 273
AGVDPH D LGKL L+D G+
Sbjct: 232 AGVDPHVDDRLGKLALSDRGI 252
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCL 518
D R + L W L+ R+ I L L THHAFPD+GAGFC+
Sbjct: 73 DSKAQRRIGLPWSEQLAHRTCLAVGGTILTAKLALEQGLACNTAGGTHHAFPDYGAGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A ++ G+V K+LIVDLDVHQ
Sbjct: 133 FNDLAIAPSVMLNLGLVEKILIVDLDVHQ 161
>gi|257482169|ref|ZP_05636210.1| histone deacetylase family protein [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422597283|ref|ZP_16671558.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422682025|ref|ZP_16740292.1| histone deacetylase family protein [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|330987575|gb|EGH85678.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011366|gb|EGH91422.1| histone deacetylase family protein [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 305
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YLV D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLV-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLNGDLSREDQRRLGLPWSEALARRTVRAVGGSLLTAEQALKHGMACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 74/202 (36%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGVAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL ++ IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLNRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWDDMGL 305
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|289623985|ref|ZP_06456939.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289648772|ref|ZP_06480115.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422584154|ref|ZP_16659267.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422605128|ref|ZP_16677143.1| histone deacetylase family protein [Pseudomonas syringae pv. mori
str. 301020]
gi|298156609|gb|EFH97704.1| deacetylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330868974|gb|EGH03683.1| histone deacetylase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330888785|gb|EGH21446.1| histone deacetylase family protein [Pseudomonas syringae pv. mori
str. 301020]
Length = 305
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YLV D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLV-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLNGDLSREDQRRLGLPWSEALARRTVRAVGGSLLTAEQALKHGMACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGVAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL +S IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLSRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWDDMGL 305
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEQALKHGMACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|428776510|ref|YP_007168297.1| histone deacetylase [Halothece sp. PCC 7418]
gi|428690789|gb|AFZ44083.1| Histone deacetylase [Halothece sp. PCC 7418]
Length = 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 92/210 (43%), Gaps = 64/210 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTAF+F DP VFTFSMHCG N+P RKQ SDLD+ + G DD G +
Sbjct: 152 VLIVDLDVHQGDGTAFVFQDDPRVFTFSMHCGDNFPGRKQQSDLDLPLPKGLDDEGYLQI 211
Query: 469 A---LTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
L V Q + G+ DP ++ + +AL+
Sbjct: 212 LAKHLPEVLAAVQPDLVFYDAGV--------DPHVDD---------------RLGKLALS 248
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
R L R VLS+C+ +DY P
Sbjct: 249 DRGLYRR-----------------------DRLVLSTCL----AQDY-----------PT 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
A V GGGY D++ LAQR +++HRAAT V+
Sbjct: 271 ACVIGGGYSEDLEVLAQRHSLLHRAATAVF 300
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 105/256 (41%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LP HRFPM+KFS L+ D VI + +Q+ +P+ EL+HT
Sbjct: 3 LPIIYHPDYVTPLPKGHRFPMAKFSLLQEILIADGVI-QPQQVHQPELPPREWLELIHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
+YV + +G K Q+ G WS L R T + A
Sbjct: 62 DYVDAYCDGTLDPKAQRRIGLPWSPELVRRTCLAVGGTILTAKLALEQGIACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ- 192
P + +F D+A + AV L L ++ + D+ D F+ + +
Sbjct: 122 AFPDYGAGFCIFNDLA------VAPAVMLALGLVKKVLIVDLDVHQGDGTAFVFQDDPRV 175
Query: 193 -----------PVSGYQATLKEHLPG---------ILAQ--------FKPDLVIYDAGVD 224
P Q+ L LP ILA+ +PDLV YDAGVD
Sbjct: 176 FTFSMHCGDNFPGRKQQSDLDLPLPKGLDDEGYLQILAKHLPEVLAAVQPDLVFYDAGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
PH D LGKL L+D G
Sbjct: 236 PHVDDRLGKLALSDRG 251
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 452 LDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAF 509
+D D D R + L W L +R+ I L L THHAF
Sbjct: 64 VDAYCDGTLDPKAQRRIGLPWSPELVRRTCLAVGGTILTAKLALEQGIACNTAGGTHHAF 123
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
PD+GAGFC+ ND+A+A ++ G+V+KVLIVDLDVHQ
Sbjct: 124 PDYGAGFCIFNDLAVAPAVMLALGLVKKVLIVDLDVHQ 161
>gi|424073895|ref|ZP_17811308.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407995284|gb|EKG35818.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 305
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFDIAAVLADLIHFMVGINTQPV--- 194
+D A +AV + LQ + + FD D ++ N +
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADNEDAITVS 179
Query: 195 --------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ Y + + L +L +KPDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDQG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 77/202 (38%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I + T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADNEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + G+
Sbjct: 284 ALARRHGILHHSAQRVWNDMGM 305
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|152996916|ref|YP_001341751.1| histone deacetylase superfamily protein [Marinomonas sp. MWYL1]
gi|150837840|gb|ABR71816.1| histone deacetylase superfamily [Marinomonas sp. MWYL1]
Length = 308
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 102/254 (40%), Gaps = 49/254 (19%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ Y P HRFPM KF L R++ I + P +S + H K
Sbjct: 6 LPLVFHPNYSIPFPAGHRFPMRKFGLLAESL-REQGILTDENEYTPAPLSLKVLMAAHHK 64
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYL------ 135
EYV +F G+ +++E+K G WS L R + T+ H +A +L
Sbjct: 65 EYVQRFIRGELSKREEKEIGLPWSEWLVERTLRAVSGTMLTTELAFEHGLACHLAGGTHH 124
Query: 136 --PFFLQRRPVFFDIAAVLADLICIAVY----------------LTFFLQRRPVFFDIAA 177
P +F D+A +I + FF R DI
Sbjct: 125 AHPSHGSGFCIFNDLAVAALAMIGSGRAKKILILDCDVHQGDGTIAFFKDR----VDIIP 180
Query: 178 VLADL------IHFMVGINTQPVSG-----YQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
V I GIN G Y + LK LP ILA+ +PD V YDAGVD H
Sbjct: 181 VSWHCEENYPPIKQTAGINIAIPKGANDQEYLSILKSTLPAILAEQQPDFVFYDAGVDVH 240
Query: 227 QHDELGKLNLTDHG 240
Q D LG +NLTD G
Sbjct: 241 QDDRLGYVNLTDQG 254
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
+ + L W +L +R+ + + + L + THHA P HG+GFC+ ND+
Sbjct: 80 EKEIGLPWSEWLVERTLRAVSGTMLTTELAFEHGLACHLAGGTHHAHPSHGSGFCIFNDL 139
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRSI 552
A+AA +I G +K+LI+D DVHQ +I
Sbjct: 140 AVAALAMIGSGRAKKILILDCDVHQGDGTI 169
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 60/218 (27%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
G + + LI++ + + GDGT F + S HC NYP KQ + +++AI G
Sbjct: 148 GSGRAKKILILDCDV--HQGDGTIAFFKDRVDIIPVSWHCEENYPPIKQTAGINIAIPKG 205
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
N+ +L +L+ + P I + F
Sbjct: 206 A------------------------NDQEYLSILKSTLPAI--------LAEQQPDFVFY 233
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAI 579
+ +DVHQ R L ++ G+ RD YVL+T +
Sbjct: 234 D--------------------AGVDVHQDDR------LGYVNLTDQGILERDKYVLETCV 267
Query: 580 SAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
+P A V GGGY +++A+R +++H+AA ++KE
Sbjct: 268 ELKLPTACVIGGGYDRQEEKVARRHSLLHQAANQIWKE 305
>gi|17230842|ref|NP_487390.1| histone deacetylase/AcuC/AphA family protein [Nostoc sp. PCC 7120]
gi|17132445|dbj|BAB75049.1| histone deacetylase/AcuC/AphA family protein [Nostoc sp. PCC 7120]
Length = 305
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 94/215 (43%), Gaps = 64/215 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEINFPGTKQHSDLDVPLPVGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEK--MRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LS+ + + G+ DP I L
Sbjct: 212 LASYLPDLLSEIKPDLVLYDAGV--------DPHIGD--------------------RLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ R+ + VL++CV SAG PV
Sbjct: 244 KLALTDTGLFRR------------------EMQVLTTCV---------------SAGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
A V GGGY D+ L R +++HRAA+ VY++ L
Sbjct: 271 ACVIGGGYADDMTSLVWRHSLVHRAASQVYRQYKL 305
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R+ I L LS + THHAFP +G+GFC+
Sbjct: 73 DTKAQRRIGLPWSPALANRTCIAVGGTILTAQLALSQGLACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + IV+K+LIVDLDVHQ
Sbjct: 133 FNDLAIASRVLQQQQIVQKILIVDLDVHQ 161
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LPII+ Y LP HRFPM+KF K + L+ D V +++Q P + ELVH
Sbjct: 1 MELPIIYHPDYVAPLPEGHRFPMAKFKKLYELLLSDDVA-QTEQFYTPTLPPLELIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
T +YV + G K Q+ G WS LA+R
Sbjct: 60 TPDYVRSYCEGTLDTKAQRRIGLPWSPALANR 91
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +LP +L++ KPDLV+YDAGVDPH D LGKL LTD G
Sbjct: 207 AYLQTLASYLPDLLSEIKPDLVLYDAGVDPHIGDRLGKLALTDTG 251
>gi|440742521|ref|ZP_20921846.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP39023]
gi|440377358|gb|ELQ14007.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP39023]
Length = 305
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y++++ +G + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYINRYLDGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQRRPV----FFD--------IAAVLADLIHFM-VG 188
+D A +AV F LQ V FD A +LAD + V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQFLLQSGSVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 189 INTQ---PVSGYQATLKEHLPG-----------------ILAQFKPDLVIYDAGVDPHQH 228
++ + P Q+ LP +L +KPDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGDVDYLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDQG 251
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 75/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G D V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDVDYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKDRR 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +++L++ G V KVLI D DVHQ
Sbjct: 137 AVISQFLLQSGSVDKVLIFDCDVHQ 161
>gi|416407187|ref|ZP_11688248.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 0003]
gi|357260908|gb|EHJ10237.1| Histone deacetylase superfamily [Crocosphaera watsonii WH 0003]
Length = 283
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 91/208 (43%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GDGTA IF+ D VFTFSMHC N+P KQ SDLDVA+ G DD G
Sbjct: 130 VLIIDLDVHQGDGTAKIFENDETVFTFSMHCESNFPREKQKSDLDVALPKGLDDDG---- 185
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ LSQ LL P++ + AG + +
Sbjct: 186 ---YLQILSQYLPD---------LLSEIKPDLILYD---------AGVDIHANDHFGKLS 224
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ ++ VLSSC I+ G PVA+V
Sbjct: 225 LTDTGIYRREML------------------VLSSC---------------IAEGYPVASV 251
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY D+ L R +++HRAA VYK
Sbjct: 252 IGGGYAKDLKSLVYRHSLLHRAAKDVYK 279
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
D R + L W L +R+ I L+ THHAFP++G+GFC+
Sbjct: 52 DKAQRRIGLPWSEALVKRTCIAVGGTILTAKLALKFGLACNTAGGTHHAFPNYGSGFCIF 111
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A L + +V+KVLI+DLDVHQ
Sbjct: 112 NDLAIATCVLQQLKLVQKVLIIDLDVHQ 139
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L ++LP +L++ KPDL++YDAGVD H +D GKL+LTD G
Sbjct: 185 GYLQILSQYLPDLLSEIKPDLILYDAGVDIHANDHFGKLSLTDTG 229
>gi|424069461|ref|ZP_17806907.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407994543|gb|EKG35114.1| histone deacetylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 305
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 73/202 (36%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGLAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL + IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLGRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|113475495|ref|YP_721556.1| histone deacetylase superfamily protein [Trichodesmium erythraeum
IMS101]
gi|110166543|gb|ABG51083.1| histone deacetylase superfamily [Trichodesmium erythraeum IMS101]
Length = 303
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 92/212 (43%), Gaps = 58/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA+IF DP VFTFSMHCG N+P RKQ SDLDV + G DD
Sbjct: 150 VLIVDLDVHQGDGTAWIFQDDPTVFTFSMHCGINFPSRKQVSDLDVPLPEGMDDE----- 204
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+Q +LL P++ + AG AL
Sbjct: 205 --LYLQTLAQH---------LPYLLSEVKPDLVLYD---------AGVDTHIHDALGKLA 244
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ + VLS+C + G PVA+V
Sbjct: 245 LTDTGIFRR------------------EMQVLSTC---------------LGKGYPVASV 271
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GGGY D++ L +++HRAA V+ + L
Sbjct: 272 IGGGYTKDMNSLVYTHSLLHRAARDVFYQYRL 303
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R+ I L L + THHAFP +G+GFC+
Sbjct: 71 DPKAQRRIGLPWSQALANRTCIAVGGTILTAQLALKHGLACNTAGGTHHAFPSYGSGFCI 130
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R + + G+V KVLIVDLDVHQ
Sbjct: 131 FNDLAIATRVMQKLGLVEKVLIVDLDVHQ 159
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LP+I+ Y +PP HRFPM+KF + L+ D+V + + P EL+H
Sbjct: 1 MNLPVIYHPNYVAPIPPGHRFPMAKFQLLYEMLLVDEV---TNYFLTPNFPPLEWIELIH 57
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y+ K+ G K Q+ G WS LA+R
Sbjct: 58 HPNYIKKYCQGTLDPKAQRRIGLPWSQALANR 89
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 34/44 (77%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +HLP +L++ KPDLV+YDAGVD H HD LGKL LTD G
Sbjct: 206 YLQTLAQHLPYLLSEVKPDLVLYDAGVDTHIHDALGKLALTDTG 249
>gi|170719842|ref|YP_001747530.1| histone deacetylase superfamily protein [Pseudomonas putida W619]
gi|169757845|gb|ACA71161.1| histone deacetylase superfamily [Pseudomonas putida W619]
Length = 304
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y PP HRFPM KF ++LV + + + L+ PQ I L H +
Sbjct: 3 LPLIYHDDYSPEFPPEHRFPMDKFRLLRDHLV-ESGLTTDQALLRPQICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 DYIERYMHGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEMALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
FD A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHFDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILQDTPDAITVS 179
Query: 183 IHFMVGINTQPV--------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + + Y +++ L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEQNFPARKAHSDWDIPLPRGMGDAAYLKVVEDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDAG 251
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 70/215 (32%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 HRVLIFDCDV--HQGDGTARILQDTPDAITVSLHCEQNFPARKAHSDWDIPLPRGMGDAA 207
Query: 465 NRTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
V AL ++ L Q + + G+ ++++ D G+ + D
Sbjct: 208 YLKVVEDALNYLLPLYQPDLVLYDAGV----------DVHK--------DDALGYLQLTD 249
Query: 522 MALAAR--YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAI 579
LAAR +++RH + R
Sbjct: 250 AGLAARDEHVMRHCLGRD------------------------------------------ 267
Query: 580 SAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHV 614
IPV V GGGY D LA+R I+H +A V
Sbjct: 268 ---IPVVGVIGGGYSKDRHALARRHGILHHSAAKV 299
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEMALQHGLACHLAGGTHHAHFDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
>gi|399069021|ref|ZP_10749252.1| deacetylase, histone deacetylase/acetoin utilization protein
[Caulobacter sp. AP07]
gi|398045378|gb|EJL38108.1| deacetylase, histone deacetylase/acetoin utilization protein
[Caulobacter sp. AP07]
Length = 309
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 90/208 (43%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF+ DP+VFTFSMH +N+P RK SDLD+ + G D
Sbjct: 159 VLVVDLDVHQGDGTARIFEGDPSVFTFSMHAEKNFPARKAVSDLDIDLPDGMGDE----- 213
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ LS G+ LL P++ F+
Sbjct: 214 --AYLKALS---------GVLPELLARVAPDLVFFNA----------------------- 239
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L LS GL R+ +VL + + IPVA V
Sbjct: 240 -------------GVDPHADDR------LGRLSLSDEGLARREAFVLGSCLEREIPVAGV 280
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY ADID+LA R ++HRAA +
Sbjct: 281 IGGGYDADIDRLAHRHALLHRAAREALR 308
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAGFC+ ND+A+AAR L G VR+VL+VDLDVHQ
Sbjct: 125 GSHHAQADTGAGFCVFNDVAVAARRLQAEGAVRQVLVVDLDVHQ 168
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L LP +LA+ PDLV ++AGVDPH D LG+L+L+D G
Sbjct: 215 YLKALSGVLPELLARVAPDLVFFNAGVDPHADDRLGRLSLSDEG 258
>gi|392422523|ref|YP_006459127.1| histone deacetylase family protein [Pseudomonas stutzeri CCUG
29243]
gi|390984711|gb|AFM34704.1| histone deacetylase family protein [Pseudomonas stutzeri CCUG
29243]
Length = 306
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 115/259 (44%), Gaps = 45/259 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y LPP HRFPM KF ++LV + + L+ P+ S+ I L H
Sbjct: 3 LPLVYHDDYSPPLPPGHRFPMEKFRLLRDHLVALGLT-TDEALLRPELCSQDILALAHAP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ + E + G WS LA R + + H +A +L
Sbjct: 62 DYVTRYCSGEMSRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
D A+ + DL IA+YL + R + FD A +L ++
Sbjct: 122 --AHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENVPDAVTIS 179
Query: 183 -----------IHFMVGINTQPVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
H I P G +A LK + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSA 247
D LG L+LTD G SA
Sbjct: 240 DALGLLSLTDAGLAARDSA 258
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHHDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VIALYLLESGRVGRVLIFDCDVHQ 161
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 75/207 (36%), Gaps = 64/207 (30%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV---ALTWV 473
+ GDGTA I + P T S+HC +N+P RK SD D+ + G D V L ++
Sbjct: 160 HQGDGTARILENVPDAVTISLHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVVHDTLNYL 219
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+ Q + + G+ +++R D G + D LAA
Sbjct: 220 LPIYQPDLVLYDAGV----------DVHR--------DDALGLLSLTDAGLAA------- 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
RD VLD + IPV + GGGY
Sbjct: 255 ------------------------------------RDSAVLDHCLGRNIPVVGLIGGGY 278
Query: 594 CADIDQLAQRQTIIHRAATHVYKERGL 620
D LA+R +H +A ++ GL
Sbjct: 279 DKDRVLLARRHATLHVSAAAAWQRHGL 305
>gi|333907538|ref|YP_004481124.1| histone deacetylase superfamily protein [Marinomonas posidonica
IVIA-Po-181]
gi|333477544|gb|AEF54205.1| histone deacetylase superfamily [Marinomonas posidonica
IVIA-Po-181]
Length = 317
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 102/250 (40%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ Y P HRFPM KF + L R++ I S+ +P+ +S ++ H K
Sbjct: 6 LPLVFHPHYSIPFPAGHRFPMHKFRLLADTL-REQGILTSENEYQPEPLSLAVLMAAHDK 64
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YVH+F G+ T KE+K G WS L R + + H +A +L
Sbjct: 65 QYVHRFIRGELTAKEEKDIGLPWSEWLVERTLRAVSGTILTSQLALQHGLACHLAGGTHH 124
Query: 142 -RPVFFDIAAVLADLICIAVYLTFFLQRRPVFF---DIAAVLADLIHFMVGINTQPVSG- 196
P + DL A+ L Q + V D+ + F N PVS
Sbjct: 125 AHPAHGAGFCIFNDLAVAALNLVNTKQAKKVLILDCDVHQGDGTIAFFPDHPNIVPVSWH 184
Query: 197 --------------------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
Y LK+ LP +LA+ + D + YDAGVD HQ D
Sbjct: 185 CEENYPNVKQTAGINIAIPKGATDETYLEILKDTLPTLLAEHRADFIFYDAGVDVHQEDR 244
Query: 231 LGKLNLTDHG 240
LG + L+D G
Sbjct: 245 LGYVKLSDQG 254
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 60/214 (28%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K + + LI++ + + GDGT F P + S HC NYP KQ + +++AI G
Sbjct: 150 KQAKKVLILDCDV--HQGDGTIAFFPDHPNIVPVSWHCEENYPNVKQTAGINIAIPKGAT 207
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
D +L +L+ + P + +H A F +
Sbjct: 208 DE------------------------TYLEILKDTLPTL--------LAEHRADFIFYD- 234
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
+DVHQ R L + G+ RD YV+ T +
Sbjct: 235 -------------------AGVDVHQEDR------LGYVKLSDQGVLARDTYVIKTCLDQ 269
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
GIP A V GGGY + D++A R +++H+AA V+
Sbjct: 270 GIPTACVIGGGYDREEDKVAWRHSLLHQAAQQVW 303
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
+ + L W +L +R+ + + I L L + THHA P HGAGFC+ ND+
Sbjct: 80 EKDIGLPWSEWLVERTLRAVSGTILTSQLALQHGLACHLAGGTHHAHPAHGAGFCIFNDL 139
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRSI 552
A+AA L+ +KVLI+D DVHQ +I
Sbjct: 140 AVAALNLVNTKQAKKVLILDCDVHQGDGTI 169
>gi|428774306|ref|YP_007166094.1| histone deacetylase [Cyanobacterium stanieri PCC 7202]
gi|428688585|gb|AFZ48445.1| Histone deacetylase [Cyanobacterium stanieri PCC 7202]
Length = 303
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA+ F +P VFTFSMHC N+P+RKQ SDLD+ + +G DD G +
Sbjct: 152 ILIVDLDVHQGDGTAYTFAHEPRVFTFSMHCEANFPYRKQTSDLDIPLPIGLDDDGYLQI 211
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+ + L Q ++R + + L D ++ TH D CL
Sbjct: 212 LASHLPHLLQ---EVRPD------IVLYDGGVD---THRG--DRLGKLCLTET------- 250
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
GI R+ + VLS+C ++ G PVA V
Sbjct: 251 ----GIYRR------------------EMQVLSTC---------------LAQGYPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY DI +L R +++HRAA K
Sbjct: 274 IGGGYSKDIHELVYRHSLLHRAAQECSK 301
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 107/255 (41%), Gaps = 47/255 (18%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LP+++ Y LP HRFPM KF + L++D + + +P S I +LVH
Sbjct: 1 MNLPVVYHADYVTPLPQEHRFPMPKFKLLYELLLKDGITSPTLTH-QPLIASAEILQLVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFL-------- 139
YV ++ NG K + G WS GL R T T + A + L + L
Sbjct: 60 HPHYVEQYCNGSLDTKALRRIGLPWSEGLVKRTCTAVAGTILTAQLALKYGLCCNTAGGT 119
Query: 140 -QRRPVFFDIAAVLADLICIAVYL------------------------TFFLQRRPVFFD 174
P + + DL + YL TF + R F
Sbjct: 120 HHAFPEYGSGFCIFNDLAIASKYLLEHQLVEKILIVDLDVHQGDGTAYTFAHEPRVFTFS 179
Query: 175 IAA--------VLADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
+ +DL I +G++ GY L HLP +L + +PD+V+YD GVD
Sbjct: 180 MHCEANFPYRKQTSDLDIPLPIGLDD---DGYLQILASHLPHLLQEVRPDIVLYDGGVDT 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LGKL LT+ G
Sbjct: 237 HRGDRLGKLCLTETG 251
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L +R+ I L L + THHAFP++G+GFC+
Sbjct: 73 DTKALRRIGLPWSEGLVKRTCTAVAGTILTAQLALKYGLCCNTAGGTHHAFPEYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A++YL+ H +V K+LIVDLDVHQ
Sbjct: 133 FNDLAIASKYLLEHQLVEKILIVDLDVHQ 161
>gi|410094348|ref|ZP_11290785.1| histone deacetylase superfamily protein [Pseudomonas viridiflava
UASWS0038]
gi|409758219|gb|EKN43550.1| histone deacetylase superfamily protein [Pseudomonas viridiflava
UASWS0038]
Length = 305
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++L+ D + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLI-DSGLTRDVQLLRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALDHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ S Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---SDYLKVVDDLLNYLLPIYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDQG 251
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 78/202 (38%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G D+ V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDSDYLKVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL + P++ + AG
Sbjct: 213 -------DDLLNYLLPIYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLKLTDQGLADRDEAVLRHCLGRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+++ GL
Sbjct: 284 ALARRHGILHHSAQRVWQDLGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALDHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|404401075|ref|ZP_10992659.1| histone deacetylase [Pseudomonas fuscovaginae UPB0736]
Length = 306
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y PP HRFPM KF ++LV D + + ++L+ P I L H +
Sbjct: 3 LPLIYHDDYSPEFPPEHRFPMDKFRLLRDHLV-DSGLTRDQELLRPDLCPVDILTLAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 DYIERYRAGELSREDQRRLGLPWSEALARRTIRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +AV +FL+ R + FD A +L D
Sbjct: 122 --AHYDHPAGFCIFNDLAVISRYFLESGRVSRVLIFDCDVHQGDGTARILEDTPEAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLRVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDEG 251
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 80/214 (37%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I + P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILEDTPEAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LRVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD VL + IPV
Sbjct: 244 YLKLTDEGVA---------------------------------ARDEKVLRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 VGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 304
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RY + G V +VLI D DVHQ
Sbjct: 137 AVISRYFLESGRVSRVLIFDCDVHQ 161
>gi|16127878|ref|NP_422442.1| histone deacetylase [Caulobacter crescentus CB15]
gi|221236699|ref|YP_002519136.1| deacetylase [Caulobacter crescentus NA1000]
gi|13425404|gb|AAK25610.1| histone deacetylase family protein [Caulobacter crescentus CB15]
gi|220965872|gb|ACL97228.1| deacetylase [Caulobacter crescentus NA1000]
Length = 304
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 91/206 (44%), Gaps = 60/206 (29%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
+AL+++ L + GDGTA IF+ DP+VFTFSMH +N+P RK SDLD+ + GTDD
Sbjct: 153 KALVVD--LDVHQGDGTARIFENDPSVFTFSMHAEKNFPHRKASSDLDIELSDGTDDG-- 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+L++ I LL P+I F+ AG D L
Sbjct: 209 --------AYLAKL------EAILPALLISVRPDIVFFN---------AGVDPHADDKLG 245
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ R+ + YVL +S+ IPV
Sbjct: 246 RLALTDEGLARR---------------------------------EAYVLGACLSSEIPV 272
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAA 611
V GGGY ADID+LA R I+HR A
Sbjct: 273 VGVIGGGYDADIDRLAARHAILHRTA 298
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LP +L +PD+V ++AGVDPH D+LG+L LTD G
Sbjct: 208 GAYLAKLEAILPALLISVRPDIVFFNAGVDPHADDKLGRLALTDEG 253
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+AAR L+ G + K L+VDLDVHQ
Sbjct: 132 FCVFNDVAVAARRLLAEGAIGKALVVDLDVHQ 163
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
PI+H + +P HRFPM KFS+ L ++V P+ + L H+++
Sbjct: 6 PIVHHPAFRAEMPAGHRFPMDKFSRLAALLEAERVA-GPDGFARPEPVDVETLCLAHSED 64
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
YV + G + +A+R R
Sbjct: 65 YVRGVIELSLPPDIVRRIGMPNTESVATRARA 96
>gi|326796258|ref|YP_004314078.1| histone deacetylase superfamily protein [Marinomonas mediterranea
MMB-1]
gi|326547022|gb|ADZ92242.1| histone deacetylase superfamily [Marinomonas mediterranea MMB-1]
Length = 307
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 100/249 (40%), Gaps = 43/249 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+P + Y P NHRFPMSKF L ++ S+ EP +S + H K
Sbjct: 2 IPFVFHPNYSIPFPSNHRFPMSKFRLLAEQLSELGIL-TSENCFEPSPLSLTALMRAHDK 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYL------ 135
YV +F G+ T+KE+K G WS L R + + H +A +L
Sbjct: 61 HYVQRFVRGQLTQKEEKEIGLPWSEWLVERTLRAVSGTILTAELALDHGLACHLAGGTHH 120
Query: 136 --PFFLQRRPVFFDIAAVLADLICIAVY----------------LTFFLQRR---PVFFD 174
P +F D+A DLI + + FF R PV +
Sbjct: 121 AHPSHGAGFCIFNDLAVASIDLIHRGLAKKVMILDCDVHQGDGTVAFFTNRDDVIPVSWH 180
Query: 175 IAAVLADLIHFMVGINTQPVSG-----YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
H G+N G Y + LKE LP +L ++ PD V YDAG D H D
Sbjct: 181 CDENYPVDKH-QGGVNIALPKGADGKCYLSVLKETLPDLLLRYSPDFVFYDAGADVHIDD 239
Query: 230 ELGKLNLTD 238
LG LNLTD
Sbjct: 240 RLGFLNLTD 248
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 73/229 (31%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
+ + L W +L +R+ + + I L L + THHA P HGAGFC+ ND+
Sbjct: 76 EKEIGLPWSEWLVERTLRAVSGTILTAELALDHGLACHLAGGTHHAHPSHGAGFCIFNDL 135
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRS----------IPVPS---------------- 556
A+A+ LI G+ +KV+I+D DVHQ + IPV
Sbjct: 136 AVASIDLIHRGLAKKVMILDCDVHQGDGTVAFFTNRDDVIPVSWHCDENYPVDKHQGGVN 195
Query: 557 ------------LTVLSSCVPGLYMR---------------------------------D 571
L+VL +P L +R D
Sbjct: 196 IALPKGADGKCYLSVLKETLPDLLLRYSPDFVFYDAGADVHIDDRLGFLNLTDDDVRMRD 255
Query: 572 YYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
YVL+T + +PVA V GGGY ++AQR +I+H+ A + ER L
Sbjct: 256 RYVLETCLDLSLPVACVIGGGYDRQEYKVAQRHSILHQVANEIGNERRL 304
>gi|302188367|ref|ZP_07265040.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
syringae 642]
Length = 305
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYIRRYLDGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQRRPVF-FD--------IAAVLADL------- 182
+D A + DL I+ YL + V FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLHSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPLYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 75/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL L P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPLYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGLAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL +S IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLSRDIPVMGVIGGGYSKDRH 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL+ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLHSGRVDKVLIFDCDVHQ 161
>gi|66047522|ref|YP_237363.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
syringae B728a]
gi|422671771|ref|ZP_16731136.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
aceris str. M302273]
gi|63258229|gb|AAY39325.1| Histone deacetylase superfamily [Pseudomonas syringae pv. syringae
B728a]
gi|330969510|gb|EGH69576.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
aceris str. M302273]
Length = 305
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPLYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 75/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL L P++ + AG + D AL L G+
Sbjct: 213 -------DDLLNYLLPLYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGLAN-- 254
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
RD VL +S IPV V GGGY D
Sbjct: 255 -------------------------------RDEAVLRHCLSRDIPVMGVIGGGYSKDRL 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|428201494|ref|YP_007080083.1| deacetylase [Pleurocapsa sp. PCC 7327]
gi|427978926|gb|AFY76526.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pleurocapsa sp. PCC 7327]
Length = 308
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF DP+VFTFSMHC N+P KQ SDLDV + VG DD G +
Sbjct: 152 VLIVDLDVHQGDGTACIFQDDPSVFTFSMHCEANFPNNKQKSDLDVPLPVGLDDDGYLHI 211
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+LS +++ + L L D ++ ++
Sbjct: 212 ---LAKYLSDVLSQVQPD------LVLYDAGVDTHASDR--------------------- 241
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ K+ + DL +++ + VL++C ++AG PVA V
Sbjct: 242 ------LGKLALTDLGIYRR-------EMQVLTTC---------------LAAGCPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ L R +++HRAA +Y++
Sbjct: 274 IGGGYADDLQGLVARHSLLHRAAKVIYQQ 302
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R+ I L L + THHAFP +G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPALANRTCVAVGGTILTAQLALQYGLACNTAGGTHHAFPGYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R L + G+V+KVLIVDLDVHQ
Sbjct: 133 FNDLAIATRVLQQLGLVKKVLIVDLDVHQ 161
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ Y LP HRFPMSKF + L+ D I + + P+ S + ELVH
Sbjct: 3 LPIVYHPDYIAPLPEGHRFPMSKFKLLYELLLADG-IAQLDCVYRPEVPSRELIELVHLP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
EYV + G K Q+ G WS LA+R
Sbjct: 62 EYVRAYCEGTLDPKAQRRIGLPWSPALANR 91
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L ++L +L+Q +PDLV+YDAGVD H D LGKL LTD G
Sbjct: 207 GYLHILAKYLSDVLSQVQPDLVLYDAGVDTHASDRLGKLALTDLG 251
>gi|421141919|ref|ZP_15601898.1| Histone deacetylase superfamily protein [Pseudomonas fluorescens
BBc6R8]
gi|404506939|gb|EKA20930.1| Histone deacetylase superfamily protein [Pseudomonas fluorescens
BBc6R8]
Length = 306
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++LV + + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLV-ESGLTRDSQLLRPELCPAEILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDQG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDQGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VVGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|422660331|ref|ZP_16722745.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331018938|gb|EGH98994.1| histone deacetylase family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 305
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y +HRFPM KF +YLV D + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPAFAQDHRFPMDKFRLLRDYLV-DSGLTRDVQLMRPELCPVDILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKARSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDRG 251
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 76/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKARSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDRGLANRDEAVLRHCLGRDIPVMGVIGGGYSKDRH 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVGKVLIFDCDVHQ 161
>gi|28871794|ref|NP_794413.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855046|gb|AAO58108.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 305
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y +HRFPM KF +YLV D + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPAFAQDHRFPMDKFRLLRDYLV-DSGLTRDVQLMRPELCPVDILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDRG 251
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 76/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDRGLANRDEAVLRHCLGRDIPVMAVIGGGYSKDRH 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVGKVLIFDCDVHQ 161
>gi|213966783|ref|ZP_03394934.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
T1]
gi|301383292|ref|ZP_07231710.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
Max13]
gi|302062469|ref|ZP_07254010.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
K40]
gi|302133451|ref|ZP_07259441.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213928633|gb|EEB62177.1| histone deacetylase family protein [Pseudomonas syringae pv. tomato
T1]
Length = 305
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y +HRFPM KF +YLV D + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPAFAQDHRFPMDKFRLLRDYLV-DSGLTRDVQLMRPELCPVDILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + TH +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVGKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDRG 251
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 76/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDRGLANRDEAVLRHCLGRDIPVMGVIGGGYSKDRH 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L+ + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALTHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVGKVLIFDCDVHQ 161
>gi|440683109|ref|YP_007157904.1| Histone deacetylase [Anabaena cylindrica PCC 7122]
gi|428680228|gb|AFZ58994.1| Histone deacetylase [Anabaena cylindrica PCC 7122]
Length = 305
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 93/209 (44%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF D +VFTFSMHC N+P KQ SDLD+ + +G +D
Sbjct: 152 ILIVDLDVHQGDGTAFIFHNDNSVFTFSMHCEDNFPGTKQKSDLDIPLPLGMED---EAY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T +L +++ + +F D ++ TH +ND L
Sbjct: 209 LQTLANYLPDLLSQIKPDLVFY------DAGVD---TH------------IND-KLGKLA 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L GI R+ + VL++CV SAG PVA V
Sbjct: 247 LTDTGIFRR------------------EMQVLNTCV---------------SAGYPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ L R +++HRAA+ Y +
Sbjct: 274 IGGGYAEDMKSLVWRHSLLHRAASQTYHQ 302
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 102/257 (39%), Gaps = 55/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ Y LP HRFPMSKFS+ L+ D+V S+Q P++ + ELVHT
Sbjct: 3 LPIVYHLDYIAPLPLGHRFPMSKFSQLHELLLADRVA-HSEQFHIPERPQTELIELVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV-------- 133
YV + G K Q+ G WS L +R + H +A
Sbjct: 62 NYVQAYCQGTLESKAQRRIGLPWSPALVNRTCVALGGTILTAQLALNHGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQP 193
P + +F D+A + V L + + D+ D F+ N
Sbjct: 122 AFPDYGSGFCIFNDLA------VASRVIQKLGLAKNILIVDLDVHQGDGTAFIFH-NDNS 174
Query: 194 VSGYQATLKEHLPG----------------------ILAQFKP--------DLVIYDAGV 223
V + +++ PG LA + P DLV YDAGV
Sbjct: 175 VFTFSMHCEDNFPGTKQKSDLDIPLPLGMEDEAYLQTLANYLPDLLSQIKPDLVFYDAGV 234
Query: 224 DPHQHDELGKLNLTDHG 240
D H +D+LGKL LTD G
Sbjct: 235 DTHINDKLGKLALTDTG 251
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
+ R + L W L R+ I L L+ + THHAFPD+G+GFC+
Sbjct: 73 ESKAQRRIGLPWSPALVNRTCVALGGTILTAQLALNHGLACNTAGGTHHAFPDYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R + + G+ + +LIVDLDVHQ
Sbjct: 133 FNDLAVASRVIQKLGLAKNILIVDLDVHQ 161
>gi|422616032|ref|ZP_16684739.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
japonica str. M301072]
gi|440722310|ref|ZP_20902692.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34876]
gi|440726023|ref|ZP_20906281.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34881]
gi|443642248|ref|ZP_21126098.1| Histone deacetylase family protein [Pseudomonas syringae pv.
syringae B64]
gi|330895528|gb|EGH27838.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
japonica str. M301072]
gi|440361499|gb|ELP98726.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34876]
gi|440367406|gb|ELQ04469.1| histone deacetylase superfamily protein [Pseudomonas syringae
BRIP34881]
gi|443282265|gb|ELS41270.1| Histone deacetylase family protein [Pseudomonas syringae pv.
syringae B64]
Length = 305
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADL------- 182
+D A +AV + LQ + + FD A +LAD
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L +KPDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLNVVDDLLNYLLPFYKPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDQG 251
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL +S IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|422629205|ref|ZP_16694410.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330938165|gb|EGH41867.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 305
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPDFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD--------IAAVLADLIHFM-VG 188
+D A +AV + LQ + + FD A +LAD + V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAITVS 179
Query: 189 INTQ----------------PVS----GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
++ + P+ Y + + L +L +KPDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPIGMGDVDYLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDQG 251
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 76/202 (37%), Gaps = 58/202 (28%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA I T S+HC +N+P RK SD D+ + +G D V
Sbjct: 162 GDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPIGMGDVDYLNVV--------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +LL P++ + AG
Sbjct: 213 -------DDLLNYLLPFYKPDLVLYD---------AG----------------------- 233
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+DVH+ +L L GL RD VL +S IPV V GGGY D
Sbjct: 234 ----VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKDRQ 283
Query: 599 QLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 284 ALARRHGILHHSAQRVWNDMGL 305
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ++YL++ G V KVLI D DVHQ
Sbjct: 137 AVISQYLLQSGRVDKVLIFDCDVHQ 161
>gi|388466851|ref|ZP_10141061.1| histone deacetylase family protein [Pseudomonas synxantha BG33R]
gi|388010431|gb|EIK71618.1| histone deacetylase family protein [Pseudomonas synxantha BG33R]
Length = 306
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + QL+ PQ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTQDSQLLRPQLCPADILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISRYLLASGRVNRVLIFDCDVHQGDGTARILHDTPEAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDAG 251
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDAGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLASGRVNRVLIFDCDVHQ 161
>gi|392310191|ref|ZP_10272725.1| histone deacetylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 302
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 46/253 (18%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LP+++ Y + P HRF MSKF+ ++Y+ + +I + L +P+ + S ELVH
Sbjct: 6 NLPLVYHPNYSFSFDPKHRFVMSKFANLYHYVQQQGLI--TNNLYQPELGAPSHLELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
+ Y+ ++ + ++K + G WS L +R T P+ T H IA +L
Sbjct: 64 ESYLWDLWHNQLSDKVMRRIGLPWSEALMARTFTAPLGTLKTAELALEHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQRRPV----FFDIAAVLADLIHFM---------- 186
+D + + +A T ++ + V FD+ D M
Sbjct: 124 H--AHYDFGSGFCMVNDLAFTATTLVKNKKVNNVLIFDLDVHQGDGTAAMLKHDPYVFTC 181
Query: 187 ------------------VGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+G+ N + Y +K L G+++ PDLV+YDAGVD +
Sbjct: 182 SVHCEKNFPFRKHDSDLDIGLANNLSDTRYLDIVKNTLEGLISDLNPDLVLYDAGVDVWE 241
Query: 228 HDELGKLNLTDHG 240
HD LGKL++T G
Sbjct: 242 HDGLGKLDITWQG 254
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 398 TSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
T+ +K+ ++ L + GDGTA + DP VFT S+HC +N+PFRK SDLD+ +
Sbjct: 144 TTLVKNKKVNNVLIFDLDVHQGDGTAAMLKHDPYVFTCSVHCEKNFPFRKHDSDLDIGL 202
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A A L+++ V VLI DLDVHQ
Sbjct: 121 GTHHAHYDFGSGFCMVNDLAFTATTLVKNKKVNNVLIFDLDVHQ 164
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 28/42 (66%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
GL RD VL T +AGIPVATV GGGY D +LAQR I+
Sbjct: 254 GLEKRDALVLSTCQNAGIPVATVIGGGYDRDHKRLAQRHAIV 295
>gi|167035768|ref|YP_001670999.1| histone deacetylase superfamily protein [Pseudomonas putida GB-1]
gi|166862256|gb|ABZ00664.1| histone deacetylase superfamily [Pseudomonas putida GB-1]
Length = 304
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 111/269 (41%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTTDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 62 SYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLAAGRVHRVLIFDCDVHQGDGTARILHDTPEAITV 178
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRD 267
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLAAGRVHRVLIFDCDVHQ 161
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 66/213 (30%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTA 207
Query: 465 NRTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
V AL ++ L Q + + G+ ++++ D G+ + D
Sbjct: 208 YLKVVDDALNYLLPLYQPDLVLYDAGV----------DVHK--------DDALGYLQLTD 249
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
+AAR D VL +
Sbjct: 250 AGVAAR-------------------------------------------DEAVLRHCLGR 266
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHV 614
IPV V GGGY D LA+R I+H +A V
Sbjct: 267 DIPVVGVIGGGYSKDRAALAKRHGILHHSAARV 299
>gi|325271806|ref|ZP_08138273.1| histone deacetylase superfamily protein [Pseudomonas sp. TJI-51]
gi|324103053|gb|EGC00433.1| histone deacetylase superfamily protein [Pseudomonas sp. TJI-51]
Length = 304
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 113/269 (42%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLV-DSGLTTDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ NG+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 DYIARYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAELALQHGVACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + +R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVQRVLIFDCDVHQGDGTARILHDTPEAITV 178
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKANSDWDIPLPRGMGDTAYLNVVDDTLNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRD 267
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAELALQHGVACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V++VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVQRVLIFDCDVHQ 161
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 73/209 (34%), Gaps = 60/209 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEQNFPARKANSDWDIPLPRGMGDTAY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LNVV----------------DDTLNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD VL + I V
Sbjct: 244 YLQLTDAGVA---------------------------------ARDEAVLRHCLGRDIAV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V GGGY D LA+R I+H +A V
Sbjct: 271 MGVIGGGYSKDRVALAKRHGILHHSAARV 299
>gi|421615856|ref|ZP_16056875.1| histone deacetylase family protein [Pseudomonas stutzeri KOS6]
gi|409782038|gb|EKN61605.1| histone deacetylase family protein [Pseudomonas stutzeri KOS6]
Length = 306
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ + Y LPP HRFPM KF ++LV + + L+ PQ S I L H +
Sbjct: 3 LPLVFHDDYSPPLPPGHRFPMEKFRLLRDHLVALGMTTDAA-LLRPQMCSRDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ E + G WS LA R + + H +A +L
Sbjct: 62 DYVERYCSGEMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
D A+ + DL IA+YL + R + FD A +L ++
Sbjct: 122 --AHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENVPDAVTVS 179
Query: 183 IHFMVGINTQPV--------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H T+ Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKAHSDWDIPLPPGMDDDAYLKVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+LTD G SA + G D
Sbjct: 240 DALGLLSLTDAGLAARDSAVLDHCLGRD 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VIALYLLESGRVGRVLIFDCDVHQ 161
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 76/207 (36%), Gaps = 64/207 (30%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV---ALTWV 473
+ GDGTA I + P T S+HC +N+P RK SD D+ + G DD V L ++
Sbjct: 160 HQGDGTARILENVPDAVTVSLHCEKNFPTRKAHSDWDIPLPPGMDDDAYLKVVHDTLNYL 219
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+ Q + + G+ +++R D G + D LAA
Sbjct: 220 LPIYQPDLVLYDAGV----------DVHR--------DDALGLLSLTDAGLAA------- 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
RD VLD + IP+ + GGGY
Sbjct: 255 ------------------------------------RDSAVLDHCLGRDIPLVGLIGGGY 278
Query: 594 CADIDQLAQRQTIIHRAATHVYKERGL 620
D LA+R +H +A ++ GL
Sbjct: 279 DKDRALLARRHATLHVSAAAAWQRHGL 305
>gi|408479141|ref|ZP_11185360.1| putative histone deacetylase family protein [Pseudomonas sp. R81]
Length = 306
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++LV D + + QL+ PQ I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTEDSQLLRPQLCPPEILALAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 GYIERYMGGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEQALDHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDEG 251
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEQALDHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|452749112|ref|ZP_21948882.1| histone deacetylase family protein [Pseudomonas stutzeri NF13]
gi|452006938|gb|EMD99200.1| histone deacetylase family protein [Pseudomonas stutzeri NF13]
Length = 306
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 113/268 (42%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ + Y LPP HRFPM KF ++LV + ++ L+ P S I L H +
Sbjct: 3 LPLVFHDDYSPPLPPGHRFPMEKFRLLRDHLVALGLTTEAA-LLRPALCSHDILTLAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
YV ++ +G E + G WS LA R + + H +A +L
Sbjct: 62 NYVERYCSGAMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD-----------IAAVLADLI--- 183
D A+ + DL IA+YL + R + FD I +AD +
Sbjct: 122 --AHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENVADAVTVS 179
Query: 184 ------------HFMVGINTQPVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
H I P G A LK + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAHSDWDIPLPPGMGDDAYLKVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+LTD G SA + G D
Sbjct: 240 DALGLLSLTDAGLAARDSAVLDHCLGRD 267
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 441 RNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI 500
RNY + CS +G D+ R + L W L+QR+ + + L
Sbjct: 61 RNY-VERYCSGA-----MGRDEL--RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLA 112
Query: 501 NRFS--THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ THHA DH +GFC+ ND+A+ A YL+ G V +VLI D DVHQ
Sbjct: 113 CHLAGGTHHAHHDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQ 161
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 64/207 (30%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRTV--ALTWV 473
+ GDGTA I + T S+HC +N+P RK SD D+ + G DDA + V L ++
Sbjct: 160 HQGDGTARILENVADAVTVSLHCEKNFPARKAHSDWDIPLPPGMGDDAYLKVVHDTLNYL 219
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+ Q + + G+ +++R D G + D LAA
Sbjct: 220 LPIYQPDLVLYDAGV----------DVHR--------DDALGLLSLTDAGLAA------- 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
RD VLD + IPV + GGGY
Sbjct: 255 ------------------------------------RDSAVLDHCLGRDIPVVGLIGGGY 278
Query: 594 CADIDQLAQRQTIIHRAATHVYKERGL 620
D LA+R +H +A ++ GL
Sbjct: 279 DKDRALLARRHATLHVSAAAAWQRHGL 305
>gi|427735530|ref|YP_007055074.1| deacetylase [Rivularia sp. PCC 7116]
gi|427370571|gb|AFY54527.1| deacetylase, histone deacetylase/acetoin utilization protein
[Rivularia sp. PCC 7116]
Length = 305
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 95/213 (44%), Gaps = 60/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D +VFTFSMHC N+P RKQ SDLDV + G DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDDSVFTFSMHCEVNFPGRKQKSDLDVPLPEGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A +L ++ + + LF + DP I L
Sbjct: 212 LA----KYLPDLLVDVKPD-LVLFDAGV-DPHIGD--------------------KLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L GI R+ + VLS+CV AG PVA
Sbjct: 246 ALTDTGIYRR------------------EMQVLSTCV---------------GAGYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D+ L R +++HRAA+ V++ GL
Sbjct: 273 VIGGGYADDMKSLVWRHSLLHRAASEVFRLFGL 305
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 108/260 (41%), Gaps = 57/260 (21%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LPII+ Y LP HRFPM KF + L+ D V D +Q P++ ++ ELVH
Sbjct: 1 MSLPIIYHPDYVTPLPDAHRFPMPKFRLLYELLLSDGVADL-QQFHIPKRPNQEAIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYL------------- 135
TKE+V+ + NG K Q+ G WS L +R T V ++A L
Sbjct: 60 TKEFVNGYLNGTLDTKAQRRIGLPWSPQLVNRTCT-AVGGTILAAKLALSKGLACNTAGG 118
Query: 136 -----PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGIN 190
P + +F D A I V L ++ + D+ D F+ +
Sbjct: 119 THHAFPSYGSGFCIFNDFA------IATRVIQKLNLAQKILIVDLDVHQGDGTAFIFQ-D 171
Query: 191 TQPVSGYQATLKEHLPG----------------------ILAQFKPD--------LVIYD 220
V + + + PG LA++ PD LV++D
Sbjct: 172 DDSVFTFSMHCEVNFPGRKQKSDLDVPLPEGMEDDAYLQTLAKYLPDLLVDVKPDLVLFD 231
Query: 221 AGVDPHQHDELGKLNLTDHG 240
AGVDPH D+LGKL LTD G
Sbjct: 232 AGVDPHIGDKLGKLALTDTG 251
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCL 518
D R + L W L R+ I L LS THHAFP +G+GFC+
Sbjct: 73 DTKAQRRIGLPWSPQLVNRTCTAVGGTILAAKLALSKGLACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+A R + + + +K+LIVDLDVHQ
Sbjct: 133 FNDFAIATRVIQKLNLAQKILIVDLDVHQ 161
>gi|308048872|ref|YP_003912438.1| histone deacetylase [Ferrimonas balearica DSM 9799]
gi|307631062|gb|ADN75364.1| Histone deacetylase [Ferrimonas balearica DSM 9799]
Length = 303
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 106/241 (43%), Gaps = 47/241 (19%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP NHRFP+ K+ + L+ V+ + ++L +P +S VH +YV +F G
Sbjct: 15 LPANHRFPIHKYRLLHDALLAQGVL-QPERLHQPVPLSLDQVTQVHCPDYVQRFAQGTLD 73
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF-FLQRRPVFFDIAAVL 152
K Q+ GF WS L +R T T H IA +L + F V
Sbjct: 74 RKAQRRLGFPWSPPLVARTLTACGGTLRAAELALEHGIACHLSGGYHHAHRDFGSGFCVF 133
Query: 153 ADLICIAVYLTFFLQRRPV----FFDI-------AAVLA----DLI-------------- 183
DL+ A LQR+ V FD +A L D+I
Sbjct: 134 NDLVLAA---RLLLQRQAVSRVLIFDCDVHQGDGSAALCQDDPDIITCSLHCERNFPARK 190
Query: 184 ---HFMVGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDH 239
H V + N + Y ATL LP +L ++PDLVIYDAGVD HQ D LG L+L+DH
Sbjct: 191 ARSHVDVPLENDLDDAAYLATLDTVLPWLLNLYQPDLVIYDAGVDVHQDDALGYLSLSDH 250
Query: 240 G 240
G
Sbjct: 251 G 251
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 84/213 (39%), Gaps = 60/213 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDG+A + DP + T S+HC RN+P RK S +DV ++ DDA
Sbjct: 151 RVLIFDCDV--HQGDGSAALCQDDPDIITCSLHCERNFPARKARSHVDVPLENDLDDAAY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
T + +LL L P++ + AG
Sbjct: 209 LATLDT----------------VLPWLLNLYQPDLVIYD---------AG---------- 233
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
+DVHQ +L LS GLY RD+ VL GIPV
Sbjct: 234 -----------------VDVHQDD------ALGYLSLSDHGLYQRDHAVLSACQQRGIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
A V GGGY D L R + + AA + +R
Sbjct: 271 AAVIGGGYAKDHADLVPRHSQLFFAARDLLSQR 303
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFC+ ND+ LAAR L++ V +VLI D DVHQ
Sbjct: 120 HHAHRDFGSGFCVFNDLVLAARLLLQRQAVSRVLIFDCDVHQ 161
>gi|77461139|ref|YP_350646.1| histone deacetylase superfamily protein [Pseudomonas fluorescens
Pf0-1]
gi|77385142|gb|ABA76655.1| putative histone deacetylase family protein [Pseudomonas
fluorescens Pf0-1]
Length = 306
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + + L+ P+ I L H +
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDEDLLRPELCPADILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 SYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A +A+ + LQ R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQGDGTARILHNTPEAITVS 179
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDEG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 78/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHNTPEAITVSLHCEKNFPARKAESDWDIPLPNGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLQLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 VGVIGGGYSKDRHALARRHGILHHSAQRVWQSSG 304
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V +VLI D DVHQ
Sbjct: 137 AIISHYLLQSGRVNRVLIFDCDVHQ 161
>gi|295691473|ref|YP_003595166.1| histone deacetylase [Caulobacter segnis ATCC 21756]
gi|295433376|gb|ADG12548.1| Histone deacetylase [Caulobacter segnis ATCC 21756]
Length = 304
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 88/208 (42%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF+ DP+VFTFSMH +N+P RK SDLDV + G D
Sbjct: 154 VLVVDLDVHQGDGTARIFEDDPSVFTFSMHAEKNFPHRKATSDLDVELADGMGDE----- 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L + +E I LL P+I F+ AG D L
Sbjct: 209 -----DYLGKLAE------ILPALLSSVRPDIVFFN---------AGVDPHADDKLGRLS 248
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R R+ YVL ++ IP+ V
Sbjct: 249 LTDEGLGR---------------------------------REAYVLGACLALEIPLVGV 275
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY ADID+LA R I+HR A +Y
Sbjct: 276 IGGGYDADIDRLAARHAILHRTAKSLYS 303
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA + GAGFC+ ND+A+AAR L G V +VL+VDLDVHQ
Sbjct: 120 GSHHASAESGAGFCVFNDVAVAARRLQAEGRVGQVLVVDLDVHQ 163
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP +L+ +PD+V ++AGVDPH D+LG+L+LTD G
Sbjct: 210 YLGKLAEILPALLSSVRPDIVFFNAGVDPHADDKLGRLSLTDEG 253
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 31/268 (11%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
PI+H + +P HRFPM KFS+ L + V + P+ + L H ++
Sbjct: 6 PIVHHPAFRAEMPAGHRFPMDKFSRLAAVLEAEGV-PGADGFARPEPVDVETLRLAHNED 64
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIA-- 149
YV + + G + +A+R R T ++A L R + + A
Sbjct: 65 YVRGVIELSLPPEVVRRIGLPNTESVATRARAATGGT-LLAARLAL---ERGIACNTAGG 120
Query: 150 -----AVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ-------PVSGY 197
A C+ + +R + VL + G T V +
Sbjct: 121 SHHASAESGAGFCVFNDVAVAARRLQAEGRVGQVLVVDLDVHQGDGTARIFEDDPSVFTF 180
Query: 198 QATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---ISSEAG 254
+++ P A D+ + D D D LGK L + + SS R + AG
Sbjct: 181 SMHAEKNFPHRKATSDLDVELADGMGD---EDYLGK--LAEILPALLSSVRPDIVFFNAG 235
Query: 255 VDPHQHDELGKLNLTDHGV----KYILN 278
VDPH D+LG+L+LTD G+ Y+L
Sbjct: 236 VDPHADDKLGRLSLTDEGLGRREAYVLG 263
>gi|428207541|ref|YP_007091894.1| histone deacetylase [Chroococcidiopsis thermalis PCC 7203]
gi|428009462|gb|AFY88025.1| Histone deacetylase [Chroococcidiopsis thermalis PCC 7203]
Length = 305
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 91/212 (42%), Gaps = 64/212 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
++ + L + GDGTAFIF DP+VFTFSMHC N+P KQ SDLDV + G DD +T
Sbjct: 152 VLIVDLDVHQGDGTAFIFQNDPSVFTFSMHCEINFPGTKQKSDLDVPLPEGMEDDEYLQT 211
Query: 468 VALTWVTFLS--QRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LS Q + + G+ DP I L
Sbjct: 212 LAQYLPDLLSRIQPDLVLYDAGV--------DPHIGD--------------------RLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ R+ + VLS+CV +AG PV
Sbjct: 244 KLALTNTGLFRR------------------DMQVLSTCV---------------AAGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A V GGGY D+ L R +++HRAA+ V+ +
Sbjct: 271 ACVIGGGYAEDMTSLVYRHSLVHRAASEVFHQ 302
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 104/256 (40%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP HRFPM KF + L+ D V +Q P++ ++ ELVH
Sbjct: 3 LPLVYHPDYVVPLPDTHRFPMPKFQLLYELLIADGVA-YPEQFQIPERPPQAWIELVHLP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---DPVPTHVIAV-------------- 133
EYV + G K Q+ G WS LA+R V T +A+
Sbjct: 62 EYVQAYCTGTLDAKAQRRIGLPWSPALANRTCVAVGGTVLTAKLALECGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAA---VLADLICIAVYL------------TFFLQRRPVFFDIAAV 178
P + +F D+A VL +L + L F Q P F +
Sbjct: 122 AFPSYGSGFCIFNDLAIATRVLQELNLVRKVLIVDLDVHQGDGTAFIFQNDPSVFTFS-- 179
Query: 179 LADLIHFMVGI-NTQPVSGYQATLKEHLPG-----ILAQFKP--------DLVIYDAGVD 224
+H + T+ S L E + LAQ+ P DLV+YDAGVD
Sbjct: 180 ----MHCEINFPGTKQKSDLDVPLPEGMEDDEYLQTLAQYLPDLLSRIQPDLVLYDAGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
PH D LGKL LT+ G
Sbjct: 236 PHIGDRLGKLALTNTG 251
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAG 515
GT DA R + L W L+ R+ + L L + THHAFP +G+G
Sbjct: 70 GTLDAKAQRRIGLPWSPALANRTCVAVGGTVLTAKLALECGLACNTAGGTHHAFPSYGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+A R L +VRKVLIVDLDVHQ
Sbjct: 130 FCIFNDLAIATRVLQELNLVRKVLIVDLDVHQ 161
>gi|434393911|ref|YP_007128858.1| Histone deacetylase [Gloeocapsa sp. PCC 7428]
gi|428265752|gb|AFZ31698.1| Histone deacetylase [Gloeocapsa sp. PCC 7428]
Length = 304
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 94/209 (44%), Gaps = 60/209 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
++ + L + GDGTA+IF +D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 VLIVDLDVHQGDGTAYIFQEDASVFTFSMHCEVNFPGTKQKSDLDVPLPVGMEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A LS H PD ++ D +
Sbjct: 212 LANYLPDLLS-----------------------------HVKPD-----LVLYDAGVDPH 237
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
R G K+ + D +++ + VLS+CV S G PVA
Sbjct: 238 AGDRLG---KLALTDAGIYRR-------EMQVLSTCV---------------SRGYPVAC 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYK 616
V GGGY D + L R +++HRAA+ VY+
Sbjct: 273 VIGGGYADDFNSLVYRHSLLHRAASEVYR 301
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 102/253 (40%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y LP HRFPM KFS+ + L+ D V + Q P Q LVHT
Sbjct: 3 LPIIYHPDYVAPLPEGHRFPMPKFSRLYELLIADGVAHPA-QFHTPVQPPSEWITLVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAV-------- 133
+Y + G K Q+ G WS+ L R + +H +A
Sbjct: 62 DYFQAYCTGTLDPKAQRRIGLPWSSALVKRTCIAVGGTILTAKLALSHGLACNTAGGTHH 121
Query: 134 YLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRP------VFFDIAAVLADLIH 184
P + +F D+A VL L + L L +F + A+V +H
Sbjct: 122 AFPSYGSGFCIFNDLAIAARVLQQLQLVKKVLIVDLDVHQGDGTAYIFQEDASVFTFSMH 181
Query: 185 FMVGINTQPVSGYQATLKEHLP---------GILAQFKP--------DLVIYDAGVDPHQ 227
V P + ++ L LP LA + P DLV+YDAGVDPH
Sbjct: 182 CEVNF---PGTKQKSDLDVPLPVGMEDDAYLQTLANYLPDLLSHVKPDLVLYDAGVDPHA 238
Query: 228 HDELGKLNLTDHG 240
D LGKL LTD G
Sbjct: 239 GDRLGKLALTDAG 251
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W + L +R+ I L LS + THHAFP +G+GFC+
Sbjct: 73 DPKAQRRIGLPWSSALVKRTCIAVGGTILTAKLALSHGLACNTAGGTHHAFPSYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+AAR L + +V+KVLIVDLDVHQ
Sbjct: 133 FNDLAIAARVLQQLQLVKKVLIVDLDVHQ 161
>gi|431804581|ref|YP_007231484.1| histone deacetylase superfamily protein [Pseudomonas putida HB3267]
gi|430795346|gb|AGA75541.1| histone deacetylase superfamily protein [Pseudomonas putida HB3267]
Length = 304
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 106/269 (39%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++L+ D + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLI-DSGLTTDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + H IA +L
Sbjct: 62 SYIERYMNGDLSREDQRRLGLPWSEALARRTVRAVGGSLLSAEMALQHGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------ 182
P F + DL I+ YL + R + FD A +L D
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPDAITV 178
Query: 183 -IHFMVGINTQPVS--------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+H + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAQSDWDIPLPRGMGDMAYLKVVDDALNYLLPLYRPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRD 267
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLSAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 77/211 (36%), Gaps = 62/211 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEQNFPARKAQSDWDIPLPRGMGD-- 205
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMA 523
+ +L + + +LL L P++ + D G+ + D
Sbjct: 206 --------MAYLKVVDDALN------YLLPLYRPDLVLYDAGVDVHKDDALGYLQLTDAG 251
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
+AAR D VL + I
Sbjct: 252 VAAR-------------------------------------------DEAVLRHCLGRDI 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHV 614
PV V GGGY D LA+R I+H +A V
Sbjct: 269 PVVGVIGGGYSKDRAALARRHGILHHSAARV 299
>gi|395499064|ref|ZP_10430643.1| histone deacetylase family protein [Pseudomonas sp. PAMC 25886]
Length = 306
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++LV + + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLV-ESGLTRDSQLLRPELCPAEILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAESDWDIPLPMGMGDE---DYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDEG 251
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 78/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G D
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAESDWDIPLPMGMGDED 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VVGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|386827004|ref|ZP_10114111.1| deacetylase, histone deacetylase/acetoin utilization protein
[Beggiatoa alba B18LD]
gi|386427888|gb|EIJ41716.1| deacetylase, histone deacetylase/acetoin utilization protein
[Beggiatoa alba B18LD]
Length = 307
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 108/256 (42%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+ I +T+ + LP HRFPM K++ LV + +I + I P E + HT
Sbjct: 11 MDIFYTDIFPIPLPATHRFPMEKYALLRQQLVDNSIISPAYLQIPPAATLEQLI-YAHTP 69
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFL-- 139
+Y+ + F G+ TE+E K+ GF WS + R R T IAV L
Sbjct: 70 DYIQRVFAGELTEQEIKIIGFPWSTAMVERSRRSCGATIQACYSALKQGIAVSLAGGTHH 129
Query: 140 ------QRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFD--------IAAVLA---DL 182
Q VF D +AV A L+ I ++ ++ V D A +LA DL
Sbjct: 130 AYADHGQGYCVFND-SAVSARLLKITGWV-----KQVVIIDCDVHQGNGTAHILADDNDL 183
Query: 183 IHFMV-GINTQPVSG-----------------YQATLKEHLPGILAQFKPDLVIYDAGVD 224
F + G P Y L++ L + Q PDLVIY AG D
Sbjct: 184 FTFSIHGAKNFPFRKEKSNLDIELSDNTGDDVYLKALEQRLKAVFQQINPDLVIYLAGAD 243
Query: 225 PHQHDELGKLNLTDHG 240
P+Q+D LG+L LT G
Sbjct: 244 PYQNDRLGRLALTKAG 259
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG G+C+ ND A++AR L G V++V+I+D DVHQ
Sbjct: 126 GTHHAYADHGQGYCVFNDSAVSARLLKITGWVKQVVIIDCDVHQ 169
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ G+GTA I D +FTFS+H +N+PFRK+ S+LD+ + T D
Sbjct: 168 HQGNGTAHILADDNDLFTFSIHGAKNFPFRKEKSNLDIELSDNTGD 213
>gi|398980080|ref|ZP_10688815.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM25]
gi|398135039|gb|EJM24169.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM25]
Length = 306
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + + L+ P+ I L H +
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDEDLLRPELCPADILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A +A+ + LQ R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQGDGTARILHNTPEAITVS 179
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDEG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 78/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHNTPEAITVSLHCEKNFPARKAESDWDIPLPNGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLQLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 VGVIGGGYSKDRHALARRHGILHHSAQRVWQSSG 304
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V +VLI D DVHQ
Sbjct: 137 AIISHYLLQSGRVNRVLIFDCDVHQ 161
>gi|395797814|ref|ZP_10477102.1| histone deacetylase family protein [Pseudomonas sp. Ag1]
gi|395338182|gb|EJF70035.1| histone deacetylase family protein [Pseudomonas sp. Ag1]
Length = 306
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++LV + + + QL+ P+ I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLV-ESGLTRDSQLLRPELCPAEILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDQG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDQGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VVGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|229592755|ref|YP_002874874.1| putative histone deacetylase family protein [Pseudomonas
fluorescens SBW25]
gi|229364621|emb|CAY52526.1| putative histone deacetylase family protein [Pseudomonas
fluorescens SBW25]
Length = 306
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV D + + QL+ PQ I L H
Sbjct: 3 LPLIYHDDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTEDSQLLRPQLCPAQILALAHDT 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDAG 251
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDAGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|119510696|ref|ZP_01629824.1| histone deacetylase/AcuC/AphA family protein [Nodularia spumigena
CCY9414]
gi|119464650|gb|EAW45559.1| histone deacetylase/AcuC/AphA family protein [Nodularia spumigena
CCY9414]
Length = 305
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 90/212 (42%), Gaps = 64/212 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTA IF D +VFTFSMHC N+P KQ SDLDV + VG DDA +T
Sbjct: 152 ILIVDLDVHQGDGTAVIFQGDDSVFTFSMHCEVNFPGTKQTSDLDVPLTVGMEDDAYLQT 211
Query: 468 VALTWVTFLS--QRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LS Q + + G+ DP I A D G
Sbjct: 212 LANYLPDLLSHIQPDLVLYDAGV--------DPHIGDRLGKLALSDTG------------ 251
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
I + + VLS+CV +AG PV
Sbjct: 252 --------------------------IFLREMQVLSTCV---------------AAGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A V GGGY D+ L R +++HRAA+ VY +
Sbjct: 271 ACVIGGGYADDMKSLVWRHSLLHRAASQVYHQ 302
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LPII+ Y LPP HRFPMSKF K + L+ + V ++ Q P++ + ELVH
Sbjct: 1 MELPIIYHPDYIAPLPPGHRFPMSKFEKLYELLLAEGVA-QTAQFHTPKRPPPELIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
T EYV + G K Q+ G WS L +R
Sbjct: 60 TSEYVKAYCEGTLEPKAQRRIGLPWSPELVNR 91
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L R+ I + LS + THHAFP +G+GFC+ ND+
Sbjct: 77 QRRIGLPWSPELVNRTCVAVGGTILTAQMALSQGLACNTAGGTHHAFPSYGSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R L + G+V+ +LIVDLDVHQ
Sbjct: 137 AIACRVLQKLGLVQNILIVDLDVHQ 161
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +LP +L+ +PDLV+YDAGVDPH D LGKL L+D G
Sbjct: 208 YLQTLANYLPDLLSHIQPDLVLYDAGVDPHIGDRLGKLALSDTG 251
>gi|86604935|ref|YP_473698.1| histone deacetylase family protein [Synechococcus sp. JA-3-3Ab]
gi|86553477|gb|ABC98435.1| histone deacetylase family protein [Synechococcus sp. JA-3-3Ab]
Length = 305
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 89/209 (42%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA+IF +P VFTFSMHC N+P KQ SDLDV + VG +D
Sbjct: 152 VLIVDLDVHQGDGTAWIFRSEPRVFTFSMHCAANFPATKQASDLDVPLPVGLED---EAY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T +L ++R + L L D ++ L+ +AL+
Sbjct: 209 LQTLADYLPDLLAQVRPD------LVLYDAGVDPHRED-----------LLGKLALSDEG 251
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L R + VL +C + G PVA V
Sbjct: 252 LFRR-----------------------DMQVLDTC---------------LKRGYPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+ QL R +++HRAA VY++
Sbjct: 274 IGGGYGNDLAQLVYRHSLLHRAAGEVYRQ 302
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
R + L W L QR+ + + LR THHAFP +G+GFC+ ND+
Sbjct: 77 QRRIGLPWSPELVQRTCRAVGGTVLTAQLALRHGLACNTAGGTHHAFPAYGSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+AA+ L++ G+V+KVLIVDLDVHQ
Sbjct: 137 AIAAQVLLQQGLVQKVLIVDLDVHQ 161
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL ++LP +LAQ +PDLV+YDAGVDPH+ D LGKL L+D G
Sbjct: 206 EAYLQTLADYLPDLLAQVRPDLVLYDAGVDPHREDLLGKLALSDEG 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LPP HRFPM KF L+R+ VI + +Q+ +P+ + E VHT
Sbjct: 3 LPVVYHPDYSAPLPPGHRFPMPKFRLLHELLLREGVI-RPQQVHQPELPPLAWIESVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
EYV + G K Q+ G WS L R
Sbjct: 62 EYVRAYCEGSLEAKLQRRIGLPWSPELVQR 91
>gi|146281268|ref|YP_001171421.1| histone deacetylase family protein [Pseudomonas stutzeri A1501]
gi|145569473|gb|ABP78579.1| histone deacetylase family protein [Pseudomonas stutzeri A1501]
Length = 306
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 114/268 (42%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y LPP HRFPM KF ++LV + + L+ P I L H
Sbjct: 3 LPLVYHDDYSPPLPPGHRFPMEKFRLLRDHLVTLGMTTDAA-LLRPSLCRRDILTLAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ E + G WS LA R + + H +A +L
Sbjct: 62 DYVARYCSGEMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVY-LTFFLQRRPVFFD--------IAAVLADL------- 182
D A+ + DL IA+Y L L R + FD A +L ++
Sbjct: 122 --AHRDHASGFCIFNDLAVIALYLLESGLVGRVLIFDCDVHQGDGTARILENVPDAVTVS 179
Query: 183 -----------IHFMVGINTQPVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
H I P G +A L+ + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKAHSDWDIPLPPGMGDEAYLQVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+LTD G SA + G D
Sbjct: 240 DALGLLSLTDAGLAARDSAVLDHCLGRD 267
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G+V +VLI D DVHQ
Sbjct: 138 VIALYLLESGLVGRVLIFDCDVHQ 161
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + P T S+HC +N+P RK SD D+ + G D V
Sbjct: 160 HQGDGTARILENVPDAVTVSLHCEKNFPTRKAHSDWDIPLPPGMGDEAYLQVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL + P++ + AG + D AL
Sbjct: 213 ---------HDTLNYLLPIYQPDLVLYD---------AGVDVHRDDALG----------- 243
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+LS GL RD VLD + IPV + GGGY D
Sbjct: 244 ----------------------LLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYDKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R +H +A ++ GL
Sbjct: 282 RALLARRHATLHVSAHSAWQRHGL 305
>gi|427420410|ref|ZP_18910593.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 7375]
gi|425763123|gb|EKV03976.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 7375]
Length = 305
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 91/209 (43%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA+IF DP+VFTFSMHC N+P RKQ SDLDV +D GT+D
Sbjct: 153 VLVVDLDVHQGDGTAWIFRDDPSVFTFSMHCAVNFPGRKQTSDLDVPLDEGTEDD----- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L++ + + LL P++ + AG D L
Sbjct: 208 -----EYLAKLEAHLPD------LLAQVKPDLVLYD---------AGADPHRDDRLGKLA 247
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R+ VL +C Y PVA V
Sbjct: 248 LTDEGLYRR------------------DWYVLETCAKARY---------------PVACV 274
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D++ L R + ++RAA+ VY++
Sbjct: 275 IGGGYGKDMNALIYRHSYLYRAASEVYRK 303
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV 87
+ LP+I+ Y LP HRFPM KF + LVRD VI + +Q+ +P + ELV
Sbjct: 1 MTGLPVIYHPDYVTPLPAGHRFPMPKFQLLRDLLVRDGVISE-EQIYQPGRPPRDWLELV 59
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
H YV + +G K Q+ G WSA L R T
Sbjct: 60 HDSPYVQAYCDGGLDAKAQRRIGLPWSAELVRRTCT 95
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 457 DVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGA 514
D G D R + L W L +R+ I L L+ THHAFP +GA
Sbjct: 70 DGGLDAKAQRRIGLPWSAELVRRTCTAVGGTILTAKLALNQGLACNTAGGTHHAFPGYGA 129
Query: 515 GFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
GFC+ ND+A+A R L +++ VL+VDLDVHQ
Sbjct: 130 GFCIFNDIAIATRLLKAQNLLQTVLVVDLDVHQ 162
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 34/44 (77%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ HLP +LAQ KPDLV+YDAG DPH+ D LGKL LTD G
Sbjct: 209 YLAKLEAHLPDLLAQVKPDLVLYDAGADPHRDDRLGKLALTDEG 252
>gi|398845414|ref|ZP_10602449.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM84]
gi|398253577|gb|EJN38699.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM84]
Length = 304
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV D + + L+ P I L H +
Sbjct: 3 LPLIYHDDYSPEFPAEHRFPMDKFRLLHDHLV-DSGLTCDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMNGDLSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALRHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------ 182
P F + DL I+ YL + R + FD A +L D
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILQDTPDAITV 178
Query: 183 -IHFMVGINTQPV--------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+H + + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAHSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLQLTDEG 251
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEMALRHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 66/213 (30%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILQDTPDAITVSLHCEQNFPARKAHSDWDIPLPRGMGDTA 207
Query: 465 NRTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
V AL ++ L Q + + G+ ++++ D G+ + D
Sbjct: 208 YLKVVDDALNYLLPLYQPDLVLYDAGV----------DVHK--------DDALGYLQLTD 249
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
LAAR D V+ +
Sbjct: 250 EGLAAR-------------------------------------------DERVMRHCLGR 266
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHV 614
IPV V GGGY D + LA+R I+H A V
Sbjct: 267 DIPVVGVIGGGYSKDREALARRHGILHHTAAKV 299
>gi|339492852|ref|YP_004713145.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
gi|338800224|gb|AEJ04056.1| histone deacetylase family protein [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
Length = 306
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 115/268 (42%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y LPP HRFPM KF ++LV + + L+ P S I L H
Sbjct: 3 LPLVYHDDYSPPLPPGHRFPMEKFRLLRDHLVTLGMTTDAA-LLRPSLCSRDILTLAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ E + G WS LA R + + H +A +L
Sbjct: 62 DYVARYCSGEMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
D A+ + DL IA+YL + R + FD A +L ++
Sbjct: 122 --AHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENVPDAVTVS 179
Query: 183 -----------IHFMVGINTQPVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
H I P G +A L+ + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKAHSDWDIPLPPGMGDEAYLQVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+LTD G SA + G D
Sbjct: 240 DALGLLSLTDAGLAARDSAVLDHCLGRD 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 74/204 (36%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + P T S+HC +N+P RK SD D+ + G D V
Sbjct: 160 HQGDGTARILENVPDAVTVSLHCEKNFPTRKAHSDWDIPLPPGMGDEAYLQVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL + P++ + AG + D AL
Sbjct: 213 ---------HDTLNYLLPIYQPDLVLYD---------AGVDVHRDDALG----------- 243
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+LS GL RD VLD + IPV + GGGY D
Sbjct: 244 ----------------------LLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYDKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA R +H +A ++ GL
Sbjct: 282 RALLAHRHATLHVSAHSAWQRHGL 305
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VIALYLLESGRVGRVLIFDCDVHQ 161
>gi|398964631|ref|ZP_10680408.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM30]
gi|398148017|gb|EJM36705.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM30]
Length = 306
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H +
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPEICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 RYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +A+ + LQ R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQGDGTARILHDTPEAITVS 179
Query: 183 IHFMVGI--------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPNGMGDADYLQVVDDTLNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDAG 251
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 76/215 (35%), Gaps = 62/215 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEKNFPARKAESDWDIPLPNGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + D G+ + D +
Sbjct: 209 LQVV----------------DDTLNYLLPLYQPDLVLYDAGVDVHKDDALGYLQLTDAGV 252
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
AAR D V+ + IP
Sbjct: 253 AAR-------------------------------------------DESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VVGVIGGGYSKDRHALARRHGILHHSAQRVWTSHG 304
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V +VLI D DVHQ
Sbjct: 137 AIISHYLLQSGRVNRVLIFDCDVHQ 161
>gi|424925046|ref|ZP_18348407.1| Deacetylase [Pseudomonas fluorescens R124]
gi|404306206|gb|EJZ60168.1| Deacetylase [Pseudomonas fluorescens R124]
Length = 306
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H +
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPEICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 RYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +A+ + LQ R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQGDGTARILQDTPEAITVS 179
Query: 183 IHFMVGINTQPV--------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPKGMGDADYLQVVDDTLNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDEG 251
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 77/214 (35%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILQDTPEAITVSLHCEKNFPARKAESDWDIPLPKGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LQVV----------------DDTLNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLQLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V+ G
Sbjct: 271 VGVIGGGYSKDRHALARRHGILHHSAQRVWTSHG 304
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V +VLI D DVHQ
Sbjct: 137 AIISHYLLQSGRVNRVLIFDCDVHQ 161
>gi|384252722|gb|EIE26198.1| histone deacetylase [Coccomyxa subellipsoidea C-169]
Length = 332
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 80/183 (43%), Gaps = 71/183 (38%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ---------------- 547
THHAFPD G+GFC++ND+A+ A L+ V +VLI+DLDVHQ
Sbjct: 137 GTHHAFPDSGSGFCILNDLAVTAAVLLEEARVERVLILDLDVHQGDGTALMFQDEPRVFT 196
Query: 548 ---HTRS------------IPVPSLT---------------VLSSCVPGLYMRDYYV--- 574
H S +P+P T VLS P L + D V
Sbjct: 197 MSVHGESNFPARKQRSDLDVPLPDGTADDEYLRVLGEMLPPVLSCFQPDLVLYDAGVDPH 256
Query: 575 ----------------------LDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
LDT ++A IPVA GGGY D++ LA+R T++HRAA+
Sbjct: 257 KDDSLGKLALTDQGLLRRELQVLDTCLAADIPVAGYVGGGYSPDLNVLARRHTLLHRAAS 316
Query: 613 HVY 615
++
Sbjct: 317 EMW 319
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP +L+ F+PDLV+YDAGVDPH+ D LGKL LTD G
Sbjct: 227 YLRVLGEMLPPVLSCFQPDLVLYDAGVDPHKDDSLGKLALTDQG 270
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 27 RLVHLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
++ LP+++ Y LPP HRFPM + + + D ++ +L + + +
Sbjct: 19 KISGLPVVYHEAYSAPQLPPGHRFPMVRIC-SVPFYAADHLVHVPDELPTHETL-----Q 72
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGF 111
LVHT E+V F G E K GF
Sbjct: 73 LVHTAEFVDSFTGGTLDEARMKRIGF 98
>gi|167648847|ref|YP_001686510.1| histone deacetylase superfamily protein [Caulobacter sp. K31]
gi|167351277|gb|ABZ74012.1| histone deacetylase superfamily [Caulobacter sp. K31]
Length = 305
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 88/208 (42%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA IF+ D +VFTFSMH +N+P RK SDLDV + GT D
Sbjct: 155 VLVVDLDVHQGDGTARIFEGDASVFTFSMHAEKNFPARKATSDLDVNLPDGTGDE----- 209
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L + E + LL P++ F+ AG D L
Sbjct: 210 -----AYLGKLGELLPE------LLARVAPDLVFFN---------AGVDPHADDKLGRLS 249
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R+ + +VL + + GIPV V
Sbjct: 250 LSDEGLARR---------------------------------EAFVLGSCLERGIPVTGV 276
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY ADID+LA R ++HRAA K
Sbjct: 277 IGGGYDADIDRLAHRHALLHRAAREALK 304
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAGFC+ ND+A+AAR L+ G V +VL+VDLDVHQ
Sbjct: 121 GSHHAQADTGAGFCVFNDVAVAARRLLAEGKVGQVLVVDLDVHQ 164
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP +LA+ PDLV ++AGVDPH D+LG+L+L+D G
Sbjct: 211 YLGKLGELLPELLARVAPDLVFFNAGVDPHADDKLGRLSLSDEG 254
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
PI+H + +P HRFPM KFS+ L + V + + P+ I E LVH +
Sbjct: 7 PIVHHPAFRAEMPVGHRFPMDKFSRLAAVLEAEGVAGPAG-FVRPEPIDEDSLRLVHDEA 65
Query: 92 YVHKFFN 98
YV +
Sbjct: 66 YVRGVID 72
>gi|387895767|ref|YP_006326064.1| histone deacetylase family protein [Pseudomonas fluorescens A506]
gi|387163772|gb|AFJ58971.1| histone deacetylase family protein [Pseudomonas fluorescens A506]
Length = 306
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 107/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + QL+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTEDSQLLRPPLCPADILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDEG 251
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|26991445|ref|NP_746870.1| histone deacetylase superfamily protein [Pseudomonas putida KT2440]
gi|24986520|gb|AAN70334.1|AE016675_4 histone deacetylase family protein [Pseudomonas putida KT2440]
Length = 304
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLVGSGLT-TDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 62 SYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPEAITV 178
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRD 267
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 75/210 (35%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTA 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 243 GYLQLTDAGVA---------------------------------ARDEAVLRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D LA+R I+H +A V
Sbjct: 270 VMGVIGGGYSKDRTALARRHGILHHSAARV 299
>gi|428224317|ref|YP_007108414.1| histone deacetylase [Geitlerinema sp. PCC 7407]
gi|427984218|gb|AFY65362.1| Histone deacetylase [Geitlerinema sp. PCC 7407]
Length = 305
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 91/209 (43%), Gaps = 60/209 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDDAGNRT 467
++ + L + GDGTA IF DP+VFTFSMHC N+P KQ SDLDV + G DDA +T
Sbjct: 152 VLIVDLDVHQGDGTALIFQDDPSVFTFSMHCEVNFPGTKQRSDLDVPLPEGLEDDAYLQT 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A LSQ + + +DP + L
Sbjct: 212 LAQYLPDLLSQVKPDL------VLYDAGADPHVGD--------------------RLGKL 245
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G+ R+ + VLS+C + +G PVA+
Sbjct: 246 ALTDSGLYRR------------------DMQVLSTC---------------LGSGYPVAS 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYK 616
V GGGY +++ L R +++HRAA+ VY+
Sbjct: 273 VIGGGYAHNLNDLVYRHSLLHRAASEVYR 301
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 108/274 (39%), Gaps = 51/274 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP HRFPM+KF + L++D V S Q +P+ + I VH
Sbjct: 3 LPLVYHPDYVIPLPAGHRFPMAKFRLLYESLIQDGVAHAS-QFHQPEYPTPEILAHVHGP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
+Y+ + G K Q+ G WS+ L R T T + A
Sbjct: 62 DYIQAYCEGTLDAKAQRRIGLPWSSALVRRTCTAVGGTLLTARMALEHGLACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIA---------AVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIH 184
P +F D+A V+ ++ + + + +F D +V +H
Sbjct: 122 AFPNHGSGFCIFNDLAIAARVLQAEGVVQKVLIVDLDVHQGDGTALIFQDDPSVFTFSMH 181
Query: 185 FMVGI-NTQPVSGYQATLKEHLPG-----ILAQFKP--------DLVIYDAGVDPHQHDE 230
V T+ S L E L LAQ+ P DLV+YDAG DPH D
Sbjct: 182 CEVNFPGTKQRSDLDVPLPEGLEDDAYLQTLAQYLPDLLSQVKPDLVLYDAGADPHVGDR 241
Query: 231 LGKLNLTDHG----------ECISSSARISSEAG 254
LGKL LTD G C+ S ++S G
Sbjct: 242 LGKLALTDSGLYRRDMQVLSTCLGSGYPVASVIG 275
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAG 515
GT DA R + L W + L +R+ + + L THHAFP+HG+G
Sbjct: 70 GTLDAKAQRRIGLPWSSALVRRTCTAVGGTLLTARMALEHGLACNTAGGTHHAFPNHGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND+A+AAR L G+V+KVLIVDLDVHQ
Sbjct: 130 FCIFNDLAIAARVLQAEGVVQKVLIVDLDVHQ 161
>gi|407368493|ref|ZP_11115025.1| histone deacetylase superfamily protein [Pseudomonas mandelii JR-1]
Length = 306
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPPEILALAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFDIAAVLADLIHFMVGINTQPV--- 194
+D A +AV F L+ R + FD D ++ + V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHFLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 179
Query: 195 --------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPKGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPKGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 270 VVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 304
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + +L+ G V +VLI D DVHQ
Sbjct: 137 AVISHFLLESGRVNRVLIFDCDVHQ 161
>gi|386019455|ref|YP_005937479.1| histone deacetylase family protein [Pseudomonas stutzeri DSM 4166]
gi|327479427|gb|AEA82737.1| histone deacetylase family protein [Pseudomonas stutzeri DSM 4166]
Length = 306
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 117/268 (43%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y LPP HRFPM KF ++LV + + L+ P S I L H
Sbjct: 3 LPLVYHDDYSPPLPPGHRFPMEKFRLLRDHLVTLGMTTDAA-LLRPSLCSRDILTLAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ E + G WS LA R + + H +A +L
Sbjct: 62 DYVARYCSGEMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
D A+ + DL IA+YL + R + FD A +L ++
Sbjct: 122 --AHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENVPDAVTVS 179
Query: 183 IHFMVGINTQ-----------PVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
+H T+ P G +A L+ + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKADSDWDIPLPPGMGDEAYLQVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+LTD G SA + G D
Sbjct: 240 DALGLLSLTDAGLAARDSAVLDHCLGRD 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 75/204 (36%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + P T S+HC +N+P RK SD D+ + G D V
Sbjct: 160 HQGDGTARILENVPDAVTVSLHCEKNFPTRKADSDWDIPLPPGMGDEAYLQVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL + P++ + AG + D AL
Sbjct: 213 ---------HDTLNYLLPIYQPDLVLYD---------AGVDVHRDDALG----------- 243
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+LS GL RD VLD + IPV + GGGY D
Sbjct: 244 ----------------------LLSLTDAGLAARDSAVLDHCLGRDIPVVGLIGGGYDKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R +H +A ++ GL
Sbjct: 282 RALLARRHATLHVSAHSAWQRHGL 305
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VIALYLLESGRVGRVLIFDCDVHQ 161
>gi|398852713|ref|ZP_10609361.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM80]
gi|398243287|gb|EJN28878.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM80]
Length = 306
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H +
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPEICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +A+ + LQ R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQGDGTARILHDTPEAITVS 179
Query: 183 IHFMVGINTQPVSG--------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPKGMGDGDYLKVVDDTLNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDEG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 78/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEKNFPARKAESDWDIPLPKGMGDGDY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDTLNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLQLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
+V GGGY D LA+R I+H +A V++ G
Sbjct: 271 MSVIGGGYSKDRHALARRHGILHHSAQRVWQSHG 304
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V +VLI D DVHQ
Sbjct: 137 AIISHYLLQSGRVNRVLIFDCDVHQ 161
>gi|86608428|ref|YP_477190.1| histone deacetylase family protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556970|gb|ABD01927.1| histone deacetylase family protein [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 305
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 100/214 (46%), Gaps = 62/214 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDA 463
R LI+++ + + GDGTA+IF +P VFTFSMHC N+P KQ SDLDV + VG D+A
Sbjct: 150 QRLLIVDLDV--HQGDGTAWIFRSEPRVFTFSMHCEANFPATKQQSDLDVPLPVGMEDEA 207
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
+T+A L+Q +R + L L D ++ L+ +A
Sbjct: 208 YLQTLADHLPDLLAQ----VRPD------LVLYDAGVDPHEED-----------LLGKLA 246
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
L+ + L R + VL++C + G
Sbjct: 247 LSDQGLFRR-----------------------DMQVLNTC---------------LKQGY 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
PVA V GGGY D+++L R +++HRAA+ VY++
Sbjct: 269 PVACVIGGGYGKDLNRLVYRHSLLHRAASEVYRQ 302
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 102/257 (39%), Gaps = 55/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ Y LPP HRFPM KF L+R+ VI + +Q+ P+ + E VHT
Sbjct: 3 LPIVYHPDYSAPLPPGHRFPMPKFRLLQELLLREGVI-RPQQVHHPELPPLAWIESVHTP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYL--------------- 135
EYV + G K Q+ G WS L R V V+ L
Sbjct: 62 EYVRAYCEGSLEAKLQRRIGLPWSPELVQRT-CRAVGGTVLTAQLALRHGLACNTAGGTH 120
Query: 136 ---PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ 192
P + +F D+A I V L L +R + D+ D ++ +
Sbjct: 121 HAFPAYGSGFCIFNDLA------IAAQVLLQQGLVQRLLIVDLDVHQGDGTAWIFRSEPR 174
Query: 193 ------------PVSGYQATLKEHLP---------GILAQFKPD--------LVIYDAGV 223
P + Q+ L LP LA PD LV+YDAGV
Sbjct: 175 VFTFSMHCEANFPATKQQSDLDVPLPVGMEDEAYLQTLADHLPDLLAQVRPDLVLYDAGV 234
Query: 224 DPHQHDELGKLNLTDHG 240
DPH+ D LGKL L+D G
Sbjct: 235 DPHEEDLLGKLALSDQG 251
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFL--FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
R + L W L QR+ + + LR THHAFP +G+GFC+ ND+
Sbjct: 77 QRRIGLPWSPELVQRTCRAVGGTVLTAQLALRHGLACNTAGGTHHAFPAYGSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+AA+ L++ G+V+++LIVDLDVHQ
Sbjct: 137 AIAAQVLLQQGLVQRLLIVDLDVHQ 161
>gi|398869111|ref|ZP_10624496.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM78]
gi|398231625|gb|EJN17611.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM78]
Length = 312
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ PQ I L H
Sbjct: 9 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPQLCPADILALAHDP 67
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS L R + + H +A +L
Sbjct: 68 SYIERYMSGDLSREDQRRLGLPWSEALTRRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 127
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A +AV F L+ R + FD D ++H V
Sbjct: 128 --AHYDYPAGFCIFNDLAVISHFLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 185
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 186 LHCEKNFPARKAESDWDIPLPNGMGDADYLQVVDDALNYLLPLYQPDLVLYDAGVDVHKD 245
Query: 229 DELGKLNLTDHG 240
D LG L LTD+G
Sbjct: 246 DALGYLKLTDNG 257
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 80/215 (37%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 156 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDAD 213
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 214 YLQVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 248
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L +G+ RD V+ + IP
Sbjct: 249 GYLKLTDNGVA---------------------------------ARDESVMRHCLGRDIP 275
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 276 VVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 310
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 83 QRRLGLPWSEALTRRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 142
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + +L+ G V +VLI D DVHQ
Sbjct: 143 AVISHFLLESGRVNRVLIFDCDVHQ 167
>gi|398986788|ref|ZP_10691706.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM24]
gi|399011733|ref|ZP_10714063.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM16]
gi|398117317|gb|EJM07069.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM16]
gi|398151664|gb|EJM40206.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM24]
Length = 306
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H +
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPEICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +A+ + LQ R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAIISHYLLQSGRVNRVLIFDCDVHQGDGTARILHDTPEAITVS 179
Query: 183 IHFMVGINTQPVSG--------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPKGMGDGDYLKVVDDTLSYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLQLTDAG 251
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 77/214 (35%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEKNFPARKAESDWDIPLPKGMGDGDY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDTLSYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLQLTDAGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 MGVIGGGYSKDRHALARRHGILHHSAQRVWQSHG 304
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSILAAEKALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL++ G V +VLI D DVHQ
Sbjct: 137 AIISHYLLQSGRVNRVLIFDCDVHQ 161
>gi|148549841|ref|YP_001269943.1| histone deacetylase superfamily protein [Pseudomonas putida F1]
gi|148513899|gb|ABQ80759.1| histone deacetylase superfamily [Pseudomonas putida F1]
Length = 317
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV + + L+ P I L H +
Sbjct: 16 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLVGSGLT-TDQALLRPDICPNDILALAHDR 74
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 75 SYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHH 134
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 135 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPEAITV 191
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 192 SLHCEQNFPARKAQSDWDIPLPRGMGDTAYLRVVDDALNYLLPLYQPDLVLYDAGVDVHK 251
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 252 DDALGYLQLTDAGVAARDEAVLRHCLGRD 280
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 90 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 149
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 150 AVISRYLLEAGRVHRVLIFDCDVHQ 174
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 75/210 (35%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 163 HRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTA 220
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 221 YLRVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 255
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 256 GYLQLTDAGVA---------------------------------ARDEAVLRHCLGRDIP 282
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D LA+R I+H +A V
Sbjct: 283 VMGVIGGGYSKDRTALARRHGILHHSAARV 312
>gi|440740501|ref|ZP_20919983.1| putative histone deacetylase family protein [Pseudomonas
fluorescens BRIP34879]
gi|447918449|ref|YP_007399017.1| putative histone deacetylase family protein [Pseudomonas poae
RE*1-1-14]
gi|440376317|gb|ELQ12992.1| putative histone deacetylase family protein [Pseudomonas
fluorescens BRIP34879]
gi|445202312|gb|AGE27521.1| putative histone deacetylase family protein [Pseudomonas poae
RE*1-1-14]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 51/271 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++LV + + S+ L+ P+ I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLVSTGLTEDSR-LLRPELCPPQILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIARYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIALPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHGECISSSARISSEAGVD 256
H+ D LG L LTD G A + G D
Sbjct: 237 HKDDALGYLKLTDSGVAARDEAVMRHCLGRD 267
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 80/215 (37%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+A+ +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIALPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDSGVA---------------------------------ARDEAVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|330811883|ref|YP_004356345.1| histone deacetylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423699453|ref|ZP_17673943.1| histone deacetylase family protein [Pseudomonas fluorescens
Q8r1-96]
gi|327379991|gb|AEA71341.1| Putative histone deacetylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996896|gb|EIK58226.1| histone deacetylase family protein [Pseudomonas fluorescens
Q8r1-96]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPDFPAEHRFPMDKFRLLRDHLV-DSGLTRDADLLRPSLCPPDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +AV +FL R + FD A +L D
Sbjct: 122 --AHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDCDVHQGDGTARILHDTPDAVTVS 179
Query: 183 IHFMVGINTQPV--------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMEDAAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 83/217 (38%), Gaps = 66/217 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G +DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPDAVTVSLHCEKNFPARKAQSDWDIPLPMGMEDAAY 208
Query: 466 RTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
V AL ++ L Q + + G+ ++++ D G+ + D
Sbjct: 209 LKVVDDALNYLLPLYQPDLVLYDAGV----------DVHK--------DDALGYLKLTDE 250
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAG 582
LAAR D V+ +
Sbjct: 251 GLAAR-------------------------------------------DESVMRHCLGRD 267
Query: 583 IPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
IPV V GGGY D LA+R I+H +A V+ G
Sbjct: 268 IPVVGVIGGGYSKDRQALARRHGILHHSAQRVWTSSG 304
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RY + G V +VLI D DVHQ
Sbjct: 137 AVISRYFLASGRVSRVLIFDCDVHQ 161
>gi|386014013|ref|YP_005932290.1| Histone deacetylase superfamily [Pseudomonas putida BIRD-1]
gi|313500719|gb|ADR62085.1| Histone deacetylase superfamily [Pseudomonas putida BIRD-1]
Length = 304
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLVGSGLT-TDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 62 SYIARYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPEAITV 178
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRD 267
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 75/210 (35%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTA 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 243 GYLQLTDAGVA---------------------------------ARDEAVLRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D LA+R I+H +A V
Sbjct: 270 VMGVIGGGYSKDRTALARRHGILHHSAARV 299
>gi|81300202|ref|YP_400410.1| histone deacetylase/AcuC/AphA family protein-like protein
[Synechococcus elongatus PCC 7942]
gi|81169083|gb|ABB57423.1| histone deacetylase/AcuC/AphA family protein-like [Synechococcus
elongatus PCC 7942]
Length = 304
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 87/211 (41%), Gaps = 64/211 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTA+IF DP VFTFSMHC N+P RKQ SD DV + G DDA +
Sbjct: 152 ILIVDLDVHQGDGTAWIFQDDPRVFTFSMHCEANFPARKQHSDCDVPLPEGMEDDAYLQQ 211
Query: 468 VALTWVTFLSQRSEKM--RNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LSQ + N G+ DP HG L
Sbjct: 212 LAQYLPDLLSQVRPNLVIYNAGV--------DP-------------HGGD-------RLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ R+ + VL +CV G PV
Sbjct: 244 KLALTDTGLFRR------------------EMQVLETCV---------------RQGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
A V GGGYC D + L R ++ RAA+ VY+
Sbjct: 271 AAVLGGGYCEDFNALVYRHSLCQRAASDVYR 301
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D+ R + L W L +R+ I L L + THHAFPD+G+GFC+
Sbjct: 73 DERSLRRIGLPWSPALVERTWIAVGGTILTARLALQQGLACNLAGGTHHAFPDYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+AAR L++ +V ++LIVDLDVHQ
Sbjct: 133 FNDCAIAARLLLQERLVERILIVDLDVHQ 161
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP HRFPM+KF + L+R++V+ +Q +P + VH+
Sbjct: 3 LPLVYHPGYSAPLPSTHRFPMAKFRLLHDRLLRERVV-YPQQFHQPDRPPLEWLTSVHSL 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+Y+ + G E+ + G WS L R
Sbjct: 62 DYIQAYSQGTLDERSLRRIGLPWSPALVERT 92
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L ++LP +L+Q +P+LVIY+AGVDPH D LGKL LTD G
Sbjct: 207 AYLQQLAQYLPDLLSQVRPNLVIYNAGVDPHGGDRLGKLALTDTG 251
>gi|395445593|ref|YP_006385846.1| histone deacetylase superfamily protein [Pseudomonas putida ND6]
gi|388559590|gb|AFK68731.1| histone deacetylase superfamily protein [Pseudomonas putida ND6]
Length = 317
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 110/269 (40%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV + + L+ P I L H +
Sbjct: 16 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLVGSGLT-TDQALLRPDICPNDILALAHDR 74
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 75 SYIARYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHH 134
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 135 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPEAITV 191
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 192 SLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 251
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 252 DDALGYLQLTDAGVAARDEAVLRHCLGRD 280
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 90 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 149
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 150 AVISRYLLEAGRVHRVLIFDCDVHQ 174
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 75/210 (35%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 163 HRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGDTA 220
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 221 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 255
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 256 GYLQLTDAGVA---------------------------------ARDEAVLRHCLGRDIP 282
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D LA+R I+H +A V
Sbjct: 283 VMGVIGGGYSKDRTALARRHGILHHSAARV 312
>gi|434387387|ref|YP_007097998.1| deacetylase, histone deacetylase/acetoin utilization protein
[Chamaesiphon minutus PCC 6605]
gi|428018377|gb|AFY94471.1| deacetylase, histone deacetylase/acetoin utilization protein
[Chamaesiphon minutus PCC 6605]
Length = 305
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 93/215 (43%), Gaps = 64/215 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN-RT 467
I+ + L + GDGTA IF +DP+VFTFSMHC N+P +KQ SDLDV + G +DA +T
Sbjct: 152 ILIVDLDVHQGDGTAAIFQRDPSVFTFSMHCDVNFPSKKQTSDLDVPLREGMEDAEYLKT 211
Query: 468 VALTWVTFLSQRSEK--MRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
++ LSQ + + G+ DP I+ A + G
Sbjct: 212 LSQYLPDLLSQVKPDLVLYDAGV--------DPHISDRLGKLALTNTG------------ 251
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
I D D + VL +CV S G PV
Sbjct: 252 --------------IFDRDFY------------VLDTCV---------------SQGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
A V GGGY +I L R +++HR+A+ VY + L
Sbjct: 271 ACVIGGGYAENIPSLVYRHSLLHRSASKVYHKYKL 305
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L R+ I L + + THHAF + G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPELVNRTCIALGGSILTAKLAIEHGIACNTAGGTHHAFANMGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R + + G+ +K+LIVDLDVHQ
Sbjct: 133 FNDLAIASRVIQKLGLAKKILIVDLDVHQ 161
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL ++LP +L+Q KPDLV+YDAGVDPH D LGKL LT+ G
Sbjct: 208 YLKTLSQYLPDLLSQVKPDLVLYDAGVDPHISDRLGKLALTNTG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+PI++ Y LP +HRFPMSKF + L+ D ++ ++Q P ELVH
Sbjct: 3 VPIVYHPDYVVPLPDSHRFPMSKFRILYELLLADGLV-TTEQTFAPTLPPTEWLELVHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y+ ++ G K Q+ G WS L +R
Sbjct: 62 AYIQAYYTGTLDPKAQRRIGLPWSPELVNR 91
>gi|333899036|ref|YP_004472909.1| histone deacetylase superfamily protein [Pseudomonas fulva 12-X]
gi|333114301|gb|AEF20815.1| histone deacetylase superfamily [Pseudomonas fulva 12-X]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 112/268 (41%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV + + ++L+ P+ I L H
Sbjct: 3 LPLIYHDDYSPPFPGGHRFPMEKFRLLRDHLVASGLT-RDEELLRPEICPADILALCHCP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G WS LA R + ++ H +A +L
Sbjct: 62 AYIERYLSGDLSHEDQRRLGLPWSPELARRTVRAVGGSLLASEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQR-RPVFFDIAAVLAD-----LIHFMVGINTQ 192
+D A + DL IA YL + R + FD D L H I
Sbjct: 122 --AHYDYPAGFCIFNDLAVIARYLLESGKAGRVLIFDCDVHQGDGTARLLEHVPDAITVS 179
Query: 193 ------------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
P+ + Y + + L +LA ++PD+V+YDAGVD H+
Sbjct: 180 LHCEQNYPARKASSDWDIPLPRGMGDADYLKVVDDTLGYLLALYQPDIVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A ++ G D
Sbjct: 240 DALGYLQLTDAGVAARDEAVLNHCLGRD 267
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 84/215 (39%), Gaps = 60/215 (27%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA + + P T S+HC +NYP RK SD D+ + G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARLLEHVPDAITVSLHCEQNYPARKASSDWDIPLPRGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P+I +
Sbjct: 209 LKVV----------------DDTLGYLLALYQPDIVLYDA-------------------- 232
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
+DVH+ +L L G+ RD VL+ + IPV
Sbjct: 233 ----------------GVDVHKDD------ALGYLQLTDAGVAARDEAVLNHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D LA+R I+H +A V+++RGL
Sbjct: 271 VGVIGGGYSKDRHALARRHGILHHSAARVWQQRGL 305
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSPELARRTVRAVGGSLLASEQALQHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ARYL+ G +VLI D DVHQ
Sbjct: 137 AVIARYLLESGKAGRVLIFDCDVHQ 161
>gi|398996125|ref|ZP_10698987.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM21]
gi|398127661|gb|EJM17067.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM21]
Length = 325
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 22 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPAQILALAHDA 80
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 81 AYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 140
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 141 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPDAVTVS 198
Query: 189 INTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 199 LHCEKNFPARKAESDWDIPLPKGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 258
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 259 DALGYLKLTDEG 270
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 169 NRVLIFDCDV--HQGDGTARILHNTPDAVTVSLHCEKNFPARKAESDWDIPLPKGMGDAD 226
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 227 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 261
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 262 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 288
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 289 VVGVIGGGYSKDRKALARRHGILHHSAQRVWQSSG 323
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 96 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 155
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 156 AVISHYLLESGRVNRVLIFDCDVHQ 180
>gi|346643249|ref|YP_262471.2| histone deacetylase [Pseudomonas protegens Pf-5]
gi|341580402|gb|AAY94613.2| histone deacetylase family protein [Pseudomonas protegens Pf-5]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 3 LPLIYHDDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPAEILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPV--- 194
+D A + DL I+ YL + R + FD D ++ V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLESGRVGRVLIFDCDVHQGDGTARILQHTADAVTVS 179
Query: 195 --------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ Y + + L +L ++PDLV+YDAGVD HQ
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDTLNYLLPLYQPDLVLYDAGVDVHQD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDAG 251
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 81/214 (37%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILQHTADAVTVSLHCEKNFPARKAQSDWDIPLPMGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG
Sbjct: 209 LNVV----------------DDTLNYLLPLYQPDLVLYD---------AG---------- 233
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
+DVHQ +L L G+ RD V+ + IPV
Sbjct: 234 -----------------VDVHQDD------ALGYLKLTDAGVAERDERVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 VGVIGGGYSKDRQALARRHGILHHSAQKVWESSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVGRVLIFDCDVHQ 161
>gi|423693709|ref|ZP_17668229.1| histone deacetylase family protein [Pseudomonas fluorescens SS101]
gi|388002286|gb|EIK63615.1| histone deacetylase family protein [Pseudomonas fluorescens SS101]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + QL+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTEDSQLLRPPLCPADILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDAG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDAGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|398896408|ref|ZP_10647537.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM55]
gi|398178668|gb|EJM66313.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM55]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPDLCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 SYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 179
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 270 VVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 304
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|409422584|ref|ZP_11259675.1| histone deacetylase superfamily protein [Pseudomonas sp. HYS]
Length = 304
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV + + L+ P+ + I L H +
Sbjct: 3 LPLIYHDDYSPAFPAEHRFPMDKFRLLRDHLVASGLTTDAA-LLRPEICPDDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 62 AYIERYMHGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQRRPVF-FDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + V FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLEAGRVHKVLIFDCDVHQGDGTARILHNTPDAITV 178
Query: 188 GINTQ--------------PVS---GYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ G QA LK + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAESDWDIPLPRGMGDQAYLKVVDDALNYLLPLYRPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLQLTDEG 251
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 77/210 (36%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HKVLIFDCDV--HQGDGTARILHNTPDAITVSLHCEQNFPARKAESDWDIPLPRGMGDQA 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYRPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 243 GYLQLTDEGVA---------------------------------ARDESVLRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D + LA+R I+H +A+ V
Sbjct: 270 VVGVIGGGYSKDREALARRHGILHHSASRV 299
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V KVLI D DVHQ
Sbjct: 137 AVISHYLLEAGRVHKVLIFDCDVHQ 161
>gi|398954423|ref|ZP_10675959.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM33]
gi|398152442|gb|EJM40961.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM33]
Length = 308
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 5 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDVDLLRPDLCPADILALAHDP 63
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 64 SYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQAMEHGLACHLAGGTHH 123
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD-----LIHFMVGI--- 189
+D A + DL I+ YL + R + FD D L H +
Sbjct: 124 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILQHTPEAVTVS 181
Query: 190 ---------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 182 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 241
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 242 DALGYLKLTDEG 253
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 152 NRVLIFDCDV--HQGDGTARILQHTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDAD 209
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 210 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 244
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 245 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 271
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 272 VVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 306
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + + THHA D+ AGFC+ ND+
Sbjct: 79 QRRLGLPWSEALARRTVRAVGGSLLAAEQAMEHGLACHLAGGTHHAHYDYPAGFCIFNDL 138
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 139 AVISHYLLESGRVNRVLIFDCDVHQ 163
>gi|431928586|ref|YP_007241620.1| deacetylase [Pseudomonas stutzeri RCH2]
gi|431826873|gb|AGA87990.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas stutzeri RCH2]
Length = 306
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 114/268 (42%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ + Y LPP HRFPM KF ++LV + + L+ P+ I L H
Sbjct: 3 LPLVFHDDYSPPLPPGHRFPMEKFRLLRDHLVALGLTTDAT-LLRPELCGHDILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+YV ++ +G+ E + G WS LA R + + H +A +L
Sbjct: 62 DYVARYCSGEMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
D A+ + DL IA+YL + R + FD A +L ++
Sbjct: 122 --AHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENIPDAVTVS 179
Query: 183 -----------IHFMVGINTQPVSGYQATLK---EHLPGILAQFKPDLVIYDAGVDPHQH 228
H I P G +A LK + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVVHDTLNYLLPIYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+L+D G SA + G D
Sbjct: 240 DALGLLSLSDAGLAARDSAVLDHCLGRD 267
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHRDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VIALYLLESGRVGRVLIFDCDVHQ 161
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 76/207 (36%), Gaps = 64/207 (30%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV---ALTWV 473
+ GDGTA I + P T S+HC +N+P RK SD D+ + G D V L ++
Sbjct: 160 HQGDGTARILENIPDAVTVSLHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVVHDTLNYL 219
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+ Q + + G+ +++R D G ++D LAA
Sbjct: 220 LPIYQPDLVLYDAGV----------DVHR--------DDALGLLSLSDAGLAA------- 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
RD VLD + IPV + GGGY
Sbjct: 255 ------------------------------------RDSAVLDHCLGRDIPVVGLIGGGY 278
Query: 594 CADIDQLAQRQTIIHRAATHVYKERGL 620
D LA+R +H +A ++ GL
Sbjct: 279 DKDRALLARRHATLHVSAHSAWQRHGL 305
>gi|427724084|ref|YP_007071361.1| histone deacetylase [Leptolyngbya sp. PCC 7376]
gi|427355804|gb|AFY38527.1| Histone deacetylase [Leptolyngbya sp. PCC 7376]
Length = 300
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + GDGTAFIF +P V+TFSMHC N+P +KQ S+ D+ + G DD G
Sbjct: 152 ILIIDLDVHQGDGTAFIFQDEPDVYTFSMHCEINFPSKKQNSNFDIPLPAGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+ + LL P++ F D G D + R
Sbjct: 208 ---YLQILANHLDD---------LLSAVKPDL-------VFFDAGV------DTHVGDR- 241
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ K+ + D +++ R VLS+C +AG PVA V
Sbjct: 242 ------LGKLAMTDRGIYRRER-------MVLSACH---------------AAGYPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY +ID L R +++HRAA ++
Sbjct: 274 IGGGYSKNIDDLVYRHSLLHRAANDIF 300
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 23/258 (8%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
P+I+ Y +P HRFPM KF + + L+RD VI +S+Q+ EP+ ELVH +
Sbjct: 3 FPVIYHPNYVTPIPEEHRFPMPKFKRLYEMLLRDDVI-RSEQVYEPEFPEMDWLELVHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---DPVPTHVIAVYLPFFLQRR----- 142
Y+ + NG +K Q+ G WS G+ +R T V T +A+
Sbjct: 62 NYIDAYRNGTLDKKAQRRIGLPWSKGVVTRTLTAIGGTVTTAKLALEHGLACNTAGGTHH 121
Query: 143 --PVFFDIAAVLADLICIAVYLTFF-LQRRPVFFDIAAVLADLIHFMVGINTQP-VSGYQ 198
P + +L DL A + L ++ + D+ D F+ +P V +
Sbjct: 122 AFPTYGSGFCILNDLAIAAKTVRHLGLAKKILIIDLDVHQGDGTAFI--FQDEPDVYTFS 179
Query: 199 ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---ISSEAGV 255
+ + P D+ + AG+D + ++ L +H + + S+ + + +AGV
Sbjct: 180 MHCEINFPSKKQNSNFDIPL-PAGLDDDGYLQI----LANHLDDLLSAVKPDLVFFDAGV 234
Query: 256 DPHQHDELGKLNLTDHGV 273
D H D LGKL +TD G+
Sbjct: 235 DTHVGDRLGKLAMTDRGI 252
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP +G+GFC++ND+A+AA+ + G+ +K+LI+DLDVHQ
Sbjct: 118 GTHHAFPTYGSGFCILNDLAIAAKTVRHLGLAKKILIIDLDVHQ 161
>gi|423097458|ref|ZP_17085254.1| histone deacetylase family protein [Pseudomonas fluorescens Q2-87]
gi|397887914|gb|EJL04397.1| histone deacetylase family protein [Pseudomonas fluorescens Q2-87]
Length = 306
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDVDLLRPSLCPPDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFD--------IAAVLADL------- 182
+D A +AV +FL R + FD A +L D
Sbjct: 122 --AHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDCDVHQGDGTARILHDTPDAVTVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G++ Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMDD---GAYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDEG 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 82/217 (37%), Gaps = 66/217 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DD
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPDAVTVSLHCEKNFPARKAQSDWDIPLPMGMDDGAY 208
Query: 466 RTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
V AL ++ L Q + + G+ ++++ D G+ + D
Sbjct: 209 LKVVDDALNYLLPLYQPDLVLYDAGV----------DVHK--------DDALGYLKLTDE 250
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAG 582
LAAR D V+ +
Sbjct: 251 GLAAR-------------------------------------------DESVMRHCLGRD 267
Query: 583 IPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
IPV V GGGY D LA+R I+H +A V+ G
Sbjct: 268 IPVVGVIGGGYSKDRKALARRHGILHHSAEKVWVSSG 304
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RY + G V +VLI D DVHQ
Sbjct: 137 AVISRYFLASGRVSRVLIFDCDVHQ 161
>gi|443468645|ref|ZP_21058852.1| Deacetylase [Pseudomonas pseudoalcaligenes KF707]
gi|442897864|gb|ELS24681.1| Deacetylase [Pseudomonas pseudoalcaligenes KF707]
Length = 305
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 112/255 (43%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y P HRFPM KF + +L+ D + +L P + L H
Sbjct: 3 LPLVYHDDYSPPFPAEHRFPMEKFRLLYRHLL-DSGLTTDARLHRPDICPPEVLALAHCP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR-VR--------TDPVPTHVIAVYLPFFLQR 141
+Y+ +F G+ + +EQ+ G WS LA R VR + H +A +L
Sbjct: 62 DYIRRFAEGELSREEQRRLGLPWSPPLARRTVRAVGGSLRAAELALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYL--TFFLQRRPVF-FDI------AAVLADL------- 182
+D AA + DL ++ YL T +QR +F D+ A +LAD
Sbjct: 122 --AHYDHAAGFCIFNDLAVVSRYLLETGRVQRVLIFDCDVHQGDGTARILADTPDAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y +++ L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAESDWDIPLPMGLGD---AEYLQVVEDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLQLTDAG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 66/218 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILADTPDAITVSLHCEKNFPARKAESDWDIPLPMGLGDAEY 208
Query: 466 RTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
V AL ++ L Q + + G+ ++++ D G+ + D
Sbjct: 209 LQVVEDALNYLLPLYQPDLVLYDAGV----------DVHK--------DDALGYLQLTDA 250
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAG 582
+AAR TV+ C +
Sbjct: 251 GVAAR----------------------------DETVMRHC---------------LGRD 267
Query: 583 IPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
IPV + GGGY D LA+R I+H +A V+K+ GL
Sbjct: 268 IPVVGLIGGGYDKDRAALARRHGILHHSAGRVWKDLGL 305
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSPPLARRTVRAVGGSLRAAELALEHGLACHLAGGTHHAHYDHAAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V++VLI D DVHQ
Sbjct: 137 AVVSRYLLETGRVQRVLIFDCDVHQ 161
>gi|429330586|ref|ZP_19211372.1| histone deacetylase superfamily protein [Pseudomonas putida CSV86]
gi|428764696|gb|EKX86825.1| histone deacetylase superfamily protein [Pseudomonas putida CSV86]
Length = 304
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 103/253 (40%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y P HRFPM KF ++L+ + + +L P I L H +
Sbjct: 3 LPLVYHDDYSPEFPAGHRFPMDKFRLLHDHLIASGLTTDA-ELHRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG+ + ++Q+ G WS LA R + + H IA +L
Sbjct: 62 AYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAELALQHGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD-----LIHFMVGINT 191
P F + DL I+ YL + R + FD D L H I
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLEAGRVHRVLIFDCDVHQGDGTARILEHTADAITV 178
Query: 192 Q-------PV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
PV S Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPVRKARSDWDIPLHRGMGDSEYLKIVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLQLTDAG 251
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAELALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLEAGRVHRVLIFDCDVHQ 161
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 79/210 (37%), Gaps = 60/210 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I + T S+HC +N+P RK SD D+ + G D+
Sbjct: 150 HRVLIFDCDV--HQGDGTARILEHTADAITVSLHCEQNFPVRKARSDWDIPLHRGMGDS- 206
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L + + +LL L P++ + AG + D AL
Sbjct: 207 ---------EYLKIVDDALN------YLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD VL + IP
Sbjct: 243 GYLQLTDAGVA---------------------------------ARDTCVLRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
V V GGGY D + LA+R I+H +A V
Sbjct: 270 VVGVIGGGYSKDREALARRHGILHHSAQRV 299
>gi|402698355|ref|ZP_10846334.1| histone deacetylase [Pseudomonas fragi A22]
Length = 306
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 102/253 (40%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV+ + + L+ P+ I L H +
Sbjct: 3 LPLIYHDDYSPEFPAEHRFPMDKFRLLRDHLVQSGLT-RDADLLRPELCPVDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMAGELAREDQRRLGLPWSEALARRTIRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD-----LIHFMVGINT 191
P F + DL I+ YL + R + FD D L H I
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLESGRVNRVLIFDCDVHQGDGTARILEHTPDAITV 178
Query: 192 Q-------PVSGYQATLKEHLPG-----------------ILAQFKPDLVIYDAGVDPHQ 227
P Q+ LP +LA ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEKNFPARKAQSDWDIGLPMGMGDTEYLQVVDDALNYLLALYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLKLTDAG 251
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 62/216 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I + P T S+HC +N+P RK SD D+ + +G D
Sbjct: 150 NRVLIFDCDV--HQGDGTARILEHTPDAITVSLHCEKNFPARKAQSDWDIGLPMGMGD-- 205
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMA 523
+L + + +LL L P++ + D G+ + D
Sbjct: 206 --------TEYLQVVDDALN------YLLALYQPDLVLYDAGVDVHKDDALGYLKLTDAG 251
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
+AAR D V+ + I
Sbjct: 252 VAAR-------------------------------------------DESVMRHCLGRDI 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
PV V GGGY D LA+R I+H +A V+ G
Sbjct: 269 PVVGVIGGGYSKDRKALARRHGILHHSAQKVWLSSG 304
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTIRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLESGRVNRVLIFDCDVHQ 161
>gi|374704111|ref|ZP_09710981.1| putative histone deacetylase family protein [Pseudomonas sp. S9]
Length = 305
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 109/270 (40%), Gaps = 53/270 (19%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRFPM KF ++L+ V+ ++L P I L H
Sbjct: 3 LPLVYHPDYSPEFPAEHRFPMEKFRLLHDHLIDSGVV-SDEELHSPALCPNEILALAHCP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ +G+ +Q+ G WSA LA R + + H +A +L
Sbjct: 62 DYIERYMSGELPHADQRRLGLPWSAALAQRTVRAVGGSILTAELALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------ 182
P F + DL I+ YL + +R + FD A +LAD
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLAAGKVQRVLIFDCDVHQGDGTARLLADTPEAITV 178
Query: 183 ------------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVD 224
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 179 SLHCEKNFPARKADSDWDIPLPMGMGDR---DYLQVVDDALNYLLPLYQPDLVLYDAGVD 235
Query: 225 PHQHDELGKLNLTDHGECISSSARISSEAG 254
H+ D LG L LTD G A + G
Sbjct: 236 VHKDDALGYLKLTDQGVATRDKAVLQHCVG 265
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMN 520
A R + L W L+QR+ + I L L + THHA DH AGFC+ N
Sbjct: 75 ADQRRLGLPWSAALAQRTVRAVGGSILTAELALEHGLACHLAGGTHHAHYDHPAGFCIFN 134
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQ 547
D+A+ +RYL+ G V++VLI D DVHQ
Sbjct: 135 DLAVISRYLLAAGKVQRVLIFDCDVHQ 161
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 78/213 (36%), Gaps = 60/213 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA + P T S+HC +N+P RK SD D+ + +G D
Sbjct: 151 RVLIFDCDV--HQGDGTARLLADTPEAITVSLHCEKNFPARKADSDWDIPLPMGMGDRDY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LQVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD VL + IPV
Sbjct: 244 YLKLTDQGVA---------------------------------TRDKAVLQHCVGRNIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
V GGGY D LA R I+H +AT V+ ER
Sbjct: 271 MGVIGGGYDKDRKALAARHGILHHSATQVWAER 303
>gi|398931340|ref|ZP_10665142.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM48]
gi|398163792|gb|EJM51942.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM48]
Length = 325
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 22 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDVDLLRPDLCPADILALAHDP 80
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 81 SYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 140
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 141 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 198
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 199 LHCEKNFPARKAESDWDIPLPNGMGDTDYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 258
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 259 DALGYLKLTDEG 270
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 78/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 169 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDTD 226
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 227 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 261
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 262 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 288
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 289 VVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 323
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 96 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 155
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 156 AVISHYLLESGRVNRVLIFDCDVHQ 180
>gi|398938902|ref|ZP_10668169.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM41(2012)]
gi|398164896|gb|EJM53021.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM41(2012)]
Length = 306
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 100/252 (39%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPDLCPPEILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQ----RRPVFFDIAAVLADLIHFMVGINTQPV--- 194
+D A +AV F L+ R + FD D ++ + V
Sbjct: 122 --AHYDHPAGFCIFNDLAVISHFLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 179
Query: 195 --------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 80/215 (37%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V++ G
Sbjct: 270 VVGVIGGGYSKDRKALARRHGILHHSAQRVWQSSG 304
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + +L+ G V +VLI D DVHQ
Sbjct: 137 AVISHFLLESGRVNRVLIFDCDVHQ 161
>gi|302384114|ref|YP_003819937.1| histone deacetylase [Brevundimonas subvibrioides ATCC 15264]
gi|302194742|gb|ADL02314.1| Histone deacetylase [Brevundimonas subvibrioides ATCC 15264]
Length = 313
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 81/188 (43%), Gaps = 73/188 (38%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ---------------- 547
+HHA P GAGFC+ ND+A+A R +I G +R+ L+VDLDVHQ
Sbjct: 123 GSHHAGPKGGAGFCVFNDIAVAGRAMIDAGEIRQALVVDLDVHQGDGTASIFEHEPRVFT 182
Query: 548 ----HTRSIPV---PS---------------LTVLSSCVPGLYMR--------------- 570
++ PV PS L L S +PGL R
Sbjct: 183 FSMHGEKNYPVRRGPSDLDIDLPDCTGDDAYLAALRSVLPGLLDRVEPDLVFYLAGVDPH 242
Query: 571 ------------------DYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
D YVL+T + A PV V GGGY DID+LA+R I+HRAA
Sbjct: 243 GEDRLGRLGLSNEGLSARDAYVLETCLPAA-PVVGVIGGGYDDDIDRLARRHAILHRAAA 301
Query: 613 HVYKERGL 620
++ RGL
Sbjct: 302 DAWR-RGL 308
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LPG+L + +PDLV Y AGVDPH D LG+L L++ G
Sbjct: 213 YLAALRSVLPGLLDRVEPDLVFYLAGVDPHGEDRLGRLGLSNEG 256
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P+++ Y LPP HRFPM K+++ L D+ + + L P+ S + VH
Sbjct: 9 PVVYHPAYSMALPPGHRFPMLKYARLAQVL-EDEGLVGPEGLYTPEPASFDMLAAVHDPG 67
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
YV + + + ++V G + ++ RV+
Sbjct: 68 YVRQVLDAAVPPEVERVIGLPVTREVSDRVQA 99
>gi|398885389|ref|ZP_10640302.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM60]
gi|398192581|gb|EJM79728.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM60]
Length = 306
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPPEILALAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPDAVTVS 179
Query: 189 INTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPKGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHNTPDAVTVSLHCEKNFPARKAESDWDIPLPKGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VVGVIGGGYSKDRKALARRHGILHHSAQRVWASSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|339489485|ref|YP_004704013.1| histone deacetylase superfamily protein [Pseudomonas putida S16]
gi|338840328|gb|AEJ15133.1| histone deacetylase superfamily protein [Pseudomonas putida S16]
Length = 304
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 107/269 (39%), Gaps = 47/269 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++L+ D + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLI-DSGLTTDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ NG + ++Q+ G WS LA R + + IA +L
Sbjct: 62 SYIERYMNGDLSREDQRRLGLPWSEALARRTVRAVGGSLLSAEMALQQGIACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPDAITV 178
Query: 188 GINTQ---PVSGYQATLKEHLP---GILAQFK--------------PDLVIYDAGVDPHQ 227
++ + P Q+ LP G +A K PDLV+YDAGVD H+
Sbjct: 179 SLHCEQNFPARKAQSDWDIPLPRGMGDMAYLKVVDDALNYLLPLYRPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHGECISSSARISSEAGVD 256
D LG L LTD G A + G D
Sbjct: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRD 267
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLSAEMALQQGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 77/211 (36%), Gaps = 62/211 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G D
Sbjct: 150 HRVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEQNFPARKAQSDWDIPLPRGMGD-- 205
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMA 523
+ +L + + +LL L P++ + D G+ + D
Sbjct: 206 --------MAYLKVVDDALN------YLLPLYRPDLVLYDAGVDVHKDDALGYLQLTDAG 251
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
+AAR D VL + I
Sbjct: 252 VAAR-------------------------------------------DEAVLRHCLGRDI 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHV 614
PV V GGGY D LA+R I+H +A V
Sbjct: 269 PVVGVIGGGYSKDRAALARRHGILHHSAARV 299
>gi|398873689|ref|ZP_10628942.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM74]
gi|398198844|gb|EJM85796.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM74]
Length = 325
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 22 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDTDLLRPDLCPAEILALAHDP 80
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 81 SYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 140
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 141 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 198
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 199 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 258
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 259 DALGYLKLTDEG 270
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 169 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDAD 226
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 227 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 261
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 262 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 288
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
+ V GGGY D LA+R I+H +A V++ G
Sbjct: 289 LVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 96 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 155
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 156 AVISHYLLESGRVNRVLIFDCDVHQ 180
>gi|312963190|ref|ZP_07777675.1| histone deacetylase superfamily [Pseudomonas fluorescens WH6]
gi|311282701|gb|EFQ61297.1| histone deacetylase superfamily [Pseudomonas fluorescens WH6]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV D + QL+ P I L H
Sbjct: 3 LPLIYHDDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTLDSQLLRPPLCPPQILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLADL------- 182
+D A + DL I+ YL + R + FD A +L D
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPEAITVS 179
Query: 183 -----------------IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
I +G+ + Y + + L +L ++PDLV+YDAGVD
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMGD---ADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG L LTD G
Sbjct: 237 HKDDALGYLKLTDAG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHDTPEAITVSLHCEKNFPARKAQSDWDIPLPMGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDAGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VMGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + I L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSILAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|398858263|ref|ZP_10613955.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM79]
gi|398239575|gb|EJN25282.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM79]
Length = 306
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLTRDTDLLRPDLCPPEILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAITV 178
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEKNFPARKAESDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLKLTDEG 251
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 79/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHNTPEAITVSLHCEKNFPARKAESDWDIPLPMGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLKLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 VGVIGGGYSKDRKALARRHGILHHSAQRVWQSSG 304
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|399000980|ref|ZP_10703700.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM18]
gi|398128735|gb|EJM18117.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM18]
Length = 306
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 101/253 (39%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDTDLLRPDLCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPV-- 194
P F + DL I+ YL + R + FD D ++ + V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTV 178
Query: 195 ---------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+ Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEKNFPARKAESDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLKLTDEG 251
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 79/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPMGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLKLTDEGVA---------------------------------ARDERVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R ++H +A V++ G
Sbjct: 271 VGVIGGGYSKDRKALARRHGLLHHSAQRVWQSSG 304
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|359451303|ref|ZP_09240710.1| hypothetical protein P20480_3448 [Pseudoalteromonas sp. BSi20480]
gi|358042944|dbj|GAA76959.1| hypothetical protein P20480_3448 [Pseudoalteromonas sp. BSi20480]
Length = 302
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 108/257 (42%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ + +I L +P S ELVH
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFAMSKFANLYAHVKKLGLI--GNNLTQPVLGSPEPLELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
Y+H +N + +K + G WSA L +R T P T H IA +L
Sbjct: 64 DNYIHDLWNNRLDDKAMRRIGLPWSAQLMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQ--------RRPVFFDI--------AAVLADL-- 182
FD + C+ L F Q + FD+ AA+LA
Sbjct: 124 H--AHFDFGSG----YCMVNDLAFTTQTLINSGEVTNVLIFDLDVHQGDGTAAMLAHQPY 177
Query: 183 -----IH-------------FMVGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGV 223
IH +G+ N + Y A + + L +L + P LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDIGLANHMQDAEYLAIVDDTLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q+D LGKL+++ G
Sbjct: 238 DIWQNDGLGKLDISWDG 254
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 58/199 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ L + GDGTA + P +T S+HC +N+PFRK SDLD+ + DA
Sbjct: 155 VLIFDLDVHQGDGTAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDA----- 209
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L+ + + +LL+ +P + + AG + + L
Sbjct: 210 -----EYLAIVDDTLS------YLLKELNPSLVLYD---------AGVDIWQNDGLGKLD 249
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ GI ++ D+ VL + IPVATV
Sbjct: 250 ISWDGIAKR---------------------------------DHLVLKRCLEHNIPVATV 276
Query: 589 TGGGYCADIDQLAQRQTII 607
GGGY D +LAQR I+
Sbjct: 277 IGGGYDKDHLRLAQRHGIV 295
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
DD R + L W L R+ + L L + THHA D G+G+C+
Sbjct: 76 DDKAMRRIGLPWSAQLMARTFTAPQGTLQTARLALKHGIACHLAGGTHHAHFDFGSGYCM 135
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+A + LI G V VLI DLDVHQ
Sbjct: 136 VNDLAFTTQTLINSGEVTNVLIFDLDVHQ 164
>gi|398837941|ref|ZP_10595225.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM102]
gi|398117499|gb|EJM07250.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM102]
Length = 306
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLARDTDLLRPDLCPPEILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 AYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAITV 178
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEKNFPARKAESDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLKLTDEG 251
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 79/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHNTPEAITVSLHCEKNFPARKAESDWDIPLPMGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLKLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 271 VGVIGGGYSKDRKALARRHGILHHSAQRVWQSSG 304
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|56750171|ref|YP_170872.1| histone deacetylase/AcuC/AphA family protein [Synechococcus
elongatus PCC 6301]
gi|56685130|dbj|BAD78352.1| similar to histone deacetylase/AcuC/AphA family protein
[Synechococcus elongatus PCC 6301]
Length = 304
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 86/211 (40%), Gaps = 64/211 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTA+IF DP VFTFSMHC N+P R Q SD DV + G DDA +
Sbjct: 152 ILIVDLDVHQGDGTAWIFQDDPRVFTFSMHCEANFPARNQHSDCDVPLPEGMEDDAYLQQ 211
Query: 468 VALTWVTFLSQRSEKM--RNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+A LSQ + N G+ DP HG L
Sbjct: 212 LAQYLPDLLSQVRPNLVIYNAGV--------DP-------------HGGD-------RLG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ R+ + VL +CV G PV
Sbjct: 244 KLALTDTGLFRR------------------EMQVLETCV---------------RQGYPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
A V GGGYC D + L R ++ RAA+ VY+
Sbjct: 271 AAVLGGGYCEDFNALVYRHSLCQRAASDVYR 301
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D+ R + L W L +R+ I L L + THHAFPD+G+GFC+
Sbjct: 73 DERSLRRIGLPWSPALVERTWIAVGGTILTARLALQQGLACNLAGGTHHAFPDYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+AAR L++ +V ++LIVDLDVHQ
Sbjct: 133 FNDCAIAARLLLQERLVERILIVDLDVHQ 161
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP HRFPM+KF + L+R++V+ +Q +P + VH+
Sbjct: 3 LPLVYHPGYSAPLPSTHRFPMAKFRLLHDRLLRERVV-YPQQFHQPDRPPLEWLTSVHSL 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+Y+ + G E+ + G WS L R
Sbjct: 62 DYIQAYSQGTLDERSLRRIGLPWSPALVERT 92
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L ++LP +L+Q +P+LVIY+AGVDPH D LGKL LTD G
Sbjct: 207 AYLQQLAQYLPDLLSQVRPNLVIYNAGVDPHGGDRLGKLALTDTG 251
>gi|426411628|ref|YP_007031727.1| histone deacetylase superfamily protein [Pseudomonas sp. UW4]
gi|426269845|gb|AFY21922.1| histone deacetylase superfamily protein [Pseudomonas sp. UW4]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 104/252 (41%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMEKFRLLRDHLV-DSGLTRDADLLRPDLCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 SYIDRYMSGDLSREDQRRLGLPWTEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 179
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
+ V GGGY D LA+R I+H +A V++ G
Sbjct: 270 LVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 304
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWTEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|669045|emb|CAA78369.1| Portion of hypothetical protein [Synechococcus sp. PCC 7002]
Length = 278
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHC N+P +KQ SDLD+ + G DD G
Sbjct: 130 ILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDG---- 185
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+ E LL P++ F D G
Sbjct: 186 ---YLQILAHHLED---------LLSQVKPDL-------VFYDAG--------------- 211
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L L+ GLY R+ VL T ++AG PVA V
Sbjct: 212 --------------VDTHVGDR------LGKLAMTNTGLYRRERLVLSTCLAAGYPVACV 251
Query: 589 TGGGYCADIDQL 600
GGGY +I L
Sbjct: 252 IGGGYAKNIHDL 263
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R + L W + QR+ I L L THHAFP +G+GFC++ND+
Sbjct: 55 QRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDL 114
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R + + G+ +++LIVDLDVHQ
Sbjct: 115 AIATRTIQQRGLAQRILIVDLDVHQ 139
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L HL +L+Q KPDLV YDAGVD H D LGKL +T+ G
Sbjct: 185 GYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTG 229
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
M KF L+ D VI + +Q+ +PQ + ELVH +YV + G T K Q+ G
Sbjct: 1 MPKFRLLHGLLLEDGVI-QPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQRRIG 59
Query: 111 FEWSAGLASRVRT 123
WSAG+ R T
Sbjct: 60 LPWSAGVVQRTLT 72
>gi|398879247|ref|ZP_10634346.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM67]
gi|398197075|gb|EJM84064.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM67]
Length = 306
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPPEILALAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 62 AYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPDAVTVS 179
Query: 189 INTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAESDWDIPLPKGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDEG 251
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 NRVLIFDCDV--HQGDGTARILHNTPDAVTVSLHCEKNFPARKAESDWDIPLPKGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 208 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 242
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 243 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V V GGGY D LA+R I+H +A V+ G
Sbjct: 270 VVGVIGGGYSKDRKALARRHGILHHSAQRVWASSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLESGRVNRVLIFDCDVHQ 161
>gi|669044|emb|CAA78368.1| Portion of hypothetical protein [Synechococcus sp. PCC 7002]
Length = 300
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHC N+P +KQ SDLD+ + G DD G
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+ E LL P++ F D G
Sbjct: 208 ---YLQILAHHLED---------LLSQVKPDL-------VFYDAG--------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L L+ GLY R+ VL T ++AG PVA V
Sbjct: 234 --------------VDTHVGDR------LGKLAMTNTGLYRRERLVLSTCLAAGYPVACV 273
Query: 589 TGGGYCADIDQL 600
GGGY +I L
Sbjct: 274 IGGGYAKNIHDL 285
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
P+++ Y +P HRFPM KF L+ D VI + +Q+ +PQ + ELVH
Sbjct: 3 FPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVI-QPEQVYQPQLPDRAWLELVHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV + G T K Q+ G WSAG+ R T
Sbjct: 62 DYVTAYCQGTLTPKAQRRIGLPWSAGVVQRTLT 94
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R + L W + QR+ I L L THHAFP +G+GFC++ND+
Sbjct: 77 QRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R + + G+ +++LIVDLDVHQ
Sbjct: 137 AIATRTIQQRGLAQRILIVDLDVHQ 161
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L HL +L+Q KPDLV YDAGVD H D LGKL +T+ G
Sbjct: 207 GYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTG 251
>gi|398905223|ref|ZP_10652679.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM50]
gi|398174733|gb|EJM62519.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM50]
Length = 329
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV D + + L+ P I L H
Sbjct: 26 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-DSGLARDTDLLRPDLCPPEILALAHDP 84
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 85 AYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 144
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMV 187
P F + DL I+ YL + R + FD D ++H V
Sbjct: 145 AHYDHPAGF---CIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAITV 201
Query: 188 GINTQ--------------PV------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
++ + P+ + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 202 SLHCEKNFPARKAESDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 261
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 262 DDALGYLKLTDEG 274
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 79/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 174 RVLIFDCDV--HQGDGTARILHNTPEAITVSLHCEKNFPARKAESDWDIPLPMGMGDADY 231
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 232 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 266
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 267 YLKLTDEGVA---------------------------------ARDESVMRHCLGRDIPV 293
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V++ G
Sbjct: 294 VGVIGGGYSKDRKALARRHGILHHSAQRVWQSSG 327
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 100 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 159
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 160 AVISHYLLESGRVNRVLIFDCDVHQ 184
>gi|398910038|ref|ZP_10654851.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM49]
gi|398186870|gb|EJM74230.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM49]
Length = 325
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF ++LV + + + L+ P+ I L H
Sbjct: 22 LPLIYHEDYSPEFPADHRFPMDKFRLLRDHLV-NSGLTRDADLLRPELCPADILALAHDP 80
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G W+ LA R + + H +A +L
Sbjct: 81 SYIERYMSGELSREDQRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 140
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 141 --AHYDYPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAVTVS 198
Query: 189 I--------------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ N + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 199 LHCEKNFPARKAESDWDIPLPNGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 258
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 259 DALGYLKLTDEG 270
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + G DA
Sbjct: 169 NRVLIFDCDV--HQGDGTARILHNTPEAVTVSLHCEKNFPARKAESDWDIPLPNGMGDAD 226
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL L P++ + AG + D AL
Sbjct: 227 YLKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDAL 261
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
L G+ RD V+ + IP
Sbjct: 262 GYLKLTDEGVA---------------------------------ARDESVMRHCLGRDIP 288
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
+ V GGGY D LA+R I+H +A V++ G
Sbjct: 289 LVGVIGGGYSKDRQALARRHGILHHSAQRVWQSSG 323
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 96 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 155
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 156 AVISHYLLESGRVNRVLIFDCDVHQ 180
>gi|359780001|ref|ZP_09283228.1| histone deacetylase superfamily protein [Pseudomonas
psychrotolerans L19]
gi|359372617|gb|EHK73181.1| histone deacetylase superfamily protein [Pseudomonas
psychrotolerans L19]
Length = 308
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 90/218 (41%), Gaps = 66/218 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ + + GDGTA I + P T S+HC NYP RK SD D+ + G DDAG
Sbjct: 153 RVLILDCDV--HQGDGTARILAEVPDAVTVSLHCATNYPARKAQSDWDIPLPRGLDDAGY 210
Query: 466 RTV---ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
V AL ++ L Q + + G+ +++R D G+ + D
Sbjct: 211 LRVLDDALGYLLPLHQPDVVLYDAGV----------DVHR--------DDALGYLELTDA 252
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAG 582
LAA RD +VL ++A
Sbjct: 253 GLAA-------------------------------------------RDSFVLRRCLAAD 269
Query: 583 IPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
IPV V GGGY AD LA+R I+H AT V+ E GL
Sbjct: 270 IPVVGVIGGGYSADRLALARRHGILHHTATQVWHELGL 307
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L +R+ + + L L + THHA D+ AGFC+ ND+
Sbjct: 79 QRQLGLPWSEALVRRTIRAVGGSLLTLELALRHGLACHLAGGTHHAHHDYPAGFCIFNDL 138
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ A L+ G +VLI+D DVHQ
Sbjct: 139 AILALSLLESGRAGRVLILDCDVHQ 163
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRFPM KF +L ++ + P+ + + L H
Sbjct: 5 LPLVYHEDYSPPFPAGHRFPMEKFRLLHEHLSASGIL-GADNWQRPELCPDELLALAHAP 63
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+Y+ F G+ Q+ G WS L R
Sbjct: 64 DYIQAFKAGELPPPLQRQLGLPWSEALVRR 93
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY L + L +L +PD+V+YDAGVD H+ D LG L LTD G
Sbjct: 208 AGYLRVLDDALGYLLPLHQPDVVLYDAGVDVHRDDALGYLELTDAG 253
>gi|119468440|ref|ZP_01611531.1| putative histone deacetylase family protein [Alteromonadales
bacterium TW-7]
gi|119447948|gb|EAW29213.1| putative histone deacetylase family protein [Alteromonadales
bacterium TW-7]
Length = 302
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 107/257 (41%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ + +I L +P S ELVH
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFAMSKFANLYTHVKKLGLI--GNNLTQPVLGSPEPLELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
Y+H +N + +K + G WSA L +R T P T H IA +L
Sbjct: 64 DNYIHDLWNNRLDDKAMRRIGLPWSAQLMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQ--------RRPVFFDI--------AAVLADL-- 182
FD + C+ L F Q + FD+ AA+LA
Sbjct: 124 H--AHFDFGSG----YCMVNDLAFATQTLINSGEVTNVLIFDLDVHQGDGTAAMLAHQPY 177
Query: 183 -----IH-------------FMVGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGV 223
IH +G+ N Y A + + L +L + P LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDIGLANHMQDVEYLAIVDDTLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q+D LGKL+++ G
Sbjct: 238 DIWQNDGLGKLDISWDG 254
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 58/199 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ L + GDGTA + P +T S+HC +N+PFRK SDLD+ + D
Sbjct: 155 VLIFDLDVHQGDGTAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQD------ 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
V +L+ + + +LL+ +P + + AG + + L
Sbjct: 209 ----VEYLAIVDDTLS------YLLKELNPSLVLYD---------AGVDIWQNDGLGKLD 249
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ GI + RD+ VL + IPVATV
Sbjct: 250 ISWDGIAK---------------------------------RDHLVLKRCLEHNIPVATV 276
Query: 589 TGGGYCADIDQLAQRQTII 607
GGGY D +LAQR I+
Sbjct: 277 IGGGYDKDHLRLAQRHGIV 295
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
DD R + L W L R+ + L L + THHA D G+G+C+
Sbjct: 76 DDKAMRRIGLPWSAQLMARTFTAPQGTLQTARLALKHGIACHLAGGTHHAHFDFGSGYCM 135
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+A A + LI G V VLI DLDVHQ
Sbjct: 136 VNDLAFATQTLINSGEVTNVLIFDLDVHQ 164
>gi|1075598|pir||B47050 glnA 3'-region hypothetical protein - Synechococcus sp
gi|580726|emb|CAA78367.1| Portion of hypothetical protein [Synechococcus sp. PCC 7002]
Length = 310
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHC N+P +KQ SDLD+ + G DD G
Sbjct: 162 ILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDG---- 217
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+ E LL P++ F D G
Sbjct: 218 ---YLQILAHHLED---------LLSQVKPDL-------VFYDAG--------------- 243
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L L+ GLY R+ VL T ++AG PVA V
Sbjct: 244 --------------VDTHVGDR------LGKLAMTNTGLYRRERLVLSTCLAAGYPVACV 283
Query: 589 TGGGYCADIDQL 600
GGGY +I L
Sbjct: 284 IGGGYAKNIHDL 295
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
P+++ Y +P HRFPM KF L+ D VI + +Q+ +PQ + ELVH
Sbjct: 13 FPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVI-QPEQVYQPQLPDRAWLELVHEP 71
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV + G T K Q+ G WSAG+ R T
Sbjct: 72 DYVTAYCQGTLTPKAQRRIGLPWSAGVVQRTLT 104
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R + L W + QR+ I L L THHAFP +G+GFC++ND+
Sbjct: 87 QRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDL 146
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R + + G+ +++LIVDLDVHQ
Sbjct: 147 AIATRTIQQRGLAQRILIVDLDVHQ 171
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L HL +L+Q KPDLV YDAGVD H D LGKL +T+ G
Sbjct: 217 GYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTG 261
>gi|392538515|ref|ZP_10285652.1| histone deacetylase [Pseudoalteromonas marina mano4]
Length = 302
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 108/257 (42%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ + ++ L +P S ELVH
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFAMSKFANLYAHVKKLGLV--GNNLTQPVLGSPEPLELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
Y+H +N + +K + G WSA L +R T P T H IA +L
Sbjct: 64 DNYIHDLWNNRLDDKAMRRIGLPWSAQLMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQ--------RRPVFFDI--------AAVLADL-- 182
FD + C+ L F Q + FD+ AA+LA
Sbjct: 124 H--AHFDFGSG----YCMVNDLAFTTQTLINSGEVTNVLIFDLDVHQGDGTAAMLAHQPY 177
Query: 183 -----IH-------------FMVGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGV 223
IH +G+ N + Y A + + L +L + P LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDIGLANHMQDAEYLAIVDDTLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q+D LGKL+++ G
Sbjct: 238 DIWQNDGLGKLDISWDG 254
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 58/199 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ L + GDGTA + P +T S+HC +N+PFRK SDLD+ + DA
Sbjct: 155 VLIFDLDVHQGDGTAAMLAHQPYAYTCSIHCEKNFPFRKSASDLDIGLANHMQDA----- 209
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L+ + + +LL+ +P + + AG + + L
Sbjct: 210 -----EYLAIVDDTLS------YLLKELNPSLVLYD---------AGVDIWQNDGLGKLD 249
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ GI ++ D+ VL + IPVATV
Sbjct: 250 ISWDGIAKR---------------------------------DHLVLKRCLEHNIPVATV 276
Query: 589 TGGGYCADIDQLAQRQTII 607
GGGY D +LAQR I+
Sbjct: 277 IGGGYDKDHLRLAQRHGIV 295
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
DD R + L W L R+ + L L + THHA D G+G+C+
Sbjct: 76 DDKAMRRIGLPWSAQLMARTFTAPQGTLQTARLALKHGIACHLAGGTHHAHFDFGSGYCM 135
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+A + LI G V VLI DLDVHQ
Sbjct: 136 VNDLAFTTQTLINSGEVTNVLIFDLDVHQ 164
>gi|220926539|ref|YP_002501841.1| histone deacetylase superfamily protein [Methylobacterium nodulans
ORS 2060]
gi|219951146|gb|ACL61538.1| histone deacetylase superfamily [Methylobacterium nodulans ORS
2060]
Length = 298
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 94/250 (37%), Gaps = 42/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ YE LP HRFPM K+ + LV ++ P+ L H
Sbjct: 2 LPVVFHPAYEAGLPDGHRFPMRKYGRLAEILVERGLV--PNGFARPEPAGAGTVALAHDP 59
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQ---------- 140
YV + G + G AG+A R T + A
Sbjct: 60 FYVEQVLTGTVPRAIETAIGLPVDAGVARRALASAGGTLLAARLALAGGLAGSTAGGSHH 119
Query: 141 -RRP------VFFDIA-AVLA----DLICIAVYLTFFLQRRPVFFDIAAVLADLIHF-MV 187
RR VF D+A A LA I A+ + + + D A DL F M
Sbjct: 120 GRRARGGGFCVFNDVAVAALALHREGTIRRALIIDLDVHQGDGTADCLAAEPDLFTFSMH 179
Query: 188 GINTQPVS-----------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
G P GY A L +H+P +L PDLV Y+AGVDPH+ D
Sbjct: 180 GEKNYPADKVPGDLDIGLPDGLDDDGYLAVLHQHVPRLLDALAPDLVFYNAGVDPHRDDR 239
Query: 231 LGKLNLTDHG 240
LG+L LTD G
Sbjct: 240 LGRLALTDAG 249
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 79/206 (38%), Gaps = 62/206 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
RALI++ L + GDGTA +P +FTFSMH +NYP K DLD+ + G DD G
Sbjct: 149 RALIID--LDVHQGDGTADCLAAEPDLFTFSMHGEKNYPADKVPGDLDIGLPDGLDDDG- 205
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMAL 524
++ L Q + LL P++ ++ D G + D L
Sbjct: 206 ------YLAVLHQHVPR---------LLDALAPDLVFYNAGVDPHRDDRLGRLALTDAGL 250
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
AAR D V TR +P
Sbjct: 251 AAR--------------DRHVIGETRRRGIP----------------------------- 267
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRA 610
+A V GGGY ADID LA R ++ A
Sbjct: 268 LAAVIGGGYAADIDALAARHALVFEA 293
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HH G GFC+ ND+A+AA L R G +R+ LI+DLDVHQ
Sbjct: 116 GSHHGRRARGGGFCVFNDVAVAALALHREGTIRRALIIDLDVHQ 159
>gi|395647111|ref|ZP_10434961.1| putative histone deacetylase family protein [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 306
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P +HRFPM KF ++LV + S L+ P I L H
Sbjct: 3 LPLIYHDDYSPEFPADHRFPMDKFRLLRDHLVSSGLTQDS-HLLRPALCPPEILALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 GYIERYMSGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD----LIH-----FMVG 188
+D A + DL I+ YL + R + FD D ++H V
Sbjct: 122 --AHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAITVS 179
Query: 189 INTQ---PVSGYQATLKEHLPGILAQ-----------------FKPDLVIYDAGVDPHQH 228
++ + P Q+ LP +A ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAQSDWDIPLPMGMADADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG L LTD G
Sbjct: 240 DALGYLKLTDAG 251
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 78/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILHDTPDAITVSLHCEKNFPARKAQSDWDIPLPMGMADADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLKLTDAGVA---------------------------------ARDESVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V+ G
Sbjct: 271 MGVIGGGYSKDRPALARRHGILHHSAQRVWTSSG 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDYPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLASGRVNRVLIFDCDVHQ 161
>gi|442609735|ref|ZP_21024469.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441748751|emb|CCQ10531.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 307
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 110/253 (43%), Gaps = 48/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y + PNHRF MSKF+ + + + ++ L +P+ + S E VH +
Sbjct: 12 LPLVYHSNYSFSFDPNHRFVMSKFANLYAEVKKMGLV--GNNLYQPELGAPSRLETVHCE 69
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQR 141
Y+ ++ + +K + G WS L +R T P+ T H IA +L
Sbjct: 70 NYLWDLWHDRLDDKAMRRIGLPWSVPLMARTFTAPLGTLKTAELALNHGIACHLAGGTHH 129
Query: 142 RPVFF--------DIAAVLADLIC---IAVYLTFFL------------QRRPVFFDIA-- 176
F D+A +LI + L F L Q P F +
Sbjct: 130 AHYDFGSGFCMVNDLAFTAHELINAGKVHNVLIFDLDVHQGDGTAAMCQHNPYIFTCSIH 189
Query: 177 --------AVLADLIHFMVGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
V +DL +G+ N + Y A + E L G+L PD+V+YDAGVD +
Sbjct: 190 CEKNFPFRKVSSDLD---IGLPNHIQDAEYLAIVHETLEGLLQDVNPDIVLYDAGVDVWE 246
Query: 228 HDELGKLNLTDHG 240
HD LGKL++T G
Sbjct: 247 HDGLGKLDITWQG 259
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 60/203 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H LI + L + GDGTA + +P +FT S+HC +N+PFRK SDLD+ + DA
Sbjct: 158 HNVLIFD--LDVHQGDGTAAMCQHNPYIFTCSIHCEKNFPFRKVSSDLDIGLPNHIQDA- 214
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L+ E + LL+ +P+I + AG
Sbjct: 215 ---------EYLAIVHETLEG------LLQDVNPDIVLYD---------AG--------- 241
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+DV +H L L G+ RD VL T G+P
Sbjct: 242 ------------------VDVWEHD------GLGKLDITWQGIEKRDALVLKTCQQYGVP 277
Query: 585 VATVTGGGYCADIDQLAQRQTII 607
VATV GGGY +D +LA+R I+
Sbjct: 278 VATVIGGGYDSDHLRLAKRHAIV 300
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 461 DDAGNRTVALTWVTFLSQRS-----------EKMRNNGIFLFLLRLSDPEINRFSTHHAF 509
DD R + L W L R+ E N+GI L THHA
Sbjct: 81 DDKAMRRIGLPWSVPLMARTFTAPLGTLKTAELALNHGIACHLAG---------GTHHAH 131
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
D G+GFC++ND+A A LI G V VLI DLDVHQ
Sbjct: 132 YDFGSGFCMVNDLAFTAHELINAGKVHNVLIFDLDVHQ 169
>gi|429211647|ref|ZP_19202812.1| histone deacetylase superfamily protein [Pseudomonas sp. M1]
gi|428156129|gb|EKX02677.1| histone deacetylase superfamily protein [Pseudomonas sp. M1]
Length = 306
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y P HRFPM KF +LV D + L+ P+ I L H +
Sbjct: 3 LPLVYHDDYSPPFPAGHRFPMEKFRLLKEHLV-DSGLTSDAALLRPEPCPADILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLA---------SRVRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ +G + +E + G WS LA S + + H +A +L
Sbjct: 62 GYIERYCSGDMSREELRRLGLPWSEALARRTVRAVGGSLLGAELALRHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQR-RPVFFD-----------IAAVLADLIHFM 186
D A+ + DL IA++L + R + FD I +AD I
Sbjct: 122 --AHHDHASGFCIFNDLAVIALHLLASGRAGRVLIFDCDVHQGDGTARILEQVADAITVS 179
Query: 187 VGINTQ--------------PV----SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
+ P+ + Y + E L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPARKAHSDWDIPLPLHMGDADYLRVVDEALDYLLPLYQPDLVLYDAGVDVHKD 239
Query: 229 DELGKLNLTDHG 240
D LG LNLTD G
Sbjct: 240 DALGYLNLTDAG 251
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I ++ T S+HC +N+P RK SD D+ + + DA +L
Sbjct: 160 HQGDGTARILEQVADAITVSLHCEKNFPARKAHSDWDIPLPLHMGDA----------DYL 209
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
E + +LL L P++ +
Sbjct: 210 RVVDEALD------YLLPLYQPDLVLYDA------------------------------- 232
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+DVH+ +L L+ GL RD V++ ++ IPV V GGGY D
Sbjct: 233 -----GVDVHKDD------ALGYLNLTDAGLAARDERVIERCLARDIPVLGVIGGGYDKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V++ GL
Sbjct: 282 RAALARRHGILHHSAQRVWQRLGL 305
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L++R+ + + L L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSEALARRTVRAVGGSLLGAELALRHGLACHLAGGTHHAHHDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A +L+ G +VLI D DVHQ
Sbjct: 138 VIALHLLASGRAGRVLIFDCDVHQ 161
>gi|118589342|ref|ZP_01546748.1| hypothetical protein SIAM614_07353 [Stappia aggregata IAM 12614]
gi|118438042|gb|EAV44677.1| hypothetical protein SIAM614_07353 [Labrenzia aggregata IAM 12614]
Length = 309
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 85/203 (41%), Gaps = 58/203 (28%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
I L + GDGTA IF DP VFTFS+H +NYP RK S LD+ + GT D
Sbjct: 155 IDLDVHQGDGTADIFQGDPNVFTFSLHSEKNYPVRKVPSHLDIGLADGTGDE-------- 206
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+L+ E + + LLR +I F+ AG + L L R
Sbjct: 207 --VYLAILEEVLPD------LLRQGPWDIVFFN---------AGVDPYSGDRLGRLALSR 249
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
G+ R+ D YV++T AG+P+A V GG
Sbjct: 250 EGLWRR---------------------------------DRYVIETVRQAGVPLAGVLGG 276
Query: 592 GYCADIDQLAQRQTIIHRAATHV 614
GY DID+LA R +HR A V
Sbjct: 277 GYSTDIDELADRHVTLHRTARAV 299
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI+H Y LP NHRFPM KF + L+R + + P+ L H
Sbjct: 3 LPIVHHPAYCADLPANHRFPMDKF-RAVAELIRREGLLSDNAFFRPRPAPFEWVALAHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
YV + FN + +K + GF +A R R
Sbjct: 62 AYVDQVFNARVPDKIAREIGFPMREDIALRAR 93
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA HGAGFC+ ND+A+A + L G +R L++DLDVHQ
Sbjct: 118 GSHHARRAHGAGFCVFNDVAVAIKVLQADGAIRTALVIDLDVHQ 161
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+E LP +L Q D+V ++AGVDP+ D LG+L L+ G
Sbjct: 208 YLAILEEVLPDLLRQGPWDIVFFNAGVDPYSGDRLGRLALSREG 251
>gi|87123802|ref|ZP_01079652.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9917]
gi|86168371|gb|EAQ69628.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9917]
Length = 304
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 108/256 (42%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ +Y LP +HRFPM+KF + L+ I + + P I+ E +H +
Sbjct: 3 LPIVYHPRYSTPLPSSHRFPMAKFRLLHDLLLERGWI-RPDAVKRPVSIARRDLERIHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL------ 135
Y F G+ EQ+ G S L R T H IA +L
Sbjct: 62 SYHQAFSRGQLGRAEQRRIGLPNSHALVQRTWLAVGGTLLTARLALRHGIASHLAGGTHH 121
Query: 136 --PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLA-DLIH 184
P + +F D A + AV L +R + D+ AA A D
Sbjct: 122 AHPGYGSGFCIFNDCA------VTAAVLLAEGAVKRLMVVDLDVHQGDGTAACFATDPRV 175
Query: 185 FMVGINTQ--------------PVSG------YQATLKEHLPGILAQFKPDLVIYDAGVD 224
F + ++ Q P++ Y +T+ + LP L +PDLV+Y+AGVD
Sbjct: 176 FTLSVHAQSNFPLRKGRSDLDLPLADGTDDATYLSTIGDRLPDRLDTVRPDLVLYNAGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
PH++D LG+L L+D G
Sbjct: 236 PHRNDRLGRLALSDEG 251
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 90/212 (42%), Gaps = 59/212 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M + L + GDGTA F DP VFT S+H N+P RK SDLD+ + GTDDA
Sbjct: 152 LMVVDLDVHQGDGTAACFATDPRVFTLSVHAQSNFPLRKGRSDLDLPLADGTDDA----- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T+LS +++ +R T PD L N
Sbjct: 207 -----TYLSTIGDRL----------------PDRLDT--VRPD----LVLYN-------- 231
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H++ R L L+ GL RD VLD + IPVATV
Sbjct: 232 ------------AGVDPHRNDR------LGRLALSDEGLLHRDRLVLDACLRRNIPVATV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GGGY A ++ L QR +I RAA + GL
Sbjct: 274 IGGGYDA-LEPLVQRHALIIRAALEQARLHGL 304
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA P +G+GFC+ ND A+ A L+ G V+++++VDLDVHQ
Sbjct: 118 GTHHAHPGYGSGFCIFNDCAVTAAVLLAEGAVKRLMVVDLDVHQ 161
>gi|148242804|ref|YP_001227961.1| histone deacetylase family protein [Synechococcus sp. RCC307]
gi|147851114|emb|CAK28608.1| Histone deacetylase family protein [Synechococcus sp. RCC307]
Length = 306
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 47/255 (18%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ +P+++ Y LP +HRFPM+KF + L DK + + +Q+ +P ELVH
Sbjct: 3 IRVPLVYHPLYSAPLPSSHRFPMAKFRQLRQCLA-DKGLAQEQQVHQPLPCPRRWLELVH 61
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR--------VRTDPVP-THVIAVYL---- 135
+ Y F G+ + Q+ G + L R +RT + H +A +L
Sbjct: 62 PRRYHQAFARGELDRQAQRRIGLPATQPLVQRTWLSVGGTLRTAQLALEHGMACHLAGGT 121
Query: 136 ----PFFLQRRPVFFDIAAVLADLICIAVYLTFFL---------------QRRPVFFDIA 176
P + +F DIA + L+ + + P F +
Sbjct: 122 HHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLDVHQGDATAAIFTGEPRVFTFS 181
Query: 177 AVLA----------DL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
A A DL + G+ Q Y ++ + LP +L Q +PDLV+Y+AGVDP
Sbjct: 182 AHAASNFPSRKQSSDLDLPLADGLEDQ---AYLQSVGDVLPALLDQQQPDLVLYNAGVDP 238
Query: 226 HQHDELGKLNLTDHG 240
H+ D LGKL L+D G
Sbjct: 239 HRADRLGKLALSDQG 253
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPD+G+GFC+ ND+A+ A L++ G+V K+++VDLDVHQ
Sbjct: 120 GTHHAFPDYGSGFCIFNDIAVTASVLLQQGLVNKLMVVDLDVHQ 163
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+M + L + GD TA IF +P VFTFS H N+P RKQ SDLD+ + G +D
Sbjct: 154 LMVVDLDVHQGDATAAIFTGEPRVFTFSAHAASNFPSRKQSSDLDLPLADGLED 207
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD+ V D + IPVA+V GGGY +D L +R ++ RAA + GL
Sbjct: 253 GLLQRDHLVFDACLRRNIPVASVIGGGY-DTMDALVERHALVFRAAADQARLHGL 306
>gi|416228420|ref|ZP_11627574.1| histone deacetylase family protein [Moraxella catarrhalis 46P47B1]
gi|326563755|gb|EGE14006.1| histone deacetylase family protein [Moraxella catarrhalis 46P47B1]
Length = 301
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 83/193 (43%), Gaps = 58/193 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GTDD
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K+ +N DP++ + AG
Sbjct: 206 --AYLTILGKTLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQLA 601
GGGY DI+ +A
Sbjct: 273 MGGGYSPDIETVA 285
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 99/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L + LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTDDNAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|416241930|ref|ZP_11633064.1| histone deacetylase family protein [Moraxella catarrhalis BC7]
gi|326571491|gb|EGE21506.1| histone deacetylase family protein [Moraxella catarrhalis BC7]
Length = 301
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 83/193 (43%), Gaps = 58/193 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GTDD
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K+ +N DP++ + AG
Sbjct: 206 --AYLTILGKTLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQLA 601
GGGY DI+ +A
Sbjct: 273 MGGGYSPDIETVA 285
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 99/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L + LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTDDNAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|399008851|ref|ZP_10711308.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM17]
gi|398114713|gb|EJM04517.1| deacetylase, histone deacetylase/acetoin utilization protein
[Pseudomonas sp. GM17]
Length = 306
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 100/253 (39%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPREILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLA---------SRVRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G W+ LA S + + H +A +L
Sbjct: 62 GYIERYMAGELSREDQRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLAD--------------- 181
P F + DL I+ YL + R + FD D
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLEAGRVGRVLIFDCDVHQGDGTARILEHTPDAVTV 178
Query: 182 LIHFMVGINTQPVSG--------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+H + S Y + + L +L ++PDLV+YDAGVD HQ
Sbjct: 179 SLHCEKNFPARKASSDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHQ 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLKLTDQG 251
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 75/203 (36%), Gaps = 58/203 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + P T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 160 HQGDGTARILEHTPDAVTVSLHCEKNFPARKASSDWDIPLPMGMGDADYLKVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL L P++ +
Sbjct: 213 ---------DDALNYLLPLYQPDLVLYDA------------------------------- 232
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+DVHQ +L L G+ RD V+ + IPV V GGGY D
Sbjct: 233 -----GVDVHQDD------ALGYLKLTDQGVAARDEQVMRHCLGRDIPVLGVIGGGYSKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERG 619
LA+R I+H +A V+ G
Sbjct: 282 RQALARRHGILHHSAQRVWTSLG 304
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLEAGRVGRVLIFDCDVHQ 161
>gi|88859197|ref|ZP_01133837.1| putative histone deacetylase family protein [Pseudoalteromonas
tunicata D2]
gi|88818214|gb|EAR28029.1| putative histone deacetylase family protein [Pseudoalteromonas
tunicata D2]
Length = 302
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 48/254 (18%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y PNHRF MSKF+ + +LV+ ++ + + +P + S S E VH
Sbjct: 6 HLPLVYHPNYSFEFDPNHRFVMSKFADLYQHLVQTGYVNHN--IFKPLRASISELEKVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
Y+H+ +K + G WS L +R + T + IA +L
Sbjct: 64 SRYLHQLNQNTLDQKASRRIGLPWSEQLMARTFIEAQGTLLTAQLALKNGIACHLAGGTH 123
Query: 141 RRPVFF--------DIAAVLADLI---CIAVYLTF------------FLQRRPVFFDIA- 176
F D+A A LI + L F LQ P F +
Sbjct: 124 HAHYDFGSGFCMVNDLAYTAASLIDSGDVTNVLIFDLDVHQGDGTAAILQHHPYIFTCSI 183
Query: 177 ---------AVLADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
+DL I +G+ Y A ++ L ++A P LV+YDAGVD
Sbjct: 184 HCEKNFPFRKSQSDLDIGLAIGMQD---DAYLALIESTLRSLIADLNPSLVLYDAGVDIW 240
Query: 227 QHDELGKLNLTDHG 240
QHD LGKL+++ G
Sbjct: 241 QHDSLGKLDISWQG 254
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ L + GDGTA I P +FT S+HC +N+PFRK SDLD+ + +G D
Sbjct: 155 VLIFDLDVHQGDGTAAILQHHPYIFTCSIHCEKNFPFRKSQSDLDIGLAIGMQD 208
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D +R + L W L R+ + L L + + THHA D G+GFC+
Sbjct: 76 DQKASRRIGLPWSEQLMARTFIEAQGTLLTAQLALKNGIACHLAGGTHHAHYDFGSGFCM 135
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+A A LI G V VLI DLDVHQ
Sbjct: 136 VNDLAYTAASLIDSGDVTNVLIFDLDVHQ 164
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQ 602
+D+ QH SL L G+ RD+ VL G+PVATV GGGY D +LAQ
Sbjct: 237 VDIWQHD------SLGKLDISWQGIEKRDHTVLSVCQRIGVPVATVIGGGYDKDPQRLAQ 290
Query: 603 RQTIIHRAAT 612
R +I+ + A
Sbjct: 291 RHSIVVQQAA 300
>gi|384250439|gb|EIE23918.1| Arginase/deacetylase, partial [Coccomyxa subellipsoidea C-169]
Length = 304
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 101/253 (39%), Gaps = 43/253 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L H++ +E L HRFPMSK+ T L D + ++ E Q +E L H
Sbjct: 6 LLAFHSDNHEVPLEEKHRFPMSKYRLTRLALEGDATVKDLLEIREAPQATEEDLALAHDP 65
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT-----HVIAVYLPF-------- 137
YV +FF G+ KE + GF WS GL R R T ++ LPF
Sbjct: 66 GYVRRFFEGQLGPKEMRSIGFPWSEGLVRRARASAGGTLAATRALLEWQLPFTANIAGGT 125
Query: 138 ---FLQRRP---VFFDIA-----AVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFM 186
F R VF DIA A+ + I + + + + I A + F
Sbjct: 126 HHAFAGRGEGFCVFNDIAVSARMAMTEEGIEKVLVIDLDVHQGNGTSAIFAQDDRVTTFD 185
Query: 187 VG------INTQPVSGYQATLK-------------EHLPGILAQFKPDLVIYDAGVDPHQ 227
V T+ S Y LK E LP + A+ +P LV + AGVD +
Sbjct: 186 VHGDKNYPWKTRSKSTYDVALKDATRDEEYLALLREWLPRLFAEHRPQLVFFQAGVDAME 245
Query: 228 HDELGKLNLTDHG 240
D G+L+LT G
Sbjct: 246 KDSFGRLSLTRKG 258
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF G GFC+ ND+A++AR + + KVL++DLDVHQ
Sbjct: 124 GTHHAFAGRGEGFCVFNDIAVSARMAMTEEGIEKVLVIDLDVHQ 167
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 61/206 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQC-SDLDVAIDVGTDDAGNRT 467
++ I L + G+GT+ IF +D V TF +H +NYP++ + S DVA+ T D
Sbjct: 158 VLVIDLDVHQGNGTSAIFAQDDRVTTFDVHGDKNYPWKTRSKSTYDVALKDATRDE---- 213
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHH-AFPDHGAGFCLMNDMALAA 526
+L LLR P + F+ H AG M +
Sbjct: 214 --------------------EYLALLREWLPRL--FAEHRPQLVFFQAGVDAMEKDSFGR 251
Query: 527 RYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVA 586
L R G++ + + VLS C + G+P
Sbjct: 252 LSLTRKGLLER------------------NEMVLSKC---------------LQEGVPTV 278
Query: 587 TVTGGGYCADIDQLAQRQTIIHRAAT 612
GGGY ID+ + ++R
Sbjct: 279 ITMGGGYSRPIDKTVEAHADVYRTGA 304
>gi|13474726|ref|NP_106295.1| hypothetical protein mll5679 [Mesorhizobium loti MAFF303099]
gi|14025481|dbj|BAB52081.1| mll5679 [Mesorhizobium loti MAFF303099]
Length = 300
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 85/205 (41%), Gaps = 60/205 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN-RT 467
I+ + L + GDGTA I +P VFTFSMH RNYP RK SDLD+A+ GT DA R
Sbjct: 152 ILVVDLDVHQGDGTADILSDEPGVFTFSMHGERNYPVRKIASDLDIALPDGTGDAAYLRR 211
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
+A T L + S + R + +F + AG
Sbjct: 212 LA----TILPELSARARWDIVF----------------------YNAG------------ 233
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
+DVH R L L+ GL RD V+ + GIPV
Sbjct: 234 ---------------VDVHAEDR------LGRLALSNGGLRARDEMVIGHFRALGIPVCG 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAAT 612
V GGGY D+ LA R I+ A+
Sbjct: 273 VIGGGYSTDVPALASRHAILFEVAS 297
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC ND+A+A+ L+ G + +L+VDLDVHQ
Sbjct: 118 GSHHARRAQGAGFCTFNDVAVASLVLLDEGAAQNILVVDLDVHQ 161
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I+H Y+ NHRFPMSK+ L R + + L + S +L H
Sbjct: 3 LQIVHHPDYDAGFATNHRFPMSKYPLLMEAL-RARGLASPDALNTTEPAPASWLKLAHAA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGF 111
+YV + + EK ++ GF
Sbjct: 62 DYVDQVISCSVPEKIEREIGF 82
>gi|416247314|ref|ZP_11635620.1| histone deacetylase family protein [Moraxella catarrhalis BC8]
gi|326569907|gb|EGE19957.1| histone deacetylase family protein [Moraxella catarrhalis BC8]
Length = 301
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 83/192 (43%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FS+H +NYPF K SDLD+ +D GTDD
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSIHGKKNYPFYKPPSDLDIELDDGTDDN----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T LS+ K ++R DP++ + AG
Sbjct: 206 --AYLTILSETLPK---------IIREFDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSMAGCYERDKLVLTTAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + + G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSIHGKKNYPFYKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L E LP I+ +F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTDDNAYLTILSETLPKIIREFDPDMLFYQAGVDVLATDKLGKLSLSMAG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|94501715|ref|ZP_01308229.1| putative histone deacetylase family protein [Oceanobacter sp.
RED65]
gi|94426115|gb|EAT11109.1| putative histone deacetylase family protein [Oceanobacter sp.
RED65]
Length = 305
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 106/251 (42%), Gaps = 41/251 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDK-VIDKSKQLIEPQQISESIAELVHT 89
L +I+ Y C P NHRF MSKF + + R+ V+ +++PQ S +VH
Sbjct: 2 LKLIYHPNYSCDFPENHRFVMSKFVRLYEVATREGWVLADGSNVLQPQAASLEDLSIVHD 61
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFFLQ 140
Y++ K + G WS GL R T P T + +A +L
Sbjct: 62 ATYLNGLVGNDIDPKAWRRIGLPWSQGLVDRTLTAPNGTLLAARTALQEGLACHLAGGTH 121
Query: 141 RRPVFFDIA-AVLADLICIAVYLTFFLQ-RRPVFFD--------IAAVLA-DLIHFMVGI 189
F ++ DL A L + +R + FD AA+L D F I
Sbjct: 122 HAHRDFGSGFCMINDLAYAAKTLVANNEVQRILIFDCDVHQGDGTAAILENDADIFTCSI 181
Query: 190 NTQ---PVSGYQATL----------KEHLPGILAQF-------KPDLVIYDAGVDPHQHD 229
+ + P Q+ L KE++ +++ KPDLV+YDAGVD QHD
Sbjct: 182 HCEKNFPFRKSQSDLDVGLDLYLQDKEYIDVVMSTLQDLLETVKPDLVLYDAGVDVWQHD 241
Query: 230 ELGKLNLTDHG 240
+LGKL++T G
Sbjct: 242 DLGKLDITWQG 252
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDV 458
+ GDGTA I + D +FT S+HC +N+PFRK SDLDV +D+
Sbjct: 161 HQGDGTAAILENDADIFTCSIHCEKNFPFRKSQSDLDVGLDL 202
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L R+ N + L + + THHA D G+GFC++ND+A
Sbjct: 79 RRIGLPWSQGLVDRTLTAPNGTLLAARTALQEGLACHLAGGTHHAHRDFGSGFCMINDLA 138
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
AA+ L+ + V+++LI D DVHQ
Sbjct: 139 YAAKTLVANNEVQRILIFDCDVHQ 162
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQ 602
+DV QH L L G++ RD +V+ T + IP+ TV GGGY D +LA+
Sbjct: 235 VDVWQH------DDLGKLDITWQGIHDRDEHVIKTCLLKHIPIMTVIGGGYDKDHQRLAE 288
Query: 603 RQTII 607
R +I+
Sbjct: 289 RHSIV 293
>gi|428176853|gb|EKX45735.1| hypothetical protein GUITHDRAFT_70985 [Guillardia theta CCMP2712]
Length = 342
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 103/246 (41%), Gaps = 59/246 (23%)
Query: 45 PNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAE-------LVHTKEYVHKFF 97
P HRF MSKF N VI+ + L E ++ E A LVH +++V F
Sbjct: 42 PKHRFVMSKFGGMRN------VIESTMHLREEVEVVEDFAPVSASTLCLVHDRKFVEDFC 95
Query: 98 NGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPV----------FFD 147
GK + + G WS L R + T + A L+RR F D
Sbjct: 96 EGKMDPRAMRRIGLPWSPSLVRRTLLEVQGTTIAA---RLALERRLACNAAGGTHHSFAD 152
Query: 148 IAA---VLADLICIAVYL-TFFLQRRPVFFDI--------AAVLA---DLIHFMVGINTQ 192
+ + DL A +L L +R + D+ AA+ A D++ V +
Sbjct: 153 YGSGFTIFNDLAVTAAWLRDERLAKRVLILDLDVHQGDGTAAIHAGNPDVMTVSVHCESN 212
Query: 193 -PVSGYQATL-----------------KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
P Q+ L + LP +LA FKPD+V+YDAGVD H DELGKL
Sbjct: 213 FPFRKQQSDLDVALEDEVGDRDYLLRLSQFLPSLLADFKPDIVLYDAGVDVHADDELGKL 272
Query: 235 NLTDHG 240
+++D G
Sbjct: 273 HISDQG 278
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 60/208 (28%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ R LI++ L + GDGTA I +P V T S+HC N+PFRKQ SDLDVA++ D+
Sbjct: 176 AKRVLILD--LDVHQGDGTAAIHAGNPDVMTVSVHCESNFPFRKQQSDLDVALE---DEV 230
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
G+R L FL LL P+I + AG + D
Sbjct: 231 GDRDYLLRLSQFLPS-------------LLADFKPDIVLYD---------AGVDVHADDE 268
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
L ++ G + D DV+ VL T ++ I
Sbjct: 269 LGKLHISDQG------LFDRDVY---------------------------VLRTCLAMKI 295
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAA 611
PVATV GGGY D LA+R II +AA
Sbjct: 296 PVATVIGGGYDRDHLVLAKRHAIIVQAA 323
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH+F D+G+GF + ND+A+ A +L + ++VLI+DLDVHQ
Sbjct: 145 GTHHSFADYGSGFTIFNDLAVTAAWLRDERLAKRVLILDLDVHQ 188
>gi|307105160|gb|EFN53410.1| hypothetical protein CHLNCDRAFT_25722 [Chlorella variabilis]
Length = 330
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 60/219 (27%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
+ R LI++ L + GDGTA IF VFT S+H N+P RKQ S LD+A+ GT
Sbjct: 172 RRCQRILILD--LDVHQGDGTAAIFSGRQDVFTLSVHAASNFPARKQASHLDIALPDGTA 229
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
D +L +E + +L+ P++ + AG D
Sbjct: 230 DN----------EYLRVVAESLSG------VLQAFRPDLVLYD---------AGVDPHAD 264
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
AL L G+ R+ L+V LD+ +
Sbjct: 265 DALGRLALSDAGLWRRELLV---------------------------------LDSCLGM 291
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
G+PVA GGGY AD++ LA+R +HRAA +++E GL
Sbjct: 292 GVPVAAYVGGGYHADLEVLARRHCWLHRAAAQMWEEHGL 330
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D+G+GFC++ND+A+ A+ L+ +++LI+DLDVHQ
Sbjct: 143 GTHHAFSDYGSGFCILNDLAITAQLLLHQRRCQRILILDLDVHQ 186
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + E L G+L F+PDLV+YDAGVDPH D LG+L L+D G
Sbjct: 233 YLRVVAESLSGVLQAFRPDLVLYDAGVDPHADDALGRLALSDAG 276
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 32 PIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQI-SESIAELVHT 89
P+++ Y L P HRFPM+ FS L+ D V+D +Q+ +P + + L H
Sbjct: 24 PVVYHPLYSAPQLAPGHRFPMAVFSTIHRLLLADGVVDP-RQVHQPSALPGRDLLHLAHA 82
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
EYV F G E+ + GF G A+R R
Sbjct: 83 AEYVDAFCGGSLDEQRVRRIGF----GEATRTR 111
>gi|416235331|ref|ZP_11630090.1| histone deacetylase family protein [Moraxella catarrhalis 12P80B1]
gi|326564372|gb|EGE14600.1| histone deacetylase family protein [Moraxella catarrhalis 12P80B1]
Length = 301
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GTDD
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K ++R DP++ + AG
Sbjct: 206 --AYLTILGKTLPK---------IIREFDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L + LP I+ +F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTDDNAYLTILGKTLPKIIREFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|330504953|ref|YP_004381822.1| histone deacetylase superfamily protein [Pseudomonas mendocina
NK-01]
gi|328919239|gb|AEB60070.1| histone deacetylase superfamily protein [Pseudomonas mendocina
NK-01]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 41/266 (15%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRFPM KF ++L+ D + +L P+ + LVH
Sbjct: 3 LPLVYHEDYSPPFPTGHRFPMEKFRLLRDHLI-DSGLTSDAELQRPELCPAEVLALVHCP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLA---------SRVRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ G+ + ++Q+ G WS LA S + + H +A +L
Sbjct: 62 DYIARYMAGELSYEDQRRLGLPWSEALARRTVRAVGGSLLTAELALRHGLACHLAGGTHH 121
Query: 142 RPVFFDIA-AVLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPV----- 194
F + DL IA YL + R + FD D ++ +
Sbjct: 122 AHYDFPSGFCIFNDLAVIARYLLETGRVHRVLIFDCDVHQGDGTARLLENEPDAITVSLH 181
Query: 195 ------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
+ Y + + L +L ++PDLV+YDAGVD HQ D
Sbjct: 182 CEQNFPARKAQSDWDIPLPRGMGDADYLKVVDDTLNYLLPIYQPDLVLYDAGVDVHQDDA 241
Query: 231 LGKLNLTDHGECISSSARISSEAGVD 256
LG L LTD G A + G D
Sbjct: 242 LGYLQLTDAGLAARDEAVLQHCLGRD 267
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 83/216 (38%), Gaps = 60/216 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA + + +P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 HRVLIFDCDV--HQGDGTARLLENEPDAITVSLHCEQNFPARKAQSDWDIPLPRGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL + P++ +
Sbjct: 208 YLKVV----------------DDTLNYLLPIYQPDLVLYDA------------------- 232
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+DVHQ +L L GL RD VL + IP
Sbjct: 233 -----------------GVDVHQDD------ALGYLQLTDAGLAARDEAVLQHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V V GGGY D LA+R I+H +A V+ RGL
Sbjct: 270 VLGVIGGGYSKDHVALARRHGILHHSAARVWAARGL 305
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA D +GFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ARYL+ G V +VLI D DVHQ
Sbjct: 137 AVIARYLLETGRVHRVLIFDCDVHQ 161
>gi|77361149|ref|YP_340724.1| histone deacetylase [Pseudoalteromonas haloplanktis TAC125]
gi|76876060|emb|CAI87282.1| putative histone deacetylase family protein [Pseudoalteromonas
haloplanktis TAC125]
Length = 302
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 105/251 (41%), Gaps = 42/251 (16%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ + ++ L++P + ELVH
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFVMSKFAHLYQHVKQLGLV--GDNLVQPLLGTPEALELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
+ Y+H ++ + EK + G WS L +R T P T H +A +L
Sbjct: 64 ENYIHDLYHNQLDEKAMRRIGLPWSKELMARTFTAPQGTLQTARLALKHGMACHLAGGTH 123
Query: 141 RRPVFF--------DIAAVLADLI---CIAVYLTF------------FLQRRPVFFDIAA 177
F D+A LI + L F LQ +P + +
Sbjct: 124 HAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQPYAYTCSI 183
Query: 178 VLADLIHFM-------VGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
F +G+ N + Y + + L +L + PDLV+YDAGVD Q D
Sbjct: 184 HCEKNFPFRKSPSDLDIGLTNNMQDAEYLGIVDDTLQFLLKELNPDLVLYDAGVDVWQQD 243
Query: 230 ELGKLNLTDHG 240
LGKL+++ G
Sbjct: 244 GLGKLDISWQG 254
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 82/207 (39%), Gaps = 58/207 (28%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
++S ++ L + GDGTA + P +T S+HC +N+PFRK SDLD+ +
Sbjct: 147 IESGEVTNVLIFDLDVHQGDGTAAMLQHQPYAYTCSIHCEKNFPFRKSPSDLDIGLTNNM 206
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DA +L + ++ FLL+ +P++ + AG
Sbjct: 207 QDA----------EYLGIVDDTLQ------FLLKELNPDLVLYD---------AG----- 236
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+DV Q L L G+ RD+ VL +
Sbjct: 237 ----------------------VDVWQQD------GLGKLDISWQGIEQRDHLVLKRCLE 268
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTII 607
PVATV GGGY D +LAQR I+
Sbjct: 269 HNTPVATVIGGGYDRDHQRLAQRHGIV 295
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D+ R + L W L R+ + L L + THHA D G+G+C+
Sbjct: 76 DEKAMRRIGLPWSKELMARTFTAPQGTLQTARLALKHGMACHLAGGTHHAHTDFGSGYCM 135
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+A + LI G V VLI DLDVHQ
Sbjct: 136 VNDLAFTTQTLIESGEVTNVLIFDLDVHQ 164
>gi|421501962|ref|ZP_15948918.1| histone deacetylase superfamily protein [Pseudomonas mendocina
DLHK]
gi|400347246|gb|EJO95600.1| histone deacetylase superfamily protein [Pseudomonas mendocina
DLHK]
Length = 306
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 103/266 (38%), Gaps = 41/266 (15%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRFPM KF ++LV D + +L P+ I L H
Sbjct: 3 LPLVYHEDYSPPFPAGHRFPMEKFRLLRDHLV-DSGLTSDAELQRPELCPAEILALAHCP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ G+ + ++Q+ G WS LA R + + H +A +L
Sbjct: 62 DYIARYMAGELSYEDQRRLGLPWSEALARRTVRAVGGSLLTAELALRHGLACHLAGGTHH 121
Query: 142 RPVFFDIA-AVLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPV----- 194
F + DL IA YL + R + FD D ++ V
Sbjct: 122 AHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDCDVHQGDGTARLLEDEPDAVTVSLH 181
Query: 195 ------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
+ Y + + L +L ++PDLV+YDAGVD H+ D
Sbjct: 182 CEQNFPARKAQSDWDIPLPRGMGDADYLKVVDDTLNYLLPIYQPDLVLYDAGVDVHKDDA 241
Query: 231 LGKLNLTDHGECISSSARISSEAGVD 256
LG L LTD G A + G D
Sbjct: 242 LGYLQLTDAGLAARDEAVLHHCLGRD 267
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 60/216 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA + + +P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 HRVLIFDCDV--HQGDGTARLLEDEPDAVTVSLHCEQNFPARKAQSDWDIPLPRGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL + P++ +
Sbjct: 208 YLKVV----------------DDTLNYLLPIYQPDLVLYDA------------------- 232
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+DVH+ +L L GL RD VL + IP
Sbjct: 233 -----------------GVDVHKDD------ALGYLQLTDAGLAARDEAVLHHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V V GGGY D LA+R I+H +A V+ RGL
Sbjct: 270 VLGVIGGGYSKDHAALARRHGILHHSAARVWAARGL 305
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA D +GFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ARYL+ G V +VLI D DVHQ
Sbjct: 137 AVIARYLLEAGRVHRVLIFDCDVHQ 161
>gi|424842887|ref|ZP_18267512.1| deacetylase, histone deacetylase/acetoin utilization protein
[Saprospira grandis DSM 2844]
gi|395321085|gb|EJF54006.1| deacetylase, histone deacetylase/acetoin utilization protein
[Saprospira grandis DSM 2844]
Length = 300
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 68/183 (37%), Gaps = 71/183 (38%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV--------- 554
THHA+ HG GFCL+ND A+AA YL+ G+ +++LIVDLDVHQ S +
Sbjct: 117 GTHHAYASHGEGFCLLNDFAIAANYLLDQGLAQQILIVDLDVHQGNGSAKIFENEPRVFT 176
Query: 555 -----------------------------PSLTVLSSCVPGLY----------------- 568
P L VL+ C+P L
Sbjct: 177 FSMHAAANYPFRKERSDLDIALPDLMDDGPYLQVLADCLPALLESLRPDMVLYLSGVDVL 236
Query: 569 ----------------MRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
RD +V AG+PVA GGGY + + + +R A
Sbjct: 237 ASDKLGRLGLSLNACAQRDQFVFSCCQKAGVPVAVSMGGGYSPQLRYIIEAHANTYRMAQ 296
Query: 613 HVY 615
+Y
Sbjct: 297 KIY 299
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + G+G+A IF+ +P VFTFSMH NYPFRK+ SDLD+A+ DD
Sbjct: 151 ILIVDLDVHQGNGSAKIFENEPRVFTFSMHAAANYPFRKERSDLDIALPDLMDDG 205
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM K+ L+ + +++ + +PQ I+E H+K+Y
Sbjct: 10 YRYELPQGHRFPMIKYDLLAQQLIYEGCLEE-ENFFQPQPIAEEWILRTHSKDYWDALKE 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRT 123
+ K + GF S L R +
Sbjct: 69 QTISAKAARKIGFPMSEKLVQRSKV 93
>gi|296112749|ref|YP_003626687.1| histone deacetylase [Moraxella catarrhalis RH4]
gi|295920443|gb|ADG60794.1| histone deacetylase family protein [Moraxella catarrhalis BBH18]
Length = 301
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GTDD
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K+ +N DP++ + AG
Sbjct: 206 --AYLTILGKTLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 99/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L + LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTDDNAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|411119985|ref|ZP_11392361.1| deacetylase, histone deacetylase/acetoin utilization protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410710141|gb|EKQ67652.1| deacetylase, histone deacetylase/acetoin utilization protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 305
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 101/253 (39%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ + Y LP HRFPM KF + L+ D+V S+ I P++ E+ ELVH
Sbjct: 3 LPLVYHSNYVVPLPAGHRFPMPKFRMLYELLLADEVAHPSQFHI-PERPPEAWIELVHIP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY---------------- 134
EYV + G K Q+ G WS L +R T + A
Sbjct: 62 EYVRAYCEGTLDAKAQRRIGLPWSPELVNRTCVAVGGTILTAKLALECGIACNTAGGTHH 121
Query: 135 -LPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRP------VFFDIAAVLADLIH 184
P + +F D+A VL L + L L +F D V +H
Sbjct: 122 AFPSYGSGFCIFNDMAIAARVLQQLGLVQQVLIVDLDVHQGDGTAWIFRDDPTVFTFSMH 181
Query: 185 FMVGINTQPVSGYQATLKEHLP---------GILAQFKPDL--------VIYDAGVDPHQ 227
V P + Q+ L LP L + PDL VIYDAGVD H
Sbjct: 182 CEVNF---PGTKQQSDLDVPLPEGMEDDEYLQTLDTYLPDLLSQVKPDLVIYDAGVDAHM 238
Query: 228 HDELGKLNLTDHG 240
D LGKL LTD G
Sbjct: 239 GDRLGKLALTDSG 251
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA+IF DP VFTFSMHC N+P KQ SDLDV + G +D
Sbjct: 152 VLIVDLDVHQGDGTAWIFRDDPTVFTFSMHCEVNFPGTKQQSDLDVPLPEGMED---DEY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T T+L +++ + L + D ++ M D L
Sbjct: 209 LQTLDTYLPDLLSQVKPD------LVIYDAGVDAH---------------MGDR-LGKLA 246
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ R+ + VL++C+ +R Y PVA V
Sbjct: 247 LTDSGLFRR------------------EMQVLTTCL----VRGY-----------PVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY D+ LA R +++HRAA VY
Sbjct: 274 IGGGYAEDLPTLAYRHSLLHRAAAEVY 300
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAG 515
GT DA R + L W L R+ I L L + THHAFP +G+G
Sbjct: 70 GTLDAKAQRRIGLPWSPELVNRTCVAVGGTILTAKLALECGIACNTAGGTHHAFPSYGSG 129
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ NDMA+AAR L + G+V++VLIVDLDVHQ
Sbjct: 130 FCIFNDMAIAARVLQQLGLVQQVLIVDLDVHQ 161
>gi|157962481|ref|YP_001502515.1| histone deacetylase superfamily protein [Shewanella pealeana ATCC
700345]
gi|157847481|gb|ABV87980.1| histone deacetylase superfamily [Shewanella pealeana ATCC 700345]
Length = 304
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+I+ Y + LPP HRFP+SK+ + YL+ + ++ Q I P + S +H
Sbjct: 2 VPLIYDASYSKLALPPLHRFPISKYRALYEYLLEQGIAEQ-PQFIAPTKASIEYLTALHD 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLP-FFL 139
+ YV F +G+ K + GF WS L R + + TH A++L +
Sbjct: 61 QSYVKDFISGELDSKLMRRIGFPWSKALVERTLYSVAGTALTCEQAITHGCAIHLSGGYH 120
Query: 140 QRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFF--------DIAAVLADLIHFMVGINT 191
F + DL+ AV V D A +A ++ ++ +
Sbjct: 121 HAHQQFGSGYCIFNDLVLAAVNSQQIDDIETVLIFDCDVHQGDGTATIAQSLNHVITCSI 180
Query: 192 Q-----PVSGYQA-----------------TLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
P Q+ T+++ L ++ KPDL+IYDAGVD H D
Sbjct: 181 HCHQNFPARKQQSDYDIELDKGTSDIEYVETVEQTLAYLIRLHKPDLIIYDAGVDIHSDD 240
Query: 230 ELGKLNLTDHG 240
LG LN++ G
Sbjct: 241 NLGYLNISTDG 251
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 58/200 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I V T S+HC +N+P RKQ SD D+ +D GT D + +V +
Sbjct: 160 HQGDGTATIAQSLNHVITCSIHCHQNFPARKQQSDYDIELDKGTSD-------IEYVETV 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q +L+RL P++
Sbjct: 213 EQ---------TLAYLIRLHKPDL------------------------------------ 227
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+I D V H+ +L L+ G+Y RD V+ A +A IP+A V GGGY D
Sbjct: 228 --IIYDAGVDIHSDD----NLGYLNISTDGIYARDLEVIHQAKTAQIPIACVIGGGYSRD 281
Query: 597 IDQLAQRQTIIHRAATHVYK 616
QL+ R + + AA + ++
Sbjct: 282 STQLSVRHSQVFIAANNFWQ 301
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA G+G+C+ ND+ LAA + + VLI D DVHQ
Sbjct: 120 HHAHQQFGSGYCIFNDLVLAAVNSQQIDDIETVLIFDCDVHQ 161
>gi|146308737|ref|YP_001189202.1| histone deacetylase superfamily protein [Pseudomonas mendocina ymp]
gi|145576938|gb|ABP86470.1| histone deacetylase superfamily [Pseudomonas mendocina ymp]
Length = 306
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 41/266 (15%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRFPM KF ++LV D + +L P+ I LVH
Sbjct: 3 LPLVYHEDYSPPFPAGHRFPMEKFRLLRDHLV-DSGLTSDAELQRPELCPAEILALVHCP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLA---------SRVRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ G+ + ++Q+ G WS LA S + + H +A +L
Sbjct: 62 DYIARYMAGELSYEDQRRLGLPWSEALARRTVRAVGGSLLTAELALRHGLACHLAGGTHH 121
Query: 142 RPVFFDIA-AVLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPV----- 194
F + DL IA YL + R + FD D ++ +
Sbjct: 122 AHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDCDVHQGDGTARLLEDEPDAITVSLH 181
Query: 195 ------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
+ Y + + L +L ++PDLV+YDAGVD H+ D
Sbjct: 182 CEQNFPARKAESDWDIPLPRGMGDADYLKVVDDTLNYLLPIYQPDLVLYDAGVDVHKDDA 241
Query: 231 LGKLNLTDHGECISSSARISSEAGVD 256
LG L LTD G A + G D
Sbjct: 242 LGYLQLTDAGLAARDEAVLHHCLGRD 267
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 60/216 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA + + +P T S+HC +N+P RK SD D+ + G DA
Sbjct: 150 HRVLIFDCDV--HQGDGTARLLEDEPDAITVSLHCEQNFPARKAESDWDIPLPRGMGDAD 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + +LL + P++ +
Sbjct: 208 YLKVV----------------DDTLNYLLPIYQPDLVLYDA------------------- 232
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+DVH+ +L L GL RD VL + IP
Sbjct: 233 -----------------GVDVHKDD------ALGYLQLTDAGLAARDEAVLHHCLGRDIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V V GGGY D LA+R I+H +A V+ RGL
Sbjct: 270 VLGVIGGGYSKDHAALARRHGILHHSAAKVWAARGL 305
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L L + THHA D +GFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ARYL+ G V +VLI D DVHQ
Sbjct: 137 AVIARYLLEAGRVHRVLIFDCDVHQ 161
>gi|409397154|ref|ZP_11248092.1| histone deacetylase family protein [Pseudomonas sp. Chol1]
gi|409118314|gb|EKM94714.1| histone deacetylase family protein [Pseudomonas sp. Chol1]
Length = 354
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 111/268 (41%), Gaps = 45/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP++ + Y LPP HRFPM KF ++LV D + L P + L H
Sbjct: 3 LPLVFHDDYSPPLPPGHRFPMEKFRLLRDHLV-DSGLTTDAALRRPMLCRHDVLNLAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLA---------SRVRTDPVPTHVIAVYLPFFLQR 141
YV ++ +G + E + G WS LA S + + H +A +L
Sbjct: 62 NYVARYCSGDMSPAELRRLGLPWSPALAQRTVRAVGGSLLTAELALQHGLACHLAGGTHH 121
Query: 142 RPVFFDIAA---VLADLICIAVYL--TFFLQRRPVF------FDIAAVLADLIHFMVGIN 190
D A+ + DL +A+YL + + R +F D A + D + V ++
Sbjct: 122 --AHRDHASGFCIFNDLAVVALYLLESGRVGRVLIFDCDVHQGDGTARILDGVADAVTVS 179
Query: 191 TQ-----PV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
PV + Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 180 LHCEKNFPVRKATSDWDIPLAPGLGDAEYLRIVDDTLNYLLPLYQPDLVLYDAGVDVHRD 239
Query: 229 DELGKLNLTDHGECISSSARISSEAGVD 256
D LG L+L+D G SA + G D
Sbjct: 240 DALGLLDLSDAGLAARDSAVLEHCLGRD 267
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L+QR+ + + L L + THHA DH +GFC+ ND+A
Sbjct: 78 RRLGLPWSPALAQRTVRAVGGSLLTAELALQHGLACHLAGGTHHAHRDHASGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A YL+ G V +VLI D DVHQ
Sbjct: 138 VVALYLLESGRVGRVLIFDCDVHQ 161
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 66/181 (36%), Gaps = 60/181 (33%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I D T S+HC +N+P RK SD D+ + G DA
Sbjct: 160 HQGDGTARILDGVADAVTVSLHCEKNFPVRKATSDWDIPLAPGLGDA------------- 206
Query: 477 SQRSEKMR-NNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIV 535
E +R + +LL L P++ +
Sbjct: 207 ----EYLRIVDDTLNYLLPLYQPDLVLYDA------------------------------ 232
Query: 536 RKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCA 595
+DVH+ +L +L GL RD VL+ + IPVA + GGGY
Sbjct: 233 ------GVDVHRDD------ALGLLDLSDAGLAARDSAVLEHCLGRDIPVAGLIGGGYDK 280
Query: 596 D 596
D
Sbjct: 281 D 281
>gi|421779567|ref|ZP_16216059.1| histone deacetylase [Moraxella catarrhalis RH4]
gi|407813277|gb|EKF84059.1| histone deacetylase [Moraxella catarrhalis RH4]
Length = 301
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GT D
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTGDE----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T LS+ K+ +N DP++ + AG
Sbjct: 206 --AYLTILSETLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKEYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTGDEAYLTILSETLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|117921075|ref|YP_870267.1| histone deacetylase superfamily protein [Shewanella sp. ANA-3]
gi|117613407|gb|ABK48861.1| histone deacetylase superfamily [Shewanella sp. ANA-3]
Length = 300
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P++H Y + LP +HRFP +K+++ + YL+ D + Q P ++ VH
Sbjct: 2 IPLVHHASYSKLALPSHHRFPTTKYARLYQYLL-DNQLAVPAQFHTPSPMTAEDVMQVHQ 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-------VYLPFFLQRR 142
++YV +F G+ + GF WS L R T + A + L
Sbjct: 61 QDYVEQFIQGRLACAALRRIGFPWSEALVERTLHSVSGTSLTASLALQAGIALHLTGGYH 120
Query: 143 PVFFDIAA---VLADLICIAVYLTFFLQRRPVF-FDIAAVLAD----LIHFMVGINTQPV 194
+D + + DLI A L Q V FD D L H GI + +
Sbjct: 121 HAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGTATLSHRHQGIISCSI 180
Query: 195 SG-------------------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
G YQ T+++ L ++ +PDL++YDAGVD HQ D
Sbjct: 181 HGKENFPSRKQQSHYDIELTKGSDDSAYQETVEQTLELLIRLHQPDLILYDAGVDIHQDD 240
Query: 230 ELGKLNLTDHG 240
+LG L ++ G
Sbjct: 241 DLGHLMISKQG 251
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 86/212 (40%), Gaps = 62/212 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDGTA + + + + S+H N+P RKQ S D+ + G+DD+
Sbjct: 150 HKVLIFDCDV--HQGDGTATLSHRHQGIISCSIHGKENFPSRKQQSHYDIELTKGSDDSA 207
Query: 465 -NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
TV T L+RL P++ + AG
Sbjct: 208 YQETVEQT-----------------LELLIRLHQPDLILYD---------AG-------- 233
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
+D+HQ L L GLY RD VL A +A I
Sbjct: 234 -------------------VDIHQD------DDLGHLMISKQGLYQRDLTVLSMAKAANI 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
PVA V GGGY D QL+QR + + AA H++
Sbjct: 269 PVAAVIGGGYSRDELQLSQRHSQLFIAANHLW 300
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ +AAR L+ + KVLI D DVHQ
Sbjct: 120 HHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQ 161
>gi|389681767|ref|ZP_10173111.1| histone deacetylase family protein [Pseudomonas chlororaphis O6]
gi|388554302|gb|EIM17551.1| histone deacetylase family protein [Pseudomonas chlororaphis O6]
Length = 306
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y P HRFPM KF ++LV D + + L+ P+ + I L H
Sbjct: 3 LPLIYHDDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDADLMRPELCPKEILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGL---------ASRVRTDPVPTHVIAVYLPFFLQR 141
Y+ ++ G+ + ++Q+ G W+ L S + + H +A +L
Sbjct: 62 GYIERYMAGELSREDQRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHH 121
Query: 142 ----RPVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPV-- 194
P F + DL I+ YL + R + FD D ++ V
Sbjct: 122 AHYDHPAGF---CIFNDLAVISHYLLEAGRVGRVLIFDCDVHQGDGTARILEHTPDAVTV 178
Query: 195 ---------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
+ Y + + L +L ++PDLV+YDAGVD H+
Sbjct: 179 SLHCEKNFPARKATSDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
Query: 228 HDELGKLNLTDHG 240
D LG L LTD G
Sbjct: 239 DDALGYLKLTDQG 251
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 79/214 (36%), Gaps = 60/214 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I + P T S+HC +N+P RK SD D+ + +G DA
Sbjct: 151 RVLIFDCDV--HQGDGTARILEHTPDAVTVSLHCEKNFPARKATSDWDIPLPMGMGDADY 208
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
V + +LL L P++ + AG + D AL
Sbjct: 209 LKVV----------------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALG 243
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L G+ RD V+ + IPV
Sbjct: 244 YLKLTDQGVA---------------------------------ARDEQVMRHCLGRDIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERG 619
V GGGY D LA+R I+H +A V+ G
Sbjct: 271 LGVIGGGYSKDRQALARRHGILHHSAQRVWTSSG 304
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLEAGRVGRVLIFDCDVHQ 161
>gi|409990645|ref|ZP_11273991.1| histone deacetylase superfamily protein [Arthrospira platensis str.
Paraca]
gi|409938497|gb|EKN79815.1| histone deacetylase superfamily protein [Arthrospira platensis str.
Paraca]
Length = 305
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 93/230 (40%), Gaps = 73/230 (31%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+QR+ I L LS + THHAFP++G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPALAQRTCIAVGGAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ------------------------------- 547
NDMA+AA + + G+ +K+LIVDLDVHQ
Sbjct: 133 FNDMAIAACVMQKLGLAKKILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQT 192
Query: 548 HTRSIPVP-------SLTVLSSCVPGL---YMRDYYVLDTAISAGIP------------- 584
R IP+ L +L+S +P L + D + D + I
Sbjct: 193 SDRDIPLAVGMEDEEYLQILASHLPDLLTEFRPDLVIYDAGVDPHIGDRLGKLALTDSGL 252
Query: 585 -------VATVTGGG----------YCADIDQLAQRQTIIHRAATHVYKE 617
++T G G YC D+ L R +++HRAAT VY++
Sbjct: 253 WRREMQVLSTCVGMGYPVAGIIGGGYCEDMQGLVYRHSLLHRAATDVYRQ 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI+ Y LPP HRFPM KF + L+ + VI +S QL P+ ELVH
Sbjct: 1 MNLPIVFHPDYVAPLPPGHRFPMPKFGLLCDMLLEEGVIRRS-QLHLPKLPPTEWIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
++YV + G K Q+ G WS LA R
Sbjct: 60 HRDYVKGYCEGTLDPKAQRRIGLPWSPALAQR 91
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L HLP +L +F+PDLVIYDAGVDPH D LGKL LTD G
Sbjct: 208 YLQILASHLPDLLTEFRPDLVIYDAGVDPHIGDRLGKLALTDSG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + GD TA IF +P VFTFSMHC N+P +KQ SD D+ + VG +D
Sbjct: 152 ILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMED 205
>gi|416254189|ref|ZP_11638623.1| histone deacetylase family protein [Moraxella catarrhalis O35E]
gi|326577638|gb|EGE27515.1| histone deacetylase family protein [Moraxella catarrhalis O35E]
Length = 301
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 82/192 (42%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GTDD
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTDDN----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K+ +N DP++ + AG
Sbjct: 206 --AYLTILGKTLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPVA V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLITAHKAGIPVAVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 99/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L + LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTDDNAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|260434634|ref|ZP_05788604.1| histone deacetylase family protein [Synechococcus sp. WH 8109]
gi|260412508|gb|EEX05804.1| histone deacetylase family protein [Synechococcus sp. WH 8109]
Length = 305
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 100/259 (38%), Gaps = 59/259 (22%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP HRFPM+KF L+ V+ ++ ++ P I+ E VH +
Sbjct: 3 LPVVYHPHYSAPLPSTHRFPMAKFRLLHQLLLEQGVV-QADEVHRPLSIARRDLESVHPR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGF---------EWSA--------------GLASRVRTDPVP 127
Y F + T EQ+ G W A GLAS +
Sbjct: 62 RYHEAFSRDRLTRPEQRRIGLPATRPLVQRTWLAVGGTLLTARLALKRGLASHLAGGTHH 121
Query: 128 TH---------------VIAVYLPFFLQRRPVFFDIAAVLAD-----------LICIAVY 161
H V L RR + D+ D + ++V+
Sbjct: 122 AHPGFGSGFCIFNDCAVAARVLLGTGEVRRILIVDLDVHQGDGSAACFQHDPRVTTLSVH 181
Query: 162 LTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDA 221
R V DI LAD G N Y A + + LP L PDLV+Y+A
Sbjct: 182 AASNFPLRKVDGDIDIPLAD------GTND---DDYLAAIADRLPDALDTIAPDLVLYNA 232
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVDPH+ D LG+L+L+D G
Sbjct: 233 GVDPHRDDRLGRLDLSDAG 251
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTV 559
THHA P G+GFC+ ND A+AAR L+ G VR++LIVDLDVHQ S P +T
Sbjct: 118 GTHHAHPGFGSGFCIFNDCAVAARVLLGTGEVRRILIVDLDVHQGDGSAACFQHDPRVTT 177
Query: 560 LS 561
LS
Sbjct: 178 LS 179
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + GDG+A F DP V T S+H N+P RK D+D+ + GT+D
Sbjct: 152 ILIVDLDVHQGDGSAACFQHDPRVTTLSVHAASNFPLRKVDGDIDIPLADGTND 205
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
GL MRD VLD + IP ATV GGGY A + L QR I+ RAA
Sbjct: 251 GLNMRDRLVLDACLRRRIPTATVIGGGYDA-LAPLVQRHAIVVRAAA 296
>gi|83649181|ref|YP_437616.1| deacetylase [Hahella chejuensis KCTC 2396]
gi|83637224|gb|ABC33191.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Hahella chejuensis KCTC 2396]
Length = 306
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 87/220 (39%), Gaps = 58/220 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
++ + ++ I + GDGTA I DP +FT S HC +N+P+RK SD D+ +D G+
Sbjct: 145 VRGGEASRVLIIDCDVHQGDGTARILTDDPDIFTCSFHCRQNFPYRKAHSDFDIELDRGS 204
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
D W+ ++ L+ P+ F + AG + +
Sbjct: 205 DGRAYMQTMEHWLP----------------YIFDLTQPD---------FVLYDAGVDVHD 239
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
D L H H + + RD YV+ +
Sbjct: 240 DDVLG--------------------HLHLKDADIAE-------------RDEYVIRQCLE 266
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
G+PVA V GGGY D +LA R ++H A +Y+E L
Sbjct: 267 RGVPVACVIGGGYDKDRKRLAARHGVMHGVANRLYQEYAL 306
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W + R+ + + L L + + THHA DHG+GFC+ ND+A
Sbjct: 79 RQIGLPWSEGVCTRTFRAVGGTLLTARLALKYGLVAHLAGGTHHAHYDHGSGFCVFNDLA 138
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+AAR L+R G +VLI+D DVHQ
Sbjct: 139 VAARVLVRGGEASRVLIIDCDVHQ 162
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV 87
+ +P+++ +Y +P HRFPM KF +L + V+ + L P+ ++ L
Sbjct: 1 MAKVPLVYHPEYSPEIPAGHRFPMEKFRLLAEFLRAEGVLTDA-NLFTPEAATQEDIALA 59
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
H +YV F +G+ + K + G WS G+ +R
Sbjct: 60 HCADYVRDFRHGELSAKHMRQIGLPWSEGVCTR 92
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTD 238
Y T++ LP I +PD V+YDAGVD H D LG L+L D
Sbjct: 209 YMQTMEHWLPYIFDLTQPDFVLYDAGVDVHDDDVLGHLHLKD 250
>gi|409201964|ref|ZP_11230167.1| histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
flavipulchra JG1]
Length = 301
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 105/251 (41%), Gaps = 62/251 (24%)
Query: 40 ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQ-ISESIAELVHTKEYVHKFFN 98
E +LP HRFP+SK+ K + + + +K + EP+Q I+ +L H YV F N
Sbjct: 10 ELSLPEKHRFPISKYKKLYQRINASRF---AKFIKEPEQKITADALQLCHDSNYVDGFLN 66
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY-LPF----------------FLQR 141
G +EK K GF WS L R A Y L + F
Sbjct: 67 GTLSEKAIKKMGFPWSEQLVERTLISLGGGLAAAKYALEYGFGANLSGGYHHAHRDFGSG 126
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR--RPVFFD--------IAAVLADL-------IH 184
+F D A V A LI QR R + FD A ++AD IH
Sbjct: 127 FCIFNDWAVVAATLIA--------HQRVERVLIFDCDVHQGDGTATIVADRNDIITCSIH 178
Query: 185 ---------------FMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
F + +NTQ Y AT++E L + ++PD+++Y+AG D +Q D
Sbjct: 179 CESNFPRIKPQSDLDFALPVNTQDAQ-YVATVREALQLAVRLYQPDIILYNAGADVYQGD 237
Query: 230 ELGKLNLTDHG 240
ELG +++ G
Sbjct: 238 ELGHFSVSKQG 248
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFC+ ND A+ A LI H V +VLI D DVHQ
Sbjct: 117 HHAHRDFGSGFCIFNDWAVVAATLIAHQRVERVLIFDCDVHQ 158
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 72/195 (36%), Gaps = 60/195 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I + T S+HC N+P K SDLD A+ V T DA
Sbjct: 148 RVLIFDCDV--HQGDGTATIVADRNDIITCSIHCESNFPRIKPQSDLDFALPVNTQDA-- 203
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+++ E ++ +RL P+I L N A
Sbjct: 204 --------QYVATVREALQ------LAVRLYQPDI----------------ILYNAGA-- 231
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
DV+Q L S G+ RD V + A IP+
Sbjct: 232 ------------------DVYQGDE------LGHFSVSKQGVRARDSIVFEYAHHLNIPL 267
Query: 586 ATVTGGGYCADIDQL 600
A GGGY D+D L
Sbjct: 268 AFALGGGYQRDVDHL 282
>gi|383768053|ref|YP_005447036.1| putative deacetylase [Phycisphaera mikurensis NBRC 102666]
gi|381388323|dbj|BAM05139.1| putative deacetylase [Phycisphaera mikurensis NBRC 102666]
Length = 315
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 81/200 (40%), Gaps = 50/200 (25%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA I +P FT S+HC NYP RK SDLDV + G DAG
Sbjct: 141 VLIVDLDVHQGDGTARILRHEPRAFTLSVHCASNYPARKARSDLDVPLPDGLGDAG---- 196
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L E G+ +LL +P++ +
Sbjct: 197 ---YLRVLGHGDEASGFRGLG-WLLEQVEPDLVLYDA----------------------- 229
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+DVH + L L+ GL RD VL+ G+PVA V
Sbjct: 230 -------------GVDVHADDK------LGRLAMTDAGLRERDRAVLEACRGQGVPVACV 270
Query: 589 TGGGYCADIDQLAQRQTIIH 608
GGGY D LAQR I+H
Sbjct: 271 IGGGYGDDRVALAQRHGILH 290
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
RT+ L W L+ R+ + L L + THHA HGAGFC+ ND+A
Sbjct: 67 RTLGLPWSAGLAARTVTALGGTVLAARLALRHGLAANLAGGTHHAHRGHGAGFCIFNDLA 126
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+AA L+ V +VLIVDLDVHQ
Sbjct: 127 VAALTLLEEDAVDQVLIVDLDVHQ 150
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LPP HRFPM KF ++L ++ L P+ + H Y F +G+
Sbjct: 4 LPPGHRFPMPKFGHLHDHLAAVGLLGPG-NLHRPEPAAVETLGRAHDPAYADAFLSGRLD 62
Query: 103 EKEQKVTGFEWSAGLASRVRT 123
+ G WSAGLA+R T
Sbjct: 63 RDALRTLGLPWSAGLAARTVT 83
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
G +A+ L +L Q +PDLV+YDAGVD H D+LG+L +TD G
Sbjct: 204 GDEASGFRGLGWLLEQVEPDLVLYDAGVDVHADDKLGRLAMTDAG 248
>gi|291570560|dbj|BAI92832.1| histone deacetylase family protein [Arthrospira platensis NIES-39]
Length = 305
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 93/230 (40%), Gaps = 73/230 (31%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+QR+ I L LS + THHAFP++G+GFC+
Sbjct: 73 DPKAQRRIGLPWSPALAQRTCIAVGGAILTAKLALSHGLACNTAGGTHHAFPNYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ------------------------------- 547
NDMA+AA + + G+ +K+LIVDLDVHQ
Sbjct: 133 FNDMAIAACVMQKLGLAKKILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQT 192
Query: 548 HTRSIPVP-------SLTVLSSCVPGL---YMRDYYVLDTAISAGIP------------- 584
R IP+ L +L+S +P L + D + D + I
Sbjct: 193 SDRDIPLAVGMEDEEYLQILASHLPDLLTEFRPDLVIYDAGVDPHIGDRLGKLALTDSGL 252
Query: 585 -------VATVTGGG----------YCADIDQLAQRQTIIHRAATHVYKE 617
++T G G YC D+ L R +++HRAAT VY++
Sbjct: 253 WRREMQVLSTCVGMGYPVAGIIGGGYCEDMHGLVYRHSLLHRAATDVYRQ 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
++LPI+ Y LPP HRFPM KF + L+ + VI +S QL P+ ELVH
Sbjct: 1 MNLPIVFHPDYVAPLPPGHRFPMPKFGLLCDMLLEEGVIRRS-QLHLPKLPPTEWIELVH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
++YV + G K Q+ G WS LA R
Sbjct: 60 HRDYVKGYCEGTLDPKAQRRIGLPWSPALAQR 91
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L HLP +L +F+PDLVIYDAGVDPH D LGKL LTD G
Sbjct: 208 YLQILASHLPDLLTEFRPDLVIYDAGVDPHIGDRLGKLALTDSG 251
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + GD TA IF +P VFTFSMHC N+P +KQ SD D+ + VG +D
Sbjct: 152 ILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMED 205
>gi|414069842|ref|ZP_11405833.1| Deacetylase [Pseudoalteromonas sp. Bsw20308]
gi|410807805|gb|EKS13780.1| Deacetylase [Pseudoalteromonas sp. Bsw20308]
Length = 302
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 99/257 (38%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ +I L+EP + + EL+H
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFAMSKFAHLYQHVEELGLI--GDNLVEPILGTPAPLELIHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
+ Y+H +N + EK + G WS L +R T P T H IA +L
Sbjct: 64 ENYIHDLWNNRLDEKAMRRIGLPWSKKLMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQA- 199
F C+ L F Q ++ VL + G T + +QA
Sbjct: 124 HAHTDFGSG------YCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQAY 177
Query: 200 ------------------------------------TLKEHLPGILAQFKPDLVIYDAGV 223
+ E L +L + P LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDIGLTDNMKDDEYLAIVDETLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q D LGKL+++ G
Sbjct: 238 DIWQGDGLGKLDISWDG 254
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 60/195 (30%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DVGTDDAGNRTVALTW 472
L + GDGTA + +T S+HC +N+PFRK SDLD+ + D DD
Sbjct: 160 LDVHQGDGTAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLTDNMKDD---------- 209
Query: 473 VTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRH 532
+L+ E + +LL+ +P + + AG + L +
Sbjct: 210 -EYLAIVDETLS------YLLKELNPSLVLYD---------AGVDIWQGDGLGKLDISWD 253
Query: 533 GIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGG 592
GI++ RD+ VL + PVATV GGG
Sbjct: 254 GIIK---------------------------------RDHLVLKRCLEHNTPVATVIGGG 280
Query: 593 YCADIDQLAQRQTII 607
Y D +LA+R I+
Sbjct: 281 YDKDHLRLAKRHAIV 295
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+A + LI G V VLI DLDVHQ
Sbjct: 121 GTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQ 164
>gi|359452419|ref|ZP_09241768.1| hypothetical protein P20495_0507 [Pseudoalteromonas sp. BSi20495]
gi|358050552|dbj|GAA78017.1| hypothetical protein P20495_0507 [Pseudoalteromonas sp. BSi20495]
Length = 302
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 99/257 (38%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ +I L+EP + + EL+H
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFAMSKFAHLYQHVEELGLI--GDNLVEPILGTPAPLELIHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
+ Y+H +N + EK + G WS L +R T P T H IA +L
Sbjct: 64 ENYIHDLWNNRLDEKAMRRIGLPWSKKLMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQA- 199
F C+ L F Q ++ VL + G T + +QA
Sbjct: 124 HAHTDFGSG------YCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQAY 177
Query: 200 ------------------------------------TLKEHLPGILAQFKPDLVIYDAGV 223
+ E L +L + P LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDIGLTDNMKDDEYLAIVDETLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q D LGKL+++ G
Sbjct: 238 DIWQGDGLGKLDISWDG 254
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 60/195 (30%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DVGTDDAGNRTVALTW 472
L + GDGTA + +T S+HC +N+PFRK SDLD+ + D DD
Sbjct: 160 LDVHQGDGTAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLTDNMKDD---------- 209
Query: 473 VTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRH 532
+L+ E + +LL+ +P + + AG + L +
Sbjct: 210 -EYLAIVDETLS------YLLKELNPSLVLYD---------AGVDIWQGDGLGKLDISWD 253
Query: 533 GIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGG 592
GI++ RD+ VL + IPVATV GGG
Sbjct: 254 GIIK---------------------------------RDHLVLKRCLEHSIPVATVIGGG 280
Query: 593 YCADIDQLAQRQTII 607
Y D +LA+R I+
Sbjct: 281 YDKDHLRLAKRHAIV 295
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+A + LI G V VLI DLDVHQ
Sbjct: 121 GTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQ 164
>gi|89073475|ref|ZP_01159998.1| histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
SKA34]
gi|89050739|gb|EAR56220.1| histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
SKA34]
Length = 302
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 110/253 (43%), Gaps = 46/253 (18%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL--V 87
LP+I+ ++Y TLP HR+P++K+ F + ++ K++ Q I IA++ +
Sbjct: 2 LPLIYHSQYSALTLPEKHRYPINKYRLLFEAVFHSEL---RKKVSIHQPIRSDIAKIKAI 58
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFF 138
H EYV + + + GF WS L +R + D H IA++L
Sbjct: 59 HDSEYVDDLLFNRLPAAKMRRIGFPWSDQLITRTLLSTGGTQLTVDLALEHGIAIHLSGG 118
Query: 139 LQRRPVFFDIAAVLADLICIAV--YLTFFLQRRPVFFD--------IAAVLAD---LIHF 185
F L + + IA L++ + + D A +LA+ +I F
Sbjct: 119 YHHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDCDVHHGDGTATLLANDPNIITF 178
Query: 186 MVGINTQ------------------PVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
V + Y A L+ LP +LAQ +PDLVIYDAGVD HQ
Sbjct: 179 SVHCDKNFPARKPDSDIDLALERNTSTDDYLAALQGILPLLLAQHQPDLVIYDAGVDIHQ 238
Query: 228 HDELGKLNLTDHG 240
HDELG +++ G
Sbjct: 239 HDELGYFDISKQG 251
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 88/220 (40%), Gaps = 62/220 (28%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAID-- 457
+ SH +M I + GDGTA + DP + TFS+HC +N+P RK SD+D+A++
Sbjct: 143 ALSYSHIDKVMIIDCDVHHGDGTATLLANDPNIITFSVHCDKNFPARKPDSDIDLALERN 202
Query: 458 VGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFC 517
TDD ++ L GI LL P++ + AG
Sbjct: 203 TSTDD---------YLAAL---------QGILPLLLAQHQPDLVIYD---------AG-- 233
Query: 518 LMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDT 577
+D+HQH L GLY RD+Y+L
Sbjct: 234 -------------------------VDIHQHDE------LGYFDISKQGLYQRDHYILTQ 262
Query: 578 AISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
+ + IPVA V GGGY + L + + AA V+ +
Sbjct: 263 SKAQNIPVAAVIGGGYRTNHQDLVELHLQLIHAALLVHNK 302
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA++ + + + KV+I+D DVH
Sbjct: 120 HHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDCDVHH 161
>gi|359440503|ref|ZP_09230417.1| hypothetical protein P20429_0778 [Pseudoalteromonas sp. BSi20429]
gi|358037538|dbj|GAA66666.1| hypothetical protein P20429_0778 [Pseudoalteromonas sp. BSi20429]
Length = 302
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 98/257 (38%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y P HRF MSKF+ + ++ + +I L+EP + EL+H
Sbjct: 6 HLPLVYHPNYSFNFDPKHRFAMSKFAHLYQHVAKLGLI--GDNLVEPILGTPEPLELIHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
+ Y+H +N + EK + G WS L +R T P T H IA +L
Sbjct: 64 ENYIHDLWNNRLDEKAMRRIGLPWSKELMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQA- 199
F C+ L F Q ++ VL + G T + +QA
Sbjct: 124 HAHTDFGSG------YCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLEHQAY 177
Query: 200 ------------------------------------TLKEHLPGILAQFKPDLVIYDAGV 223
+ + L +L + P LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDVGLADNMKDDEYLAVVDDTLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q D LGKL+++ G
Sbjct: 238 DIWQGDGLGKLDISWDG 254
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 60/195 (30%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DVGTDDAGNRTVALTW 472
L + GDGTA + + +T S+HC +N+PFRK SDLDV + D DD
Sbjct: 160 LDVHQGDGTAAMLEHQAYAYTCSIHCEKNFPFRKSASDLDVGLADNMKDD---------- 209
Query: 473 VTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRH 532
+L+ + + +LL+ +P + + AG + L +
Sbjct: 210 -EYLAVVDDTLS------YLLKELNPSLVLYD---------AGVDIWQGDGLGKLDISWD 253
Query: 533 GIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGG 592
GIV+ RD+ VL + PVATV GGG
Sbjct: 254 GIVK---------------------------------RDHLVLKRCLEHNTPVATVIGGG 280
Query: 593 YCADIDQLAQRQTII 607
Y D +LA+R I+
Sbjct: 281 YDKDHLRLAKRHAIV 295
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+A + LI G V VLI DLDVHQ
Sbjct: 121 GTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQ 164
>gi|88799789|ref|ZP_01115363.1| Deacetylase, including yeast histone deacetylase and acetoin
utilization protein [Reinekea blandensis MED297]
gi|88777523|gb|EAR08724.1| Deacetylase, including yeast histone deacetylase and acetoin
utilization protein [Reinekea sp. MED297]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 60/212 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ + + GDGTA I D DP + T S HC +N+P RK S+ D +D + D
Sbjct: 151 RVLIIDTDV--HQGDGTARILDNDPDILTVSFHCRQNFPARKAHSNWDFELDHQSGDQ-- 206
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
T++ + + +LL +++P++ + D GA
Sbjct: 207 -----TYLNLVHRH---------IPYLLDITEPDLVLY-------DAGA----------- 234
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
DVHQ +L +L+ G+Y RD ++L IPV
Sbjct: 235 ------------------DVHQDD------ALGLLNLTDDGIYQRDVFILSECAYRNIPV 270
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
+ V GGGY D +LA+ +IIH+AA V++E
Sbjct: 271 SCVIGGGYMKDRKRLAEVHSIIHQAAFDVWRE 302
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y NHRFPM KF++ ++ L ++ + +L P+ +E+ L H
Sbjct: 3 LPLIYHPGYSPEFDANHRFPMEKFARLYDRLENIGLL-RHCELFRPEPANEATIRLAHHP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+YV + + + + K + G WS G+ R
Sbjct: 62 DYVTGYRDNQLSAKAMRRIGLPWSEGVMRRT 92
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + H+P +L +PDLV+YDAG D HQ D LG LNLTD G
Sbjct: 208 YLNLVHRHIPYLLDITEPDLVLYDAGADVHQDDALGLLNLTDDG 251
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA G+GFC+ ND+A+ AR+ + + +VLI+D DVHQ
Sbjct: 118 GTHHAHYQEGSGFCIFNDLAICARHALTKPGIDRVLIIDTDVHQ 161
>gi|114048034|ref|YP_738584.1| histone deacetylase superfamily protein [Shewanella sp. MR-7]
gi|113889476|gb|ABI43527.1| histone deacetylase superfamily [Shewanella sp. MR-7]
Length = 300
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LP +HRFP +K+++ + YL+ D + Q P ++ VH
Sbjct: 2 IPLVYHASYSKLALPSHHRFPTTKYARLYQYLL-DNQLAVPAQFHTPSPMTAEDVMQVHQ 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASR----VRTDPVPTHV-----IAVYLPFFLQ 140
++YV +F G + + GF WS L R V + H+ IA++L
Sbjct: 61 QDYVEQFIQGSLSSTALRRIGFPWSEALVERTLHSVSGTSLTAHLAMQTGIALHLTGGYH 120
Query: 141 RRPVFFDIA-AVLADLICIAVYLTFFLQRRPVF-FDIAAVLAD----LIHFMVGINTQPV 194
F + DLI A L Q V FD D L H GI + +
Sbjct: 121 HAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGTATLSHKHQGIISCSI 180
Query: 195 -------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
S YQ T+++ L ++ +PDL++YDAGVD HQ D
Sbjct: 181 HCKENFPSRKQQSHYDIELTKGADDSAYQETVEQTLELLIRLHQPDLILYDAGVDIHQDD 240
Query: 230 ELGKLNLTDHG 240
+LG L ++ G
Sbjct: 241 DLGHLKISKQG 251
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 85/212 (40%), Gaps = 62/212 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDGTA + K + + S+HC N+P RKQ S D+ + G DD+
Sbjct: 150 HKVLIFDCDV--HQGDGTATLSHKHQGIISCSIHCKENFPSRKQQSHYDIELTKGADDSA 207
Query: 465 -NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
TV T L+RL P++ + AG
Sbjct: 208 YQETVEQT-----------------LELLIRLHQPDLILYD---------AG-------- 233
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
+D+HQ L L GLY RD VL +A I
Sbjct: 234 -------------------VDIHQD------DDLGHLKISKQGLYQRDLTVLSMVKAANI 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
PVA V GGGY D QL+QR + + AA H++
Sbjct: 269 PVAAVIGGGYSRDELQLSQRHSQLFIAANHLW 300
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ +AAR L+ + KVLI D DVHQ
Sbjct: 120 HHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQ 161
>gi|358447846|ref|ZP_09158359.1| deacetylase family protein [Marinobacter manganoxydans MnI7-9]
gi|357227971|gb|EHJ06423.1| deacetylase family protein [Marinobacter manganoxydans MnI7-9]
Length = 224
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 92/211 (43%), Gaps = 60/211 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI ++ + + GDGTA + +P FT S+HC RNYPF K+ DLDVA+ G +D
Sbjct: 72 RVLIFDVDV--HQGDGTAALLANEPNAFTCSIHCERNYPFEKKIGDLDVALPDGLEDG-- 127
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+L SE + + L LS P+I + D G
Sbjct: 128 --------AYLEVVSETLHKS------LALSRPDIVLY-------DAG------------ 154
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
+DV R+ P+ L + G++ RD+ VL IPV
Sbjct: 155 -----------------VDVF---RNDPLGRLNISEQ---GIFERDFQVLSELKRRDIPV 191
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
ATV GGGY D +LA+R I+ AA+ V+
Sbjct: 192 ATVIGGGYDDDRVKLAKRHGIVVEAASRVFS 222
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D+ AGFC++ND+A+AA L++ + +VLI D+DVHQ
Sbjct: 39 GTHHAHYDYAAGFCILNDLAIAANVLLQQEGIERVLIFDVDVHQ 82
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + E L LA +PD+V+YDAGVD ++D LG+LN+++ G
Sbjct: 127 GAYLEVVSETLHKSLALSRPDIVLYDAGVDVFRNDPLGRLNISEQG 172
>gi|254502902|ref|ZP_05115053.1| Histone deacetylase family, putative [Labrenzia alexandrii DFL-11]
gi|222438973|gb|EEE45652.1| Histone deacetylase family, putative [Labrenzia alexandrii DFL-11]
Length = 313
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 100/251 (39%), Gaps = 43/251 (17%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI+H Y LP NHRFPM KF + L+R + + S P+ L H
Sbjct: 3 LPIVHHPAYCADLPANHRFPMDKFRAVAD-LIRAEGLLGSGDFYRPRPAPFEWVALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPF------------F 138
YV + FN + +K + GF A +A R R V+ YL
Sbjct: 62 VYVDQVFNAEVPQKIAREIGFPMRADIALRARC-ATGGSVLTGYLALEHGLACNTAGGSH 120
Query: 139 LQRRP------VFFDIAAVLADL-----ICIAVYLTFFLQRRPVFFDIAAVLADLIHF-M 186
RR VF D+A L L I A+ + + + DI + D+ F M
Sbjct: 121 HARRAHGAGFCVFNDVAVALKVLQADGAIRKALVIDLDVHQGDGTADIFSGDPDIFTFSM 180
Query: 187 VGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
PV + Y L+E LP +L Q DLV Y+AGVDP+ D
Sbjct: 181 HSAKNYPVRKVPSHLDLALPDAMEDAAYLTALQEVLPDLLRQEAWDLVFYNAGVDPYFED 240
Query: 230 ELGKLNLTDHG 240
LG+L L+ G
Sbjct: 241 RLGRLALSRDG 251
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 87/216 (40%), Gaps = 70/216 (32%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
+AL+++ L + GDGTA IF DP +FTFSMH +NYP RK S LD+A+ +DA
Sbjct: 151 KALVID--LDVHQGDGTADIFSGDPDIFTFSMHSAKNYPVRKVPSHLDLALPDAMEDAAY 208
Query: 466 RTVALTWV--TFLSQRSEKM--RNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
T AL V L Q + + N G+ DP F D L D
Sbjct: 209 LT-ALQEVLPDLLRQEAWDLVFYNAGV--------DPY---------FEDRLGRLALSRD 250
Query: 522 -MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+ RY+I + RS+ VP VL
Sbjct: 251 GLKTRDRYVI----------------ETVRSLGVPLAGVL-------------------- 274
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY DID+LA R +HR A +++
Sbjct: 275 ---------GGGYSNDIDELADRHVTLHRTALSIWE 301
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA HGAGFC+ ND+A+A + L G +RK L++DLDVHQ
Sbjct: 118 GSHHARRAHGAGFCVFNDVAVALKVLQADGAIRKALVIDLDVHQ 161
>gi|90580008|ref|ZP_01235816.1| histone deacetylase/AcuC/AphA family protein [Photobacterium
angustum S14]
gi|90438893|gb|EAS64076.1| histone deacetylase/AcuC/AphA family protein [Photobacterium
angustum S14]
Length = 302
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+I+ ++Y TLP HR+P++K+ F + ++ +K + +P + + + +H
Sbjct: 2 LPLIYHSQYSALTLPEKHRYPINKYRLLFEAIFHSELSNKVS-IHQPNRADIAKIKAIHD 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQ 140
EYV + + + GF WS L +R + D H IA++L
Sbjct: 61 SEYVDDLLFNRLPAAKMRRIGFPWSNELINRTLLSTGGTQLTVDLALEHGIAIHLSGGYH 120
Query: 141 RRPVFFDIAAVLADLICIAV--YLTFFLQRRPVFFD--------IAAVLAD---LIHFMV 187
F L + + IA L++ + + D A + AD +I F V
Sbjct: 121 HAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDCDVHHGDGTATLFADNPNIITFSV 180
Query: 188 GINTQ------------------PVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
+ Y L+ LP +LAQ +PDLVIYDAGVD HQHD
Sbjct: 181 HCDKNFPARKPDSDVDLALERNTSTDDYLTALQGVLPLLLAQHQPDLVIYDAGVDIHQHD 240
Query: 230 ELGKLNLTDHG 240
ELG +++ G
Sbjct: 241 ELGYFDISKQG 251
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 81/196 (41%), Gaps = 62/196 (31%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAID-- 457
+ SH +M I + GDGTA +F +P + TFS+HC +N+P RK SD+D+A++
Sbjct: 143 ALSYSHIDKVMIIDCDVHHGDGTATLFADNPNIITFSVHCDKNFPARKPDSDVDLALERN 202
Query: 458 VGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFC 517
TDD ++T L G+ LL P++ + AG
Sbjct: 203 TSTDD---------YLTAL---------QGVLPLLLAQHQPDLVIYD---------AG-- 233
Query: 518 LMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDT 577
+D+HQH L GLY RD+Y+L
Sbjct: 234 -------------------------VDIHQHDE------LGYFDISKQGLYQRDHYILTQ 262
Query: 578 AISAGIPVATVTGGGY 593
+ S IPVA V GGGY
Sbjct: 263 SKSQDIPVAAVIGGGY 278
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA++ + + + KV+I+D DVH
Sbjct: 120 HHAHHDFGSGFCLFNDLAIAAKHALSYSHIDKVMIIDCDVHH 161
>gi|399522038|ref|ZP_10762703.1| histone deacetylase superfamily protein [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110073|emb|CCH39263.1| histone deacetylase superfamily protein [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 311
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 103/266 (38%), Gaps = 41/266 (15%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRFPM KF ++LV D + L P+ I LVH
Sbjct: 8 LPLVYHEDYSPPFPAGHRFPMEKFRLLRDHLV-DSGLTTDAALQRPELCPAEILALVHCP 66
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLA---------SRVRTDPVPTHVIAVYLPFFLQR 141
+Y+ ++ G+ + ++Q+ G WS LA S + + H +A +L
Sbjct: 67 DYIARYMAGELSYEDQRRLGLPWSDALAQRTVRAVGGSLLTAELALRHGLACHLAGGTHH 126
Query: 142 RPVFFDIA-AVLADLICIAVYLTFFLQ-RRPVFFDIAAVLADLIHFMVGINTQPVS---- 195
F + DL IA YL + R + FD D ++ V+
Sbjct: 127 AHYDFPSGFCIFNDLAVIARYLLEAGRVHRVLIFDCDVHQGDGTARLLEDEPDAVTVSLH 186
Query: 196 -------------------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
Y + + L +L ++PDLV+YDAGVD H+ D
Sbjct: 187 CEQNFPARKAQSDWDIPLPRGMGDEDYLKVVDDILNYLLPIYQPDLVLYDAGVDVHKDDA 246
Query: 231 LGKLNLTDHGECISSSARISSEAGVD 256
LG L LTD G A + G D
Sbjct: 247 LGYLQLTDAGLAARDEAVLQHCLGRD 272
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 83/216 (38%), Gaps = 60/216 (27%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
HR LI + + + GDGTA + + +P T S+HC +N+P RK SD D+ + G D
Sbjct: 155 HRVLIFDCDV--HQGDGTARLLEDEPDAVTVSLHCEQNFPARKAQSDWDIPLPRGMGDED 212
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
V + I +LL + P++ +
Sbjct: 213 YLKVV----------------DDILNYLLPIYQPDLVLYDA------------------- 237
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+DVH+ +L L GL RD VL + IP
Sbjct: 238 -----------------GVDVHKDD------ALGYLQLTDAGLAARDEAVLQHCLGRDIP 274
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V V GGGY D LA+R I+H +A V+ RGL
Sbjct: 275 VLGVIGGGYSKDHAALARRHGILHHSAARVWAARGL 310
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L+QR+ + + L L + THHA D +GFC+ ND+
Sbjct: 82 QRRLGLPWSDALAQRTVRAVGGSLLTAELALRHGLACHLAGGTHHAHYDFPSGFCIFNDL 141
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ARYL+ G V +VLI D DVHQ
Sbjct: 142 AVIARYLLEAGRVHRVLIFDCDVHQ 166
>gi|347754121|ref|YP_004861685.1| deacetylase [Candidatus Chloracidobacterium thermophilum B]
gi|347586639|gb|AEP11169.1| Deacetylase, including histone deacetylase and acetoin utilization
protein [Candidatus Chloracidobacterium thermophilum B]
Length = 299
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 100/238 (42%), Gaps = 49/238 (20%)
Query: 47 HRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQ 106
H FPM KF + L+ + + + ++ P E L HT++Y + G+ T +E
Sbjct: 17 HVFPMVKFPRVHAQLIEEGTL-SPEDVVAPAPAREEDILLAHTRDYWTRLAAGQLTPREL 75
Query: 107 KVTGFEWSAGLASRVR-----TDPVPTHVIAVYLPFFLQRR-----PVFFDIAAVLADLI 156
+ G WS GL R R T H +A + L P + VL D I
Sbjct: 76 RRLGLPWSEGLVMRARLAAQGTLNAARHALAEGVAGNLAGGTHHAFPDHGEGFCVLND-I 134
Query: 157 CIAVYLTFFLQR-----RPVFFD-----------IAAVLADLIHF-MVGINTQPV----- 194
IAV + LQR R D I A +D+ F M G N P+
Sbjct: 135 AIAVRV---LQREGDVGRVALIDCDVHQGNANAVIFAGESDVFTFSMHGRNNYPLRKPPG 191
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L+E++P ILA F+PDLV Y AGVDP+ HD G+L LT G
Sbjct: 192 SLDLELPDGMTDAAYLEILREYVPRILAAFRPDLVFYLAGVDPYVHDRFGRLALTLEG 249
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPDHG GFC++ND+A+A R L R G V +V ++D DVHQ
Sbjct: 116 GTHHAFPDHGEGFCVLNDIAIAVRVLQREGDVGRVALIDCDVHQ 159
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 71/199 (35%), Gaps = 58/199 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ G+ A IF + VFTFSMH NYP RK LD+ + G DA
Sbjct: 158 HQGNANAVIFAGESDVFTFSMHGRNNYPLRKPPGSLDLELPDGMTDAA------------ 205
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+L +LR P I LAA R +V
Sbjct: 206 ------------YLEILREYVPRI-----------------------LAA---FRPDLVF 227
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+ VD VH L+ + GL RD +VL T AGIPV GGY D
Sbjct: 228 YLAGVDPYVHDR--------FGRLALTLEGLRRRDEFVLRTCRQAGIPVTITLSGGYARD 279
Query: 597 IDQLAQRQTIIHRAATHVY 615
+ +RAA V+
Sbjct: 280 RQDTVEAHCNTYRAAREVF 298
>gi|392542891|ref|ZP_10290028.1| histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
piscicida JCM 20779]
Length = 301
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 104/251 (41%), Gaps = 62/251 (24%)
Query: 40 ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQ-ISESIAELVHTKEYVHKFFN 98
E LP HRFP+SK+ K + + K +K + EP+Q I+ +L H YV F N
Sbjct: 10 ELNLPEKHRFPISKYKKLYQRINASKF---AKFIKEPEQKITADALQLCHDSNYVDAFLN 66
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTD---PVPTHVIAVYLPF--------------FLQR 141
G +EK K GF WS L R + A+ F F
Sbjct: 67 GTLSEKAIKKMGFPWSEQLVQRTLISLGGGLTAAQSALEYGFGANLSGGYHHAHRDFGSG 126
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQR--RPVFFD--------IAAVLADL-------IH 184
+F D A V A LI QR R + FD A ++AD IH
Sbjct: 127 FCIFNDWAVVAATLIA--------HQRVERVLIFDCDVHQGDGTATIVADRDDIITCSIH 178
Query: 185 ---------------FMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
F + +NTQ Y AT++E L + ++PD+++Y+AG D +Q D
Sbjct: 179 CESNFPRVKPQSDLDFALPVNTQDAQ-YVATVREALQLAVRLYQPDIILYNAGADVYQGD 237
Query: 230 ELGKLNLTDHG 240
ELG +++ G
Sbjct: 238 ELGHFSVSKQG 248
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFC+ ND A+ A LI H V +VLI D DVHQ
Sbjct: 117 HHAHRDFGSGFCIFNDWAVVAATLIAHQRVERVLIFDCDVHQ 158
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 60/195 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI + + + GDGTA I + T S+HC N+P K SDLD A+ V T DA
Sbjct: 148 RVLIFDCDV--HQGDGTATIVADRDDIITCSIHCESNFPRVKPQSDLDFALPVNTQDA-- 203
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+++ E ++ +RL P+I ++ GA
Sbjct: 204 --------QYVATVREALQ------LAVRLYQPDIILYNA-------GA----------- 231
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
DV+Q L S G+ RD V + A IP+
Sbjct: 232 ------------------DVYQGDE------LGHFSVSKQGVRARDSIVFEYAHHLNIPL 267
Query: 586 ATVTGGGYCADIDQL 600
A GGGY D+D+L
Sbjct: 268 AFALGGGYQRDVDRL 282
>gi|315125963|ref|YP_004067966.1| histone deacetylase [Pseudoalteromonas sp. SM9913]
gi|315014477|gb|ADT67815.1| histone deacetylase protein [Pseudoalteromonas sp. SM9913]
Length = 302
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 64/262 (24%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LP+++ Y + P HRF MSKF++ ++ + +IEP S E+VH
Sbjct: 6 NLPLVYHPNYSFSFDPKHRFVMSKFAQLHQHVKTLGL--AGSNIIEPPHGSVEELEIVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT--------------------- 128
+ Y+H ++ + EK + G WS L +R T P+ T
Sbjct: 64 ENYIHDLWHNRLDEKAMRRIGLPWSQALMNRTFTAPLGTLQTARLALKNGLACHLAGGTH 123
Query: 129 -------------HVIAVYLPFFLQRRPV----FFDI--------AAVLAD----LIC-I 158
+ +A +Q R V FD+ AA+LA C I
Sbjct: 124 HAHSDFGSGFCMVNDLAYTAQTLIQNREVTNVLIFDLDVHQGDGTAAMLAHQPYAFTCSI 183
Query: 159 AVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVI 218
F ++ P DI N + Y + + L +L + PDLV+
Sbjct: 184 HCEKNFPFRKSPSDLDIGLA-----------NNMQDAEYLGIVDDTLQFLLNELNPDLVL 232
Query: 219 YDAGVDPHQHDELGKLNLTDHG 240
YDAGVD Q D LGKL+++ G
Sbjct: 233 YDAGVDIWQEDGLGKLDISWQG 254
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 58/194 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA + P FT S+HC +N+PFRK SDLD+ + DA
Sbjct: 160 LDVHQGDGTAAMLAHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDA---------- 209
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+L + ++ FLL +P++ + AG + + L + G
Sbjct: 210 EYLGIVDDTLQ------FLLNELNPDLVLYD---------AGVDIWQEDGLGKLDISWQG 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
I + RD+ VL ++ PVATV GGGY
Sbjct: 255 IEK---------------------------------RDHLVLKRCLANNTPVATVIGGGY 281
Query: 594 CADIDQLAQRQTII 607
D +LA+R I+
Sbjct: 282 DRDHQRLAKRHGIV 295
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A A+ LI++ V VLI DLDVHQ
Sbjct: 121 GTHHAHSDFGSGFCMVNDLAYTAQTLIQNREVTNVLIFDLDVHQ 164
>gi|443318867|ref|ZP_21048109.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 6406]
gi|442781505|gb|ELR91603.1| deacetylase, histone deacetylase/acetoin utilization protein
[Leptolyngbya sp. PCC 6406]
Length = 278
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCL 518
D R + L W L +R+ I L L+ THHAFPDHGAGFC+
Sbjct: 51 DSQAQRRIGLPWSPNLVRRTCTAVGGTILTAKLALNYGLACNTAGGTHHAFPDHGAGFCI 110
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+AAR L+ +V+++LIVDLDVHQ
Sbjct: 111 FNDLAIAARILLDQNLVQRILIVDLDVHQ 139
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ HLP +L+Q +PDLV+YDAGVD HQ D LGKL +T+ G
Sbjct: 186 YLRQLQTHLPDLLSQVRPDLVLYDAGVDTHQGDRLGKLAMTNTG 229
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 83/206 (40%), Gaps = 58/206 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA+IF DP V TFSMHC N+P KQ SD DV + G D
Sbjct: 130 ILIVDLDVHQGDGTAWIFRDDPRVVTFSMHCAVNFPRLKQISDRDVPLPEGLGDE----- 184
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L Q + + LL P++ ++ D +
Sbjct: 185 -----DYLRQLQTHLPD------LLSQVRPDL-----------------VLYDAGVDTHQ 216
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
R G K+ + + +++ R VL +C+ Y PVA V
Sbjct: 217 GDRLG---KLAMTNTGLYERDR-------WVLKTCIQAGY---------------PVACV 251
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHV 614
GGGY ++ L R +++ RAA V
Sbjct: 252 IGGGYDDNLSALVYRHSLLFRAAATV 277
>gi|170728227|ref|YP_001762253.1| histone deacetylase superfamily protein [Shewanella woodyi ATCC
51908]
gi|169813574|gb|ACA88158.1| histone deacetylase superfamily [Shewanella woodyi ATCC 51908]
Length = 305
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 104/256 (40%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYE-CTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
LP+I+ Y +LP HR+P+ K+ ++++++ D + Q P+ ++ +
Sbjct: 2 LPLIYHPMYSHLSLPEGHRYPIMKYQYLYDFIIKKSETDSNWQQRLAFFSPKALTADEVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH EYV + G + + GF WS L R T T H +A++L
Sbjct: 62 QVHGDEYVEQLMTGTLAANKMRRIGFPWSEELMQRTLTSAAGTVLAAIKAIEHGVAIHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT----- 191
F L + + +A + F LQR + D ++ +H G T
Sbjct: 122 GGYHHAHKDFGSGFCLLNDLVLAAH--FGLQRENI--DKVLIIDSDVHQGDGTATLCQER 177
Query: 192 -----------------QPVS-------------GYQATLKEHLPGILAQFKPDLVIYDA 221
+P S + AT K+ + + +PDL+IYDA
Sbjct: 178 DDIITLSFHCDKNFPARKPDSDLDLPLTRGTDDDSFLATFKQVVEMAVNLHQPDLIIYDA 237
Query: 222 GVDPHQHDELGKLNLT 237
GVD HQ DELG LN++
Sbjct: 238 GVDIHQDDELGYLNIS 253
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA + ++ + KVLI+D DVHQ
Sbjct: 125 HHAHKDFGSGFCLLNDLVLAAHFGLQRENIDKVLIIDSDVHQ 166
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
G++ + ++ I + GDGTA + + + T S HC +N+P RK SDLD+ + G
Sbjct: 148 GLQRENIDKVLIIDSDVHQGDGTATLCQERDDIITLSFHCDKNFPARKPDSDLDLPLTRG 207
Query: 460 TDD 462
TDD
Sbjct: 208 TDD 210
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+D+HQ L L+ +Y RD+++ DT GIPVA V GGGY
Sbjct: 239 VDIHQDDE------LGYLNISTQAIYQRDHFLFDTMKQRGIPVAAVVGGGY 283
>gi|148240071|ref|YP_001225458.1| histone deacetylase family protein [Synechococcus sp. WH 7803]
gi|147848610|emb|CAK24161.1| Histone deacetylase family protein [Synechococcus sp. WH 7803]
Length = 304
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 102/255 (40%), Gaps = 53/255 (20%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P+++ Y LP +HRFPM+KF + L + + + Q+ P + ELVH +
Sbjct: 4 PLVYHEAYSAPLPSSHRFPMAKFRELERCLF-ECGLAHAGQMHRPLPVPRRWLELVHQRS 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL------- 135
Y F + + Q+ G + L R T H +A +L
Sbjct: 63 YHEAFARDRLDRQAQRRIGLPATTPLVQRTWLAVGGTVLTARLALRHGLACHLAGGTHHA 122
Query: 136 -PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ-- 192
P F +F D+A +C V + +R + D+ D + + +
Sbjct: 123 FPNFGSGFCIFNDLA------VCARVLIEQEGLQRVLVVDLDVHQGDATALIFSGDARVF 176
Query: 193 ---------------------PVS------GYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
P+S Y T+ +HLP +L + +P LV+Y+AGVDP
Sbjct: 177 TLSAHAASNFPSRKQVSDLDLPLSDGLEDRAYLQTVGDHLPDVLDRLRPQLVLYNAGVDP 236
Query: 226 HQHDELGKLNLTDHG 240
H+ D LG+L LTD G
Sbjct: 237 HRDDRLGRLALTDLG 251
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L T L QR+ + L L + THHAFP+ G+GFC+
Sbjct: 73 DRQAQRRIGLPATTPLVQRTWLAVGGTVLTARLALRHGLACHLAGGTHHAFPNFGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+ AR LI +++VL+VDLDVHQ
Sbjct: 133 FNDLAVCARVLIEQEGLQRVLVVDLDVHQ 161
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + GD TA IF D VFT S H N+P RKQ SDLD+ + G +D
Sbjct: 152 VLVVDLDVHQGDATALIFSGDARVFTLSAHAASNFPSRKQVSDLDLPLSDGLED 205
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD+ VLD + G+PVATV GGGY A I L +R ++ RAA + GL
Sbjct: 251 GLLQRDHLVLDACLRRGVPVATVIGGGYDAMI-PLVKRHALVFRAAADQARLHGL 304
>gi|416220187|ref|ZP_11625279.1| histone deacetylase family protein [Moraxella catarrhalis 103P14B1]
gi|326566775|gb|EGE16914.1| histone deacetylase family protein [Moraxella catarrhalis 103P14B1]
Length = 301
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 80/192 (41%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GT D
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTGDE----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K+ +N DP++ + AG
Sbjct: 206 --AYLTILGKTLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPV V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAYKAGIPVTVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L + LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTGDEAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|416155844|ref|ZP_11604137.1| histone deacetylase family protein [Moraxella catarrhalis 101P30B1]
gi|416217146|ref|ZP_11624095.1| histone deacetylase family protein [Moraxella catarrhalis 7169]
gi|416239194|ref|ZP_11631744.1| histone deacetylase family protein [Moraxella catarrhalis BC1]
gi|416250103|ref|ZP_11637112.1| histone deacetylase family protein [Moraxella catarrhalis CO72]
gi|326560997|gb|EGE11362.1| histone deacetylase family protein [Moraxella catarrhalis 7169]
gi|326567382|gb|EGE17497.1| histone deacetylase family protein [Moraxella catarrhalis BC1]
gi|326575226|gb|EGE25154.1| histone deacetylase family protein [Moraxella catarrhalis CO72]
gi|326576687|gb|EGE26594.1| histone deacetylase family protein [Moraxella catarrhalis 101P30B1]
Length = 301
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 80/192 (41%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +PAVF FSMH +NYPF K SDLD+ +D GT D
Sbjct: 151 ILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPSDLDIELDDGTGDE----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L + K+ +N DP++ + AG
Sbjct: 206 --AYLTILGKTLPKIIHN---------FDPDMLFYQ---------AGV------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
VL D L LS + G Y RD VL TA AGIPV V
Sbjct: 234 --------DVLATD-------------KLGKLSLSLQGCYERDKLVLTTAYKAGIPVTVV 272
Query: 589 TGGGYCADIDQL 600
GGGY DI+ +
Sbjct: 273 MGGGYSPDIETV 284
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP +HRFPM+K+ L+ D +I + L P+ +SE HT +Y HK G T
Sbjct: 14 LPVSHRFPMAKYDLIPKKLLTDGIITQD-NLFHPELLSEQEILSTHTADYWHKLKTGTLT 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADL------- 155
+KE + G SA L R R T+ A+Y + V AD
Sbjct: 73 DKEIRKIGLPMSASLIKRERYITHATYECALYAKKYGISLSVSGGTHHGFADHGEGFCVF 132
Query: 156 --ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----- 194
+C+A + L +R + D+ A+++A+ + M G P
Sbjct: 133 NDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHGKKNYPFIKPPS 192
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L + LP I+ F PD++ Y AGVD D+LGKL+L+ G
Sbjct: 193 DLDIELDDGTGDEAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQG 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH F DHG GFC+ ND+ +A+ L+ G +++L VDLDVHQ
Sbjct: 117 GTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQ 160
>gi|113970809|ref|YP_734602.1| histone deacetylase superfamily protein [Shewanella sp. MR-4]
gi|113885493|gb|ABI39545.1| histone deacetylase superfamily [Shewanella sp. MR-4]
Length = 300
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LP +HRFP +K+++ + YL+ D + Q P ++ VH
Sbjct: 2 IPLVYHASYSKLALPSHHRFPTTKYARLYQYLL-DNQLAVPAQFHTPSPMTAEDVMQVHQ 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASR----VRTDPVPTHV-----IAVYLPFFLQ 140
++YV +F G + GF WS L R V + H+ IA++L
Sbjct: 61 QDYVEQFIQGSLASTALRRIGFPWSEALVERTLHSVSGTSLTAHLALQTGIALHLTGGYH 120
Query: 141 RRPVFFDIA-AVLADLICIAVYLTFFLQRRPVF-FDIAAVLAD----LIHFMVGINTQPV 194
F + DLI A L Q V FD D L H GI + +
Sbjct: 121 HAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGTATLSHRHQGIISCSI 180
Query: 195 -------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
+ YQ T+++ L ++ +PDL++YDAGVD HQ D
Sbjct: 181 HCKENFPSRKQQSHYDIELTKGADDNAYQETVEQTLELLIRLHQPDLILYDAGVDIHQDD 240
Query: 230 ELGKLNLTDHG 240
+LG L ++ G
Sbjct: 241 DLGHLKISKQG 251
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 86/212 (40%), Gaps = 62/212 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD-A 463
H+ LI + + + GDGTA + + + + S+HC N+P RKQ S D+ + G DD A
Sbjct: 150 HKVLIFDCDV--HQGDGTATLSHRHQGIISCSIHCKENFPSRKQQSHYDIELTKGADDNA 207
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
TV T L+RL P++ + AG
Sbjct: 208 YQETVEQT-----------------LELLIRLHQPDLILYD---------AG-------- 233
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
+D+HQ L L GLY RD VL A +A I
Sbjct: 234 -------------------VDIHQD------DDLGHLKISKQGLYQRDLTVLSMAKAANI 268
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
PVA V GGGY D QL+QR + + AA H++
Sbjct: 269 PVAAVIGGGYSRDELQLSQRHSQLFIAANHLW 300
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ +AAR L+ + KVLI D DVHQ
Sbjct: 120 HHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQ 161
>gi|307941483|ref|ZP_07656838.1| histone deacetylase superfamily protein [Roseibium sp. TrichSKD4]
gi|307775091|gb|EFO34297.1| histone deacetylase superfamily protein [Roseibium sp. TrichSKD4]
Length = 354
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 92/213 (43%), Gaps = 60/213 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
RAL+++ L + GDGTA IF +V TFSMH +NYP RK S+ D+ + G D
Sbjct: 189 RALVID--LDVHQGDGTADIFRHCDSVVTFSMHARKNYPVRKVPSNHDIELPDGASDN-- 244
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+++ L+ R+ + +L+ + P+I ++
Sbjct: 245 -----SYLAHLAARTTE---------VLKRARPDIVFYNA-------------------- 270
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
+D ++ R L L+ GL RD V+ T AGIP+
Sbjct: 271 ----------------GVDPYKEDR------LGRLALSRAGLLQRDELVIQTVRQAGIPL 308
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
A V GGGY DID+LA R +HRAA K +
Sbjct: 309 AGVLGGGYSEDIDELADRHVTLHRAALACAKNQ 341
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+A R + G++ + L++DLDVHQ
Sbjct: 156 GSHHARWKQGAGFCVFNDVAVAIRVMQADGVISRALVIDLDVHQ 199
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+PI+H Y +LP NHRFPM KF + L+ + + + +P+ L H
Sbjct: 41 VPIVHHPAYCASLPANHRFPMDKF-RAVAALIEAEGLLGEGRFYKPRAAPFDWVALAHDP 99
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
YV + F+ + + GF+ +A+R R
Sbjct: 100 VYVDQVFSTNVPKAVAREIGFDIRPDIAARAR 131
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y A L +L + +PD+V Y+AGVDP++ D LG+L L+ G
Sbjct: 244 NSYLAHLAARTTEVLKRARPDIVFYNAGVDPYKEDRLGRLALSRAG 289
>gi|113954553|ref|YP_729977.1| histone deacetylase [Synechococcus sp. CC9311]
gi|113881904|gb|ABI46862.1| histone deacetylase family protein [Synechococcus sp. CC9311]
Length = 304
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 47/253 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+P+++ Y LP +HRFPM+KF + + + D + +Q P E VH +
Sbjct: 3 VPLVYHPAYSAPLPSSHRFPMAKF-RLLSEALTDLGLMTPQQWHRPLPAPRRWLETVHKR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGF---------EWSAGLASRVRTDPVPTHVIAVYL------ 135
Y F G+ + Q+ G W A + + H +A +L
Sbjct: 62 SYHEAFARGRLDRQAQRRIGLPATTPLVQRTWLAVGGTLLTARLALEHGVACHLAGGTHH 121
Query: 136 --PFFLQRRPVFFDIA---------AVLADLICI--------AVYLTFFLQRRPVFFDIA 176
P + +F DIA L L+ + A L F R F
Sbjct: 122 AFPDYGSGFCIFNDIAVSARVLLEEGRLERLMIVDLDVHQGDATALIFADDPRVFTFSAH 181
Query: 177 AV--------LADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
A +D + F G+ Q Y A + E LP +L FKP+LV+Y+AGVDPH+
Sbjct: 182 AASNFPSRKQCSDCDLPFEDGVEDQ---AYVAAIGEALPSLLDSFKPELVLYNAGVDPHR 238
Query: 228 HDELGKLNLTDHG 240
D LG+L L+D G
Sbjct: 239 DDRLGRLCLSDPG 251
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L T L QR+ + L L + THHAFPD+G+GFC+
Sbjct: 73 DRQAQRRIGLPATTPLVQRTWLAVGGTLLTARLALEHGVACHLAGGTHHAFPDYGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A++AR L+ G + +++IVDLDVHQ
Sbjct: 133 FNDIAVSARVLLEEGRLERLMIVDLDVHQ 161
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+M + L + GD TA IF DP VFTFS H N+P RKQCSD D+ + G +D
Sbjct: 152 LMIVDLDVHQGDATALIFADDPRVFTFSAHAASNFPSRKQCSDCDLPFEDGVED 205
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 565 PGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
PGL RD+ V D + IP+A+V GGGY A ++ L +R ++ RAAT + GL
Sbjct: 250 PGLLQRDHLVFDACLRRQIPLASVIGGGYDA-LNPLVKRHALVFRAATDQARLHGL 304
>gi|408373839|ref|ZP_11171532.1| deacetylase [Alcanivorax hongdengensis A-11-3]
gi|407766333|gb|EKF74777.1| deacetylase [Alcanivorax hongdengensis A-11-3]
Length = 313
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 101/250 (40%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ +Y P HRFPM KF + YL R + I + P + ++ VH
Sbjct: 2 LPLVYHPEYSFPFPGAHRFPMEKFGRLHGYL-RGQGIATADNTFRPGRARPALLGRVHCP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQR 141
+YV + ++ ++ G WS L R P+ T +A +L
Sbjct: 61 DYVSAVLENRLDDRARRRMGLPWSEALVKRTCIAPMGTLLTAQLALKQGLACHLAGGTHH 120
Query: 142 RPVFFDIAAVLADLICIAVYLTF--FLQRRPVFFD--------IAAVLAD-------LIH 184
F L + + A L R + FD AA+LAD IH
Sbjct: 121 AYRDFGSGFCLFNDLAFAARLLLDSAAVDRLLIFDCDVHQGDGTAAMLADEPRAFTCSIH 180
Query: 185 -------------FMVGINTQPVSG-YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
VG+ G Y AT+ E L G+L + +P LV+YDAGVD + D
Sbjct: 181 CEKNFPVRKQNSDLDVGLPPGMTDGDYLATVFETLDGLLDRVEPQLVLYDAGVDIYAGDP 240
Query: 231 LGKLNLTDHG 240
LG+L +++ G
Sbjct: 241 LGRLQISEAG 250
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 446 RKQCSD-LDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS 504
R C D + ++ DD R + L W L +R+ + L L +
Sbjct: 56 RVHCPDYVSAVLENRLDDRARRRMGLPWSEALVKRTCIAPMGTLLTAQLALKQGLACHLA 115
Query: 505 --THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D G+GFCL ND+A AAR L+ V ++LI D DVHQ
Sbjct: 116 GGTHHAYRDFGSGFCLFNDLAFAARLLLDSAAVDRLLIFDCDVHQ 160
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ GDGTA + +P FT S+HC +N+P RKQ SDLDV + G D
Sbjct: 159 HQGDGTAAMLADEPRAFTCSIHCEKNFPVRKQNSDLDVGLPPGMTDG 205
>gi|386288827|ref|ZP_10065967.1| deacetylase [gamma proteobacterium BDW918]
gi|385278382|gb|EIF42354.1| deacetylase [gamma proteobacterium BDW918]
Length = 320
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 96/252 (38%), Gaps = 41/252 (16%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
LP++ Y HRFPM KFS FN+L R+ I P ++ + L H
Sbjct: 16 AQLPLVSNPLYSYPFASGHRFPMQKFSLLFNHL-REIGIATQANTYRPGRVRGEVLALAH 74
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFLQ------R 141
+Y+H F N + + G WS L R P T + A + L + +
Sbjct: 75 CPQYIHAFCNNTLSPSANRRMGLPWSESLRQRSLISPNGTFLTAQLALKYGMACHLAGGT 134
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQRRPV----FFDI---------------AAVLADL 182
+D A+ +AV L ++ V FD AV
Sbjct: 135 HHAHYDFASGFCIFNDLAVTARTLLAQKKVQRILIFDCDVHQGDGTARILQSDTAVFTCS 194
Query: 183 IHFM-----------VGINTQPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQH 228
+H + IN G Q L L L +PD+V+YDAGVD ++H
Sbjct: 195 VHCEKNFPVRKARSDLDINVAAGCGDQEYLDIVNAGLSQALRLARPDIVLYDAGVDIYEH 254
Query: 229 DELGKLNLTDHG 240
D LG LN+++ G
Sbjct: 255 DPLGLLNISNAG 266
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 60/215 (27%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K R LI + + + GDGTA I D AVFT S+HC +N+P RK SDLD+ + G
Sbjct: 162 KKVQRILIFDCDV--HQGDGTARILQSDTAVFTCSVHCEKNFPVRKARSDLDINVAAGCG 219
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
D Q + N G+ LRL+ P+I + D G
Sbjct: 220 D---------------QEYLDIVNAGLSQ-ALRLARPDIVLY-------DAG-------- 248
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
+D+++H L +L+ G+ RD VL++ ++
Sbjct: 249 ---------------------VDIYEHD------PLGLLNISNAGIRERDRLVLESCVTQ 281
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
GI VATV GGGY D LA R I+ A ++
Sbjct: 282 GIAVATVIGGGYDRDQLALALRHAIVVEEAAKLFN 316
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
+ NR + L W L QRS + NG FL L+ THHA D +GFC+
Sbjct: 90 SANRRMGLPWSESLRQRS-LISPNGTFLTAQLALKYGMACHLAGGTHHAHYDFASGFCIF 148
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+ AR L+ V+++LI D DVHQ
Sbjct: 149 NDLAVTARTLLAQKKVQRILIFDCDVHQ 176
>gi|359437703|ref|ZP_09227758.1| histone deacetylase [Pseudoalteromonas sp. BSi20311]
gi|359445306|ref|ZP_09235050.1| hypothetical protein P20439_1372 [Pseudoalteromonas sp. BSi20439]
gi|358027642|dbj|GAA64007.1| histone deacetylase [Pseudoalteromonas sp. BSi20311]
gi|358040872|dbj|GAA71299.1| hypothetical protein P20439_1372 [Pseudoalteromonas sp. BSi20439]
Length = 302
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 102/262 (38%), Gaps = 64/262 (24%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LP+++ Y + P HRF MSKF++ ++ + + EP S E+VH
Sbjct: 6 NLPLVYHPNYSFSFDPKHRFVMSKFAQLHQHVKTLGL--AGSNITEPPHGSVEELEIVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT--------------------- 128
+ Y+H ++ + EK + G WS L +R T P+ T
Sbjct: 64 ENYIHDLWHNRLDEKAMRRIGLPWSQALMNRTFTAPLGTLQTARLALKNGLACHLAGGTH 123
Query: 129 -------------HVIAVYLPFFLQRRPV----FFDI--------AAVLAD----LIC-I 158
+ +A +Q R V FD+ AA+LA C I
Sbjct: 124 HAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDLDVHQGDGTAAMLAHQPYAFTCSI 183
Query: 159 AVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVI 218
F ++ P DI N + Y + + L +L + PDLV+
Sbjct: 184 HCEKNFPFRKSPSDLDIGLA-----------NNMQDAEYLGIVDDTLQFLLNELNPDLVL 232
Query: 219 YDAGVDPHQHDELGKLNLTDHG 240
YDAGVD Q D LGKL+++ G
Sbjct: 233 YDAGVDIWQEDGLGKLDISWQG 254
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 58/194 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA + P FT S+HC +N+PFRK SDLD+ + DA
Sbjct: 160 LDVHQGDGTAAMLAHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDA---------- 209
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+L + ++ FLL +P++ + AG + + L + G
Sbjct: 210 EYLGIVDDTLQ------FLLNELNPDLVLYD---------AGVDIWQEDGLGKLDISWQG 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
I + RD+ VL ++ PVATV GGGY
Sbjct: 255 IEK---------------------------------RDHLVLKRCLANNTPVATVIGGGY 281
Query: 594 CADIDQLAQRQTII 607
D +LA+R I+
Sbjct: 282 DRDHQRLAKRHGIV 295
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A A+ LI++ V VLI DLDVHQ
Sbjct: 121 GTHHAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDLDVHQ 164
>gi|443243613|ref|YP_007376838.1| deacetylase [Nonlabens dokdonensis DSW-6]
gi|442801012|gb|AGC76817.1| deacetylase [Nonlabens dokdonensis DSW-6]
Length = 307
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL+ND A+AARYL HG+ KVLIVDLDVHQ
Sbjct: 118 GTHHAYTDHGEAFCLLNDQAIAARYLQHHGLAEKVLIVDLDVHQ 161
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA IF D +VFTFSMH NYPF+K+ SDLD+AI G +D
Sbjct: 152 VLIVDLDVHQGNGTAEIFQNDDSVFTFSMHGAGNYPFKKEQSDLDIAIPDGYED 205
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + LK LP ++AQ +PD + Y GVD + D+LGKL++T G
Sbjct: 208 YLSELKNTLPDLIAQEQPDFIFYLCGVDVLESDKLGKLSMTLDG 251
>gi|433777117|ref|YP_007307584.1| deacetylase, histone deacetylase/acetoin utilization protein
[Mesorhizobium australicum WSM2073]
gi|433669132|gb|AGB48208.1| deacetylase, histone deacetylase/acetoin utilization protein
[Mesorhizobium australicum WSM2073]
Length = 300
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 81/204 (39%), Gaps = 58/204 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA I +P FTFSMH RNYP RK SDLDVA+ GT G+
Sbjct: 152 ILVVDLDVHQGDGTADILGDEPRAFTFSMHGERNYPARKIASDLDVALPDGT---GDAAY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T L + S + R + +F + AG
Sbjct: 209 VERLDTILLELSAQARWDIVF----------------------YNAG------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+DVH R L LS GL RD V+ + GIPV V
Sbjct: 234 --------------VDVHAEDR------LGRLSLSDKGLRARDKMVIGHFRALGIPVCGV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAAT 612
GGGY D+ LA R I+ A+
Sbjct: 274 IGGGYSTDVPALAARHAILFEVAS 297
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC ND+A+A+ L+ G +L+VDLDVHQ
Sbjct: 118 GSHHARRAQGAGFCTFNDVAVASLVLLEEGAAHSILVVDLDVHQ 161
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 210 AQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
AQ + D+V Y+AGVD H D LG+L+L+D G
Sbjct: 221 AQARWDIVFYNAGVDVHAEDRLGRLSLSDKG 251
>gi|114563800|ref|YP_751313.1| histone deacetylase superfamily protein [Shewanella frigidimarina
NCIMB 400]
gi|114335093|gb|ABI72475.1| histone deacetylase superfamily [Shewanella frigidimarina NCIMB
400]
Length = 307
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 41/248 (16%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + + LP HRFP +K+ + + ++ +++ + + P IS+ VH +Y
Sbjct: 8 VYHASYSQLALPSTHRFPTTKYHNLYQHALKQQLLFEQYRHT-PTPISKDTLYTVHCPQY 66
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGL---------ASRVRTDPVPTHVIAVYLPFFLQRRP 143
V +F NG K Q+ GF WS L +R+ + H IAV+L
Sbjct: 67 VEQFINGALDHKAQRRIGFPWSQELVTRTLHAVNGTRLCAELALDHGIAVHLTGGYHHAH 126
Query: 144 VFFDIAAVLADLICIAVYLTFFLQR--RPVFFDIAAVLADLIHFMVGINTQPVS------ 195
F + + + IA R + + FD D + N +S
Sbjct: 127 YDFGSGFCIFNDLVIAARSAIDSGRADKVLIFDCDVHQGDGTATLTQGNPDIISCSIHCA 186
Query: 196 -----------------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELG 232
Y +++ LP ++ +PDL+IYDAGVD HQHD+LG
Sbjct: 187 QNFPSRKQQSDHDIALDKGCTDKQYLEHIQQILPYLIRIHQPDLIIYDAGVDIHQHDDLG 246
Query: 233 KLNLTDHG 240
++++ G
Sbjct: 247 YFSISNLG 254
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 58/202 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA + +P + + S+HC +N+P RKQ SD D+A+D G D
Sbjct: 163 HQGDGTATLTQGNPDIISCSIHCAQNFPSRKQQSDHDIALDKGCTD-------------- 208
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q E ++ I +L+R+ P++ + AG
Sbjct: 209 KQYLEHIQQ--ILPYLIRIHQPDLIIYD---------AG--------------------- 236
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+D+HQH L S G+ RD V+ A GIP+A V GGGY
Sbjct: 237 ------VDIHQHD------DLGYFSISNLGILARDKQVISIAKMHGIPLAAVIGGGYSRS 284
Query: 597 IDQLAQRQTIIHRAATHVYKER 618
+L R + + AA ++ +
Sbjct: 285 EAELTIRHSQLLVAANELWASQ 306
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST---HHAFPDH 512
I+ D R + W L R+ N L L D I T HHA D
Sbjct: 71 INGALDHKAQRRIGFPWSQELVTRTLHAVNGTRLCAELAL-DHGIAVHLTGGYHHAHYDF 129
Query: 513 GAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
G+GFC+ ND+ +AAR I G KVLI D DVHQ
Sbjct: 130 GSGFCIFNDLVIAARSAIDSGRADKVLIFDCDVHQ 164
>gi|303290877|ref|XP_003064725.1| histone deacetylase [Micromonas pusilla CCMP1545]
gi|226453751|gb|EEH51059.1| histone deacetylase [Micromonas pusilla CCMP1545]
Length = 385
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 83/215 (38%), Gaps = 60/215 (27%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ L + GDGTA I + D VF HC N+P +K + D+A+ GT D
Sbjct: 231 RVLIVD--LDVHQGDGTAAIVEDDDRVFVLDAHCADNFPHKKATASRDIALAKGTGDD-- 286
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
++ E +R + F D G
Sbjct: 287 --------AYMKAVEEGLREV-------------LEEFKPQLVLYDAG------------ 313
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
+DVH+ +L LS GL R+ VLDT + GIP+
Sbjct: 314 -----------------VDVHE------ADALGGLSLTDEGLIRREALVLDTVVGRGIPI 350
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
A GGGY AD+ LA+R ++H A +Y+ L
Sbjct: 351 AGFVGGGYDADVAALARRHAVLHHVAREIYESNRL 385
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLS-DPEINRFS-THHAFPDHGAGFCL 518
DD +R + L W L +R+ + I L L+ +N THHA HG+GFC+
Sbjct: 153 DDGASRKIGLPWSEDLVERTLHEVSGTILTADLALTCGMAMNTAGGTHHAHRAHGSGFCI 212
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+A+ A+ +++ G V +VLIVDLDVHQ
Sbjct: 213 LNDLAVTAKRVLQRGAVERVLIVDLDVHQ 241
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++E L +L +FKP LV+YDAGVD H+ D LG L+LTD G
Sbjct: 288 YMKAVEEGLREVLEEFKPQLVLYDAGVDVHEADALGGLSLTDEG 331
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV-- 87
LPI++ Y + LP HRFPM+ F + L+R+ V K L +P + + S EL+
Sbjct: 80 LPIVYHPSYSKPALPTGHRFPMTVFKALYERLIREGVAVPGKNLFQPAR-APSREELLAA 138
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
H + YV F G + + G WS L R
Sbjct: 139 HCETYVDAFCVGALDDGASRKIGLPWSEDLVER 171
>gi|308812538|ref|XP_003083576.1| Histone deacetylase superfamily (ISS) [Ostreococcus tauri]
gi|116055457|emb|CAL58125.1| Histone deacetylase superfamily (ISS), partial [Ostreococcus tauri]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 91/230 (39%), Gaps = 76/230 (33%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522
R + L W L +R+ M +G L L THHA G GFC++ND+
Sbjct: 123 REIGLPWSDVLVERT-LMEVSGTMLTVEMALECGLAVNTAGGTHHAKGTRGGGFCILNDL 181
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ--------------------------------HTR 550
A A+ ++ G + +V+IVDLDVHQ TR
Sbjct: 182 ATASLAVLNSGRLSRVMIVDLDVHQGDGTAEILENEWHRCYTFSAHAASNFPARKARSTR 241
Query: 551 SIPVPS-------LTVLSSCV--------PGLYMRDYYVLDTAISA-------------- 581
+ +P ++V+SS + P L + D V TA A
Sbjct: 242 DVELPRSMNDDEYMSVVSSALRESLEDFRPELVIYDAGVDVTANDALGHLDLTFEGLYRR 301
Query: 582 -----------GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GIPVA V GGGY D+D++A R ++HR A ++ + GL
Sbjct: 302 ERMVLDTCLGSGIPVAGVVGGGYSPDLDEIANRHAVLHRVAQEMFTDHGL 351
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVI---DKSKQLIEPQQ--ISESIA 84
+P++H + Y TLP HRFPM F + + L R+ ++ D S P + E +A
Sbjct: 41 VPVVHHDSYSAPTLPRGHRFPMGVFQRVRDALAREGIVRVGDSSSNAFSPSRRPTFEELA 100
Query: 85 ELVHTKEYVHKFFNGKTTE-KEQKVTGFEWSAGLASRV 121
H++E+ + + + K + G WS L R
Sbjct: 101 -AAHSEEWTRTATSSEGPDAKRLREIGLPWSDVLVERT 137
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L L F+P+LVIYDAGVD +D LG L+LT G
Sbjct: 254 YMSVVSSALRESLEDFRPELVIYDAGVDVTANDALGHLDLTFEG 297
>gi|90420420|ref|ZP_01228327.1| putative histone deacetylase protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90335148|gb|EAS48901.1| putative histone deacetylase protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 300
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 86/207 (41%), Gaps = 62/207 (29%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ + + GDGTA IF+ + VFT S+H RNYP RK SDLDV + GT DA
Sbjct: 151 RVLIVDCDV--HQGDGTARIFENERRVFTLSLHGARNYPVRKAQSDLDVPLADGTGDA-- 206
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMAL 524
+L + LR S P+I ++ D G ++D L
Sbjct: 207 --------DYLDALVPALAEG------LRRSLPDIVFYNAGVDPHEDDRLGRLALSDAGL 252
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
A R TV+ +C RD GIP
Sbjct: 253 AER----------------------------DRTVIGTC------RDV---------GIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAA 611
VA V GGGY DID LA R +I+HR A
Sbjct: 270 VACVIGGGYSRDIDALAHRHSILHRVA 296
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPIIH ++ HRFPMSKFS+ LV D ++ EP ++ L H
Sbjct: 3 LPIIHHPAFDADFDAAHRFPMSKFSRLAEILVEDGLV-APGGYHEPAPAPQNWLRLAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
YV + + +K GF +A R R
Sbjct: 62 LYVDQVLFSAVPPQMEKAIGFRVDEKVALRSR 93
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAGF + ND+A+AA L+ G +VLIVD DVHQ
Sbjct: 118 GSHHAARDCGAGFSVFNDVAVAASLLLADGDAGRVLIVDCDVHQ 161
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 214 PDLVIYDAGVDPHQHDELGKLNLTDHG 240
PD+V Y+AGVDPH+ D LG+L L+D G
Sbjct: 225 PDIVFYNAGVDPHEDDRLGRLALSDAG 251
>gi|392556279|ref|ZP_10303416.1| histone deacetylase [Pseudoalteromonas undina NCIMB 2128]
Length = 302
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 102/262 (38%), Gaps = 64/262 (24%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LP+++ Y + P HRF MSKF++ ++ + + EP S E+VH
Sbjct: 6 NLPLVYHPNYSFSFDPKHRFVMSKFAQLHQHVKTLGL--AGSNITEPPHGSVEELEIVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT--------------------- 128
+ Y+H ++ + EK + G WS L +R T P+ T
Sbjct: 64 ENYIHDLWHNRLDEKAMRRIGLPWSQALMNRTFTAPLGTLQTARLALKNGLACHLAGGTH 123
Query: 129 -------------HVIAVYLPFFLQRRPV----FFDI--------AAVLAD----LIC-I 158
+ +A +Q R V FD+ AA+L+ C I
Sbjct: 124 HAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDLDVHQGDGTAAMLSHQPYAFTCSI 183
Query: 159 AVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVI 218
F ++ P DI N + Y + + L +L + PDLV+
Sbjct: 184 HCEKNFPFRKSPSDLDIGLA-----------NNMQDAEYLGIVDDTLQFLLNELNPDLVL 232
Query: 219 YDAGVDPHQHDELGKLNLTDHG 240
YDAGVD Q D LGKL+++ G
Sbjct: 233 YDAGVDIWQEDGLGKLDISWQG 254
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 59/200 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA + P FT S+HC +N+PFRK SDLD+ + DA
Sbjct: 160 LDVHQGDGTAAMLSHQPYAFTCSIHCEKNFPFRKSPSDLDIGLANNMQDA---------- 209
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+L + ++ FLL +P++ + AG + + L + G
Sbjct: 210 EYLGIVDDTLQ------FLLNELNPDLVLYD---------AGVDIWQEDGLGKLDISWQG 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
I + RD+ VL ++ PVATV GGGY
Sbjct: 255 IEK---------------------------------RDHLVLKRCLANNTPVATVIGGGY 281
Query: 594 CADIDQLAQRQTI-IHRAAT 612
D +LA+R I I +AA+
Sbjct: 282 DRDHQRLAKRHGIVIEQAAS 301
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A A+ LI++ V VLI DLDVHQ
Sbjct: 121 GTHHAHSDFGSGFCMVNDLAFTAQTLIQNREVTNVLIFDLDVHQ 164
>gi|88809136|ref|ZP_01124645.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. WH 7805]
gi|88787078|gb|EAR18236.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. WH 7805]
Length = 304
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P+++ Y LP +HRFPM+KF + L D + S Q+ P + ELVH +
Sbjct: 4 PLVYHEAYSAPLPSSHRFPMAKFRELERCLF-DCGLADSSQMHRPLPVPRRWLELVHQRA 62
Query: 92 YVHKFFNGKTTEKEQKVTGF---------EWSAGLASRVRTDPVPTHVIAVYL------- 135
Y F + + Q+ G W A + + H +A +L
Sbjct: 63 YHEAFARDRLDRQAQRRIGLPATTPLVRRTWIAVGGTLLTARLALRHGLACHLAGGTHHA 122
Query: 136 -PFFLQRRPVFFDIAAVLADLI-----------------CIAVYLTFFLQRRPVFFDIAA 177
P F +F D+A LI A L F R F A
Sbjct: 123 FPDFGSGFCIFNDLAVCARVLIEQDGLQRVLVVDLDVHQGDATALIFSGDERVFTFSAHA 182
Query: 178 V--------LADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
++DL + G+ Y T+ +HLP +L + +P LV+Y+AGVDPH+
Sbjct: 183 ASNFPSRKQVSDLDLSLRDGLEDW---DYLQTIGDHLPELLDRQRPQLVLYNAGVDPHRD 239
Query: 229 DELGKLNLTDHG 240
D LG+L LT+ G
Sbjct: 240 DRLGRLCLTNLG 251
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPD G+GFC+ ND+A+ AR LI +++VL+VDLDVHQ
Sbjct: 118 GTHHAFPDFGSGFCIFNDLAVCARVLIEQDGLQRVLVVDLDVHQ 161
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + GD TA IF D VFTFS H N+P RKQ SDLD+++ G +D
Sbjct: 152 VLVVDLDVHQGDATALIFSGDERVFTFSAHAASNFPSRKQVSDLDLSLRDGLED 205
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD+ VLD + GIPVA+V GGGY A I L +R ++ RAA + GL
Sbjct: 251 GLLQRDHLVLDACLRRGIPVASVIGGGYDAMI-PLVKRHALVFRAAADQARLHGL 304
>gi|332532061|ref|ZP_08407944.1| putative histone deacetylase family protein [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038402|gb|EGI74846.1| putative histone deacetylase family protein [Pseudoalteromonas
haloplanktis ANT/505]
Length = 302
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 42/251 (16%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y + P HRF MSKF+ + ++ +I L+EP + ELVH
Sbjct: 6 HLPLVYHPNYSFSFDPKHRFVMSKFAHLYQHVAELGLI--GSNLVEPILGTPEPLELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF--- 137
Y+ ++ + EK + G WS L +R T T H IA +L
Sbjct: 64 DNYIQDLWHNRLDEKAMRRIGLPWSKELMARTFTAAQGTLQTARLALKHGIACHLAGGTH 123
Query: 138 -----FLQRRPVFFDIAAVLADLI---CIAVYLTF------------FLQRRPVFFDIAA 177
F + D+A LI + L F LQ +P + +
Sbjct: 124 HAHNDFGSGFCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQPYAYTCSI 183
Query: 178 VLADLIHFM-------VGI-NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
F +G+ N Y A + E L +L + P LV+YDAGVD Q D
Sbjct: 184 HCEKNFPFRKSASDLDIGLANNMKDDEYLAIVDETLSYLLKELNPSLVLYDAGVDIWQGD 243
Query: 230 ELGKLNLTDHG 240
LGKL+++ G
Sbjct: 244 GLGKLDISWDG 254
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 58/194 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA + P +T S+HC +N+PFRK SDLD+ + D
Sbjct: 160 LDVHQGDGTAAMLQHQPYAYTCSIHCEKNFPFRKSASDLDIGLANNMKDD---------- 209
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+L+ E + +LL+ +P + + AG + L + G
Sbjct: 210 EYLAIVDETLS------YLLKELNPSLVLYD---------AGVDIWQGDGLGKLDISWDG 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
I ++ D+ VL + PVATV GGGY
Sbjct: 255 IAKR---------------------------------DHLVLKRCLEHNTPVATVIGGGY 281
Query: 594 CADIDQLAQRQTII 607
D +LA+R I+
Sbjct: 282 DRDHLRLAKRHAIV 295
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A + LI G V VLI DLDVHQ
Sbjct: 121 GTHHAHNDFGSGFCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQ 164
>gi|255083386|ref|XP_002504679.1| histone deacetylase [Micromonas sp. RCC299]
gi|226519947|gb|ACO65937.1| histone deacetylase [Micromonas sp. RCC299]
Length = 293
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 62/216 (28%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAG 464
R LI++ L + GDGTA DP ++T S+HC N+P +K S DVA+ GT DDA
Sbjct: 139 RVLIVD--LDVHQGDGTASTTAADPGIYTLSVHCEDNFPAKKSTSSRDVALPTGTGDDAY 196
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+T + E + +G L L D ++ H D G GF L ++
Sbjct: 197 IKTTE-------AALRESIEEHGPQLVLY---DAGVDV----HGADDLG-GFNLTDE--- 238
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
G++R+ + VLDT + GIP
Sbjct: 239 --------GLIRR---------------------------------EALVLDTCVGRGIP 257
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
VA V GGGY D++ LA+R I+H A +++ L
Sbjct: 258 VAAVVGGGYDKDLEALARRHCILHHVAREIFESNKL 293
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL--VHTKEYVHKFFNGK 100
+P HRFPM F + + L+R+ V K L +P ++ S+ EL VH +EYV+KF G
Sbjct: 1 MPEGHRFPMPVFREIYRRLLREGVAVPGKNLFQPARMP-SLEELTAVHDEEYVNKFMIGA 59
Query: 101 TTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
+++E + G W+ L R ++ T + A
Sbjct: 60 MSDEELRRMGLPWTEDLVERTLSEVSGTMLCA 91
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLS-DPEINRFS-THHAFPDHGAGFCLMNDMA 523
R + L W L +R+ + + L L+ +N THHA H +G+C+ ND+A
Sbjct: 66 RRMGLPWTEDLVERTLSEVSGTMLCADLALTCGLAVNTAGGTHHAHRSHASGYCIFNDLA 125
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ A+ +I G V +VLIVDLDVHQ
Sbjct: 126 VTAKRVIARGAVERVLIVDLDVHQ 149
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T + L + + P LV+YDAGVD H D+LG NLTD G
Sbjct: 196 YIKTTEAALRESIEEHGPQLVLYDAGVDVHGADDLGGFNLTDEG 239
>gi|383453278|ref|YP_005367267.1| histone deacetylase family protein [Corallococcus coralloides DSM
2259]
gi|380727969|gb|AFE03971.1| histone deacetylase family protein [Corallococcus coralloides DSM
2259]
Length = 299
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 95/254 (37%), Gaps = 53/254 (20%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H ++Y LP HRFPM K+ + ++ ++ I E + E VHT Y
Sbjct: 3 VFHIDRYLVPLPDGHRFPMEKY-RLLREILLERGILPLAVFHEAPRAERGELEHVHTPRY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAV-----------------YL 135
+ FF GK T+ E + GF WS L R T A
Sbjct: 62 LDAFFGGKLTDAELRRLGFPWSLRLVDNARASVGGTLAAARAALEDGFGANLAGGTHHAF 121
Query: 136 PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLAD----LI 183
P + VF DIA + I V RR V D+ AAV A
Sbjct: 122 PDHGEGFCVFNDIA------VAIRVLQAEGAIRRAVVVDLDVHQGNGTAAVFAGDPSVFT 175
Query: 184 HFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
M G + P + Y A L HLP +L DL+ + AGVDP
Sbjct: 176 FSMHGEHNFPFRKHASHLDLGLEDGVGDAEYLAVLDAHLPHVLESAHADLLFFQAGVDPL 235
Query: 227 QHDELGKLNLTDHG 240
+ D LG+L+LT G
Sbjct: 236 EEDTLGRLSLTHAG 249
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
THHAFPDHG GFC+ ND+A+A R L G +R+ ++VDLDVHQ + V
Sbjct: 116 GTHHAFPDHGEGFCVFNDIAVAIRVLQAEGAIRRAVVVDLDVHQGNGTAAV 166
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RA++++ L + G+GTA +F DP+VFTFSMH N+PFRK S LD+ ++ G DA
Sbjct: 149 RAVVVD--LDVHQGNGTAAVFAGDPSVFTFSMHGEHNFPFRKHASHLDLGLEDGVGDA 204
>gi|336311111|ref|ZP_08566078.1| histone deacetylase/AcuC/AphA family protein [Shewanella sp. HN-41]
gi|335865327|gb|EGM70353.1| histone deacetylase/AcuC/AphA family protein [Shewanella sp. HN-41]
Length = 302
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 60/214 (28%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K H LI + + + GDG+A + + + + S+HC N+P RKQ S D+ + G D
Sbjct: 149 KQLHSVLIFDCDV--HQGDGSATLSHRHNGIISCSIHCKENFPSRKQSSHYDIELSKGVD 206
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
D ++ + Q L+R+ P++ + AG
Sbjct: 207 DKA-------YIETVEQ---------TLALLIRIHQPDLILYD---------AG------ 235
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
+D+HQ+ L +L+ GL+ RD VL A SA
Sbjct: 236 ---------------------VDIHQN------DDLGLLNISQEGLFRRDLTVLSIAKSA 268
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
IP+A V GGGY D QL+QR + + AA H++
Sbjct: 269 NIPIAAVIGGGYSRDALQLSQRHSQLFIAANHLW 302
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 99/251 (39%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LP +H+FP +K++ YL D + Q P ++ VH
Sbjct: 4 IPLVYHASYSKLALPSHHKFPTTKYANLRQYLF-DNQLATPAQFHAPIAMTAQDVMQVHQ 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
KEYV +F G + GF WS L R T H I+++L
Sbjct: 63 KEYVEQFITGTLPTMALRRIGFPWSEALVERTLHSVAGTTLTASLAIEHGISLHLTGGYH 122
Query: 141 RRPVFFDIA-AVLADLICIAVYLTFFLQRRPVF-FDIAAVLAD----LIHFMVGINTQPV 194
F + DLI A + Q V FD D L H GI + +
Sbjct: 123 HAHYDFGSGYCIFNDLIIAAQKVIAAKQLHSVLIFDCDVHQGDGSATLSHRHNGIISCSI 182
Query: 195 -------------------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
Y T+++ L ++ +PDL++YDAGVD HQ+D
Sbjct: 183 HCKENFPSRKQSSHYDIELSKGVDDKAYIETVEQTLALLIRIHQPDLILYDAGVDIHQND 242
Query: 230 ELGKLNLTDHG 240
+LG LN++ G
Sbjct: 243 DLGLLNISQEG 253
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ +AA+ +I + VLI D DVHQ
Sbjct: 122 HHAHYDFGSGYCIFNDLIIAAQKVIAAKQLHSVLIFDCDVHQ 163
>gi|113867397|ref|YP_725886.1| histone deacetylase family deacetylase [Ralstonia eutropha H16]
gi|113526173|emb|CAJ92518.1| Deacetylase, histone deacetylase family [Ralstonia eutropha H16]
Length = 369
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 455 AIDVGTDDAG-NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAF 509
A GT DA R + W + +RS R+ G + R + E +N THHA+
Sbjct: 125 AASAGTLDAARQREIGFPWSEAMVERSR--RSAGATIEACRTALREGIAVNLAGGTHHAY 182
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
D G GFC+ ND A+AAR L R G VR+V +VDLDVHQ + + PS+ LS
Sbjct: 183 ADKGGGFCVFNDAAIAARVLQRDGAVRRVAVVDLDVHQGNGTASILQGDPSVFTLS 238
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I DP+VFT S+H +NYPFRK+ SDLDV + G DD
Sbjct: 214 VDLDVHQGNGTASILQGDPSVFTLSLHGEKNYPFRKEASDLDVGLPDGCDD 264
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEYVHKFFNGK 100
LPP HRFPM K+S ++RD V + +L+E + + L HT YV G
Sbjct: 76 LPPGHRFPMRKYS-----MLRDAVAAQVPGLRLVEAPRAGDDALLLAHTPGYVQAASAGT 130
Query: 101 TTEKEQKVTGFEWSAGLASRVR 122
Q+ GF WS + R R
Sbjct: 131 LDAARQREIGFPWSEAMVERSR 152
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ L + ++F P+L+IY AG DPH+ D LG+L LT G
Sbjct: 267 YAQALQAALDTLFSRFDPELIIYLAGADPHEGDRLGRLRLTLAG 310
>gi|421888007|ref|ZP_16319126.1| Histone deacetylase [Ralstonia solanacearum K60-1]
gi|378966642|emb|CCF95874.1| Histone deacetylase [Ralstonia solanacearum K60-1]
Length = 324
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 63/258 (24%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R+++ + L+ E + + L H +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERIAAEVPGLVLYEAPRAGDDALLLAHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFFLQRRP 143
VH GK Q+ GF WS + R R T IAV L
Sbjct: 62 VHAVGAGKLDPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHH-- 119
Query: 144 VFFDIAAVLADLICI---AVYLTFFLQRRP-----------VFFDI------AAVLADLI 183
+ D C+ A + ++QRRP V D+ A++L D
Sbjct: 120 AYADKGGGF----CVFNDAAIASRWMQRRPGRAQEDFPVAIVDLDVHQGNGTASILRDDA 175
Query: 184 H-FMVGINTQ----------------PVSGYQATLKEHLPGIL----AQFKPDLVIYDAG 222
F + ++ + P A E L G L A+F P L+IY AG
Sbjct: 176 SVFTLSLHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDTLAARFAPRLIIYLAG 235
Query: 223 VDPHQHDELGKLNLTDHG 240
DPH+ D LG+L LT G
Sbjct: 236 ADPHEGDRLGRLKLTMDG 253
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSLHGEKNYPFRKEASDLDVGLPDGCGDA 208
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+A+R++ R G ++ V IVDLDVHQ
Sbjct: 131 FNDAAIASRWMQRRPGRAQEDFPVAIVDLDVHQ 163
>gi|332878787|ref|ZP_08446502.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683138|gb|EGJ56020.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 276
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 490 LFLLRLSDPEIN-RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
L+ LR ++ N THHAF D G GFC++ND A+AA YL+ H VRKVLI+DLDVHQ
Sbjct: 82 LWALRTAEVGFNIAGGTHHAFSDRGEGFCMLNDQAVAAAYLLAHTAVRKVLIIDLDVHQ 140
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + G+GTA IF DP VFTFSMH NYPF K+ SD D+A+ GT DA +V
Sbjct: 131 VLIIDLDVHQGNGTAEIFRHDPRVFTFSMHAEGNYPFVKEQSDRDIALPTGTTDAAYLSV 190
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 90/234 (38%), Gaps = 48/234 (20%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
M K++ L+ + + D + P ++S L HT +YVHKF + + + KE G
Sbjct: 1 MQKYALLPQQLLHEGIADPAD-FRTPSKVSLETLCLAHTPDYVHKFVHLQLSHKEALPIG 59
Query: 111 FEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA--------------VLADLI 156
F + L R T T A++ L+ V F+IA +L D
Sbjct: 60 FVQNQQLVDRELTLVQGTIEAALWA---LRTAEVGFNIAGGTHHAFSDRGEGFCMLNDQA 116
Query: 157 CIAVYLTFFLQRRPVF---FDI--AAVLADLIH-----FMVGINTQ-------------- 192
A YL R V D+ A++ F ++ +
Sbjct: 117 VAAAYLLAHTAVRKVLIIDLDVHQGNGTAEIFRHDPRVFTFSMHAEGNYPFVKEQSDRDI 176
Query: 193 --PV----SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
P + Y + L LP I+ +PD V Y +GVD D+LGKL+L+ G
Sbjct: 177 ALPTGTTDAAYLSVLTSVLPEIITAHQPDFVFYQSGVDVLSSDKLGKLSLSVQG 230
>gi|393762659|ref|ZP_10351285.1| histone deacetylase [Alishewanella agri BL06]
gi|392606281|gb|EIW89166.1| histone deacetylase [Alishewanella agri BL06]
Length = 312
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 80/198 (40%), Gaps = 58/198 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA +F + + T S+HC +N+P RKQ SD D+ +D DA
Sbjct: 159 LDVHQGDGTAALFTANSGIITASIHCEKNFPARKQRSDWDIGLDKDCTDA---------- 208
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
++L S+ + N LLR PE+ + D G
Sbjct: 209 SYLEAVSQSLDN------LLRWYQPELVIY-------DAG-------------------- 235
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+D+HQ L +L G+ RD VL AGIPVA V GGGY
Sbjct: 236 ---------VDIHQQD------DLGLLQISTAGVLARDTLVLQRCRDAGIPVAAVIGGGY 280
Query: 594 CADIDQLAQRQTIIHRAA 611
D++ L + +AA
Sbjct: 281 QRDLNALTAVHLQLFKAA 298
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 41/247 (16%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
I H E LP NHR+P+ K+ + L+ V + ++P ++ + +H Y
Sbjct: 9 IYHPCYSELALPANHRYPIGKYRSLYQQLLALGVPESG--FLQPAPVTAAALSTLHDPAY 66
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL------PF 137
V G K + GF WS L R T T H +A++L F
Sbjct: 67 VEALCQGTLDSKAMRRIGFPWSEQLIKRSLTSLGGTLLCAEQALQHGLALHLSGGYHHAF 126
Query: 138 FLQRRP--VFFDIA--AVLADLICIAVYLTFFLQ------RRPVFFDIAAVLADLIH--- 184
+ + +F D+A A+ + L F L +F + ++ IH
Sbjct: 127 YAEGSGFCLFNDLAFAALSMQQQGVGPVLIFDLDVHQGDGTAALFTANSGIITASIHCEK 186
Query: 185 ----------FMVGINTQPV-SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGK 233
+ +G++ + Y + + L +L ++P+LVIYDAGVD HQ D+LG
Sbjct: 187 NFPARKQRSDWDIGLDKDCTDASYLEAVSQSLDNLLRWYQPELVIYDAGVDIHQQDDLGL 246
Query: 234 LNLTDHG 240
L ++ G
Sbjct: 247 LQISTAG 253
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF G+GFCL ND+A AA + + G V VLI DLDVHQ
Sbjct: 123 HHAFYAEGSGFCLFNDLAFAALSMQQQG-VGPVLIFDLDVHQ 163
>gi|406597491|ref|YP_006748621.1| histone deacetylase family protein [Alteromonas macleodii ATCC
27126]
gi|407684505|ref|YP_006799679.1| histone deacetylase family protein [Alteromonas macleodii str.
'English Channel 673']
gi|406374812|gb|AFS38067.1| histone deacetylase family protein [Alteromonas macleodii ATCC
27126]
gi|407246116|gb|AFT75302.1| histone deacetylase family protein [Alteromonas macleodii str.
'English Channel 673']
Length = 300
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 58/203 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA + + D +FT S+H +N+P RKQCSD+D+ +D GT+D
Sbjct: 152 VLIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQCSDIDIGLDKGTEDD----- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L Q ++R P+
Sbjct: 207 --EYLTTLEQ---------ALTMVMRQFQPD----------------------------- 226
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+I D V H L L G+Y RD V A G+P+A V
Sbjct: 227 ---------AIIYDAGVDVHVND----DLGHLHISTQGVYERDTQVFALAERLGVPIAAV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAA 611
GGGY DI L + ++RAA
Sbjct: 274 IGGGYQRDIAALVEVHIQLYRAA 296
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFCL ND+ LAA+ + + V VLIVDLDVHQ
Sbjct: 120 HHAFADFGSGFCLFNDLYLAAKTMQQTPSVENVLIVDLDVHQ 161
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L ++ QF+PD +IYDAGVD H +D+LG L+++ G
Sbjct: 208 YLTTLEQALTMVMRQFQPDAIIYDAGVDVHVNDDLGHLHISTQG 251
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK---SKQLIEPQQISESIAELVHT 89
+ H+ + LP HRFP+ K+ +RD+++++ + + + P + S +
Sbjct: 6 VFHSIYSQLDLPERHRFPIEKYVG-----IRDELLNRGVEASRFVTPSPVDLSFLTAYYD 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV G +K + GF WS L R RT
Sbjct: 61 PDYVDALSTGALDKKAMRRIGFPWSQQLIERTRT 94
>gi|344167758|emb|CCA80001.1| Histone deacetylase [blood disease bacterium R229]
Length = 324
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 100/258 (38%), Gaps = 63/258 (24%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R++V+ L+ E + + LVH +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERVMADVPGLVMHEAPRAGDDALLLVHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAVYLPFFLQRRP 143
V G+ Q+ GF WS + R R + T IAV L
Sbjct: 62 VSAVGAGRLDPARQREIGFPWSLAMVERSRRSAGATMAACEAAMTDGIAVNLAGGTHH-- 119
Query: 144 VFFDIAAVLADLICI---AVYLTFFLQRRPVF----FDIAAV---------LADLIHFMV 187
+ D C+ A + ++QRRP + F +A V A ++
Sbjct: 120 AYADKGGGF----CVFNDAAIASRWIQRRPGWTPDGFPVAIVDLDVHQGNGTASILRNDA 175
Query: 188 GINTQPVSG-------------------------YQATLKEHLPGILAQFKPDLVIYDAG 222
+ T V G Y L L + A+F P L+IY AG
Sbjct: 176 SVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDEAYLEALAGALDTLAARFAPRLIIYLAG 235
Query: 223 VDPHQHDELGKLNLTDHG 240
DPH+ D LG+L LT G
Sbjct: 236 ADPHEGDRLGRLKLTMEG 253
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G D
Sbjct: 157 VDLDVHQGNGTASILRNDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGD 207
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSLAMVERSRRSAGATMAACEAAMTDGIAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+A+R++ R G V IVDLDVHQ
Sbjct: 131 FNDAAIASRWIQRRPGWTPDGFPVAIVDLDVHQ 163
>gi|187929021|ref|YP_001899508.1| histone deacetylase superfamily protein [Ralstonia pickettii 12J]
gi|187725911|gb|ACD27076.1| histone deacetylase superfamily [Ralstonia pickettii 12J]
Length = 334
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 102/265 (38%), Gaps = 63/265 (23%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAE 85
++H+ +T+ + LPP HRFPM K+S +R +V+ L E + +
Sbjct: 13 VIHMRAFYTDHFVLPLPPGHRFPMRKYSD-----LRARVLADVPGLSMHEAPRADDDALL 67
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLP 136
L HT EYV G+ Q+ GF WS + R R T IAV L
Sbjct: 68 LAHTSEYVEAVSAGRLDPARQREIGFPWSPEMVERSRRSAGATMAACEAALADGIAVNLA 127
Query: 137 F------------------------FLQRRP-----------VFFDI------AAVLADL 155
++QRRP V D+ A++L D
Sbjct: 128 GGTHHAYADKGGGFCVFNDAAIASRWIQRRPGRTPANFPVAIVDLDVHQGNGTASILRDD 187
Query: 156 ICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPD 215
+ L+ ++ F A+ L +H G Y L L + +FKP
Sbjct: 188 AAV-FTLSLHGEKNYPFRKEASDLDIGLHDGCGDED-----YLQALTGALDILAGRFKPQ 241
Query: 216 LVIYDAGVDPHQHDELGKLNLTDHG 240
L+IY AG DPH+ D LG+L LT G
Sbjct: 242 LIIYLAGADPHEGDRLGRLKLTLQG 266
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I D AVFT S+H +NYPFRK+ SDLD+ + G D
Sbjct: 170 VDLDVHQGNGTASILRDDAAVFTLSLHGEKNYPFRKEASDLDIGLHDGCGD 220
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + L+D +N THHA+ D G GFC+
Sbjct: 84 DPARQREIGFPWSPEMVERSRRSAGATMAACEAALADGIAVNLAGGTHHAYADKGGGFCV 143
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+A+R++ R G V IVDLDVHQ
Sbjct: 144 FNDAAIASRWIQRRPGRTPANFPVAIVDLDVHQ 176
>gi|88801602|ref|ZP_01117130.1| Histone deacetylase superfamily protein [Polaribacter irgensii
23-P]
gi|88782260|gb|EAR13437.1| Histone deacetylase superfamily protein [Polaribacter irgensii
23-P]
Length = 300
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 81/207 (39%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF D +VFTFSMH NYPF K+ SDLD+A++ T DA
Sbjct: 151 ILIVDLDVHQGNGTAEIFQNDRSVFTFSMHGKSNYPFVKEASDLDIALENNTKDA----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T++T L + K L++ P+ +
Sbjct: 206 --TYLTLLKETLPK---------LIQQEKPDFIYY------------------------- 229
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ +DV I L L + G RD +V+ T IPV
Sbjct: 230 -----------LCGVDV------IESDKLGKLDLTIAGCKERDNFVIQTCYDLKIPVMCS 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY D++ + R A +Y
Sbjct: 273 MGGGYSPDVNTIVNAHANTFRIAQEIY 299
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + G FC++ND A+ A+YL + G+ K+LIVDLDVHQ
Sbjct: 117 GTHHAFSNRGEAFCMLNDQAIGAKYLQQKGLADKILIVDLDVHQ 160
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 190 NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
N + Y LKE LP ++ Q KPD + Y GVD + D+LGKL+LT G
Sbjct: 200 NNTKDATYLTLLKETLPKLIQQEKPDFIYYLCGVDVIESDKLGKLDLTIAG 250
>gi|33865411|ref|NP_896970.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp. WH
8102]
gi|33632580|emb|CAE07392.1| Putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. WH 8102]
Length = 323
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 99/242 (40%), Gaps = 41/242 (16%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM+KF L+ ++V+ ++ Q+ P I E +H + Y F
Sbjct: 29 YSAPLPSTHRFPMAKFRLLRRLLLDEQVL-QANQIRRPLSIPRRDLERIHRRSYHQAFSR 87
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL--------PFFLQR 141
+ + EQ+ G + L R T H IA +L P F
Sbjct: 88 DQLSRSEQRRIGLPATRPLVQRTWLSVGGTLLTARLALQHGIACHLAGGTHHAHPGFGSG 147
Query: 142 RPVFFDIAA---VLADLICIAVYLTFFLQ------RRPVFFDIAAVLADLIHFM------ 186
+F D+A VL D + L L F D + +H
Sbjct: 148 FCIFNDVATTARVLLDNGEVQRLLVVDLDVHQGDGTAACFADEPRITTLSVHAASNFPLR 207
Query: 187 -----VGINTQPVSG---YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTD 238
+ I + +G Y A + + LP +L +PDLV+++AGVDPH+ D LG+L L+D
Sbjct: 208 KVASDIDIPLEDATGDDDYLAAIGDRLPQVLDDQQPDLVLFNAGVDPHRDDRLGRLELSD 267
Query: 239 HG 240
G
Sbjct: 268 EG 269
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA P G+GFC+ ND+A AR L+ +G V+++L+VDLDVHQ
Sbjct: 136 GTHHAHPGFGSGFCIFNDVATTARVLLDNGEVQRLLVVDLDVHQ 179
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 392 HCRPGCTSG------MKSSHRALI--------MEIGLPCYDGDGTAFIFDKDPAVFTFSM 437
H PG SG + ++ R L+ + + L + GDGTA F +P + T S+
Sbjct: 139 HAHPGFGSGFCIFNDVATTARVLLDNGEVQRLLVVDLDVHQGDGTAACFADEPRITTLSV 198
Query: 438 HCGRNYPFRKQCSDLDVAIDVGTDD 462
H N+P RK SD+D+ ++ T D
Sbjct: 199 HAASNFPLRKVASDIDIPLEDATGD 223
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD VLD A+ IP+ATV GGGY ++ L +R I+ RAA + GL
Sbjct: 269 GLLRRDRLVLDAALRRSIPIATVIGGGY-DELMPLVRRHAIVIRAAVEQARLFGL 322
>gi|354565600|ref|ZP_08984774.1| histone deacetylase superfamily [Fischerella sp. JSC-11]
gi|353548473|gb|EHC17918.1| histone deacetylase superfamily [Fischerella sp. JSC-11]
Length = 170
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L R+ I L LS + THHAFP +G+GFC+
Sbjct: 2 DLKAQRRIGLPWSPALVNRTCVAVGGTILTAKLALSHGLACNTAGGTHHAFPSYGSGFCI 61
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A+R L + G+V+K+LIVDLDVHQ
Sbjct: 62 FNDLAIASRVLQKLGLVQKILIVDLDVHQ 90
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
I+ + L + GDGTAFIF D VFTFSMHC N+P KQ SDLDV + + DDA +T
Sbjct: 81 ILIVDLDVHQGDGTAFIFQDDRTVFTFSMHCEVNFPGTKQKSDLDVPLPICMEDDAYLQT 140
Query: 468 VALTWVTFLSQ 478
+A LS+
Sbjct: 141 LAAYLPDLLSE 151
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
Y TL +LP +L++ KPDL+ YDAGVDPH D
Sbjct: 137 YLQTLAAYLPDLLSEVKPDLIFYDAGVDPHVGDR 170
>gi|126173859|ref|YP_001050008.1| histone deacetylase superfamily protein [Shewanella baltica OS155]
gi|386340619|ref|YP_006036985.1| histone deacetylase superfamily protein [Shewanella baltica OS117]
gi|125997064|gb|ABN61139.1| histone deacetylase superfamily [Shewanella baltica OS155]
gi|334863020|gb|AEH13491.1| histone deacetylase superfamily [Shewanella baltica OS117]
Length = 302
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LPP+HRFP +K++ YL+ +++ + Q P ++ VH
Sbjct: 4 IPLVYHASYSKLALPPHHRFPTTKYAHLRQYLLENQLATLA-QFHTPTAMTAQDVMQVHQ 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-------VYLPFFLQRR 142
+EYV +F G + GF WS L R T + A + L
Sbjct: 63 REYVEQFIAGTLPTAALRRIGFPWSEALVERTLHSVAGTTLTASLAINQGIGLHLTGGYH 122
Query: 143 PVFFDIAA---VLADLICIAVYLTFFLQRRPVFF--------DIAAVLADLIHFMVGI-- 189
+D + + DLI A LQ V D +A L+ ++
Sbjct: 123 HAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCDVHQGDGSATLSQRHQGIISCSI 182
Query: 190 ---------------NTQPVSG-----YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
+ + G Y T+++ L ++ +PDL++YDAGVD HQ+D
Sbjct: 183 HCKENFPSRKQHSHHDIELTKGSDDNLYLETVEQTLALLIRIHQPDLILYDAGVDIHQND 242
Query: 230 ELGKLNLTDHG 240
+LG LN++ G
Sbjct: 243 DLGLLNISQEG 253
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 60/211 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDG+A + + + + S+HC N+P RKQ S D+ + G+DD
Sbjct: 152 HKVLIFDCDV--HQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDN- 208
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L + + L+R+ P++ + AG
Sbjct: 209 ---------LYLETVEQTLA------LLIRIHQPDLILYD---------AG--------- 235
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+D+HQ+ L +L+ GL+ RD VL A S IP
Sbjct: 236 ------------------VDIHQN------DDLGLLNISQEGLFRRDLTVLSMAKSENIP 271
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
+A V GGGY D QL+QR + + AA H++
Sbjct: 272 IAAVIGGGYSRDALQLSQRHSQLFIAANHLW 302
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ LAAR I V KVLI D DVHQ
Sbjct: 122 HHAHYDFGSGYCIFNDLILAARNAIASLQVHKVLIFDCDVHQ 163
>gi|389876264|ref|YP_006369829.1| histone deacetylase [Tistrella mobilis KA081020-065]
gi|388527048|gb|AFK52245.1| histone deacetylase [Tistrella mobilis KA081020-065]
Length = 300
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 58/198 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + GDGTA I + P TFSMH RN+P RK S +D+ + GT DA
Sbjct: 147 VVIIDLDVHQGDGTARILEDQPWAVTFSMHGARNFPVRKARSTIDIELPDGTGDA----- 201
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L Q + + LL P++
Sbjct: 202 -----AYLDQLEDALPG------LLDAPRPDL---------------------------- 222
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ + +D H+ R L L+ GL R++ VLD ++ GIPVATV
Sbjct: 223 --------VIYLAGVDPHRDDR------LGRLALTDRGLAAREHLVLDRCLARGIPVATV 268
Query: 589 TGGGYCADIDQLAQRQTI 606
GGGY D++ LA+R +
Sbjct: 269 LGGGYDEDVEALARRHAL 286
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L++ LPG+L +PDLVIY AGVDPH+ D LG+L LTD G
Sbjct: 201 AAYLDQLEDALPGLLDAPRPDLVIYLAGVDPHRDDRLGRLALTDRG 246
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 34 IHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYV 93
+H + Y PP HRFP+ KF+ +L R D+ + ++ P+ ++ E HT +YV
Sbjct: 1 MHHSCYTVPFPPRHRFPIGKFAALKAHLDRGPFADRFRHVV-PEPADAALLERAHTPDYV 59
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA + G +V+I+DLDVHQ
Sbjct: 113 GSHHAHAGFGAGFCVFNDVAVAACHAHATGRAGRVVIIDLDVHQ 156
>gi|311746918|ref|ZP_07720703.1| histone deacetylase family protein [Algoriphagus sp. PR1]
gi|126578609|gb|EAZ82773.1| histone deacetylase family protein [Algoriphagus sp. PR1]
Length = 300
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 80/215 (37%), Gaps = 62/215 (28%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K + + LI I L + G+GTA IF + P VFTFSMH NYP K+ SDLDV +D G
Sbjct: 146 KLAKKVLI--IDLDVHQGNGTAEIFQETPEVFTFSMHGKANYPMHKEKSDLDVELDDGMK 203
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
D L+L D +N+
Sbjct: 204 D---------------------------FEYLKLLDENLNQ------------------- 217
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSI-PVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
V K D ++Q I L LS + GL RD VLD A
Sbjct: 218 -------------VLKTFTPDFILYQSGVDILETDKLGRLSVSIQGLRTRDNMVLDLAKE 264
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
IP+ GGGY I + + ++R A ++
Sbjct: 265 MQIPIMCCMGGGYSPQIKDIIEGHAQVYRLAQDIF 299
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + G GFCL+ND+A+ A YL+ + + +KVLI+DLDVHQ
Sbjct: 117 GTHHAFTNRGEGFCLLNDLAITANYLLENKLAKKVLIIDLDVHQ 160
>gi|24373380|ref|NP_717423.1| histone deacetylase superfamily protein [Shewanella oneidensis
MR-1]
gi|24347646|gb|AAN54867.1| histone deacetylase superfamily protein [Shewanella oneidensis
MR-1]
Length = 304
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 88/211 (41%), Gaps = 60/211 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDGTA + + + S+HC N+P RKQ S D+ + GTDD+
Sbjct: 150 HKILIFDCDV--HQGDGTATLSQLHQGIISCSIHCKDNFPSRKQHSHYDIELVKGTDDSA 207
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
++ + Q E L+RL P++ + AG
Sbjct: 208 -------YLDTVEQTLE---------LLIRLHQPDLILYD---------AG--------- 233
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+D+HQ L L GLY RD VL A +A IP
Sbjct: 234 ------------------VDIHQD------DDLGHLQISQQGLYQRDVTVLSMARAANIP 269
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
VA V GGGY D QL+QR + + AA H++
Sbjct: 270 VAAVIGGGYSRDALQLSQRHSQLFIAANHLW 300
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LP +HRFP +K++ + YL+ +++ ++ +E I + VH
Sbjct: 2 IPLVYHASYSKLALPIHHRFPTTKYAHLYQYLLDNQLATPTQFHTPTPMTAEEIMQ-VHH 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFFLQ 140
++YV +F +G + GF WS L R T + IA++L
Sbjct: 61 RDYVEQFIDGTLATSALRRIGFPWSEALVERTLHSLAGTSLTAALALQTGIALHLTGGYH 120
Query: 141 RRPVFFDIA-AVLADLICIAVYLTFFLQRRPVFF--------DIAAVLADLIHFMVG--- 188
F + DLI A L Q + D A L+ L ++
Sbjct: 121 HAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDCDVHQGDGTATLSQLHQGIISCSI 180
Query: 189 -------------------INTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
+ S Y T+++ L ++ +PDL++YDAGVD HQ D
Sbjct: 181 HCKDNFPSRKQHSHYDIELVKGTDDSAYLDTVEQTLELLIRLHQPDLILYDAGVDIHQDD 240
Query: 230 ELGKLNLTDHG 240
+LG L ++ G
Sbjct: 241 DLGHLQISQQG 251
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + G+G+C+ ND+ +AAR LI + K+LI D DVHQ
Sbjct: 120 HHAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDCDVHQ 161
>gi|194289418|ref|YP_002005325.1| histone deacetylase [Cupriavidus taiwanensis LMG 19424]
gi|193223253|emb|CAQ69258.1| Histone deacetylase [Cupriavidus taiwanensis LMG 19424]
Length = 314
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 455 AIDVGTDDAG-NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAF 509
A GT DA R + W + +RS R+ G + R + E +N THHA+
Sbjct: 62 AASAGTLDAARQREIGFPWSEAMVERSR--RSAGATIEACRSALREGIAVNLAGGTHHAY 119
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
D G GFC+ ND A+AAR L R G VR+V ++DLDVHQ + + PS+ LS
Sbjct: 120 ADKGGGFCVFNDAAIAARVLQRDGAVRRVAVIDLDVHQGNGTASILHGDPSVFTLS 175
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA I DP+VFT S+H +NYPFRK+ SDLDV + G DD
Sbjct: 151 IDLDVHQGNGTASILHGDPSVFTLSLHGEKNYPFRKEASDLDVGLPDGCDD 201
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+ + + LPP HRFPM K+S ++RD V + +L E + + L HT EY
Sbjct: 5 YADHFVLPLPPGHRFPMRKYS-----MLRDAVSAQVPGLRLSEAPRAGDDALLLAHTAEY 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT 128
V G Q+ GF WS + R R T
Sbjct: 60 VEAASAGTLDAARQREIGFPWSEAMVERSRRSAGAT 95
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ L + ++F+PDL+IY AG DPH+ D LG+L LT G
Sbjct: 204 YAQALQAALDTLFSRFEPDLLIYLAGADPHEGDRLGRLKLTMAG 247
>gi|339325544|ref|YP_004685237.1| deacetylase [Cupriavidus necator N-1]
gi|338165701|gb|AEI76756.1| deacetylase histone deacetylase family [Cupriavidus necator N-1]
Length = 352
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 455 AIDVGTDDAG-NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAF 509
A GT DA R + W + +RS R+ G + R + E +N THHA+
Sbjct: 108 AASTGTLDAARQREIGFPWSEAMVERSR--RSAGATIEACRTALREGVAVNLAGGTHHAY 165
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
D G GFC+ ND A+AAR L R G VR+V +VDLDVHQ + + PS+ LS
Sbjct: 166 ADKGGGFCVFNDAAIAARVLQRDGAVRRVAVVDLDVHQGNGTASILQGDPSVFTLS 221
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I DP+VFT S+H +NYPFRK+ S+LDV + G DD
Sbjct: 197 VDLDVHQGNGTASILQGDPSVFTLSLHGEKNYPFRKEASNLDVGLPDGCDD 247
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+ + + LPP HRFPM K+S ++RD V + +L+E + + L HT Y
Sbjct: 51 YADHFVLPLPPGHRFPMRKYS-----MLRDAVAAQVPGLRLVEAPRAGDDALLLAHTPGY 105
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
V G Q+ GF WS + R R
Sbjct: 106 VQAASTGTLDAARQREIGFPWSEAMVERSR 135
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ L + ++F P+L+IY AG DPH+ D LG+L LT G
Sbjct: 250 YAQALQAALDTLFSRFDPELLIYLAGADPHEGDRLGRLRLTLAG 293
>gi|436836803|ref|YP_007322019.1| Histone deacetylase [Fibrella aestuarina BUZ 2]
gi|384068216|emb|CCH01426.1| Histone deacetylase [Fibrella aestuarina BUZ 2]
Length = 305
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+PDHG GFCL+ND+ +AA YL+ G R++L++DLDVHQ
Sbjct: 122 GTHHAYPDHGEGFCLLNDVGVAAHYLLETGQARQILVIDLDVHQ 165
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+++ I+ I L + G+GTA +F +P VFTFSMH NYP +K+ SDLDV + GT
Sbjct: 148 LETGQARQILVIDLDVHQGNGTAVMFQGEPRVFTFSMHGKDNYPLKKEQSDLDVELATGT 207
Query: 461 DD 462
D
Sbjct: 208 RD 209
>gi|90411556|ref|ZP_01219566.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium
profundum 3TCK]
gi|90327446|gb|EAS43799.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium
profundum 3TCK]
Length = 304
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 104/253 (41%), Gaps = 43/253 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELV 87
LP+++ Y + LPP HR+P+SK+ + + YL IDK S + +P ++ + +
Sbjct: 2 LPLVYHPIYSQLDLPPAHRYPISKYRRLYQYLNDSLPIDKQTSVKFHQPNTLTSDNIKRL 61
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFF 138
H +YV N + + GF WS L R T H IA++L
Sbjct: 62 HNSDYVDALINNTLPAAKMRRIGFPWSQQLIDRTLMSTAGTQLTVELAHQHGIAIHLSGG 121
Query: 139 LQRRPVFFDIAAVLADLICIAVY--LTFFLQRRPVFFD--------IAAVLA---DLIHF 185
F L + + +A + LT + + D A +LA D+I F
Sbjct: 122 YHHAHHDFGSGFCLFNDLALAAHHALTLNGVDKVMIVDCDVHHGDGTATLLAKHDDIITF 181
Query: 186 MVGINT-----QPVS-------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
V + +P S Y T K LAQ +PDLV+YDAGVD H+
Sbjct: 182 SVHCDKNFPARKPDSDIDLALPKNTSSKDYLDTFKAIYTLALAQHQPDLVLYDAGVDIHK 241
Query: 228 HDELGKLNLTDHG 240
DELG + G
Sbjct: 242 DDELGYFAVCQEG 254
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 75/208 (36%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M + + GDGTA + K + TFS+HC +N+P RK SD+D+A+ T
Sbjct: 155 VMIVDCDVHHGDGTATLLAKHDDIITFSVHCDKNFPARKPDSDIDLALPKNT-------- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
S + I+ L P++ + AG + D L
Sbjct: 207 --------SSKDYLDTFKAIYTLALAQHQPDLVLYD---------AGVDIHKDDELGYFA 249
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ + G+ ++ D++V T IPVA V
Sbjct: 250 VCQEGLYQR---------------------------------DHFVFSTCEQENIPVAAV 276
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY D L + + AA +YK
Sbjct: 277 IGGGYREDHQTLVELHAQLIHAALDIYK 304
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ALAA + + V KV+IVD DVH
Sbjct: 123 HHAHHDFGSGFCLFNDLALAAHHALTLNGVDKVMIVDCDVHH 164
>gi|319785544|ref|YP_004145020.1| histone deacetylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317171432|gb|ADV14970.1| Histone deacetylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 301
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 78/204 (38%), Gaps = 58/204 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA I DP VFTFSMH RNYP RK SDLDVA+ D G+
Sbjct: 152 ILIVDLDVHQGDGTADILADDPRVFTFSMHGDRNYPVRKIASDLDVAL---PDGTGDAAY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
L + S + + +F + AG
Sbjct: 209 LERLAAILPELSAQAHWDIVF----------------------YNAG------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+DVH R L LS GL RD V+ + G+PV V
Sbjct: 234 --------------VDVHADDR------LGRLSLSDDGLRARDDMVISHFRAQGVPVCGV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAAT 612
GGGY D+ LA R I+ A
Sbjct: 274 IGGGYSTDVPALAARHAILFEVAA 297
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I+H Y+ NHRFPMSK+ L R + + + L + S EL H
Sbjct: 3 LQIVHHPDYDAGFAVNHRFPMSKYPLLMEAL-RTRGLAGPEALSTAEPAPASWLELAHAA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGF 111
+YV + N + EK ++ GF
Sbjct: 62 DYVDQVINCRVPEKIEREIGF 82
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC ND+A+AA L+ G R +LIVDLDVHQ
Sbjct: 118 GSHHARRAQGAGFCTFNDVAVAALVLLAEGAARNILIVDLDVHQ 161
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L LP + AQ D+V Y+AGVD H D LG+L+L+D G
Sbjct: 206 AAYLERLAAILPELSAQAHWDIVFYNAGVDVHADDRLGRLSLSDDG 251
>gi|388547860|ref|ZP_10151119.1| putative histone deacetylase family protein [Pseudomonas sp. M47T1]
gi|388274018|gb|EIK93621.1| putative histone deacetylase family protein [Pseudomonas sp. M47T1]
Length = 305
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ + Y PP HRFPM KF ++LV D + + L+ P L H +
Sbjct: 3 LPLIYHDDYSPQFPPEHRFPMDKFRLLRDHLV-DSGLTRDADLLRPAVCPADTLALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+Y+ +F +G+ ++Q+ G WS LA R
Sbjct: 62 DYIERFMSGQLGREDQRRLGLPWSEALARRT 92
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLAAEQALQHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V VLI D DVHQ
Sbjct: 137 AIISRYLLASGRVGSVLIFDCDVHQ 161
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 74/204 (36%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I P T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 160 HQGDGTARILANTPDAITVSLHCEKNFPARKADSDWDIPLPMGMGDADYLQVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL L P++ + AG + D AL L G+
Sbjct: 213 ---------DDTLNYLLPLYKPDLVLYD---------AGVDVHKDDALGYLQLTDAGVS- 253
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
RD VL + I V V GGGY D
Sbjct: 254 --------------------------------ARDERVLRHCLGRDIAVMGVIGGGYSKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R ++H +A V+ + GL
Sbjct: 282 RPALARRHGLLHHSAQRVWTDLGL 305
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L +L +KPDLV+YDAGVD H+ D LG L LTD G
Sbjct: 208 YLQVVDDTLNYLLPLYKPDLVLYDAGVDVHKDDALGYLQLTDAG 251
>gi|384248971|gb|EIE22454.1| Arginase/deacetylase [Coccomyxa subellipsoidea C-169]
Length = 276
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 63/167 (37%), Gaps = 59/167 (35%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ---------------- 547
THHA DHG G+C+ ND+A AAR R V KVL VDLDVHQ
Sbjct: 79 GTHHAHADHGTGWCIFNDLACAARAAQRDAGVEKVLFVDLDVHQGDGTAAIFQRDPSVFT 138
Query: 548 -----HTRSIPVP------------------SLTVLSSCVPGLY---------------- 568
+S P P L VL +P L
Sbjct: 139 FSMHCEAQSFPSPLQTSDEDIALPAGTSDGEYLEVLQETLPRLLSRENPDLVLYNAGVDT 198
Query: 569 ----MRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
RD V + A +PVA GGGY D + +R ++HRAA
Sbjct: 199 RASRQRDRLVFASCADASVPVACAIGGGYQEDHLSIVERHVLLHRAA 245
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHC-GRNYPFRKQCSDLDVAIDVGTDDA 463
++ + L + GDGTA IF +DP+VFTFSMHC +++P Q SD D+A+ GT D
Sbjct: 113 VLFVDLDVHQGDGTAAIFQRDPSVFTFSMHCEAQSFPSPLQTSDEDIALPAGTSDG 168
>gi|428218687|ref|YP_007103152.1| histone deacetylase [Pseudanabaena sp. PCC 7367]
gi|427990469|gb|AFY70724.1| Histone deacetylase [Pseudanabaena sp. PCC 7367]
Length = 325
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI++ Y LP HRFPM KF + L+ D+V Q P+ + ELVH
Sbjct: 3 LPIVYHPNYVAPLPAGHRFPMPKFGLLRDQLIADRVA-TIDQFHAPEPPPQDWFELVHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV + NG K Q+ G WSAGLA R +T
Sbjct: 62 DYVDAYCNGTLDTKAQRRIGLPWSAGLALRTQT 94
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D R + L W L+ R++ I L + + THHAFP G+GFC+
Sbjct: 73 DTKAQRRIGLPWSAGLALRTQTAIAGSILTTKLAIEHGLACNTAGGTHHAFPSFGSGFCI 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A + + + + ++VLIVDLDVHQ
Sbjct: 133 FNDLAIATKLVQQQNLAQRVLIVDLDVHQ 161
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL +LP +L QFKPDLV+YDAGVD H D LGKL LT+ G
Sbjct: 228 YLRTLASYLPDLLDQFKPDLVLYDAGVDTHIGDRLGKLALTNTG 271
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 84/216 (38%), Gaps = 44/216 (20%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ R LI++ L + GDGTAFIF+ AI+
Sbjct: 149 AQRVLIVD--LDVHQGDGTAFIFN---------------------------AINQAQASL 179
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
N T WV + R +F F + D +R T H G + +
Sbjct: 180 TNETN--NWV-------KDARKTEVFTFSMHCQDNFPHRKQTSHLDVPLPVGMEDEDYLR 230
Query: 524 LAARYL--IRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
A YL + +++ D V H L L+ GL+ R+ VL T +
Sbjct: 231 TLASYLPDLLDQFKPDLVLYDAGVDTHIGD----RLGKLALTNTGLFRREMQVLSTCVGQ 286
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
G PVA V GGGY D+ L R T++HRAA+ VY +
Sbjct: 287 GYPVACVIGGGYAEDMRALVYRHTLLHRAASEVYHQ 322
>gi|254428920|ref|ZP_05042627.1| Histone deacetylase family, putative [Alcanivorax sp. DG881]
gi|196195089|gb|EDX90048.1| Histone deacetylase family, putative [Alcanivorax sp. DG881]
Length = 302
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ +Y P HRFPM KF++ +L R + I P + ++ H
Sbjct: 2 LPLVYHPEYSFPFPGKHRFPMEKFARLHGHL-RSRGIAHGDNEFRPGRAKATLLSQAHCP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQR 141
+YV +G + + G WS L R P+ T +A +L
Sbjct: 61 QYVSAMVDGTLDARALRRMGLPWSEALMKRSCIAPMGTLMTAQLALQQGVACHLAGGTHH 120
Query: 142 RPVFFDIAAVLADLICIAV--YLTFFLQRRPVFFD--------IAAVLADLIH-FMVGIN 190
F + + AV L + ++ + FD AA+LAD F I+
Sbjct: 121 AHYNFGSGFCIFNDQAFAVRQLLDRGVVKKALMFDCDVHQGDGTAAMLADEPRAFTCSIH 180
Query: 191 TQ---PV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
+ PV Y T+ E L +L +PDLV YDAGVD QHD
Sbjct: 181 CEKNFPVRKMKSDLDVGLPLGMTDQDYLDTVFETLDRLLDLVQPDLVFYDAGVDIFQHDP 240
Query: 231 LGKLNLTDHG 240
LG+L++++ G
Sbjct: 241 LGRLHISEQG 250
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 81/199 (40%), Gaps = 58/199 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA + +P FT S+HC +N+P RK SDLDV + +G D +L
Sbjct: 159 HQGDGTAAMLADEPRAFTCSIHCEKNFPVRKMKSDLDVGLPLGMTDQ----------DYL 208
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
E + LL L P++ F D G
Sbjct: 209 DTVFETLDR------LLDLVQPDL-------VFYDAG----------------------- 232
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+D+ QH P+ L + G+ RD VL +PVATV GGGY D
Sbjct: 233 ------VDIFQHD---PLGRLHISEQ---GIADRDRGVLARCRQRNVPVATVIGGGYDDD 280
Query: 597 IDQLAQRQTIIHRAATHVY 615
D LAQR I+ AA+ V+
Sbjct: 281 RDALAQRHAIVVEAASEVH 299
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHG 513
+D D R + L W L +RS + L L + THHA + G
Sbjct: 67 VDGTLDARALRRMGLPWSEALMKRSCIAPMGTLMTAQLALQQGVACHLAGGTHHAHYNFG 126
Query: 514 AGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+GFC+ ND A A R L+ G+V+K L+ D DVHQ
Sbjct: 127 SGFCIFNDQAFAVRQLLDRGVVKKALMFDCDVHQ 160
>gi|357027929|ref|ZP_09089984.1| Deacetylase [Mesorhizobium amorphae CCNWGS0123]
gi|355540174|gb|EHH09395.1| Deacetylase [Mesorhizobium amorphae CCNWGS0123]
Length = 300
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 82/204 (40%), Gaps = 58/204 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA I +P FTFSMH RNYP RK S LD+A+ GT D
Sbjct: 152 ILVVDLDVHQGDGTADILKDEPRAFTFSMHGDRNYPVRKIASSLDIALPDGTGDTA---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L RL+ ++ +++ AR+
Sbjct: 208 ----------------------YLERLAG--------------------ILPELSARARW 225
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
I +DVH R L L+ GL RD V+ + GIP+ V
Sbjct: 226 DI------VFYNAGVDVHAEDR------LGRLALSDNGLRARDEMVIGHFRALGIPLCGV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAAT 612
GGGY D+ +LA R I+ A+
Sbjct: 274 IGGGYSTDVARLAARHAILFEVAS 297
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC ND+A+A+ L+ G V+ +L+VDLDVHQ
Sbjct: 118 GSHHARRAQGAGFCTFNDVAVASLVLLAEGAVQNILVVDLDVHQ 161
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L LP + A+ + D+V Y+AGVD H D LG+L L+D+G
Sbjct: 206 TAYLERLAGILPELSARARWDIVFYNAGVDVHAEDRLGRLALSDNG 251
>gi|359432950|ref|ZP_09223299.1| hypothetical protein P20652_1411 [Pseudoalteromonas sp. BSi20652]
gi|357920408|dbj|GAA59548.1| hypothetical protein P20652_1411 [Pseudoalteromonas sp. BSi20652]
Length = 302
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 100/257 (38%), Gaps = 54/257 (21%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
HLP+++ Y P HRF MSKF+ + ++ +I+ + L+EP + EL+H
Sbjct: 6 HLPLVYHPNYSFNFDPKHRFAMSKFAHLYQHVAELGLINNN--LVEPILGTPEPLELIHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
+ Y+H +N + EK + G WS L +R T P T H IA +L
Sbjct: 64 ENYIHDLWNNRLDEKAMRRIGLPWSKELMARTFTAPQGTLQTARLALKHGIACHLAGGTH 123
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQAT 200
F C+ L F Q ++ VL + G T + +QA
Sbjct: 124 HAHNDFGSG------YCMVNDLAFTAQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQAY 177
Query: 201 -------LKEHLP----------GILAQFKPD--------------------LVIYDAGV 223
+++ P G+ K D LV+YDAGV
Sbjct: 178 AYTCSIHCEKNFPFRKSASDLDIGLANNMKDDEYLAIVDETLSYLLKELNPSLVLYDAGV 237
Query: 224 DPHQHDELGKLNLTDHG 240
D Q D LGKL+++ G
Sbjct: 238 DIWQGDGLGKLDISWDG 254
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 74/194 (38%), Gaps = 58/194 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA + +T S+HC +N+PFRK SDLD+ + D
Sbjct: 160 LDVHQGDGTAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLANNMKDD---------- 209
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
+L+ E + +LL+ +P + + AG + L + G
Sbjct: 210 EYLAIVDETLS------YLLKELNPSLVLYD---------AGVDIWQGDGLGKLDISWDG 254
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
IV+ RD+ VL + IPVATV GGGY
Sbjct: 255 IVK---------------------------------RDHLVLKRCLEHNIPVATVIGGGY 281
Query: 594 CADIDQLAQRQTII 607
D +LA+R I+
Sbjct: 282 DKDHLRLAKRHAIV 295
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+A A+ LI G V VLI DLDVHQ
Sbjct: 121 GTHHAHNDFGSGYCMVNDLAFTAQTLIESGEVTNVLIFDLDVHQ 164
>gi|330445427|ref|ZP_08309079.1| histone deacetylase domain protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489618|dbj|GAA03576.1| histone deacetylase domain protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 302
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 100/251 (39%), Gaps = 42/251 (16%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+++ Y +LP HR+P++K+ + + D + +P + + + +H
Sbjct: 2 LPLVYHPIYSALSLPEKHRYPINKYRLLYE-AIMDSAHANKVSVHQPNKADINKVKALHA 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQ 140
EYV N + + + GF WS L R + D H IA++L
Sbjct: 61 PEYVDALCNNQLPAAKMRRIGFPWSEALIERTLFSTGGTQLTVDLALEHGIAIHLSGGYH 120
Query: 141 RRPVFFDIAAVLADLICIAV--YLTFFLQRRPVFFD--------IAAVLAD---LIHFMV 187
F L + + A L++ + + D A +LAD +I F V
Sbjct: 121 HAHHDFGSGFCLFNDLAFAAKHALSYTHIDKVMIIDCDVHHGDGTATLLADNPNIITFSV 180
Query: 188 GINTQ------------------PVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229
+ Y LP LAQ++PDLVIYDAGVD HQHD
Sbjct: 181 HCDKNFPARKPDSTIDLALPRETSTEDYLNAFTGLLPLALAQYQPDLVIYDAGVDIHQHD 240
Query: 230 ELGKLNLTDHG 240
ELG N++ G
Sbjct: 241 ELGYFNVSTSG 251
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A AA++ + + + KV+I+D DVH
Sbjct: 120 HHAHHDFGSGFCLFNDLAFAAKHALSYTHIDKVMIIDCDVHH 161
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI--D 457
+ +H +M I + GDGTA + +P + TFS+HC +N+P RK S +D+A+ +
Sbjct: 143 ALSYTHIDKVMIIDCDVHHGDGTATLLADNPNIITFSVHCDKNFPARKPDSTIDLALPRE 202
Query: 458 VGTDDAGNRTVAL 470
T+D N L
Sbjct: 203 TSTEDYLNAFTGL 215
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+D+HQH L + GLY RD+ VL IPVA V GGGY
Sbjct: 234 VDIHQHDE------LGYFNVSTSGLYQRDHAVLSLCKERNIPVAAVIGGGY 278
>gi|213963775|ref|ZP_03392024.1| histone deacetylase family protein [Capnocytophaga sputigena Capno]
gi|213953551|gb|EEB64884.1| histone deacetylase family protein [Capnocytophaga sputigena Capno]
Length = 300
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 490 LFLLRLSDPEIN-RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
L+ LR + N THHAF + G GFC++ND A+AA YL+ H V+KVLIVDLDVHQ
Sbjct: 102 LWALRTGEVAFNIAGGTHHAFSNRGEGFCMLNDQAIAAAYLLHHTAVKKVLIVDLDVHQ 160
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA IF P VFTFSMH NYPF K+ SD D+A+ GTDD
Sbjct: 151 VLIVDLDVHQGNGTAEIFRNTPEVFTFSMHAQANYPFEKEQSDKDIALPNGTDD 204
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 93/246 (37%), Gaps = 48/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P NHRFPM K++ L+ + + S P++ +++ A LVHT+ Y+H F +
Sbjct: 9 YNHPVPENHRFPMEKYALLPQQLLYEGIASASN-FHTPEKATQATAALVHTQPYLHNFLH 67
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA-------- 150
+ KE GF L R T T A++ L+ V F+IA
Sbjct: 68 LTLSHKEALPIGFVQCQQLVDRELTLVQGTVEGALWA---LRTGEVAFNIAGGTHHAFSN 124
Query: 151 ------VLADLICIAVYLTFFLQRRPV----------------FFDIAAVLADLIHFMVG 188
+L D A YL + V F + V +H
Sbjct: 125 RGEGFCMLNDQAIAAAYLLHHTAVKKVLIVDLDVHQGNGTAEIFRNTPEVFTFSMHAQAN 184
Query: 189 I--------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
N Y L+ LP ++ +PD V Y AGVD D+LGKL
Sbjct: 185 YPFEKEQSDKDIALPNGTDDKTYLDILRSTLPQLIEAHQPDFVFYQAGVDVLATDKLGKL 244
Query: 235 NLTDHG 240
+LT G
Sbjct: 245 SLTVEG 250
>gi|427702729|ref|YP_007045951.1| deacetylase [Cyanobium gracile PCC 6307]
gi|427345897|gb|AFY28610.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cyanobium gracile PCC 6307]
Length = 321
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP HG+GFC+ ND A+AAR L+ G+VR+VL+VDLDVHQ
Sbjct: 118 GTHHAFPLHGSGFCIFNDCAVAARVLLAEGLVRQVLVVDLDVHQ 161
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRT 467
++ + L + GDGTA IF DP VF+FSMH N+P KQ DLD+A++ G DDA RT
Sbjct: 152 VLVVDLDVHQGDGTAAIFTGDPRVFSFSMHAASNFPLHKQTGDLDLALEDGVGDDAYLRT 211
Query: 468 VALTWVTFLSQ 478
+ T L Q
Sbjct: 212 LERTLPDLLDQ 222
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL+ LP +L Q +PDLV+Y+AGVDPH+ D LG+L L+D G
Sbjct: 208 YLRTLERTLPDLLDQVRPDLVLYNAGVDPHRDDRLGRLELSDDG 251
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P+++ Y LP HRFPM KF + + + + Q+ +P ELVH +
Sbjct: 4 PLVYHPAYAVPLPSGHRFPMQKF-RLLKERLEQLELARPGQIHQPLPAPRRWLELVHGRG 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y F G T +E + G S L R
Sbjct: 63 YHEAFSRGLLTPQEVRRIGLPVSEPLVRR 91
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
GL+ RD V+D A+ +PVATV GGGY D+ L +R T++ RAA
Sbjct: 251 GLHRRDRLVIDAALRRRLPVATVIGGGY-DDLAALVERHTLVVRAA 295
>gi|429751872|ref|ZP_19284765.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
326 str. F0382]
gi|429178776|gb|EKY20044.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
326 str. F0382]
Length = 307
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 490 LFLLRLSDPEIN-RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
L+ LR + N THHAF + G GFC++ND A+AA YL+ H V+KVLIVDLDVHQ
Sbjct: 109 LWALRTGEIAFNIAGGTHHAFSNRGEGFCMLNDQAIAAAYLLHHTAVKKVLIVDLDVHQ 167
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA IF P VFTFSMH NYPF K+ SD D+A+ GTDD
Sbjct: 158 VLIVDLDVHQGNGTAEIFRNTPEVFTFSMHAQANYPFEKEQSDKDIALPNGTDD 211
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 93/246 (37%), Gaps = 48/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P NHRFPM K++ L+ + I + P++ +++ A LVHT+ Y+H F +
Sbjct: 16 YNHPVPENHRFPMEKYALLPQQLLYEG-IASATNFHTPEKATQATAALVHTQPYLHNFLH 74
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA-------- 150
+ KE GF L R T T A++ L+ + F+IA
Sbjct: 75 LTLSHKEALPIGFVQCQQLVDRELTLVQGTVEGALWA---LRTGEIAFNIAGGTHHAFSN 131
Query: 151 ------VLADLICIAVYLTFFLQRRPV----------------FFDIAAVLADLIHFMVG 188
+L D A YL + V F + V +H
Sbjct: 132 RGEGFCMLNDQAIAAAYLLHHTAVKKVLIVDLDVHQGNGTAEIFRNTPEVFTFSMHAQAN 191
Query: 189 I--------------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
N Y L+ LP ++ +PD V Y AGVD D+LGKL
Sbjct: 192 YPFEKEQSDKDIALPNGTDDKTYLDILRSVLPQLIEAHQPDFVFYQAGVDVLATDKLGKL 251
Query: 235 NLTDHG 240
+LT G
Sbjct: 252 SLTVEG 257
>gi|333370018|ref|ZP_08462100.1| histone deacetylase [Psychrobacter sp. 1501(2011)]
gi|332968662|gb|EGK07715.1| histone deacetylase [Psychrobacter sp. 1501(2011)]
Length = 301
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 81/207 (39%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +P VF FSMH +NYPFRK SDLD+ + TDD
Sbjct: 151 ILIVDLDVHQGNGNASIMANEPRVFVFSMHGEKNYPFRKPPSDLDIDLPNETDDE----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T++ L Q + R H PD
Sbjct: 206 --TYLNILKQT--------------------LPRLIAEHN-PD----------------- 225
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
LI + VL D L LS + G RD +VL A + IP+A V
Sbjct: 226 LIFYQSAVDVLATD-------------KLGKLSLTLEGCKQRDEFVLSQAKAHNIPIAIV 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY +++Q+ + R A ++
Sbjct: 273 MGGGYSEEVEQVVEAHCNTFRLAKQLF 299
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH+F DHG GFC+ ND+ +A+ L+ G V ++LIVDLDVHQ
Sbjct: 117 GTHHSFADHGEGFCVFNDVCIASNLLLSRGEVNRILIVDLDVHQ 160
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 56/258 (21%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
+P HRFPM K+ LV++ + + P ++SE HT EY K +
Sbjct: 14 VPEKHRFPMQKYRLIPERLVQEGTLSEDN-FFAPSKVSEQEILTTHTAEYWDKLKTQALS 72
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA------------ 150
KE + GFE + L R R T+ A+Y ++ V ++A
Sbjct: 73 RKEARAIGFEMTPELVERGRYIAHATYECALY----AKQYGVSLNVAGGTHHSFADHGEG 128
Query: 151 --VLADLICIAVYLTFFLQR----RPVFFDI--------AAVLAD----LIHFMVGINTQ 192
V D +CIA L L R R + D+ A+++A+ + M G
Sbjct: 129 FCVFND-VCIASNL--LLSRGEVNRILIVDLDVHQGNGNASIMANEPRVFVFSMHGEKNY 185
Query: 193 PV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLN 235
P Y LK+ LP ++A+ PDL+ Y + VD D+LGKL+
Sbjct: 186 PFRKPPSDLDIDLPNETDDETYLNILKQTLPRLIAEHNPDLIFYQSAVDVLATDKLGKLS 245
Query: 236 LTDHGECISSSARISSEA 253
LT G C + S+A
Sbjct: 246 LTLEG-CKQRDEFVLSQA 262
>gi|313674860|ref|YP_004052856.1| histone deacetylase [Marivirga tractuosa DSM 4126]
gi|312941558|gb|ADR20748.1| Histone deacetylase [Marivirga tractuosa DSM 4126]
Length = 300
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+AA+YL+++ V K+L+VDLDVHQ
Sbjct: 117 GTHHAFTDRGEGFCLLNDIAIAAQYLLKNAKVSKILVVDLDVHQ 160
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+K++ + I+ + L + G+GTA IF +P VFTFSMH NYP K+ SDLD+ ++ T
Sbjct: 143 LKNAKVSKILVVDLDVHQGNGTAEIFRDNPDVFTFSMHGKGNYPMHKERSDLDIEMEDKT 202
Query: 461 DDAGNRTVALTWVTFLSQRSEKM 483
DD T++T L + K+
Sbjct: 203 DDK-------TYLTVLRENLPKL 218
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + +Y LP NHRFPM K+ L+ + + +S P +SE VHT
Sbjct: 2 LKIAYRKEYAHPLPENHRFPMIKYELLPEQLIYEGTVTES-SFFSPNLLSEEDILAVHTN 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
EY K N + KE++ TGF SA L R R
Sbjct: 61 EYWQKLKNLTLSRKEERRTGFPLSAALIERER 92
>gi|338530056|ref|YP_004663390.1| histone deacetylase family protein [Myxococcus fulvus HW-1]
gi|337256152|gb|AEI62312.1| histone deacetylase family protein [Myxococcus fulvus HW-1]
Length = 299
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 100/260 (38%), Gaps = 65/260 (25%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAE------L 86
+ H++ YE LPP HRFPM K+ L+R+ ++ ++ ++ P+ ++ES
Sbjct: 3 VFHSDSYEVPLPPGHRFPMEKYR-----LLREALL--ARGVLPPESLTESTPSPREDLAR 55
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY------------ 134
VHT Y+ F G TE EQ+ GF WS L R T A
Sbjct: 56 VHTPRYLDALFQGTLTEAEQRRLGFPWSPELVRRFAAAVAGTVDAARAALQDGIGGNLSG 115
Query: 135 -----LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLAD 181
P + VF DIA + I RR V D+ AAV A
Sbjct: 116 GTHHGFPDHGEGFCVFNDIA------VAIRALQASRDIRRAVVVDLDVHQGNGTAAVFAG 169
Query: 182 ----LIHFMVGINTQPVSGYQATLKEHLP---------GILAQFKPD--------LVIYD 220
M G N P + L LP LA + P+ ++ Y
Sbjct: 170 DDSVFTFSMHGENNFPFRKQPSQLDVGLPDGTGDAAYLDALALYLPEVLDRAGACILFYQ 229
Query: 221 AGVDPHQHDELGKLNLTDHG 240
AGVDP D LG+L+LT G
Sbjct: 230 AGVDPLTEDALGRLSLTHAG 249
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
THH FPDHG GFC+ ND+A+A R L +R+ ++VDLDVHQ + V
Sbjct: 116 GTHHGFPDHGEGFCVFNDIAVAIRALQASRDIRRAVVVDLDVHQGNGTAAV 166
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RA++++ L + G+GTA +F D +VFTFSMH N+PFRKQ S LDV + GT DA
Sbjct: 149 RAVVVD--LDVHQGNGTAAVFAGDDSVFTFSMHGENNFPFRKQPSQLDVGLPDGTGDA 204
>gi|372222676|ref|ZP_09501097.1| histone deacetylase [Mesoflavibacter zeaxanthinifaciens S86]
Length = 300
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 82/207 (39%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF+ +P VFTFS+H NYPF+K+ SDLD+A++ GT D
Sbjct: 151 ILIVDLDVHQGNGTAEIFEHNPHVFTFSIHGKANYPFKKEISDLDIALEKGTTDD----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L +E + N LL + P+ F L LA
Sbjct: 206 -----VYLKILNETLSN------LLEQTQPDFV--------------FYLAGVDVLATDK 240
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L G+ ++ G RD VL + G+PV
Sbjct: 241 LGTLGLTKE----------------------------GCKKRDAMVLQACKNNGLPVMCS 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY +I + +R A +Y
Sbjct: 273 MGGGYSPEIKHIVDAHANTYRLAQEIY 299
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G FCL+ND A+ A+YL+ + K+LIVDLDVHQ
Sbjct: 117 GTHHAYSNRGEAFCLLNDQAIGAQYLLDQNLASKILIVDLDVHQ 160
>gi|127513415|ref|YP_001094612.1| histone deacetylase superfamily protein [Shewanella loihica PV-4]
gi|126638710|gb|ABO24353.1| histone deacetylase superfamily [Shewanella loihica PV-4]
Length = 300
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 58/199 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA + ++T S+HC N+P RKQ SDLD+ + G D +L
Sbjct: 160 HQGDGTAAMGQAYDNLYTCSIHCQENFPARKQTSDLDLELSRGVGDE----------EYL 209
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
++ + +RL P++ +
Sbjct: 210 EAVAQTLA------LAIRLYQPDLIIYDA------------------------------- 232
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+DVHQ R L L+ G+Y RD VLD A +A IP+A V GGGY +
Sbjct: 233 -----GVDVHQADR------LGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKE 281
Query: 597 IDQLAQRQTIIHRAATHVY 615
I+ LA+R + AA ++
Sbjct: 282 IEVLAERHAQVFIAAHAIW 300
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + + LP +HRFP++K+ + YL+ +++D + P+ +S + +H +Y
Sbjct: 5 VYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTA-FHSPEAVSLEWLKSIHCPDY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV 130
V +F + +K + GF S L R TH+
Sbjct: 64 VMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHL 101
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 212 FKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
++PDL+IYDAGVD HQ D LG LN+T G
Sbjct: 223 YQPDLIIYDAGVDVHQADRLGHLNITTEG 251
>gi|408674651|ref|YP_006874399.1| histone deacetylase superfamily [Emticicia oligotrophica DSM 17448]
gi|387856275|gb|AFK04372.1| histone deacetylase superfamily [Emticicia oligotrophica DSM 17448]
Length = 300
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D G GFCL+ND+A+AA YL+ + IV+KVL++DLDVHQ
Sbjct: 117 GTHHAYSDKGEGFCLLNDVAVAANYLLENQIVKKVLVIDLDVHQ 160
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
++ I L + G+GTA IF ++P VFTFSMH NYP +K+ SDLD+ +
Sbjct: 151 VLVIDLDVHQGNGTAEIFQQEPRVFTFSMHGKENYPLKKEISDLDIEL 198
>gi|379729191|ref|YP_005321387.1| histone deacetylase [Saprospira grandis str. Lewin]
gi|378574802|gb|AFC23803.1| histone deacetylase [Saprospira grandis str. Lewin]
Length = 300
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
THHA+ HG GFCL+ND A+AA YL+ G+ +++LIVDLDVHQ S +
Sbjct: 117 GTHHAYASHGEGFCLLNDFAIAANYLLDQGLAQQILIVDLDVHQGNGSAKI 167
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 84/207 (40%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G+A IF+ +P VFTFSMH NYPFRK+ SDLD+A+ DD V
Sbjct: 151 ILIVDLDVHQGNGSAKIFENEPRVFTFSMHAAANYPFRKERSDLDIALPDLMDDGPYLQV 210
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L E +R + +L LS ++ LA+
Sbjct: 211 ---LADYLPALLESLRPD----IVLYLSGVDV-----------------------LASDK 240
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L R G+ L++C RD +V AG+PVA
Sbjct: 241 LGRLGL------------------------SLNACA----QRDQFVFSCCQKAGVPVAVS 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY + + + +R A +Y
Sbjct: 273 MGGGYSPQLRYIIEAHANTYRMAQKIY 299
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM K+ L+ + +++ + PQ I+E H+K+Y
Sbjct: 10 YRYELPQGHRFPMIKYDLLAQQLIYEGCLEE-ENFFHPQPIAEEWILRTHSKDYWDSLKK 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRT 123
+ K + GF S L R +
Sbjct: 69 QTISAKAARKIGFPMSEKLVQRSKV 93
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
Y L ++LP +L +PD+V+Y +GVD D+LG+L L+
Sbjct: 207 YLQVLADYLPALLESLRPDIVLYLSGVDVLASDKLGRLGLS 247
>gi|94310146|ref|YP_583356.1| histone deacetylase superfamily [Cupriavidus metallidurans CH34]
gi|93353998|gb|ABF08087.1| histone deacetylase superfamily [Cupriavidus metallidurans CH34]
Length = 323
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D A R + W + +RS + I + L + THHA+ D GAGFC+
Sbjct: 85 DAARQREIGFPWSHEMVERSRRSAGATIAACRVALEQGIAANLAGGTHHAYADKGAGFCV 144
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+AAR L R G VR+V ++DLDVHQ
Sbjct: 145 FNDAAIAARRLQRDGSVRRVAVIDLDVHQ 173
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
I L + G+GTA I DP +FT S+H +NYPFRK+ SDLDV + G DD G VAL
Sbjct: 167 IDLDVHQGNGTASILRDDPTIFTLSLHGEKNYPFRKEASDLDVGLPDGCDD-GTYAVALA 225
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L L + A+F PDL+IY AG DPH+ D LG+L LT G
Sbjct: 220 YAVALASALETLFARFDPDLLIYLAGADPHEGDRLGRLKLTMAG 263
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+ + + LPP HRFPM K+S ++RD V+ + +L E + ++ L HT Y
Sbjct: 21 YADHFVLPLPPGHRFPMRKYS-----MLRDAVVREVGGVELQEAPRADDATLALAHTAAY 75
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+ G+ Q+ GF WS + R R
Sbjct: 76 IEDVSTGQLDAARQREIGFPWSHEMVERSR 105
>gi|299066616|emb|CBJ37806.1| Histone deacetylase [Ralstonia solanacearum CMR15]
Length = 327
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 98/254 (38%), Gaps = 55/254 (21%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R++V+ + L+ E + + L H +Y
Sbjct: 11 YTDHFVLPLPPGHRFPMRKYS-----LLRERVMAEVPGLVMHEAPRAEDDALLLAHAPDY 65
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFFLQRRP 143
+ G+ Q+ GF WS + R R T IAV L
Sbjct: 66 ISAVGAGRLEPARQREIGFPWSPEMVERSRRSAGATMAACEAAMADGIAVNLAGGTHH-- 123
Query: 144 VFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADLIH--------------FM 186
+ D V D + ++ L R P F +A V D+ F
Sbjct: 124 AYADKGGGFCVFNDAAIASRWMQRRLGRTPEHFPVAIVDLDVHQGNGTASILRDDSSVFT 183
Query: 187 VGINTQ----------------PVSGYQATLKEHLPGIL----AQFKPDLVIYDAGVDPH 226
+ ++ + P A E L G L A+F P L+IY AG DPH
Sbjct: 184 LSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDTLAARFAPRLIIYLAGADPH 243
Query: 227 QHDELGKLNLTDHG 240
+ D LG+L LT G
Sbjct: 244 EGDRLGRLRLTLDG 257
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 161 VDLDVHQGNGTASILRDDSSVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDA 212
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCLMN 520
A R + W + +RS + + ++D +N THHA+ D G GFC+ N
Sbjct: 77 ARQREIGFPWSPEMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFN 136
Query: 521 DMALAARYLIRHGIVRK-----VLIVDLDVHQ 547
D A+A+R++ R + R V IVDLDVHQ
Sbjct: 137 DAAIASRWMQRR-LGRTPEHFPVAIVDLDVHQ 167
>gi|375111108|ref|ZP_09757319.1| histone deacetylase superfamily protein [Alishewanella jeotgali
KCTC 22429]
gi|374568650|gb|EHR39822.1| histone deacetylase superfamily protein [Alishewanella jeotgali
KCTC 22429]
Length = 312
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 63/258 (24%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H E TLP NHR+P+ K+ + L+ V + L PQ I EL+H Y
Sbjct: 9 VYHPCYSELTLPANHRYPIGKYRTLYQRLLALGVPQSAFYL--PQAIKAQALELLHEPAY 66
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL------PF 137
V+ +G + + GF WS L +R T T H +A++L F
Sbjct: 67 VNALCHGTLDARAMRRIGFPWSPQLIARSLTSLGGTLLCAELALEHGLALHLSGGYHHAF 126
Query: 138 FLQRRP--VFFDIAAVLADLICIAVYLTFFLQRRPV-------------------FFDIA 176
+ + +F D+A + LQ+R + F D +
Sbjct: 127 YAEGSGFCLFNDLA-----------FAALSLQQRGIGPIQIFDCDVHQGDGSAALFADNS 175
Query: 177 AVLADLIH-------------FMVGINTQPV-SGYQATLKEHLPGILAQFKPDLVIYDAG 222
++ +H + +G+ Y + + L +L ++P+LV+YDAG
Sbjct: 176 GIITASLHCEKNFPARKQRSDWDIGLERDCTDQTYLEAVSQSLDTLLRWYQPELVLYDAG 235
Query: 223 VDPHQHDELGKLNLTDHG 240
VD H+ D+LG LN++ G
Sbjct: 236 VDIHRQDDLGLLNISTAG 253
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 58/198 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDG+A +F + + T S+HC +N+P RKQ SD D+ ++ D T+L
Sbjct: 162 HQGDGSAALFADNSGIITASLHCEKNFPARKQRSDWDIGLERDCTDQ----------TYL 211
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
S+ + LLR PE+ + D G
Sbjct: 212 EAVSQSLDT------LLRWYQPELVLY-------DAG----------------------- 235
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+D+H+ L +L+ G+ RD VL AGIPVA V GGGY D
Sbjct: 236 ------VDIHRQD------DLGLLNISTAGVLARDTLVLQRCHDAGIPVAAVIGGGYQRD 283
Query: 597 IDQLAQRQTIIHRAATHV 614
+ L Q + +AA V
Sbjct: 284 LQALTQVHLQLFKAAFAV 301
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 459 GTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAG 515
GT DA R + W L RS + L L S HHAF G+G
Sbjct: 73 GTLDARAMRRIGFPWSPQLIARSLTSLGGTLLCAELALEHGLALHLSGGYHHAFYAEGSG 132
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FCL ND+A AA L + GI + I D DVHQ
Sbjct: 133 FCLFNDLAFAALSLQQRGI-GPIQIFDCDVHQ 163
>gi|284037371|ref|YP_003387301.1| histone deacetylase [Spirosoma linguale DSM 74]
gi|283816664|gb|ADB38502.1| Histone deacetylase [Spirosoma linguale DSM 74]
Length = 300
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPD G GFC++ND+ +AA YL+ G +K+L+VDLDVHQ
Sbjct: 117 GTHHAFPDRGEGFCMLNDVGIAANYLLEIGQAKKILVVDLDVHQ 160
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA +F + VFTFSMH NYP RK+ SDLD+ + GT D
Sbjct: 151 ILVVDLDVHQGNGTAVMFQTESRVFTFSMHGADNYPLRKETSDLDIDLPTGTTD 204
>gi|220908103|ref|YP_002483414.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 7425]
gi|219864714|gb|ACL45053.1| histone deacetylase superfamily [Cyanothece sp. PCC 7425]
Length = 305
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDMA 523
R + L W L R+ I L S THHAFPD+G+GFC+ ND+A
Sbjct: 78 RRIGLPWSEALVHRTWTAVGGTILTAQLAFSHGLACNTAGGTHHAFPDYGSGFCIFNDLA 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+AAR + G+ K+LI+DLDVHQ
Sbjct: 138 IAARTVQHLGLAHKILIIDLDVHQ 161
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+H+ LI++ L + GDGTAFIF D +VFTFSMHC N+P KQ SDLDV + VG +D
Sbjct: 149 AHKILIID--LDVHQGDGTAFIFRHDSSVFTFSMHCQANFPATKQQSDLDVPLPVGMED 205
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GLY R+ YVL T I AG PVA V GGGY D+ L R +++HRAAT VY +
Sbjct: 251 GLYQRELYVLSTCIGAGYPVACVIGGGYAEDLKALVYRHSLLHRAATQVYYQ 302
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LPP HRFPM KF + ++ L+ + + + Q P +++ E VH
Sbjct: 3 LPLVYHPNYGVPLPPGHRFPMLKFCRLYDLLLAEGIASPA-QFHLPALPAQNWLEQVHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
Y+ + +G +EK + G WS L R T
Sbjct: 62 TYIQSYSDGTLSEKVLRRIGLPWSEALVHRTWT 94
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 187 VGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
VG+ QP Y TL HL +L+Q KPDLV+YDAGVDPH D LGKL LTD G
Sbjct: 201 VGMEDQP---YLHTLSLHLSDLLSQVKPDLVLYDAGVDPHWGDRLGKLALTDTG 251
>gi|255531938|ref|YP_003092310.1| histone deacetylase [Pedobacter heparinus DSM 2366]
gi|255344922|gb|ACU04248.1| Histone deacetylase [Pedobacter heparinus DSM 2366]
Length = 299
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+GTA IF+ +P VFTFSMH +N+PFRK+ SDLD+A+ GT DA
Sbjct: 151 ILIIDLDVHQGNGTAEIFENEPRVFTFSMHGDKNFPFRKEKSDLDIALGDGTGDA 205
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA + G GFCL+ND A+AA YL+ +G+ + +LI+DLDVHQ
Sbjct: 117 GTHHAGSNWGEGFCLLNDQAIAANYLLNNGLAKHILIIDLDVHQ 160
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM K+ L+ + +I + L EP + E + H K Y + +
Sbjct: 10 YAHPLPEGHRFPMIKYELIPGQLLHEGLI-SAANLFEPGLLEEEVVLYAHQKAYWEQLKS 68
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
+EQ+ GF +A L R
Sbjct: 69 LSLPAREQRRIGFPLTAQLLER 90
>gi|376004310|ref|ZP_09782035.1| histone deacetylase/AcuC/AphA family protein (fragment)
[Arthrospira sp. PCC 8005]
gi|375327329|emb|CCE17788.1| histone deacetylase/AcuC/AphA family protein (fragment)
[Arthrospira sp. PCC 8005]
Length = 210
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 71/185 (38%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ---------------- 547
THHAFP++G+GFC+ ND+A+AA + + G+ +K+LIVDLDVHQ
Sbjct: 23 GTHHAFPNYGSGFCIFNDIAIAACVMQKLGLAKKILIVDLDVHQGDATAVIFQDNPHVFT 82
Query: 548 ---------------HTRSIPVP-------SLTVLSSCVPGL---YMRDYYVLDTAISAG 582
R IP+ L +L+S +P L + D + D +
Sbjct: 83 FSMHCQANFPAKKQTSDRDIPLAVGMEDEEYLQILASHLPDLLTEFRPDLVIYDAGVDTH 142
Query: 583 IP--------------------VATVTGGG----------YCADIDQLAQRQTIIHRAAT 612
I ++T G G YC D+ L R +++HRAAT
Sbjct: 143 IGDRLGKLALTDSGLWRREMQVLSTCVGMGYPVAGIIGGGYCEDMQSLVYRHSLLHRAAT 202
Query: 613 HVYKE 617
VY++
Sbjct: 203 DVYRQ 207
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L HLP +L +F+PDLVIYDAGVD H D LGKL LTD G
Sbjct: 113 YLQILASHLPDLLTEFRPDLVIYDAGVDTHIGDRLGKLALTDSG 156
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + GD TA IF +P VFTFSMHC N+P +KQ SD D+ + VG +D
Sbjct: 57 ILIVDLDVHQGDATAVIFQDNPHVFTFSMHCQANFPAKKQTSDRDIPLAVGMED 110
>gi|345867518|ref|ZP_08819529.1| histone deacetylase domain protein [Bizionia argentinensis JUB59]
gi|344048186|gb|EGV43799.1| histone deacetylase domain protein [Bizionia argentinensis JUB59]
Length = 300
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G GFCL+ND A+AARYL +H + K+LIVDLDVHQ
Sbjct: 117 GTHHAYSNRGEGFCLLNDQAIAARYLQKHQLAEKILIVDLDVHQ 160
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF DP+VFTFSMH NYPF+K+ SDLD+A++ ++D
Sbjct: 151 ILIVDLDVHQGNGTAEIFQNDPSVFTFSMHGKSNYPFKKEESDLDIALETDSND 204
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + LKE LP ++A KPD + Y GVD D+LGKL LT G
Sbjct: 207 YLSILKETLPKLIASEKPDFIYYLCGVDVMATDKLGKLALTLEG 250
>gi|148653959|ref|YP_001281052.1| histone deacetylase superfamily protein [Psychrobacter sp. PRwf-1]
gi|148573043|gb|ABQ95102.1| histone deacetylase superfamily [Psychrobacter sp. PRwf-1]
Length = 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A I +P VF FSMH +NYPFRK SDLD+ + TDDA
Sbjct: 151 ILIVDLDVHQGNGNASIMANEPRVFVFSMHGEKNYPFRKPPSDLDIDLPNDTDDA----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T++T L K+ + H PD
Sbjct: 206 --TYLTLLKDTLPKL-------------------IAEHE--PD----------------- 225
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
LI + VL D L L+ + G RD +VL A + IP+A V
Sbjct: 226 LIFYQSAVDVLASD-------------KLGKLALSLEGCKARDEFVLTQAKAHHIPIAIV 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY +++Q+ + R A ++
Sbjct: 273 MGGGYSEEVEQVVEAHCNTFRLAKQIF 299
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF DHG GFC+ ND+ +A+ L+ G K+LIVDLDVHQ
Sbjct: 117 GTHHAFADHGEGFCVFNDVCIASNLLLSRGQASKILIVDLDVHQ 160
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 98/250 (39%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + Y +P HRFPM K+ L+ + + + P ++SE+ HT
Sbjct: 2 LKIAFSPIYLYDVPEKHRFPMQKYRLIPERLLAEGTLTQD-NFFAPDKVSEAEILTTHTP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA 150
EY K KE + GFE + L R R T+ A+Y + V
Sbjct: 61 EYWDKLKTQTLPRKEARAIGFEMTPQLVERGRYIAHATYECALYAKQYGVSLNVAGGTHH 120
Query: 151 VLADL---------ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LIHFMV 187
AD +CIA + L+ + + D+ A+++A+ + M
Sbjct: 121 AFADHGEGFCVFNDVCIASNLLLSRGQASKILIVDLDVHQGNGNASIMANEPRVFVFSMH 180
Query: 188 GINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
G P + Y LK+ LP ++A+ +PDL+ Y + VD D+
Sbjct: 181 GEKNYPFRKPPSDLDIDLPNDTDDATYLTLLKDTLPKLIAEHEPDLIFYQSAVDVLASDK 240
Query: 231 LGKLNLTDHG 240
LGKL L+ G
Sbjct: 241 LGKLALSLEG 250
>gi|387790625|ref|YP_006255690.1| deacetylase [Solitalea canadensis DSM 3403]
gi|379653458|gb|AFD06514.1| deacetylase, histone deacetylase/acetoin utilization protein
[Solitalea canadensis DSM 3403]
Length = 299
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+AA YL++ I K+L+VDLDVHQ
Sbjct: 116 GTHHAFTDKGEGFCLLNDIAIAANYLLKKKIASKILVVDLDVHQ 159
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+K + I+ + L + G+GTA IF + AVFTFSMH N+P++K+ SDLD+ + T
Sbjct: 142 LKKKIASKILVVDLDVHQGNGTAEIFQDNKAVFTFSMHGKTNWPYKKERSDLDIELPDNT 201
Query: 461 DD 462
DD
Sbjct: 202 DD 203
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 89/245 (36%), Gaps = 47/245 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM K+ L+ + I + L P + E I L H EY +K
Sbjct: 9 YAHPLPEGHRFPMIKYELIPEQLLHEGTI-THENLFSPAFVPEEIILLTHKHEYWNKLKT 67
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY-------LPFFLQRRPVFFDIAAV 151
+ +E++ TGF S L R T T Y L F D
Sbjct: 68 LTLSPQEERRTGFPLSQQLIDREITIAQGTIDCCYYALNDGVALNVAGGTHHAFTDKGEG 127
Query: 152 LADLICIAVYLTFFLQRR-------------------PVFFDIAAVLADLIHFMVGINTQ 192
L IA+ + L+++ +F D AV +H G
Sbjct: 128 FCLLNDIAIAANYLLKKKIASKILVVDLDVHQGNGTAEIFQDNKAVFTFSMH---GKTNW 184
Query: 193 PVSG-----------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLN 235
P Y LKE L ++ + KPD + Y +GVD + D+LGKL+
Sbjct: 185 PYKKERSDLDIELPDNTDDQLYLGLLKETLTHLIKKEKPDFIFYQSGVDILESDKLGKLS 244
Query: 236 LTDHG 240
++ G
Sbjct: 245 VSKTG 249
>gi|149371070|ref|ZP_01890665.1| histone deacetylase superfamily protein [unidentified eubacterium
SCB49]
gi|149355856|gb|EDM44414.1| histone deacetylase superfamily protein [unidentified eubacterium
SCB49]
Length = 300
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL+ND A+AAR+L+ GI ++VLIVDLDVHQ
Sbjct: 117 GTHHAYADHGEAFCLLNDQAVAARHLLDLGIAKQVLIVDLDVHQ 160
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
++ + L + G+GTA IF+ D VFTFSMH +NYPF+K SDLD+ +D GT+DA
Sbjct: 151 VLIVDLDVHQGNGTAKIFENDDRVFTFSMHGAKNYPFKKDRSDLDIGLDDGTEDA 205
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
++ +LP HRFPM+K+ YL+ D+ I EPQ++SE+ VHT++Y +
Sbjct: 10 FKYSLPEGHRFPMAKYELLPQYLL-DQGICTLDNFFEPQKVSEASILKVHTEDYYRRLLK 68
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
+ +KE + GF L R
Sbjct: 69 LEIDKKEVRKMGFPLRKALVDR 90
>gi|418023646|ref|ZP_12662631.1| histone deacetylase superfamily [Shewanella baltica OS625]
gi|353537529|gb|EHC07086.1| histone deacetylase superfamily [Shewanella baltica OS625]
Length = 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 60/211 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDG+A + + + + S+HC N+P RKQ S D+ + G+DD
Sbjct: 152 HKVLIFDCDV--HQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDN- 208
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L + + L+R+ P++ + AG
Sbjct: 209 ---------LYLETVEQTLA------LLIRIHQPDLILYD---------AG--------- 235
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+D+HQ+ L +L+ GL+ RD VL A S IP
Sbjct: 236 ------------------VDIHQN------DDLGLLNISQEGLFRRDLTVLSMAKSENIP 271
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
+A V GGGY D QL+QR + + AA H++
Sbjct: 272 IAAVIGGGYSRDALQLSQRHSQLFIAANHLW 302
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+I+ Y + LPP+HRFP +K++ YL+ + ++ Q P ++ VH
Sbjct: 4 IPLIYHASYSKLALPPHHRFPTTKYANLRQYLL-ENLLATPAQFHTPTAMTVQDVMQVHQ 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+EYV +F G + GF WS L R
Sbjct: 63 REYVEQFIAGTLPTAALRRIGFPWSEALVERT 94
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ LAA+ I V KVLI D DVHQ
Sbjct: 122 HHAHYDFGSGYCIFNDLILAAQNAIASQQVHKVLIFDCDVHQ 163
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+++ L ++ +PDL++YDAGVD HQ+D+LG LN++ G
Sbjct: 210 YLETVEQTLALLIRIHQPDLILYDAGVDIHQNDDLGLLNISQEG 253
>gi|256425815|ref|YP_003126468.1| histone deacetylase superfamily protein [Chitinophaga pinensis DSM
2588]
gi|256040723|gb|ACU64267.1| histone deacetylase superfamily [Chitinophaga pinensis DSM 2588]
Length = 299
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 63/183 (34%), Gaps = 71/183 (38%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRS------------ 551
THHAF D G GFCL+ND A+AA YL+ +V+KVLI+DLDVHQ +
Sbjct: 116 GTHHAFADRGEGFCLLNDFAIAANYLLHQQLVKKVLIIDLDVHQGNGTAALFEGRPEVYT 175
Query: 552 -------------------IPVPS-------LTVLSSCVP-------------------- 565
+P+P L L C+P
Sbjct: 176 FSMHGAHNYPFHKEVSDWDVPLPDGMNDVDYLRTLGECLPVLINKVKPDIVFYLSGVDIL 235
Query: 566 -------------GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
G RD V T GIP GGGY I + R A
Sbjct: 236 QTDRYGKLQVTHEGCRKRDEMVFHTLKQHGIPCTVAMGGGYSTQIRDIVNAHCNTFRTAA 295
Query: 613 HVY 615
++
Sbjct: 296 EIW 298
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ I L + G+GTA +F+ P V+TFSMH NYPF K+ SD DV + G +D
Sbjct: 150 VLIIDLDVHQGNGTAALFEGRPEVYTFSMHGAHNYPFHKEVSDWDVPLPDGMND 203
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFPM K+ L+R+ +I + +QL P ES L HT Y + + +
Sbjct: 13 LPEGHRFPMVKYELIPAQLLREGIISE-QQLHIPAPAEESTILLTHTAHYWQQLQHQTLS 71
Query: 103 EKEQKVTGFEWSAGLASR 120
+KEQ+ G S L R
Sbjct: 72 DKEQRRIGLPQSPALTLR 89
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL E LP ++ + KPD+V Y +GVD Q D GKL +T G
Sbjct: 206 YLRTLGECLPVLINKVKPDIVFYLSGVDILQTDRYGKLQVTHEG 249
>gi|153000143|ref|YP_001365824.1| histone deacetylase superfamily protein [Shewanella baltica OS185]
gi|160874765|ref|YP_001554081.1| histone deacetylase superfamily protein [Shewanella baltica OS195]
gi|378708018|ref|YP_005272912.1| histone deacetylase superfamily protein [Shewanella baltica OS678]
gi|151364761|gb|ABS07761.1| histone deacetylase superfamily [Shewanella baltica OS185]
gi|160860287|gb|ABX48821.1| histone deacetylase superfamily [Shewanella baltica OS195]
gi|315267007|gb|ADT93860.1| histone deacetylase superfamily [Shewanella baltica OS678]
Length = 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 60/211 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDG+A + + + + S+HC N+P RKQ S D+ + G+DD
Sbjct: 152 HKVLIFDCDV--HQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDN- 208
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L + + L+R+ P++ + AG
Sbjct: 209 ---------LYLETVEQTLA------LLIRIHQPDLILYD---------AG--------- 235
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+D+HQ+ L +L+ GL+ RD VL A S IP
Sbjct: 236 ------------------VDIHQN------DDLGLLNISQEGLFRRDLTVLSMAKSENIP 271
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
+A V GGGY D QL+QR + + AA H++
Sbjct: 272 IAAVIGGGYSRDALQLSQRHSQLFIAANHLW 302
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LPP+HRFP +K++ YL+ +++ + Q P ++ VH
Sbjct: 4 IPLVYHASYSKLALPPHHRFPTTKYANLRQYLLENQLATPA-QFHTPTAMTAQDVMQVHQ 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+EYV +F G + GF WS L R
Sbjct: 63 REYVEQFIAGTLPTAALRRIGFPWSEALVERT 94
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ LAA+ I V KVLI D DVHQ
Sbjct: 122 HHAHYDFGSGYCIFNDLILAAQNAIASQQVHKVLIFDCDVHQ 163
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+++ L ++ +PDL++YDAGVD HQ+D+LG LN++ G
Sbjct: 210 YLETVEQTLALLIRIHQPDLILYDAGVDIHQNDDLGLLNISQEG 253
>gi|344174578|emb|CCA86379.1| histone deacetylase [Ralstonia syzygii R24]
Length = 322
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 96/261 (36%), Gaps = 69/261 (26%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R++V+ L+ E + LVH +Y
Sbjct: 5 YTDHFVLPLPPGHRFPMRKYS-----LLRERVMADVPGLVMHEAPRAGNDALLLVHAPDY 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFFLQRRP 143
V G+ Q+ GF WS + R R T IAV L
Sbjct: 60 VSAVGAGRLDPARQREIGFPWSLAMVERSRRSAGATMAACEAAMIDGIAVNLAGGTHH-- 117
Query: 144 VFFDIAAVLADLICI---AVYLTFFLQRRP------------------------VFFDIA 176
+ D C+ A + ++QRRP + D A
Sbjct: 118 AYADKGGGF----CVFNDAAIASRWIQRRPGRTPDGFPVAIVDLDVHQGNGTASILRDDA 173
Query: 177 AVLADLIHFMVGINTQPVSGYQATLKEHLPG-----------------ILAQFKPDLVIY 219
+V +H G P + L LP + A+F P L+IY
Sbjct: 174 SVFTLSVH---GEKNYPFRKEASDLDVGLPDGCGDEAYLEALAGALDTLAARFAPRLIIY 230
Query: 220 DAGVDPHQHDELGKLNLTDHG 240
AG DPH+ D LG+L LT G
Sbjct: 231 LAGADPHEGDRLGRLKLTMEG 251
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G D
Sbjct: 155 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGD 205
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + + D +N THHA+ D G GFC+
Sbjct: 69 DPARQREIGFPWSLAMVERSRRSAGATMAACEAAMIDGIAVNLAGGTHHAYADKGGGFCV 128
Query: 519 MNDMALAARYLIRH------GIVRKVLIVDLDVHQ 547
ND A+A+R++ R G V IVDLDVHQ
Sbjct: 129 FNDAAIASRWIQRRPGRTPDGF--PVAIVDLDVHQ 161
>gi|421610754|ref|ZP_16051920.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SH28]
gi|408498538|gb|EKK03031.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SH28]
Length = 305
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 69/266 (25%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVID----KSKQLIEPQQISESIAEL 86
+ + +T+ ++ LP HRFPMSK+ L+R +V++ + LI PQ ++
Sbjct: 1 MRLYYTDHFDLPLPEGHRFPMSKYR-----LLRQRVVESEHHRDDTLIVPQAATDEQLLH 55
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFF 146
HT +YV + +G T++E + GF WSA + R R T A R +
Sbjct: 56 CHTPDYVQRVQSGTLTKQEIRRIGFPWSAKMVERSRRSTGATISAA--------RAAIDE 107
Query: 147 DIAAVLAD-------------------LICIAVYLTFFLQRRPVFFDI--------AAVL 179
I+A LA + I + L +R D+ A++L
Sbjct: 108 GISANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDLDVHQGNGTASIL 167
Query: 180 ADLIHFMV----GINTQPVSGYQATLKEHLP-------------GILAQFKP-------- 214
D+ G+ P+ + L LP +LA+ +
Sbjct: 168 KDVPSVFTCSVHGVKNFPLRKMPSDLDISLPDGTGDDDYCDALRSVLAKLEKHQSESGQF 227
Query: 215 DLVIYDAGVDPHQHDELGKLNLTDHG 240
DLVIY AG DP+++D LG+L+LT G
Sbjct: 228 DLVIYLAGADPYKNDRLGRLSLTMDG 253
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLS-DPEINR---FSTHHAFPDHGAGFCLMND 521
R + W + +RS R+ G + R + D I+ THHAF G G+C+ ND
Sbjct: 76 RRIGFPWSAKMVERSR--RSTGATISAARAAIDEGISANLAGGTHHAFAGEGEGYCVFND 133
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R L G++++ I+DLDVHQ
Sbjct: 134 AAVAIRTLQSEGLIQRAAIIDLDVHQ 159
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA I P+VFT S+H +N+P RK SDLD+++ GT D
Sbjct: 153 IDLDVHQGNGTASILKDVPSVFTCSVHGVKNFPLRKMPSDLDISLPDGTGD 203
>gi|217973889|ref|YP_002358640.1| histone deacetylase superfamily protein [Shewanella baltica OS223]
gi|217499024|gb|ACK47217.1| histone deacetylase superfamily [Shewanella baltica OS223]
Length = 302
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 60/211 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDG+A + + + + S+HC N+P RKQ S D+ + G+DD
Sbjct: 152 HKVLIFDCDV--HQGDGSATLSQRHQGIISCSIHCKENFPSRKQHSHHDIELTKGSDDN- 208
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L + + L+R+ P++ + AG
Sbjct: 209 ---------LYLETVEQTLA------LLIRIHQPDLILYD---------AG--------- 235
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+D+H P L +L+ GL+ RD VL A S IP
Sbjct: 236 ------------------VDIH------PNDDLGLLNISQEGLFRRDLTVLSMAKSENIP 271
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
+A V GGGY D QL+QR + + AA H++
Sbjct: 272 IAVVIGGGYSRDALQLSQRHSQLFIAANHLW 302
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LPP+HRFP +K++ YL+ +++ + Q P ++ VH
Sbjct: 4 IPLVYHASYSKLALPPHHRFPTTKYANLRQYLLENQLATPA-QFHTPTAMTVQDVMQVHQ 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+EYV +F G + GF WS L R
Sbjct: 63 REYVEQFIAGTLPTAALRRIGFPWSEALVERT 94
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ LAA+ I V KVLI D DVHQ
Sbjct: 122 HHAHYDFGSGYCIFNDLILAAKNAIASQQVHKVLIFDCDVHQ 163
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+++ L ++ +PDL++YDAGVD H +D+LG LN++ G
Sbjct: 210 YLETVEQTLALLIRIHQPDLILYDAGVDIHPNDDLGLLNISQEG 253
>gi|156324737|ref|XP_001618473.1| hypothetical protein NEMVEDRAFT_v1g154458 [Nematostella vectensis]
gi|156199037|gb|EDO26373.1| predicted protein [Nematostella vectensis]
Length = 152
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP HG+GFC+ ND+A+ A YL+ + +V +V+IVDLDVHQ
Sbjct: 18 GTHHAFPSHGSGFCIFNDLAITASYLLDNNLVTRVMIVDLDVHQ 61
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M + L + GDGTA IF +P VFTFS H +N+P RKQ S+LD++++ G DD T
Sbjct: 52 VMIVDLDVHQGDGTASIFQNEPNVFTFSAHSEKNFPLRKQTSNLDLSLECGMDDLEYLTT 111
Query: 469 A---LTWV 473
LTW+
Sbjct: 112 VRAHLTWL 119
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGE 241
Y T++ HL +L ++PD+V+YDAGVDPH D LG+L LTD+G+
Sbjct: 108 YLTTVRAHLTWLLDMWRPDIVLYDAGVDPHVDDVLGRLKLTDNGK 152
>gi|390944571|ref|YP_006408332.1| deacetylase [Belliella baltica DSM 15883]
gi|390417999|gb|AFL85577.1| deacetylase, histone deacetylase/acetoin utilization protein
[Belliella baltica DSM 15883]
Length = 301
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A++A YL+ + +V+KVL++DLDVHQ
Sbjct: 118 GTHHAFTDRGEGFCLLNDIAISANYLLENFLVKKVLVIDLDVHQ 161
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I ++ Y+ LP HRFPM K+ L+ + + S EP+ + H
Sbjct: 3 LKIAYSPLYQLDLPEGHRFPMEKYELLPEQLLYEGTV-TSANFFEPKDLDNRWVLNTHDF 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVI--AVYLPFFLQRRPVFFDI 148
+Y K N + ++ E + TGF S L R TH++ ++ F + +I
Sbjct: 62 DYFEKLLNLRLSKSEIRKTGFPLSKALIDR------ETHIMQGSIEASLFALEYGIAMNI 115
Query: 149 AA--------------VLADLICIAVY-LTFFLQRRPVFFDI--------AAVLAD---- 181
A +L D+ A Y L FL ++ + D+ A + +
Sbjct: 116 AGGTHHAFTDRGEGFCLLNDIAISANYLLENFLVKKVLVIDLDVHQGNGTAQIFENKDEV 175
Query: 182 LIHFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVD 224
M G + P+ Y L+ HL ++ Q +PD +IY GVD
Sbjct: 176 FTFSMHGASNYPMHKEKSDLDIGLPDKIQDDQYLDLLQLHLVPLIDQVQPDFIIYQCGVD 235
Query: 225 PHQHDELGKLNLTDHG 240
D+LG+L LT G
Sbjct: 236 VLDSDKLGRLGLTIQG 251
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DVGTDDAGNRT 467
++ I L + G+GTA IF+ VFTFSMH NYP K+ SDLD+ + D DD
Sbjct: 152 VLVIDLDVHQGNGTAQIFENKDEVFTFSMHGASNYPMHKEKSDLDIGLPDKIQDDQYLDL 211
Query: 468 VALTWVTFLSQ 478
+ L V + Q
Sbjct: 212 LQLHLVPLIDQ 222
>gi|83816178|ref|YP_446172.1| histone deacetylase/AcuC/AphA family protein [Salinibacter ruber
DSM 13855]
gi|294508098|ref|YP_003572156.1| histone deacetylase [Salinibacter ruber M8]
gi|83757572|gb|ABC45685.1| histone deacetylase/AcuC/AphA family protein [Salinibacter ruber
DSM 13855]
gi|294344426|emb|CBH25204.1| histone deacetylase [Salinibacter ruber M8]
Length = 307
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLM 519
D R + L W L RS I L+ L+D + THHAFP HG GFC++
Sbjct: 72 DHAERRMGLPWSERLVYRSRLAVQGTINAALMALTDGVAANLAGGTHHAFPGHGEGFCVL 131
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A R L ++VLIVDLDVHQ
Sbjct: 132 NDVAVAIRVLQAACWAQRVLIVDLDVHQ 159
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 95/252 (37%), Gaps = 49/252 (19%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ + + Y LP H FPM+KF L+ + +I + ++ P+Q + VHT +Y
Sbjct: 3 VSYCDGYYVPLPEGHPFPMAKFPALHQRLLDEDLI-RPTDVVAPRQADWTDLRRVHTADY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR--------------TDPVPTHVIAVYLPFF 138
+ G ++ ++ G WS L R R TD V ++ F
Sbjct: 62 LTHLAEGSLSDHAERRMGLPWSERLVYRSRLAVQGTINAALMALTDGVAANLAGGTHHAF 121
Query: 139 LQRRPVFFDIAAVLADL-ICIAVYLTFFLQRRPVFFDI--------AAVLAD----LIHF 185
P + VL D+ + I V +R + D+ AAV AD
Sbjct: 122 ----PGHGEGFCVLNDVAVAIRVLQAACWAQRVLIVDLDVHQGNANAAVFADDASVFTFS 177
Query: 186 MVGINTQPVS-----------------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
M G P Y TL+ +LP L +PDLV Y G+D
Sbjct: 178 MHGAKNYPFEKPPSSLDVPLDDATGDQSYLDTLRSYLPQTLDAVQPDLVFYLGGIDVATD 237
Query: 229 DELGKLNLTDHG 240
D G+L+LT G
Sbjct: 238 DRFGRLSLTREG 249
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 60/213 (28%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ R LI++ L + G+ A +F D +VFTFSMH +NYPF K S LDV +D D
Sbjct: 147 AQRVLIVD--LDVHQGNANAAVFADDASVFTFSMHGAKNYPFEKPPSSLDVPLD---DAT 201
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
G+++ T ++L Q + ++ + +F G + D
Sbjct: 202 GDQSYLDTLRSYLPQTLDAVQPDLVFYL----------------------GGIDVATDDR 239
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
L R G L+ RD YVL+ +
Sbjct: 240 FGRLSLTREG---------------------------------LHARDRYVLEQIQAHNH 266
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
PVA + GGY + A I++R A V++
Sbjct: 267 PVALLLSGGYADTPETTADLHAIMYREAARVFE 299
>gi|170744430|ref|YP_001773085.1| histone deacetylase superfamily protein [Methylobacterium sp. 4-46]
gi|168198704|gb|ACA20651.1| histone deacetylase superfamily [Methylobacterium sp. 4-46]
Length = 298
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 94/250 (37%), Gaps = 42/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI+ YE LP HRFPM K+ + L ++ + P+ L H +
Sbjct: 2 LPIVFHPAYEAELPEGHRFPMRKYGRLAEILRARGLVPNG--FVRPEPAGAPTVALAHDR 59
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA-VYLPFFL---------- 139
YV + +K G AG+A R T + + L L
Sbjct: 60 AYVDQVLTATVPRAVEKRIGLPVDAGVARRSLASAGGTLLAGRLALAGGLAGSTAGGSHH 119
Query: 140 QRRP------VFFDIA-AVLADL----ICIAVYLTFFLQRRPVFFDIAAVLADLIHF-MV 187
RR V D+A A LA L I A+ + + + D A DL F M
Sbjct: 120 ARRAGGGGFCVLNDVAVAALALLREGAIRRALVIDLDVHQGDGTADCLAGEPDLFTFSMH 179
Query: 188 GINTQPVSGYQATLKEHLP------GILA-----------QFKPDLVIYDAGVDPHQHDE 230
G P L LP G +A +PDLV Y+AGVDPH+ D
Sbjct: 180 GERNYPTDKVPGDLDVGLPDGLDDAGYMAALVRHVPRLLDALRPDLVFYNAGVDPHRDDR 239
Query: 231 LGKLNLTDHG 240
LG+L LTD G
Sbjct: 240 LGRLALTDEG 249
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA G GFC++ND+A+AA L+R G +R+ L++DLDVHQ
Sbjct: 116 GSHHARRAGGGGFCVLNDVAVAALALLREGAIRRALVIDLDVHQ 159
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
RAL+++ L + GDGTA +P +FTFSMH RNYP K DLDV + G DDAG
Sbjct: 149 RALVID--LDVHQGDGTADCLAGEPDLFTFSMHGERNYPTDKVPGDLDVGLPDGLDDAG 205
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD +V+ GIP+A V GGGY +ID LA R ++ A
Sbjct: 249 GLLARDRHVVGETRRRGIPLAAVIGGGYATEIDALAARHALVFEA 293
>gi|430808555|ref|ZP_19435670.1| histone deacetylase superfamily protein [Cupriavidus sp. HMR-1]
gi|429499064|gb|EKZ97519.1| histone deacetylase superfamily protein [Cupriavidus sp. HMR-1]
Length = 307
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D A R + W + +RS + I + L + THHA+ D GAGFC+
Sbjct: 69 DVARQREIGFPWSHEMVERSRRSAGATIAACRVALEQGIAANLAGGTHHAYADKGAGFCV 128
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
ND A+AAR L R G VR+V ++DLDVHQ + + P++ LS
Sbjct: 129 FNDAAIAARRLQRDGSVRRVAVIDLDVHQGNGTASILRDDPTIFTLS 175
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
I L + G+GTA I DP +FT S+H +NYPFRK+ SDLDV + G DD G VAL
Sbjct: 151 IDLDVHQGNGTASILRDDPTIFTLSLHGEKNYPFRKEASDLDVGLPDGCDD-GAYAVALA 209
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEYVHKFFNGK 100
LPP HRFPM K+S ++RD V+ + +L E + + LVHT Y+ + G+
Sbjct: 13 LPPGHRFPMRKYS-----MLRDAVVREVGGVELREAPRADDETLALVHTAAYIEEVSTGQ 67
Query: 101 TTEKEQKVTGFEWSAGLASRVR 122
Q+ GF WS + R R
Sbjct: 68 LDVARQREIGFPWSHEMVERSR 89
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L L + A+F PDL+IY AG DPH+ D LG+L LT G
Sbjct: 202 GAYAVALASALDTLFARFDPDLLIYLAGADPHEGDRLGRLKLTMAG 247
>gi|340618079|ref|YP_004736532.1| histone deacetylase [Zobellia galactanivorans]
gi|339732876|emb|CAZ96251.1| Deacetylase, histone deacetylase family [Zobellia galactanivorans]
Length = 300
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF D +VFTFSMH NYPF+K+ SDLD+ + TDD
Sbjct: 151 ILIVDLDVHQGNGTAEIFGNDTSVFTFSMHGASNYPFKKERSDLDIPLAKYTDDT----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T+++ L Q ++ + F+ L+ +I
Sbjct: 206 --TYLSLLKQTLPRLISEEKPDFIFYLAGVDI---------------------------- 235
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
I L L+ + G RD +VL+T IPV
Sbjct: 236 -----------------------IGSDKLGTLALSIDGCKERDAFVLETCHRLQIPVQCS 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY I + + +R A +Y
Sbjct: 273 MGGGYSPAIKTIVEAHANTYRLAQQIY 299
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FC++ND A+ ARYL H + +K+LIVDLDVHQ
Sbjct: 117 GTHHAYTDHGEAFCMLNDQAIGARYLQAHQLAKKILIVDLDVHQ 160
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + Y+ +LP HRFPM K+ L+ + ++ EP+ ++ VH
Sbjct: 2 LKIAYHPIYKHSLPEGHRFPMLKYELLPKQLLHEGTC-TAENFFEPEIPNDKYIVAVHEP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
EY + N K + ++ + GF + L R R
Sbjct: 61 EYFYDLLNLKISSRDARKIGFPLTEDLIERER 92
>gi|318042114|ref|ZP_07974070.1| histone deacetylase family protein [Synechococcus sp. CB0101]
Length = 304
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 91/213 (42%), Gaps = 61/213 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M I L + GD TA IF +P VFT S+HC N+P RKQCSD+D+ +D G +D
Sbjct: 152 LMVIDLDVHQGDATAAIFADEPRVFTVSVHCQSNFPLRKQCSDVDLPLDDGLEDD----- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+LS + + N LL P++ ++ AG D L
Sbjct: 207 -----AYLSAIGDLIPN------LLDQVRPDLVLYN---------AGVDPHRDDRLGKLC 246
Query: 529 LIRHGIV-RKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
L G++ R L++D + RSIP VAT
Sbjct: 247 LTSTGLLNRDRLVLDACLR---RSIP-------------------------------VAT 272
Query: 588 VTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
V GGGY D++ L +R ++ RAAT + GL
Sbjct: 273 VIGGGY-DDLNPLVERHGLVFRAATEQARLHGL 304
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+PDHG+GFC+ ND A+AAR L+ V++++++DLDVHQ
Sbjct: 118 GTHHAYPDHGSGFCIFNDCAVAARVLLAESRVQQLMVIDLDVHQ 161
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P ++ Y LP +HRFPM+KF + + L++D+ + Q +EP ELVH
Sbjct: 4 PFVYHPAYSAPLPSSHRFPMAKF-RLLHQLLQDQGLANVDQFVEPLPAPRRWLELVHEPR 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y F G+ + +EQ+ G + L R
Sbjct: 63 YHRAFARGELSHQEQRRIGLPATTPLVQR 91
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + + +P +L Q +PDLV+Y+AGVDPH+ D LGKL LT G
Sbjct: 207 AYLSAIGDLIPNLLDQVRPDLVLYNAGVDPHRDDRLGKLCLTSTG 251
>gi|374596386|ref|ZP_09669390.1| histone deacetylase superfamily [Gillisia limnaea DSM 15749]
gi|373871025|gb|EHQ03023.1| histone deacetylase superfamily [Gillisia limnaea DSM 15749]
Length = 300
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ +HG FCL+ND A+AARYL ++ + +K+LIVDLDVHQ
Sbjct: 117 GTHHAYTNHGEAFCLLNDQAIAARYLQKNKLAKKILIVDLDVHQ 160
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF D +VFTFS+H NYPF+K+ SDLD+A+ GT D
Sbjct: 151 ILIVDLDVHQGNGTAEIFANDDSVFTFSIHGRNNYPFKKEHSDLDIAMPDGTGD 204
>gi|320335190|ref|YP_004171901.1| histone deacetylase [Deinococcus maricopensis DSM 21211]
gi|319756479|gb|ADV68236.1| Histone deacetylase [Deinococcus maricopensis DSM 21211]
Length = 299
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFL---LRLSDPEINRFSTHHAFPDHGAGFCLMND 521
R L W + +R+ + G F L LR+ THHAF D GFCL+ND
Sbjct: 73 EREFGLPWSEGVVERARRA-TGGTFAALHDALRVGWGINLAGGTHHAFRDRAGGFCLLND 131
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ ARY + G+ R+VLI+DLDVHQ
Sbjct: 132 AAMVARYALDEGLARRVLILDLDVHQ 157
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ R LI++ L + GDGTA + P FT S+H RNYPFRKQ SDLD+ + G DA
Sbjct: 145 ARRVLILD--LDVHQGDGTANLLGGVPHTFTLSVHGERNYPFRKQTSDLDIGLPDGVTDA 202
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 86/243 (35%), Gaps = 46/243 (18%)
Query: 38 KYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFF 97
KY LP HRFP K++ L ++ + + ++AE H Y+ ++
Sbjct: 11 KYTFPLPEGHRFPAYKYAAVAERLAPLLPVEDTPG------VEWALAERTHDPAYLTRWR 64
Query: 98 NGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV-------IAVYLPFFLQRRPVFFDIAA 150
G +E++ G WS G+ R R T + + F D A
Sbjct: 65 TGAVERREEREFGLPWSEGVVERARRATGGTFAALHDALRVGWGINLAGGTHHAFRDRAG 124
Query: 151 ---VLADLICIAVY-LTFFLQRRPVFFDI--------AAVLADLIHFMV----GINTQPV 194
+L D +A Y L L RR + D+ A +L + H G P
Sbjct: 125 GFCLLNDAAMVARYALDEGLARRVLILDLDVHQGDGTANLLGGVPHTFTLSVHGERNYPF 184
Query: 195 -----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
+ Y L E + L F+PD+V+Y AG D D G+ LT
Sbjct: 185 RKQTSDLDIGLPDGVTDAEYLRVLDERVRPALEAFRPDVVVYLAGADVLAGDRFGRFQLT 244
Query: 238 DHG 240
G
Sbjct: 245 LDG 247
>gi|32477270|ref|NP_870264.1| histone deacetylase [Rhodopirellula baltica SH 1]
gi|417302473|ref|ZP_12089573.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica WH47]
gi|32447821|emb|CAD77339.1| conserved hypothetical protein-putative histone deacetylase
[Rhodopirellula baltica SH 1]
gi|327541213|gb|EGF27757.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica WH47]
Length = 305
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 69/266 (25%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVID----KSKQLIEPQQISESIAEL 86
+ + +T+ ++ LP HRFPMSK+ L+R +V++ + LI PQ ++
Sbjct: 1 MRLYYTDHFDLPLPEGHRFPMSKYR-----LLRQRVVESEHHRDDTLIVPQAATDEQLLH 55
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFF 146
HT +YV + +G T++E + GF WSA + R R T A R +
Sbjct: 56 CHTPDYVQRVQSGTLTKQEIRRIGFPWSAKMVERSRRSTGATISAA--------RAALDE 107
Query: 147 DIAAVLAD-------------------LICIAVYLTFFLQRRPVFFDI--------AAVL 179
I+A LA + I + L +R D+ A++L
Sbjct: 108 GISANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRAAIIDLDVHQGNGTASIL 167
Query: 180 ADLIHFMV----GINTQPVSGYQATLKEHLP-------------GILAQFKP-------- 214
D+ G+ P+ + L LP +LA+ +
Sbjct: 168 KDVPSVFTCSVHGVKNFPLRKMPSDLDVSLPDGTGDDDYCDALRSVLAKLEKHQSESGQF 227
Query: 215 DLVIYDAGVDPHQHDELGKLNLTDHG 240
DLVIY AG DP+++D LG+L+LT G
Sbjct: 228 DLVIYLAGADPYKNDRLGRLSLTMDG 253
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLS-DPEINR---FSTHHAFPDHGAGFCLMND 521
R + W + +RS R+ G + R + D I+ THHAF G G+C+ ND
Sbjct: 76 RRIGFPWSAKMVERSR--RSTGATISAARAALDEGISANLAGGTHHAFAGEGEGYCVFND 133
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R L G++++ I+DLDVHQ
Sbjct: 134 AAVAIRTLQSEGLIQRAAIIDLDVHQ 159
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA I P+VFT S+H +N+P RK SDLDV++ GT D
Sbjct: 153 IDLDVHQGNGTASILKDVPSVFTCSVHGVKNFPLRKMPSDLDVSLPDGTGD 203
>gi|384430533|ref|YP_005639893.1| histone deacetylase [Thermus thermophilus SG0.5JP17-16]
gi|333966001|gb|AEG32766.1| Histone deacetylase [Thermus thermophilus SG0.5JP17-16]
Length = 294
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K ++ + L + G+GTAF F +DP+VFT S+H RNYP RK+ SDLDV + GT
Sbjct: 139 KEGFSGRVLVVDLDAHQGNGTAFFFREDPSVFTLSLHGERNYPLRKEKSDLDVGLPDGTG 198
Query: 462 DAGNRTVALTWVTFLSQRSEKMR 484
D A W L + EK R
Sbjct: 199 DE-----AYLWA--LEEALEKAR 214
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYL-IRHGIVRKVLIVDLDVHQ 547
THHAFP G+ L ND+A+A +L + G +VL+VDLD HQ
Sbjct: 111 GTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVDLDAHQ 155
>gi|319953397|ref|YP_004164664.1| histone deacetylase [Cellulophaga algicola DSM 14237]
gi|319422057|gb|ADV49166.1| Histone deacetylase [Cellulophaga algicola DSM 14237]
Length = 300
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
A I+ + L + G+GTA IF D +VFTFSMH NYPFRK+ SDLD+A+ GT+D
Sbjct: 149 AQILIVDLDVHQGNGTAEIFQNDTSVFTFSMHGESNYPFRKEASDLDIALKKGTED 204
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FC++ND ++ ARYL + ++LIVDLDVHQ
Sbjct: 117 GTHHAYSDHGEAFCMLNDQSIGARYLQAKKLAAQILIVDLDVHQ 160
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y+ LP HRFPM+K+ L+ + K + EP+ ++ VH EY + N
Sbjct: 10 YKHHLPDGHRFPMAKYDLLPQQLIYEGTC-KKENFFEPEIPNDKYILAVHDAEYYYDLLN 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVR 122
K +K + GF S L R R
Sbjct: 69 IKIDQKAARKIGFPLSEDLIERER 92
>gi|71907996|ref|YP_285583.1| histone deacetylase superfamily protein [Dechloromonas aromatica
RCB]
gi|71847617|gb|AAZ47113.1| Histone deacetylase superfamily [Dechloromonas aromatica RCB]
Length = 300
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 451 DLDV--AIDVGT-DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--T 505
DLD AI +G +A + + W + +RS + I L++ + T
Sbjct: 58 DLDYIQAISIGELSEAAQKAIGFPWSQGMVERSRRSAGATICACRAALAEDVSANLAGGT 117
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF DHG GFC+ ND A+AAR + G ++VLIVD DVHQ
Sbjct: 118 HHAFRDHGEGFCIFNDAAVAARTMQAEGRAKRVLIVDCDVHQ 159
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK-QLIEPQQISESIAELVHT 89
+ + +T+ + LP HRFPM K+S+ L+ +S QL P ++ H
Sbjct: 1 MRLFYTDVFVLPLPAGHRFPMEKYSRLRQALLASGEFSESDFQL--PHAATDEELGRAHD 58
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT 128
+Y+ G+ +E QK GF WS G+ R R T
Sbjct: 59 LDYIQAISIGELSEAAQKAIGFPWSQGMVERSRRSAGAT 97
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 401 MKSSHRA-LIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DV 458
M++ RA ++ + + G+GTA I D ++FTFS+H RN+PF K+ SDLD+ + D
Sbjct: 141 MQAEGRAKRVLIVDCDVHQGNGTASILRGDDSIFTFSIHGARNFPFDKEQSDLDIELPDG 200
Query: 459 GTDDA 463
+DDA
Sbjct: 201 CSDDA 205
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
Y A L+E L +PDLVIY AG DP+ D LG+L L+
Sbjct: 206 YLAHLEEGLGIAFDASRPDLVIYLAGADPYHDDRLGRLGLS 246
>gi|145354637|ref|XP_001421586.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581824|gb|ABO99879.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 323
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 556 SLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
+L L V GLY R+ V+DT + AGIP+A V GGGY DID+LA R ++HR A ++
Sbjct: 259 TLGHLDLTVEGLYRRERMVMDTVLGAGIPLAGVVGGGYSPDIDELASRHAVLHRVAREMF 318
Query: 616 KERGL 620
+ GL
Sbjct: 319 VDHGL 323
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
R + L W L +R+ M +G L +++ THHA D G+GFC++ND
Sbjct: 95 EREIGLPWSDALVERT-LMEVSGTMLTVDLAMKVGLCVNTAGGTHHAHRDRGSGFCIVND 153
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
+A++A I G V +V+I+DLDVHQ
Sbjct: 154 LAVSALRAIDSGAVSRVMIIDLDVHQ 179
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDD 462
+M I L + GDGTA I +P VFTFS H N+P RKQ S DV + G TDD
Sbjct: 170 VMIIDLDVHQGDGTAAILANEPGVFTFSAHAKSNFPARKQQSTRDVELPRGMTDD 224
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL--V 87
+P++H Y + +P HRFPM+ F + + L + VI + + + S+ EL
Sbjct: 17 VPVVHHASYSKPVMPRGHRFPMTVFQRVHDILREEGVIARGQTNCFVPGRAPSVDELCRA 76
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
H ++YV K ++ G WS L R
Sbjct: 77 HDEDYVRDVRASALDAKREREIGLPWSDALVER 109
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
L F+P+LVIYDAGVD +D LG L+LT G
Sbjct: 238 LEDFRPELVIYDAGVDVTSNDTLGHLDLTVEG 269
>gi|343494601|ref|ZP_08732851.1| histone deacetylase superfamily protein [Vibrio nigripulchritudo
ATCC 27043]
gi|342825014|gb|EGU59525.1| histone deacetylase superfamily protein [Vibrio nigripulchritudo
ATCC 27043]
Length = 308
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 53/259 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVR----DKVIDKSKQLIEPQQISESIAE 85
+P+I+ Y E +LPP HR+P++K+ + + +V+ D + +EP +S
Sbjct: 2 IPVIYHPIYSELSLPPKHRYPITKYRRLYENVVQTLEHDAQWREGLSFVEPTALSTEQVL 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH +EY+ F+G+ + + GF WS L +R T T H IA++L
Sbjct: 62 EVHDEEYIQLLFSGEMPAAKMRRIGFPWSEQLITRTLTSAGGTVETAKQAIEHGIALHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT----- 191
F L + + +A + + + V AD +H G T
Sbjct: 122 GGYHHAHKDFGSGFCLINDLVLAAHEAL---KNENIDKVLIVDAD-VHHGDGTATLCEGR 177
Query: 192 -----------------QPVSGYQATLKEHL--PGILAQFK-----------PDLVIYDA 221
+P S L + L+ FK PDL+IYDA
Sbjct: 178 EDIITLSFHCDKNFPARKPTSDMDVPLAREIGDEEFLSSFKQVVEMAINIHQPDLIIYDA 237
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVD H DELG L ++ G
Sbjct: 238 GVDIHTDDELGYLQVSAEG 256
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ LAA +++ + KVLIVD DVH
Sbjct: 125 HHAHKDFGSGFCLINDLVLAAHEALKNENIDKVLIVDADVH 165
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 538 VLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADI 597
++I D V HT L L G+Y RD+++ TA +AGIP+A+V GGGY +
Sbjct: 232 LIIYDAGVDIHTDD----ELGYLQVSAEGIYQRDHFIFLTAKNAGIPIASVVGGGYRTEH 287
Query: 598 DQLA--QRQTIIHRAATHVYKE 617
L RQ I +AA +V+K+
Sbjct: 288 QDLVPIHRQLI--QAAINVFKD 307
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 399 SGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDV--AI 456
+K+ + ++ + + GDGTA + + + T S HC +N+P RK SD+DV A
Sbjct: 147 EALKNENIDKVLIVDADVHHGDGTATLCEGREDIITLSFHCDKNFPARKPTSDMDVPLAR 206
Query: 457 DVGTDD 462
++G ++
Sbjct: 207 EIGDEE 212
>gi|120437426|ref|YP_863112.1| histone deacetylase [Gramella forsetii KT0803]
gi|117579576|emb|CAL68045.1| histone deacetylase family protein [Gramella forsetii KT0803]
Length = 300
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 38/55 (69%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+GTA IF D +VFTFSMH NYPFRK+ SDLD+ D GT DA
Sbjct: 151 ILMIDLDVHQGNGTAEIFKNDASVFTFSMHGKGNYPFRKEKSDLDIEFDDGTQDA 205
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + FCL+ND A+ ARYL G+ +K+L++DLDVHQ
Sbjct: 117 GTHHAFTNRAEAFCLLNDQAIGARYLQEKGLAKKILMIDLDVHQ 160
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 49/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y+ LP HRFPM K+ L+ + + + +P+ ES VH EYV + N
Sbjct: 10 YKHPLPEGHRFPMEKYDLLPKQLLHEGTCN-DENFFKPEFPEESHILNVHDPEYVKRLKN 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVR---------TDPVPTHVIAVYLP-----FFLQRRPV 144
++KE +V+GF S L +R + D + IA+ + F R
Sbjct: 69 LDLSKKEIRVSGFPLSQELVNREQIIANGTIKACDYALKNGIAMNIAGGTHHAFTNRAEA 128
Query: 145 FFDIAAVLADLICIAVYL-TFFLQRRPVFFDI--------AAVL---ADLIHF-MVGINT 191
F +L D A YL L ++ + D+ A + A + F M G
Sbjct: 129 F----CLLNDQAIGARYLQEKGLAKKILMIDLDVHQGNGTAEIFKNDASVFTFSMHGKGN 184
Query: 192 QPVSGYQATL-----------------KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
P ++ L K LP ++ + +PD + Y GVD + D+LG+L
Sbjct: 185 YPFRKEKSDLDIEFDDGTQDAKYLEKLKSILPKLIEKTRPDFIFYLCGVDILKTDKLGRL 244
Query: 235 NLTDHG 240
+ + G
Sbjct: 245 SCSIEG 250
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 552 IPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
+ L LS + G RD +VL T IPV GGGY DI + + +R A
Sbjct: 236 LKTDKLGRLSCSIEGCRERDRFVLQTCHDLNIPVECSMGGGYSKDIKHIIEAHANTYRLA 295
Query: 612 THVY 615
+Y
Sbjct: 296 QQIY 299
>gi|87120621|ref|ZP_01076515.1| Histone deacetylase superfamily protein [Marinomonas sp. MED121]
gi|86164264|gb|EAQ65535.1| Histone deacetylase superfamily protein [Marinomonas sp. MED121]
Length = 282
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 90/232 (38%), Gaps = 41/232 (17%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
M KF+ L R V+ L P +S + H EYV F G+ ++K + G
Sbjct: 1 MQKFALLEEELRRAGVL-TDNNLFSPSPMSLTTLMRAHDPEYVQNFVRGRMSDKAMREIG 59
Query: 111 FEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQRRPVFFDIA-AVLADLICIAV 160
WS L R + D + IAV+L + + D A+
Sbjct: 60 LPWSDWLVERTLRAVSGTLLTADLALEYGIAVHLAGGTHHAHKDYGTGFCIFNDQAVAAI 119
Query: 161 YLTFFLQRRPVFF---------DIAAVLA--DLIHFM--------------VGINTQPVS 195
+L + + V AA+ A D+I + GIN Q
Sbjct: 120 HLIESGKAKKVLVLDCDVHQGDGTAAMCASYDVIETVSWHCEENYPAVKQAAGINIQIPK 179
Query: 196 G-----YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGEC 242
G Y A LK +P +L + PD + YDAGVD H+ D LG LNLTD G C
Sbjct: 180 GAGNAEYLAILKADIPRLLDKINPDFIFYDAGVDVHKDDRLGFLNLTDEGIC 231
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLM 519
D R + L W +L +R+ + + + L L + THHA D+G GFC+
Sbjct: 52 DKAMREIGLPWSDWLVERTLRAVSGTLLTADLALEYGIAVHLAGGTHHAHKDYGTGFCIF 111
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+AA +LI G +KVL++D DVHQ
Sbjct: 112 NDQAVAAIHLIESGKAKKVLVLDCDVHQ 139
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 60/212 (28%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
++S ++ + + GDGTA + + T S HC NYP KQ + +++ I G
Sbjct: 122 IESGKAKKVLVLDCDVHQGDGTAAMCASYDVIETVSWHCEENYPAVKQAAGINIQIPKGA 181
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFSTHHAFPDHGAGFCLM 519
N +L +L+ P + ++ + F D G
Sbjct: 182 ------------------------GNAEYLAILKADIPRLLDKINPDFIFYDAG------ 211
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAI 579
+DVH+ R L L+ G+ RD YV++
Sbjct: 212 -----------------------VDVHKDDR------LGFLNLTDEGICQRDQYVINECR 242
Query: 580 SAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
+P+A V GGGY D ++A R +I+H+AA
Sbjct: 243 KRNLPLACVIGGGYDKDQAKVAWRHSILHKAA 274
>gi|410030521|ref|ZP_11280351.1| deacetylase [Marinilabilia sp. AK2]
Length = 300
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF K+P VFTFSMH NYP K+ SDLD+ + DDA
Sbjct: 151 ILVVDLDVHQGNGTAEIFRKEPKVFTFSMHGASNYPMHKEKSDLDIGLPDHADDA----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T++ L E + + F++ S ++ LA+
Sbjct: 206 --TYLELLDTHLEPLMDKVAPDFIIFQSGVDV-----------------------LASDK 240
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L R G+ + G RD VL+TA +P+
Sbjct: 241 LGRLGL----------------------------SLQGCKSRDKKVLETAKRHKVPIMCC 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY I Q+ + +R A +Y
Sbjct: 273 MGGGYSQKISQIIEAHANTYRLAQDIY 299
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+ A YL+ + + +++L+VDLDVHQ
Sbjct: 117 GTHHAFTDRGEGFCLLNDIAITANYLLENNLAKQILVVDLDVHQ 160
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 54/269 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + KY LP HRFPM K++ L+ + ++ S EP+ +S H
Sbjct: 2 LKIAWSEKYCHPLPKGHRFPMEKYNLLPEQLLYEGTVN-SCNFFEPEALSREWIVNTHKS 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVI--AVYLPFFLQRRPVFFDI 148
Y K + ++ E + TGF S L R H++ +V F V +I
Sbjct: 61 AYFEKLESLSLSKSEIRKTGFPLSKALVER------EIHIMHGSVQAALFALEYGVAMNI 114
Query: 149 AA--------------VLADLICIAVY-LTFFLQRRPVFFDIAAVLAD------------ 181
A +L D+ A Y L L ++ + D+ +
Sbjct: 115 AGGTHHAFTDRGEGFCLLNDIAITANYLLENNLAKQILVVDLDVHQGNGTAEIFRKEPKV 174
Query: 182 LIHFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVD 224
M G + P+ + Y L HL ++ + PD +I+ +GVD
Sbjct: 175 FTFSMHGASNYPMHKEKSDLDIGLPDHADDATYLELLDTHLEPLMDKVAPDFIIFQSGVD 234
Query: 225 PHQHDELGKLNLTDHGECISSSARISSEA 253
D+LG+L L+ G C S ++ A
Sbjct: 235 VLASDKLGRLGLSLQG-CKSRDKKVLETA 262
>gi|262276254|ref|ZP_06054063.1| histone deacetylase/AcuC/AphA family protein [Grimontia hollisae
CIP 101886]
gi|262220062|gb|EEY71378.1| histone deacetylase/AcuC/AphA family protein [Grimontia hollisae
CIP 101886]
Length = 304
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 107/253 (42%), Gaps = 48/253 (18%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIE--PQQISESIAELV 87
LP+I+ Y + LP HR+P+ K+ L+RD + + + E P+ I+ + + +
Sbjct: 2 LPVIYHPIYSDFPLPEGHRYPLQKYR-----LLRDYLDTHAFPVTEYRPRPINSEVLKQI 56
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAVYLPFF 138
H YV G + + GF WS L R T D H +A++L
Sbjct: 57 HDAGYVEALVKGTLPLVKMRRIGFPWSEALIQRSLTSLGGTTLVVDKAIKHGVAIHLTGG 116
Query: 139 LQRRPVFFDIAAVL-ADLICIAVY-LTFFLQRRPVFFD-----------IAAVLADLIHF 185
F L DL+ A + LT + + D +AA +D++ F
Sbjct: 117 YHHAHYDFGSGFCLFNDLVLAASHALTHEGIDKVLIVDCDVHHGDGTATLAAGRSDIVTF 176
Query: 186 MVGI-----NTQPVSGYQ----------ATLKEHLPGI---LAQFKPDLVIYDAGVDPHQ 227
V + +P S A L +P + LAQ++PDLVIYDAGVD HQ
Sbjct: 177 SVHCEKNFPSRKPASDIDLPLPMGTTSDAYLSAFIPCLTLALAQYQPDLVIYDAGVDIHQ 236
Query: 228 HDELGKLNLTDHG 240
DELG LN+ G
Sbjct: 237 DDELGYLNVCQQG 249
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 466 RTVALTWVTFLSQRS-----------EKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGA 514
R + W L QRS +K +G+ + L HHA D G+
Sbjct: 76 RRIGFPWSEALIQRSLTSLGGTTLVVDKAIKHGVAIHLTG---------GYHHAHYDFGS 126
Query: 515 GFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
GFCL ND+ LAA + + H + KVLIVD DVH
Sbjct: 127 GFCLFNDLVLAASHALTHEGIDKVLIVDCDVHH 159
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
GDGTA + + TFS+HC +N+P RK SD+D+ + +GT
Sbjct: 160 GDGTATLAAGRSDIVTFSVHCEKNFPSRKPASDIDLPLPMGT 201
>gi|407700796|ref|YP_006825583.1| histone deacetylase family protein [Alteromonas macleodii str.
'Black Sea 11']
gi|407249943|gb|AFT79128.1| histone deacetylase family protein [Alteromonas macleodii str.
'Black Sea 11']
Length = 273
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 58/203 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA + + D +FT S+H +N+P RKQ SD+D+ +D GT+D
Sbjct: 125 VLIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQRSDIDIGLDKGTEDD----- 179
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L Q ++R P+
Sbjct: 180 --EYLTTLEQ---------ALTMVMRQFQPD----------------------------- 199
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+I D V H L L G+Y RD V A S G+P+A V
Sbjct: 200 ---------AIIYDAGVDVHVND----DLGHLHISTQGVYERDKQVFALAESLGVPIAAV 246
Query: 589 TGGGYCADIDQLAQRQTIIHRAA 611
GGGY DI L ++RAA
Sbjct: 247 IGGGYQRDIAALVDVHIQLYRAA 269
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFCL ND+ LAA+ +++ + VLIVDLDVHQ
Sbjct: 93 HHAFADFGSGFCLFNDLYLAAKTMLQTPSIENVLIVDLDVHQ 134
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L ++ QF+PD +IYDAGVD H +D+LG L+++ G
Sbjct: 181 YLTTLEQALTMVMRQFQPDAIIYDAGVDVHVNDDLGHLHISTQG 224
>gi|373949015|ref|ZP_09608976.1| histone deacetylase superfamily [Shewanella baltica OS183]
gi|386325146|ref|YP_006021263.1| histone deacetylase superfamily protein [Shewanella baltica BA175]
gi|333819291|gb|AEG11957.1| histone deacetylase superfamily [Shewanella baltica BA175]
gi|373885615|gb|EHQ14507.1| histone deacetylase superfamily [Shewanella baltica OS183]
Length = 302
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 60/211 (28%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI + + + GDG+A + + + S+HC N+P RKQ S D+ + G+DD
Sbjct: 152 HKVLIFDCDV--HQGDGSATLSQRHQGIIICSIHCKENFPSRKQHSHHDIELTKGSDDN- 208
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+L + + L+R+ P++ + AG
Sbjct: 209 ---------LYLETVEQTLA------LLIRIHQPDLILYD---------AG--------- 235
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+D+HQ+ L +L+ GL+ RD VL A S IP
Sbjct: 236 ------------------VDIHQN------DDLGLLNISQEGLFRRDLTVLSMAKSENIP 271
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
+A V GGGY D QL+QR + + AA H++
Sbjct: 272 IAAVIGGGYSRDALQLSQRHSQLFIAANHLW 302
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+P+++ Y + LPP+HRFP +K++ YL+ D + Q P ++ VH
Sbjct: 4 IPLVYHASYSKLALPPHHRFPTTKYTHLRQYLL-DNQLATPAQFHTPTAMTAQDVMQVHQ 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+EYV +F G + GF WS L R
Sbjct: 63 REYVEQFIAGTLPTAALRRIGFPWSEALVERT 94
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ LAAR I V KVLI D DVHQ
Sbjct: 122 HHAHYDFGSGYCIFNDLILAARNAIASQQVHKVLIFDCDVHQ 163
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+++ L ++ +PDL++YDAGVD HQ+D+LG LN++ G
Sbjct: 210 YLETVEQTLALLIRIHQPDLILYDAGVDIHQNDDLGLLNISQEG 253
>gi|89889818|ref|ZP_01201329.1| deacetylase [Flavobacteria bacterium BBFL7]
gi|89518091|gb|EAS20747.1| deacetylase [Flavobacteria bacterium BBFL7]
Length = 308
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL+ND A+AARY+ H + K+LIVDLDVHQ
Sbjct: 119 GTHHAYTDHGEAFCLLNDQAIAARYIQHHQLADKILIVDLDVHQ 162
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + G+GTA IF D +VFTFSMH NYPF+K+ SDLD+A+ TDD+
Sbjct: 153 ILIVDLDVHQGNGTAEIFRNDDSVFTFSMHGASNYPFKKEISDLDIALPDHTDDS 207
>gi|159469207|ref|XP_001692759.1| histone deacetylase [Chlamydomonas reinhardtii]
gi|158278012|gb|EDP03778.1| histone deacetylase [Chlamydomonas reinhardtii]
Length = 278
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP HG+G+C++ND+A+ A L+ G VR+VL++DLDVHQ
Sbjct: 118 GTHHAFPSHGSGYCILNDLAVTAEVLLAEGAVRRVLVLDLDVHQ 161
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 100/257 (38%), Gaps = 53/257 (20%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSK---FSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL 86
LP+++ Y +PP HRFPM+ F + + ++ + + + + P+ + L
Sbjct: 1 LPVVYHPDYSAPVMPPGHRFPMASTAVFRRIYELVLEEGIAAPHQIHVPPRLPPDEELLL 60
Query: 87 VHTKEYVHKF--------------FNGKTTEKEQKVTG------FEWSAGLASRVRTD-- 124
VH +Y+ F F + +V G S GLA
Sbjct: 61 VHDPDYLALFSSGRLDEERVRRIGFGPAVRRTKAEVAGTLLTARLALSGGLAVNTAGGTH 120
Query: 125 -PVPTHV--------IAVYLPFFLQ----RRPVFFDIAAVLADLICIAVYLTFFLQRRPV 171
P+H +AV L RR + D+ D F + RP
Sbjct: 121 HAFPSHGSGYCILNDLAVTAEVLLAEGAVRRVLVLDLDVHQGDGTA------FIFRDRPD 174
Query: 172 FFDIAAVLADLIHFMVGINT--------QPVSGYQATLKEHLPGILAQFKPDLVIYDAGV 223
F ++ A +T P + Y A + E LP +L FKPDLV+YDAGV
Sbjct: 175 VFTLSVHAASNFPARKQRSTLDIALPDGTPDAVYLARVAEILPAVLRDFKPDLVLYDAGV 234
Query: 224 DPHQHDELGKLNLTDHG 240
DPH D LG+L LTD G
Sbjct: 235 DPHVDDALGRLALTDAG 251
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 78/188 (41%), Gaps = 60/188 (31%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R L+++ L + GDGTAFIF P VFT S+H N+P RKQ S LD+A+ GT DA
Sbjct: 151 RVLVLD--LDVHQGDGTAFIFRDRPDVFTLSVHAASNFPARKQRSTLDIALPDGTPDA-- 206
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+L++ +E I +LR P++
Sbjct: 207 --------VYLARVAE------ILPAVLRDFKPDL------------------------- 227
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
++ D V H +L L+ GL R+ VLDT + G+PV
Sbjct: 228 -------------VLYDAGVDPHVDD----ALGRLALTDAGLARRERLVLDTCLGWGVPV 270
Query: 586 ATVTGGGY 593
A GGGY
Sbjct: 271 AGYVGGGY 278
>gi|376316853|emb|CCG00233.1| histone deacetylase superfamily protein [uncultured Dokdonia sp.]
Length = 300
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL+ND A+AARYL + + +K+LIVDLDVHQ
Sbjct: 117 GTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDLDVHQ 160
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF D +VFTFSMH NYPFRK+ SDLD+A++ T DA T+
Sbjct: 151 ILIVDLDVHQGNGTAEIFTGDDSVFTFSMHGKANYPFRKEISDLDIALETDTGDADYLTI 210
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y+ LP HRFPM K+ LV + D + EP Q++ HT EYV
Sbjct: 10 YKHPLPEGHRFPMEKYDLLPKQLVYEGTCD-ANNFFEPTQVAHEHILRCHTTEYVESLKA 68
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
+ Q+ TGF S L R
Sbjct: 69 LTIDPRAQRKTGFPLSQELVDR 90
>gi|332291650|ref|YP_004430259.1| histone deacetylase [Krokinobacter sp. 4H-3-7-5]
gi|332169736|gb|AEE18991.1| Histone deacetylase [Krokinobacter sp. 4H-3-7-5]
Length = 300
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL+ND A+AARYL + + +K+LIVDLDVHQ
Sbjct: 117 GTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDLDVHQ 160
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + G+GTA IF D +VFTFSMH NYPFRK+ SDLD+A++ T DA
Sbjct: 151 ILIVDLDVHQGNGTAEIFTGDDSVFTFSMHGKANYPFRKEISDLDIALETDTGDA 205
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y+ LP HRFPM K+ LV + + EP ++ HT EYV
Sbjct: 10 YKHPLPEGHRFPMEKYDLLPKQLVYEGTCTED-NFFEPVEVDNEHIVRCHTTEYVESLKA 68
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
+ Q+ TGF S L R
Sbjct: 69 LTIDPRAQRKTGFPLSQELVDR 90
>gi|392967178|ref|ZP_10332596.1| Histone deacetylase [Fibrisoma limi BUZ 3]
gi|387843975|emb|CCH54644.1| Histone deacetylase [Fibrisoma limi BUZ 3]
Length = 300
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPD G GFCL+ND+ +AA YL+ VR++LI+DLDVHQ
Sbjct: 117 GTHHAFPDKGEGFCLLNDVGVAAHYLLETQQVRQILIIDLDVHQ 160
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA +F +P VFTFSMH NYP K+ SDLDV + G +D
Sbjct: 151 ILIIDLDVHQGNGTAVMFQHEPRVFTFSMHGKDNYPLHKEQSDLDVELPTGMED 204
>gi|85374902|ref|YP_458964.1| hypothetical protein ELI_10375 [Erythrobacter litoralis HTCC2594]
gi|84787985|gb|ABC64167.1| hypothetical protein ELI_10375 [Erythrobacter litoralis HTCC2594]
Length = 307
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 94/230 (40%), Gaps = 44/230 (19%)
Query: 53 KFSKTFNYLVRDKVIDKSKQLIE--PQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
KF K F LV + + + + E P+ + E VH EYV + F ++++ G
Sbjct: 11 KFDKYF--LVMEALRASGEPITEHAPEPMPRQWLEAVHCPEYVEQVFTASVPREKERRIG 68
Query: 111 FEWSAGLASRVRTDPVPTHV---IAVYLPFFLQRRP----VFFDIAA---VLADLICIAV 160
F +A +ASRVR T + +A+ + FD A V DL A
Sbjct: 69 FPVTAHIASRVRHTNGGTWLAAQLAMEHGYAANSAAGSHHALFDTGAGYCVFNDLAVAAN 128
Query: 161 YLTFFLQRRPVFF------------DIAAVLADLIHF-MVGINTQPVS------------ 195
L + V + A+ D++ F M PV
Sbjct: 129 RLIAEGDAKRVLVVDLDVHQGDGTASLTALRDDIVTFSMHAEKNFPVRKARSNHDVALPD 188
Query: 196 -----GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL EHLP +L PD+V+Y AGVDPH+ D+LG+LNLT G
Sbjct: 189 GMEDVAYLETLAEHLPRLLDDVAPDIVLYQAGVDPHEDDKLGRLNLTSEG 238
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI G ++VL+VDLDVHQ
Sbjct: 105 GSHHALFDTGAGYCVFNDLAVAANRLIAEGDAKRVLVVDLDVHQ 148
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + GDGTA + + TFSMH +N+P RK S+ DVA+ G +D
Sbjct: 139 VLVVDLDVHQGDGTASLTALRDDIVTFSMHAEKNFPVRKARSNHDVALPDGMED 192
>gi|332663265|ref|YP_004446053.1| histone deacetylase [Haliscomenobacter hydrossis DSM 1100]
gi|332332079|gb|AEE49180.1| Histone deacetylase [Haliscomenobacter hydrossis DSM 1100]
Length = 300
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF DP VFTFSMH +NYP RK+ SDLD+ + TDD
Sbjct: 151 ILVIDLDVHQGNGTAHIFRNDPRVFTFSMHGAKNYPLRKEVSDLDIGLPDKTDD 204
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ G GFC ND+A+AA YL+ H +++K+L++DLDVHQ
Sbjct: 117 GTHHAYAFRGEGFCCTNDIAVAANYLLHHQLLKKILVIDLDVHQ 160
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 103/254 (40%), Gaps = 49/254 (19%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + Y+ LP HRFPM K+ L+ + + ++ P + E+ L HT
Sbjct: 2 LKIAYDPIYKYKLPEGHRFPMIKYELIPEQLLYEGTV-SAENFFNPGPLDEASILLTHTL 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIA- 149
EY + + + TE+E + GF + L R RT T A F+ Q+ V ++A
Sbjct: 61 EYWQRLRDQQLTEREIRAIGFPLTTQLVERSRTIANGTLQCA----FYAQQYGVAMNVAG 116
Query: 150 ------AVLADLIC----IAVYLTFFLQ----RRPVFFDI--------AAVLAD----LI 183
A + C IAV + L ++ + D+ A + +
Sbjct: 117 GTHHAYAFRGEGFCCTNDIAVAANYLLHHQLLKKILVIDLDVHQGNGTAHIFRNDPRVFT 176
Query: 184 HFMVGINTQPVSG-----------------YQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
M G P+ Y LK+ LP +L +P+LV Y +GVD
Sbjct: 177 FSMHGAKNYPLRKEVSDLDIGLPDKTDDRTYLRILKKTLPELLENVQPELVFYLSGVDVL 236
Query: 227 QHDELGKLNLTDHG 240
+ D+LG+L+L+ G
Sbjct: 237 ESDKLGRLSLSPAG 250
>gi|336314525|ref|ZP_08569442.1| deacetylase, histone deacetylase/acetoin utilization protein
[Rheinheimera sp. A13L]
gi|335881065|gb|EGM78947.1| deacetylase, histone deacetylase/acetoin utilization protein
[Rheinheimera sp. A13L]
Length = 319
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 61/204 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA IF +PA+ T S+H +N+P RKQ S D+ + D +L
Sbjct: 163 HQGDGTAAIFSDEPAIITASLHGEKNFPARKQQSSWDLGLPTACTDG----------EYL 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ + + +LLR+ P++ F D G
Sbjct: 213 AAVKQSLE------YLLRIHQPDLVIF-------DAG----------------------- 236
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+D+HQ L +L G+ RD+YVL+ IPVA V GGGY D
Sbjct: 237 ------IDIHQQD------DLGLLHISTAGVAERDWYVLNECHKREIPVAAVIGGGYQRD 284
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
+D L Q + AA +K GL
Sbjct: 285 LDALTQIHLQLFYAA---FKVSGL 305
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 102/254 (40%), Gaps = 55/254 (21%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKV-IDK--SKQLIEPQQISESIAELVHT 89
I H + LP HR+P+ K+ + L+ V +D+ S Q+ Q+ VH
Sbjct: 10 IYHPIYSQLELPFKHRYPIGKYQALYQALLELGVPVDQFTSSQIATTDQLGS-----VHD 64
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT--------------HVIAVYL 135
Y + +G+ K + GF WS L +R T T H+ Y
Sbjct: 65 PFYTKQLISGQLDAKAMRRIGFPWSEQLVTRSLTSVGGTVQTVQLALQQGLALHLSGGYH 124
Query: 136 PFFLQRRPVFFDIAAVLADLICIAVY-LTFFLQR--------------RPVFFDIAAVLA 180
F+ F + DL A Y LT + + +F D A++
Sbjct: 125 HAFVGEGSGF----CLFNDLAVAARYALTQGVDKVLIFDCDVHQGDGTAAIFSDEPAIIT 180
Query: 181 DLIH-------------FMVGINTQPVSG-YQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
+H + +G+ T G Y A +K+ L +L +PDLVI+DAG+D H
Sbjct: 181 ASLHGEKNFPARKQQSSWDLGLPTACTDGEYLAAVKQSLEYLLRIHQPDLVIFDAGIDIH 240
Query: 227 QHDELGKLNLTDHG 240
Q D+LG L+++ G
Sbjct: 241 QQDDLGLLHISTAG 254
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L RS + L L S HHAF G+GFCL
Sbjct: 77 DAKAMRRIGFPWSEQLVTRSLTSVGGTVQTVQLALQQGLALHLSGGYHHAFVGEGSGFCL 136
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPGLYMRDYYVLD 576
ND+A+AARY + G V KVLI D DVHQ T +I ++++ + G
Sbjct: 137 FNDLAVAARYALTQG-VDKVLIFDCDVHQGDGTAAIFSDEPAIITASLHGEKNFPARKQQ 195
Query: 577 TAISAGIPVATVTGGGYCADIDQLAQRQTIIHR 609
++ G+P A T G Y A + Q + IH+
Sbjct: 196 SSWDLGLPTA-CTDGEYLAAVKQSLEYLLRIHQ 227
>gi|114705872|ref|ZP_01438775.1| histone deacetylase family protein [Fulvimarina pelagi HTCC2506]
gi|114538718|gb|EAU41839.1| histone deacetylase family protein [Fulvimarina pelagi HTCC2506]
Length = 300
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 80/203 (39%), Gaps = 58/203 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + + GDGTA IF+ D VFTFS+H +NYP K SDLD+++ D G+
Sbjct: 152 ILIVDCDVHQGDGTARIFEGDSRVFTFSVHGEKNYPAVKANSDLDLSL---PDRTGDTAY 208
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+ L Q E+ + PD F N
Sbjct: 209 LEALIPALDQAFEQAK-------------------------PD----FAFFN-------- 231
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L LS GL RD V+ IPVA V
Sbjct: 232 ------------AGVDPHTDDR------LGRLSLSDEGLAERDRRVIGFLRDRQIPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAA 611
GGGY DI+ LA+R +I+HR A
Sbjct: 274 IGGGYSRDIETLARRHSIVHRVA 296
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGF + ND+A+AA+ L+ G V ++LIVD DVHQ
Sbjct: 118 GSHHASATGGAGFSVFNDVAVAAKVLLADGDVDRILIVDCDVHQ 161
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI+H ++ HRFPMSKFS+ L D +D P +L H
Sbjct: 3 LPIVHHPAFDARFDEAHRFPMSKFSRLAKILKEDG-LDGPNGFYVPAPALPGWLQLAHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
YV + +K GF +A R RT
Sbjct: 62 RYVDQVLGANVPPATEKAIGFVVDPAVALRSRT 94
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 195 SGYQATLKEHLPGI---LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+G A L+ +P + Q KPD ++AGVDPH D LG+L+L+D G
Sbjct: 203 TGDTAYLEALIPALDQAFEQAKPDFAFFNAGVDPHTDDRLGRLSLSDEG 251
>gi|86140956|ref|ZP_01059515.1| Histone deacetylase superfamily protein [Leeuwenhoekiella
blandensis MED217]
gi|85832898|gb|EAQ51347.1| Histone deacetylase superfamily protein [Leeuwenhoekiella
blandensis MED217]
Length = 300
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTV 559
THHA+ HG FCL+ND A+AARYL G+ +++LIVDLDVHQ + + PS+
Sbjct: 117 GTHHAYSGHGEAFCLLNDQAIAARYLQSKGLAKQILIVDLDVHQGNGTAEIFQDDPSVFT 176
Query: 560 LSSCVPGLY 568
S G Y
Sbjct: 177 FSMHGAGNY 185
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + G+GTA IF DP+VFTFSMH NYPF+K+ SDLD+A+ + DA
Sbjct: 151 ILIVDLDVHQGNGTAEIFQDDPSVFTFSMHGAGNYPFKKETSDLDIAVPDKSGDA 205
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 96/254 (37%), Gaps = 49/254 (19%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + Y+ LP HRFPM K+ L+ + ++ EP E VHT+
Sbjct: 2 LKIAYHPIYKHPLPEGHRFPMEKYDLLPKQLLCEGTCTEA-NFFEPGFPEEKYLTAVHTQ 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA 150
EYV + + TGF S L R + T F + + F+IA
Sbjct: 61 EYVTNLKALNLDRRAIRKTGFPLSQELVDREQIIAQGTMTGCE----FALKYGIAFNIAG 116
Query: 151 --------------VLADLICIAVYL-TFFLQRRPVFFDI--------AAVLAD----LI 183
+L D A YL + L ++ + D+ A + D
Sbjct: 117 GTHHAYSGHGEAFCLLNDQAIAARYLQSKGLAKQILIVDLDVHQGNGTAEIFQDDPSVFT 176
Query: 184 HFMVGINTQPV--------------SG---YQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
M G P SG Y A LKE LP ++ Q KPD + Y +GVD
Sbjct: 177 FSMHGAGNYPFKKETSDLDIAVPDKSGDAVYLAKLKETLPRLIDQVKPDFIFYLSGVDIL 236
Query: 227 QHDELGKLNLTDHG 240
+ D+LG+L+ T G
Sbjct: 237 ETDKLGRLSCTVEG 250
>gi|343086372|ref|YP_004775667.1| histone deacetylase superfamily protein [Cyclobacterium marinum DSM
745]
gi|342354906|gb|AEL27436.1| histone deacetylase superfamily [Cyclobacterium marinum DSM 745]
Length = 300
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 476 LSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMALAARYLIRHG 533
L +R ++ N + L L D + THHAF D G GFCL+ND+A+AA++L+
Sbjct: 87 LVEREIQIMNGSVMASLFALKDGIGMNIAGGTHHAFKDRGEGFCLLNDIAIAAKFLLTKN 146
Query: 534 IVRKVLIVDLDVHQ 547
+ KVL+VDLDVHQ
Sbjct: 147 EIDKVLVVDLDVHQ 160
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 80/207 (38%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + G+GTA IF+ DP VFTFSMH NYP K+ SDLDV ++ TDD
Sbjct: 151 VLVVDLDVHQGNGTASIFENDPEVFTFSMHGKHNYPMHKEKSDLDVPLEDQTDDQ----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T+++ L K+ I R + PD +
Sbjct: 206 --TYLSLLESHLPKL----------------ITRVA-----PD----------------F 226
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+I V VL D L L + G RD VL A + IP+
Sbjct: 227 IIYQSGV-DVLATD-------------KLGRLGLTIQGCKERDKLVLTHAKTNKIPIMCC 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY I + + R A ++
Sbjct: 273 MGGGYSLKISDIIEAHANTFRLAQELF 299
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 49/254 (19%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L + + KY LP HRFPM K+ L+ + + + EP+ E + +H
Sbjct: 2 LKVAWSTKYAHPLPEGHRFPMEKYDLLPEQLLYEGTLYED-NFFEPEPCQEEVITAIHES 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA 150
Y+ K ++ E + TGF S L R + +V F + + +IA
Sbjct: 61 LYLEKLKGLSLSKSEIRRTGFPLSKELVER----EIQIMNGSVMASLFALKDGIGMNIAG 116
Query: 151 VL-------ADLIC----IAVYLTFFLQRRP------VFFDI------AAVLAD----LI 183
+ C IA+ F L + V D+ A++ +
Sbjct: 117 GTHHAFKDRGEGFCLLNDIAIAAKFLLTKNEIDKVLVVDLDVHQGNGTASIFENDPEVFT 176
Query: 184 HFMVGINTQPVSGYQATL-----------------KEHLPGILAQFKPDLVIYDAGVDPH 226
M G + P+ ++ L + HLP ++ + PD +IY +GVD
Sbjct: 177 FSMHGKHNYPMHKEKSDLDVPLEDQTDDQTYLSLLESHLPKLITRVAPDFIIYQSGVDVL 236
Query: 227 QHDELGKLNLTDHG 240
D+LG+L LT G
Sbjct: 237 ATDKLGRLGLTIQG 250
>gi|386361161|ref|YP_006059406.1| deacetylase [Thermus thermophilus JL-18]
gi|383510188|gb|AFH39620.1| deacetylase, histone deacetylase/acetoin utilization protein
[Thermus thermophilus JL-18]
Length = 294
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K ++ + L + G+GTAF F +DP+VFT S+H RNYP +K+ SDLDV + GT
Sbjct: 139 KEGFSGRVLVVDLDAHQGNGTAFFFQEDPSVFTLSLHGERNYPLKKERSDLDVGLPDGTG 198
Query: 462 DAGNRTVALTWVTFLSQRSEKMR 484
D A W L + EK R
Sbjct: 199 DE-----AYLWA--LEEALEKAR 214
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYL-IRHGIVRKVLIVDLDVHQ 547
THHAFP G+ L ND+A+A +L + G +VL+VDLD HQ
Sbjct: 111 GTHHAFPGRAEGYSLFNDVAVAILWLRAKEGFSGRVLVVDLDAHQ 155
>gi|321496307|gb|EAQ39532.2| deacetylase [Dokdonia donghaensis MED134]
Length = 300
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL+ND A+AARYL + + +K+LIVDLDVHQ
Sbjct: 117 GTHHAYTDHGEAFCLLNDQAIAARYLQANELAKKILIVDLDVHQ 160
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF D +VFTFSMH NYPFRK+ S+LD+A++ T D
Sbjct: 151 ILIVDLDVHQGNGTAEIFAGDDSVFTFSMHGKANYPFRKEISNLDIALETDTGD 204
>gi|390445539|ref|ZP_10233279.1| histone deacetylase superfamily protein [Nitritalea halalkaliphila
LW7]
gi|389661825|gb|EIM73419.1| histone deacetylase superfamily protein [Nitritalea halalkaliphila
LW7]
Length = 300
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+ A YL+ + RK+LI+DLDVHQ
Sbjct: 117 GTHHAFKDRGEGFCLLNDLAITAFYLLEKKLARKILIIDLDVHQ 160
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 81/207 (39%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + G+GTA IF + P VFTFSMH NYP K+ SDLD+ + TDDA
Sbjct: 151 ILIIDLDVHQGNGTAAIFAEVPEVFTFSMHGEANYPMHKEKSDLDIGLKDKTDDA----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T+++ L + L RL D E F + D LA+
Sbjct: 206 --TYLSLLRET------------LPRLIDAEEPDFLLYQCGVD-----------VLASDK 240
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L R G+ + G RD VL+TA +P+
Sbjct: 241 LGRLGM----------------------------SIQGCKERDRIVLETARKNRLPIMCC 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY I + + +R A ++
Sbjct: 273 MGGGYSEKIAHIIEAHANTYRLAQEIF 299
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 101/256 (39%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L + H+ +Y LP HRFPM K+ L+ + + S P+ +++ H
Sbjct: 2 LKVAHSKRYAHPLPEGHRFPMEKYELLPEQLLYEGTLRPS-NFFSPEALADDWILKAHDP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVI--AVYLPFFLQRRPVFFDI 148
Y ++ ++ E + TGF S L R H++ +V + + + +I
Sbjct: 61 SYFNRLKGLSLSKSEIRRTGFPLSQQLVDR------EVHIMHGSVQAALYAKEFGIAMNI 114
Query: 149 AA--------------VLADLICIAVY-LTFFLQRRPVFFDI--------AAVLADLIHF 185
A +L DL A Y L L R+ + D+ AA+ A++
Sbjct: 115 AGGTHHAFKDRGEGFCLLNDLAITAFYLLEKKLARKILIIDLDVHQGNGTAAIFAEVPEV 174
Query: 186 ----MVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVD 224
M G P+ + Y + L+E LP ++ +PD ++Y GVD
Sbjct: 175 FTFSMHGEANYPMHKEKSDLDIGLKDKTDDATYLSLLRETLPRLIDAEEPDFLLYQCGVD 234
Query: 225 PHQHDELGKLNLTDHG 240
D+LG+L ++ G
Sbjct: 235 VLASDKLGRLGMSIQG 250
>gi|224825370|ref|ZP_03698475.1| histone deacetylase superfamily [Pseudogulbenkiania ferrooxidans
2002]
gi|224602291|gb|EEG08469.1| histone deacetylase superfamily [Pseudogulbenkiania ferrooxidans
2002]
Length = 312
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 100/257 (38%), Gaps = 62/257 (24%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL--VHTK 90
I T+ LPP+HRFP K+ L+ + V + L+EP + + AEL VH
Sbjct: 3 IFRTDHLALPLPPSHRFPAEKYR-----LLAESVAGFAPHLLEPASAA-TPAELCRVHDA 56
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPV------ 144
YVH G E+ Q+ G WS L +R T IA LQ V
Sbjct: 57 AYVHALLEGSLPERAQREIGLPWSPQLVARACHSVGAT--IAAARVALLQGCGVNLAGGT 114
Query: 145 ------------FFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLAD--- 181
F+ AV A L+ ++ RR + D+ AA+ D
Sbjct: 115 HHAQADKGSGFCVFNDVAVAARLLLDEGHI-----RRALVIDLDVHQGNGTAALFRDEAR 169
Query: 182 -LIHFMVGINTQP---VSG--------------YQATLKEHLPGILAQFKPDLVIYDAGV 223
M G N P V+G Y A L +L + +PDLV Y AG
Sbjct: 170 VFTFSMHGQNNFPFRKVAGDRDVELPDGTSDETYLALLSANLEELFRLARPDLVFYLAGA 229
Query: 224 DPHQHDELGKLNLTDHG 240
DP++ D LGKL LT G
Sbjct: 230 DPYEGDRLGKLKLTADG 246
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC+ ND+A+AAR L+ G +R+ L++DLDVHQ
Sbjct: 113 GTHHAQADKGSGFCVFNDVAVAARLLLDEGHIRRALVIDLDVHQ 156
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 18/95 (18%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
RAL+++ L + G+GTA +F + VFTFSMH N+PFRK D DV + GT D
Sbjct: 146 RALVID--LDVHQGNGTAALFRDEARVFTFSMHGQNNFPFRKVAGDRDVELPDGTSDE-- 201
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI 500
T++ LS E+ L RL+ P++
Sbjct: 202 -----TYLALLSANLEE---------LFRLARPDL 222
>gi|317969127|ref|ZP_07970517.1| histone deacetylase family protein [Synechococcus sp. CB0205]
Length = 304
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDDAGNRT 467
+M I L + GD TA IF +P VFT S+HCG N+P RKQ SD+D+A+D G DDA +
Sbjct: 152 LMIIDLDVHQGDATASIFRDEPRVFTLSVHCGSNFPLRKQQSDVDLALDDGLGDDAYLES 211
Query: 468 VALTWVTFLSQRSEKM 483
+ T L Q +
Sbjct: 212 IGDLIPTLLDQEQPDL 227
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+PDHG+GFC+ ND A+AA+ L+ G V++++I+DLDVHQ
Sbjct: 118 GTHHAYPDHGSGFCIFNDFAVAAQVLLAEGQVQRLMIIDLDVHQ 161
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LP+++ Y LP +HRFPM+KF K L+ ++ + + +Q+ P + EL+H
Sbjct: 1 MRLPLVYHPAYSAPLPSSHRFPMAKF-KLLRALLEEQGLAREEQIHTPLPVPRRSLELIH 59
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
++ Y F G+ EQ+ G + L R
Sbjct: 60 SRRYHQAFARGELLPAEQRRIGLPATTPLVQR 91
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++ + +P +L Q +PDLV+Y+AGVDPH+ D LG+LNLTD G
Sbjct: 208 YLESIGDLIPTLLDQEQPDLVLYNAGVDPHREDRLGRLNLTDQG 251
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD VLD+ + IPVATV GGGY A + L R ++ RAA+ + GL
Sbjct: 251 GLLNRDRLVLDSCLRRNIPVATVIGGGYDA-LTPLVLRHGLVFRAASEQARLHGL 304
>gi|392549858|ref|ZP_10296995.1| histone deacetylase [Pseudoalteromonas spongiae UST010723-006]
Length = 302
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LP+++ Y + HRF MSKF++ + YL I++ + L +P ELVH
Sbjct: 5 NLPLVYHPNYSFSFDEKHRFVMSKFARLYQYLDSKGYINQ-RNLYQPPVGDFKPMELVHC 63
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
+ YVH F+ + K + G WS L +R T P+ TH+ A
Sbjct: 64 ESYVHDLFHNQLDSKAMRRIGLPWSEQLMARTFTAPLGTHLAA 106
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + +P VFT S+HC +N+PFRKQ SDLD+ +++G D
Sbjct: 163 HQGDGTAAMLAHNPYVFTCSIHCEKNFPFRKQHSDLDIGLEIGLTD 208
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+A A LI G R VLI D DVHQ
Sbjct: 121 GTHHAHYDFGSGYCMVNDLAYTATRLINEGKARNVLIFDCDVHQ 164
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 556 SLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
+L L G+ RDY VL+ G+PVATV GGGY D +LA+R ++
Sbjct: 244 TLGKLDISWQGIAARDYAVLEICQRKGVPVATVIGGGYDKDHQRLAERHALV 295
>gi|302841815|ref|XP_002952452.1| hypothetical protein VOLCADRAFT_105500 [Volvox carteri f.
nagariensis]
gi|300262388|gb|EFJ46595.1| hypothetical protein VOLCADRAFT_105500 [Volvox carteri f.
nagariensis]
Length = 292
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP HG+G+C++ND+A+ L+ G+VR+VLI+DLDVHQ
Sbjct: 104 GTHHAFPAHGSGYCILNDLAVTTEVLLAEGLVRRVLILDLDVHQ 147
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 90/215 (41%), Gaps = 60/215 (27%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ L + GDGTAFIF P VFT S+H N+P RKQ S LDVA+ GT D
Sbjct: 137 RVLILD--LDVHQGDGTAFIFRDRPDVFTLSVHSSSNFPTRKQRSTLDVALPDGTPDG-- 192
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+L+ R + +LR P+I + H A + +AL+
Sbjct: 193 --------PYLA------RVGDLLPRVLRDFAPDIVLYDA--GVDPHAAD--ALGRLALS 234
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L R R+ L++D T L VP V
Sbjct: 235 DEGLAR----RERLVLD---------------TCLGFDVP-------------------V 256
Query: 586 ATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
A GGGY D+D LA R +HRAA ++ + GL
Sbjct: 257 AGYVGGGYDTDLDVLAGRHLHLHRAAAELWLQYGL 291
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 53/250 (21%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSK--FSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL 86
V+ ++ TL P P+S+ F + + ++ + ++ P+ S L
Sbjct: 3 VNASLVKAIALTLTLAPQ---PLSQAIFRRIYEQILEQGIATPAQIHSPPRLPSYEELHL 59
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSA-------GLASRVRTD---PVPTH------- 129
VH EYVH F + ++ + GF +A GLA P H
Sbjct: 60 VHDPEYVHLFSTCQLDDERVRRIGFGTAATRSPVMHGLAVNTAGGTHHAFPAHGSGYCIL 119
Query: 130 -----VIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIH 184
V L L RR + D+ D F + RP F ++ +H
Sbjct: 120 NDLAVTTEVLLAEGLVRRVLILDLDVHQGDGTA------FIFRDRPDVFTLS------VH 167
Query: 185 FMVGINTQ--------------PVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
T+ P Y A + + LP +L F PD+V+YDAGVDPH D
Sbjct: 168 SSSNFPTRKQRSTLDVALPDGTPDGPYLARVGDLLPRVLRDFAPDIVLYDAGVDPHAADA 227
Query: 231 LGKLNLTDHG 240
LG+L L+D G
Sbjct: 228 LGRLALSDEG 237
>gi|46200256|ref|YP_005923.1| deacetylase [Thermus thermophilus HB27]
gi|46197884|gb|AAS82296.1| deacetylase [Thermus thermophilus HB27]
Length = 294
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K ++ + L + G+GTAF F +DP+VFT S+H RNYP +K+ SDLDV + GT
Sbjct: 139 KEGFSGRVLVVDLDAHQGNGTAFFFREDPSVFTLSLHGERNYPLKKERSDLDVGLPDGTG 198
Query: 462 DAGNRTVALTWVTFLSQRSEKMR 484
D A W L + EK R
Sbjct: 199 DE-----AYLWA--LEEALEKAR 214
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYL-IRHGIVRKVLIVDLDVHQ 547
THHAFP G+ L ND+A+A +L + G +VL+VDLD HQ
Sbjct: 111 GTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVDLDAHQ 155
>gi|254432288|ref|ZP_05045991.1| histone deacetylase family protein [Cyanobium sp. PCC 7001]
gi|197626741|gb|EDY39300.1| histone deacetylase family protein [Cyanobium sp. PCC 7001]
Length = 304
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 59/258 (22%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P+++ Y LP +HRFPM+KF + + + L +P + E VH +
Sbjct: 4 PLVYHPAYSAPLPSSHRFPMAKF-RMLLERLLQLDLATPAALHQPLPVPRRWLEAVHPRA 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL------- 135
Y F + + +Q+ G + L R T H +A +L
Sbjct: 63 YHQAFARAELSHADQRRIGLPATQPLVRRTWLSVGGTLLTARLALRHGLACHLAGGTHHA 122
Query: 136 -PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLA------ 180
P + +F D+A + +V L RR + D+ AA+ A
Sbjct: 123 FPTYGSGFCIFNDVA------VACSVLLQEGAVRRLLVVDLDVHQGDGTAAIFAAEPRVF 176
Query: 181 -----------------DL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAG 222
DL I G+ Q Y + HLP +L Q +PDLV+Y+AG
Sbjct: 177 TLSAHGASNFPLRKQTSDLDIPLSDGMEDQE---YLVAIGSHLPDLLDQLQPDLVLYNAG 233
Query: 223 VDPHQHDELGKLNLTDHG 240
VDPH+ D LG+L L+ G
Sbjct: 234 VDPHRDDRLGRLCLSHAG 251
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFP +G+GFC+ ND+A+A L++ G VR++L+VDLDVHQ
Sbjct: 118 GTHHAFPTYGSGFCIFNDVAVACSVLLQEGAVRRLLVVDLDVHQ 161
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 396 GCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
C+ ++ ++ + L + GDGTA IF +P VFT S H N+P RKQ SDLD+
Sbjct: 139 ACSVLLQEGAVRRLLVVDLDVHQGDGTAAIFAAEPRVFTLSAHGASNFPLRKQTSDLDIP 198
Query: 456 IDVGTDD 462
+ G +D
Sbjct: 199 LSDGMED 205
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD VL+ + IPVATV GGGY + +L +R ++ RAA + GL
Sbjct: 251 GLINRDRLVLEACLRRRIPVATVIGGGY-GPLQELVERHCLVFRAAAEQARLHGL 304
>gi|402495659|ref|ZP_10842382.1| histone deacetylase [Aquimarina agarilytica ZC1]
Length = 300
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF + VFTFSMH +NYPFRK+ SDLD+A+ GTDD +V
Sbjct: 151 ILIVDLDVHQGNGTAEIFKHNSKVFTFSMHGEKNYPFRKEISDLDIALPNGTDDQSYLSV 210
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + G FCL+ND A+AA YL+ H + +K+LIVDLDVHQ
Sbjct: 117 GTHHAFSNRGEAFCLLNDQAVAAAYLLHHKLAKKILIVDLDVHQ 160
>gi|449018659|dbj|BAM82061.1| unknown deacetylase [Cyanidioschyzon merolae strain 10D]
Length = 369
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIR-HGIVRKVLIVDLDVHQ 547
THHAFPDHG GFC+ ND+A+AAR +R + VR++L++DLDVHQ
Sbjct: 165 GTHHAFPDHGEGFCVFNDIAIAARVALRDYAQVRRILVLDLDVHQ 209
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L + + Y LP HRFPM+K+ L D L+ P + I LVH+K
Sbjct: 48 LRVYFADVYAVELPAGHRFPMAKYELVRRKLEADSSFKGVPFLVSPLAELDDIL-LVHSK 106
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+YV +F GK ++ E + GF WS L R
Sbjct: 107 DYVDRFIKGKLSDIEVRRIGFPWSTALVQR 136
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A IF D VFT S H NYPFRKQ SDLD+ + TDD +
Sbjct: 200 ILVLDLDVHQGNGVAAIFQGDSRVFTCSFHGHGNYPFRKQKSDLDIEFEDNTDDTDYLQI 259
Query: 469 ALTWV 473
W+
Sbjct: 260 LEVWL 264
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ LP I+A+ PDLV Y AGVD D+LG+L LT G
Sbjct: 256 YLQILEVWLPRIMAKHDPDLVFYQAGVDALAEDKLGRLALTRAG 299
>gi|171058674|ref|YP_001791023.1| histone deacetylase superfamily protein [Leptothrix cholodnii SP-6]
gi|170776119|gb|ACB34258.1| histone deacetylase superfamily [Leptothrix cholodnii SP-6]
Length = 318
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 75/209 (35%), Gaps = 55/209 (26%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I I L + G+GTA IF DP V+T SMH +N+PFRK SD DV + G D
Sbjct: 153 IAVIDLDVHQGNGTASIFADDPMVYTLSMHGEKNFPFRKVASDHDVDLPDGCTD------ 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
G +L L D + R HHA G F
Sbjct: 207 ------------------GPYLQAL---DAALERLWQHHAESPPGLIF------------ 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
I D H+ R L L GL RD VL A G+PVA
Sbjct: 234 ----------YIAGADPHEGDR------LGRLKISAAGLAERDRRVLQAARQRGVPVAIS 277
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY I+ Q R A + +
Sbjct: 278 MGGGYGRTIEDTVAVQMQTWREALACWHQ 306
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+++ + LP HRFPM K+ L+RD V + + +L++ S+ LVH Y
Sbjct: 5 YSDHFVLPLPAGHRFPMHKYR-----LLRDAVAAELAAVRLVQAAAASDGELALVHEPAY 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
V +G+ + ++++ GF WS +A R R
Sbjct: 60 VDAVQHGRLSAQQEREIGFPWSPAMAERAR 89
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + W +++R+ + I L++ + THHA G+GFC+ ND+
Sbjct: 73 EREIGFPWSPAMAERARRSVGATIAAARCALAEGISGNLAGGTHHASAGGGSGFCVFNDV 132
Query: 523 ALAARYLI-----RHGIVRKVLIVDLDVHQ 547
A+AAR + RH ++ ++DLDVHQ
Sbjct: 133 AVAARLMQAEWHRRHRQFLRIAVIDLDVHQ 162
>gi|405355313|ref|ZP_11024539.1| Deacetylase [Chondromyces apiculatus DSM 436]
gi|397091655|gb|EJJ22457.1| Deacetylase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 279
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 430 PAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRTVALTWVTFLSQRSEKMRNNGI 488
PA T S C R R A+ GT +A R + W L QR I
Sbjct: 19 PAAITESTPCPREDLERVHTPRYLDALFHGTLTEAELRRLGFPWSPGLVQRFAAAVAGTI 78
Query: 489 FLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
L D S THH FPDHG GFC+ ND+A+A R L G +R+ ++VDLDVH
Sbjct: 79 DAGRAALRDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVAIRVLQAEGALRRAVVVDLDVH 138
Query: 547 QHTRSIPV 554
Q + V
Sbjct: 139 QGNGTAAV 146
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RA++++ L + G+GTA +F D AVFTFSMH N+PFRKQ S LDV + GT DA
Sbjct: 129 RAVVVD--LDVHQGNGTAAVFAGDDAVFTFSMHGENNFPFRKQPSHLDVGLPDGTGDA 184
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 61 LVRDKVIDKSKQLIEPQQISESIA------ELVHTKEYVHKFFNGKTTEKEQKVTGFEWS 114
L+R+ ++++ ++ P I+ES E VHT Y+ F+G TE E + GF WS
Sbjct: 6 LLREALLERG--VLSPAAITESTPCPREDLERVHTPRYLDALFHGTLTEAELRRLGFPWS 63
Query: 115 AGLASRVRT--------------DPVPTHVIAVY---LPFFLQRRPVFFDIAAVLADLIC 157
GL R D + ++ P + VF DIA +
Sbjct: 64 PGLVQRFAAAVAGTIDAGRAALRDGIGGNLSGGTHHGFPDHGEGFCVFNDIA------VA 117
Query: 158 IAVYLTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV----------- 194
I V RR V D+ AAV A M G N P
Sbjct: 118 IRVLQAEGALRRAVVVDLDVHQGNGTAAVFAGDDAVFTFSMHGENNFPFRKQPSHLDVGL 177
Query: 195 ------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L +LP +L + + + AGVDP D LG+L+LT G
Sbjct: 178 PDGTGDAEYLDALALYLPEVLDRAGACALFFQAGVDPLTEDALGRLSLTHAG 229
>gi|392540847|ref|ZP_10287984.1| histone deacetylase [Pseudoalteromonas piscicida JCM 20779]
Length = 301
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y P HRF MSKF++ + + D + + P+ + S E VH +
Sbjct: 6 LPLVYHANYSFNFDPKHRFVMSKFARLYQEV--DALGLIHNNVYSPEPGNPSPLESVHCE 63
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQR 141
+YV + + K + G WS L +R T P+ T H IA +L
Sbjct: 64 QYVWDLWRNQLDAKMMRHIGLPWSEQLMARTFTAPLGTLKTAELALKHGIACHLAGGTHH 123
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQRRPV----FFDI--------AAVL---------- 179
+D + + +A T L+ + FD+ AA+L
Sbjct: 124 --AHYDFGSGFCMVNDLAFTATHLLENNQITNALIFDLDVHQGDGTAAMLKHNPYVYTCS 181
Query: 180 -------------ADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225
+DL I VGI+ + Y + L +L PD+V+YDAGVD
Sbjct: 182 IHCEKNFPFRKHASDLDIGLEVGISD---THYLEIVAHTLESLLVDLNPDIVLYDAGVDV 238
Query: 226 HQHDELGKLNLT 237
Q D LGKL+++
Sbjct: 239 WQGDNLGKLDIS 250
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
ALI + L + GDGTA + +P V+T S+HC +N+PFRK SDLD+ ++VG D
Sbjct: 153 NALIFD--LDVHQGDGTAAMLKHNPYVYTCSIHCEKNFPFRKHASDLDIGLEVGISD 207
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A A +L+ + + LI DLDVHQ
Sbjct: 120 GTHHAHYDFGSGFCMVNDLAFTATHLLENNQITNALIFDLDVHQ 163
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
G+ RD VL G+PVATV GGGY D +LA+R I+ + A
Sbjct: 253 GIAKRDALVLTLCQKHGVPVATVIGGGYDKDHQRLAKRHAIVVQQAA 299
>gi|375148298|ref|YP_005010739.1| histone deacetylase [Niastella koreensis GR20-10]
gi|361062344|gb|AEW01336.1| Histone deacetylase [Niastella koreensis GR20-10]
Length = 307
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+GTA IF+ +P VFTFSMH NYPF K+ SDLD+A++ GT+D
Sbjct: 157 IIIIDLDVHQGNGTASIFEHEPRVFTFSMHGAHNYPFHKEKSDLDIALNDGTEDG 211
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND +AA YL++ + R+++I+DLDVHQ
Sbjct: 123 GTHHAFTDRGEGFCLLNDFGVAANYLLKKELARRIIIIDLDVHQ 166
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + Y LP HRFPM K+ L+ + I S L P + I H +
Sbjct: 8 LKIAYDPIYAHPLPEGHRFPMLKYELIPEQLLYEGTI-TSHNLFAPAACDDEIVLWTHDE 66
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
YV K + +EQ+ GF S L R
Sbjct: 67 AYVQKLQQQTLSAREQRHIGFPQSPQLTRR 96
>gi|431798624|ref|YP_007225528.1| deacetylase [Echinicola vietnamensis DSM 17526]
gi|430789389|gb|AGA79518.1| deacetylase, histone deacetylase/acetoin utilization protein
[Echinicola vietnamensis DSM 17526]
Length = 300
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A++A YL++ + ++VL+VDLDVHQ
Sbjct: 117 GTHHAFSDRGEGFCLLNDIAISANYLVQKKLAKQVLVVDLDVHQ 160
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 100/259 (38%), Gaps = 59/259 (22%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + KY LP HRFPM K+ L+ + I + L EP +SE H
Sbjct: 2 LKIAWSPKYAHPLPAGHRFPMEKYELLPEQLLYEGTI-AAHNLFEPNALSEEWIVGPHKA 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVI--AVYLPFFLQRRPVFFDI 148
Y+ K T+ E + TGF SA L R H++ +V F + + +I
Sbjct: 61 GYLQKLTELSLTKSEIRKTGFPLSAALVER------EIHIMDGSVQGCLFALKHGIAMNI 114
Query: 149 AA----VLAD-------LICIAVYLTFFLQRR-------------------PVFFDIAAV 178
A +D L IA+ + +Q++ +F D AV
Sbjct: 115 AGGTHHAFSDRGEGFCLLNDIAISANYLVQKKLAKQVLVVDLDVHQGNGTAEIFKDNPAV 174
Query: 179 LADLIHFMVGINTQPVSG-----------------YQATLKEHLPGILAQFKPDLVIYDA 221
+H G P+ Y LKEHLP +L Q +PD +IY
Sbjct: 175 FTFSMH---GAANYPLHKETSDLDVPLPDKVGDEFYIRKLKEHLPPLLDQVEPDFIIYQC 231
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVD D+LG+L ++ G
Sbjct: 232 GVDVLSTDKLGRLGVSIEG 250
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
++ + L + G+GTA IF +PAVFTFSMH NYP K+ SDLDV +
Sbjct: 151 VLVVDLDVHQGNGTAEIFKDNPAVFTFSMHGAANYPLHKETSDLDVPL 198
>gi|337270974|ref|YP_004615029.1| Histone deacetylase [Mesorhizobium opportunistum WSM2075]
gi|336031284|gb|AEH90935.1| Histone deacetylase [Mesorhizobium opportunistum WSM2075]
Length = 298
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 75/204 (36%), Gaps = 58/204 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + GDGTA I +P FTFSMH RNYP RK SDL DV D
Sbjct: 150 ILVIDLDVHQGDGTADILGDEPRAFTFSMHGDRNYPVRKIASDL----DVALPDGTGDAA 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
L + + MR+ I + AG
Sbjct: 206 YLERLAAILPELSAMRHWDIVFY---------------------NAG------------- 231
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+DVH R L L+ GL RD V+ + GIPV V
Sbjct: 232 --------------VDVHAQDR------LGRLALSDNGLRSRDEMVIGHFRANGIPVCGV 271
Query: 589 TGGGYCADIDQLAQRQTIIHRAAT 612
GGGY D+ LA R I+ AA+
Sbjct: 272 VGGGYSTDVPALAARHAILFEAAS 295
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC ND+A+AA L+ G +L++DLDVHQ
Sbjct: 116 GSHHARRAQGAGFCTFNDVAVAALMLLAEGAAHNILVIDLDVHQ 159
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L LP + A D+V Y+AGVD H D LG+L L+D+G
Sbjct: 204 AAYLERLAAILPELSAMRHWDIVFYNAGVDVHAQDRLGRLALSDNG 249
>gi|429748657|ref|ZP_19281828.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
332 str. F0381]
gi|429170214|gb|EKY11918.1| histone deacetylase family protein [Capnocytophaga sp. oral taxon
332 str. F0381]
Length = 296
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFC++ND A+AA YL+ H V+++LI+DLDVHQ
Sbjct: 117 GTHHAFSDRGEGFCMLNDQAVAAGYLLAHTAVQRILIIDLDVHQ 160
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 398 TSGMKSSHRAL--IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
+G +H A+ I+ I L + G+GTA IF DP VFTFSMH NYPF+K+ S LD+
Sbjct: 138 AAGYLLAHTAVQRILIIDLDVHQGNGTAQIFANDPRVFTFSMHAQHNYPFQKEQSSLDIP 197
Query: 456 IDVGTDD 462
+ GT D
Sbjct: 198 LPNGTTD 204
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 103/246 (41%), Gaps = 48/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P NHRFPM K++ L+ + I + PQ+ S LVH +YVH+F +
Sbjct: 9 YNHPVPDNHRFPMLKYALLPQQLLHEG-IAQPTDFHTPQKASPQSLCLVHHPDYVHRFIH 67
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA-------- 150
+ T KE GF + L R T T A++ LQ R V F+IA
Sbjct: 68 LQLTHKEALPIGFVQNEQLVERELTLVQGTIDGALWA---LQHRQVAFNIAGGTHHAFSD 124
Query: 151 ------VLADLICIAVYLTFFLQ-RRPVFFDI--------AAVLA-DLIHFMVGINTQ-- 192
+L D A YL +R + D+ A + A D F ++ Q
Sbjct: 125 RGEGFCMLNDQAVAAGYLLAHTAVQRILIIDLDVHQGNGTAQIFANDPRVFTFSMHAQHN 184
Query: 193 -PVSGYQAT-----------------LKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
P Q++ L++ LP ++AQ +P V Y +GVD D+LGKL
Sbjct: 185 YPFQKEQSSLDIPLPNGTTDEVYLRILQDTLPQLIAQHQPQFVFYQSGVDVLATDKLGKL 244
Query: 235 NLTDHG 240
+L+ G
Sbjct: 245 SLSVEG 250
>gi|384083397|ref|ZP_09994572.1| histone deacetylase superfamily protein [gamma proteobacterium
HIMB30]
Length = 308
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 97/254 (38%), Gaps = 51/254 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPI+ Y P +HRFPM+KF + V V + +L+ P + H
Sbjct: 4 LPIVWDAGYSPVFPDSHRFPMAKF-RLLKEWVDHHV--PTTELVTPIPCPTDVLMETHDP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR--------------VRTDPVPTHVIAVYLP 136
+YV F +G K + G WS GL R +T + +H+
Sbjct: 61 DYVSGFQSGSLNAKAIREIGLPWSEGLRDRTNLALGGTMRTCELAKTYGLASHLAGGTHH 120
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTF-FLQRRPVFFD--------IAAVLA-DLIHFM 186
R F + DL A YL L R + FD A++LA D F
Sbjct: 121 AHYDRGSGF----CIYNDLAVSARYLVNQGLASRVLIFDCDVHQGDGTASILAHDSQTFT 176
Query: 187 VGINTQ---PVSGYQATLK-----------------EHLPGILAQFKPDLVIYDAGVDPH 226
I+ + PV ++ L E L ++ + PD VIYDAG D H
Sbjct: 177 CSIHAEKNFPVRKVESDLDVNCPDGMTDDAYLSLVFETLESVITSWHPDFVIYDAGSDVH 236
Query: 227 QHDELGKLNLTDHG 240
D LG+L++T G
Sbjct: 237 IDDALGRLSITTDG 250
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC+ ND+A++ARYL+ G+ +VLI D DVHQ
Sbjct: 117 GTHHAHYDRGSGFCIYNDLAVSARYLVNQGLASRVLIFDCDVHQ 160
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 83/213 (38%), Gaps = 62/213 (29%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDDAG 464
R LI + + + GDGTA I D FT S+H +N+P RK SDLDV G TDDA
Sbjct: 150 RVLIFDCDV--HQGDGTASILAHDSQTFTCSIHAEKNFPVRKVESDLDVNCPDGMTDDA- 206
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+LS E + E S H F + AG + D AL
Sbjct: 207 ----------YLSLVFETL---------------ESVITSWHPDFVIYDAGSDVHIDDAL 241
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
+ G+ R RDY V+ +AG+P
Sbjct: 242 GRLSITTDGLYR---------------------------------RDYGVISRIRNAGLP 268
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
ATV GGGY D ++A R ++ AA ++ E
Sbjct: 269 CATVIGGGYDNDRARVAARHGVVISAAARIFAE 301
>gi|228472500|ref|ZP_04057260.1| histone deacetylase family protein [Capnocytophaga gingivalis ATCC
33624]
gi|228275913|gb|EEK14669.1| histone deacetylase family protein [Capnocytophaga gingivalis ATCC
33624]
Length = 287
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D G GFC++ND A+AA YL++ G +++LIVDLDVHQ
Sbjct: 104 GTHHAYSDRGEGFCMLNDQAVAAAYLLKTGRAKRILIVDLDVHQ 147
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+K+ I+ + L + G+GTA IF VFTFSMH NYPF K+ SD D+ + T
Sbjct: 130 LKTGRAKRILIVDLDVHQGNGTAEIFAHREEVFTFSMHARDNYPFVKEQSDKDIELPKQT 189
Query: 461 DD 462
D
Sbjct: 190 TD 191
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 92/244 (37%), Gaps = 53/244 (21%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
+P NHRFPM K++ L+ + V ++ + P ++S + A L H + YV F
Sbjct: 1 MPENHRFPMEKYALLHEQLLWEGVAEE-EDFFAPAKVSIADASLAHDRGYVEAFVGLHLP 59
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA------------ 150
E+ + GF S L +R T T A Y + F+IA
Sbjct: 60 ERTRIRIGFVQSPQLVARELTLVQGTIDGAHY----ALEEGIAFNIAGGTHHAYSDRGEG 115
Query: 151 --VLADLICIAVYL-----------------------TFFLQRRPVF-FDIAAVLADLIH 184
+L D A YL F R VF F + A D
Sbjct: 116 FCMLNDQAVAAAYLLKTGRAKRILIVDLDVHQGNGTAEIFAHREEVFTFSMHA--RDNYP 173
Query: 185 FMVGINTQPVS-GYQATLKEH-------LPGILAQFKPDLVIYDAGVDPHQHDELGKLNL 236
F+ + + + Q T KE+ LP + Q +PD V Y +GVD D G LNL
Sbjct: 174 FVKEQSDKDIELPKQTTDKEYLSLLEATLPVLFEQHRPDFVFYQSGVDVLGSDRFGLLNL 233
Query: 237 TDHG 240
+ G
Sbjct: 234 SIEG 237
>gi|421523855|ref|ZP_15970482.1| histone deacetylase superfamily protein, partial [Pseudomonas
putida LS46]
gi|402752100|gb|EJX12607.1| histone deacetylase superfamily protein, partial [Pseudomonas
putida LS46]
Length = 182
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV + + L+ P I L H +
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLHDHLVGSGLT-TDQALLRPDICPNDILALAHDR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
Y+ ++ NG+ + ++Q+ G WS LA R
Sbjct: 62 SYIERYMNGELSREDQRRLGLPWSEALARRT 92
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 137 AVISRYLLEAGRVHRVLIFDCDVHQ 161
>gi|392546013|ref|ZP_10293150.1| histone deacetylase superfamily protein [Pseudoalteromonas rubra
ATCC 29570]
Length = 308
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCLM 519
D + + W L +R+ + L LSD S HHAF D AGFC+
Sbjct: 71 DGAVKRMGFPWSEQLVERTLCSVGAALEAVQLALSDGFAANLSGGYHHAFSDRAAGFCIF 130
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
ND+A+AARYLI+ G V VL++D DVHQ S +
Sbjct: 131 NDLAIAARYLIQTGQVDTVLLLDCDVHQGDGSAEI 165
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 93/252 (36%), Gaps = 54/252 (21%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQI-SESIAELVHTKEYV 93
H + LPP HRFP+ K+ + L++ + L +P + S + L H EYV
Sbjct: 5 HPSYSALPLPPKHRFPIDKYRLLYQQLLQTPC---ASWLTQPNLVASPAHITLCHEPEYV 61
Query: 94 HKFFNGKTTEKEQKVTGFEWSAGLASR--------------VRTDPVPTHVIAVYLPFFL 139
F NG + K GF WS L R +D ++ Y F
Sbjct: 62 TAFLNGTLPDGAVKRMGFPWSEQLVERTLCSVGAALEAVQLALSDGFAANLSGGYHHAFS 121
Query: 140 QRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFF---DI------AAVLADLIH------ 184
R F + DL A YL Q V D+ A +LAD
Sbjct: 122 DRAAGF----CIFNDLAIAARYLIQTGQVDTVLLLDCDVHQGDGSAEILADDTQIITCSL 177
Query: 185 ----------------FMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
F + ++ + Y ATL + L +PD+++Y+AG D +
Sbjct: 178 HCEQNFPKLKRQSDYDFALPVDCSDAT-YLATLHDALSLCTRLHQPDIILYNAGADIFRL 236
Query: 229 DELGKLNLTDHG 240
DELG L ++ G
Sbjct: 237 DELGHLAVSLDG 248
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV---ALTWV 473
+ GDG+A I D + T S+HC +N+P K+ SD D A+ V DA AL+
Sbjct: 157 HQGDGSAEILADDTQIITCSLHCEQNFPKLKRQSDYDFALPVDCSDATYLATLHDALSLC 216
Query: 474 TFLSQRSEKMRNNGIFLFLL 493
T L Q + N G +F L
Sbjct: 217 TRLHQPDIILYNAGADIFRL 236
>gi|340788226|ref|YP_004753691.1| Deacetylase [Collimonas fungivorans Ter331]
gi|340553493|gb|AEK62868.1| Deacetylase [Collimonas fungivorans Ter331]
Length = 311
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 455 AIDVGT-DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP---EIN-RFSTHHAF 509
A+ GT ++ + + W + +RS + I L+DP +N THHAF
Sbjct: 62 AVSAGTLPESVQKAIGFPWTPQMVERSRRSAGATIAACRAALTDPGRIAVNLAGGTHHAF 121
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
D GAGFC+ ND A+AAR + V++V IVDLDVHQ
Sbjct: 122 ADQGAGFCVFNDAAIAARLMQAERRVQRVAIVDLDVHQ 159
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 71/186 (38%), Gaps = 58/186 (31%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
+ L + G+GTA I D +VFT S+H RNYPF K+ SDLDVA+ GT D
Sbjct: 153 VDLDVHQGNGTASILANDDSVFTLSLHGERNYPFDKERSDLDVALADGTGDQ-------A 205
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+++ L M + RFS LI
Sbjct: 206 YLSALQDALAAM----------------LERFSPQ----------------------LI- 226
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
+ + D H+ R L L GL RD +L+TA IPVA G
Sbjct: 227 ------IFLAGADPHEGDR------LGRLKLSFDGLARRDAMLLETAGRRAIPVAIAMAG 274
Query: 592 GYCADI 597
GY +I
Sbjct: 275 GYGKNI 280
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + L++ L +L +F P L+I+ AG DPH+ D LG+L L+ G
Sbjct: 206 YLSALQDALAAMLERFSPQLIIFLAGADPHEGDRLGRLKLSFDG 249
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRD-KVIDKSKQLIEPQQISESIAELVHT 89
+ +++ + LP HRFPM K+ +R ID E S+ + L H
Sbjct: 1 MKAFYSDHFVLPLPAGHRFPMQKYRLIHEAALRTISDID----FHEAPTTSDGVLALAHH 56
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
Y+ G E QK GF W+ + R R
Sbjct: 57 PHYISAVSAGTLPESVQKAIGFPWTPQMVERSR 89
>gi|55980021|ref|YP_143318.1| deacetylase [Thermus thermophilus HB8]
gi|55771434|dbj|BAD69875.1| putative deacetylase [Thermus thermophilus HB8]
Length = 294
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K ++ + L + G+GTAF F +DP+VFT S+H RNYP +K+ SDLDV + GT
Sbjct: 139 KEGFSGRVLVVDLDAHQGNGTAFFFREDPSVFTLSLHGERNYPLKKEKSDLDVGLPDGTG 198
Query: 462 D 462
D
Sbjct: 199 D 199
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYL-IRHGIVRKVLIVDLDVHQ 547
THHAFP G+ L ND+A+A +L + G +VL+VDLD HQ
Sbjct: 111 GTHHAFPGRAEGYSLFNDVAVAIFWLRAKEGFSGRVLVVDLDAHQ 155
>gi|408490735|ref|YP_006867104.1| histone deactylase class IV [Psychroflexus torquis ATCC 700755]
gi|408468010|gb|AFU68354.1| histone deactylase class IV [Psychroflexus torquis ATCC 700755]
Length = 302
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FC++ND A+AA YL+++ + +++L+VDLDVHQ
Sbjct: 119 GTHHAYSDHGEAFCMLNDQAIAAHYLLQNKLAKQILVVDLDVHQ 162
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF KD VFTFSMH NYPF+K+ SDLD+ ++ DD
Sbjct: 153 ILVVDLDVHQGNGTAEIFQKDDRVFTFSMHGKSNYPFKKEISDLDIPMEDNCDD 206
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQ--QISESIAELVHTKEYVHKF 96
Y+ LP HRFPM K+ L+ + + + EPQ +E+ + VHT +Y+ +
Sbjct: 10 YKHPLPEGHRFPMDKYDLLPKQLLHEGTCE-PENFFEPQINLDNETYIQSVHTSDYLEQL 68
Query: 97 FNGKTTEKEQKVTGFEWSAGLASRVR 122
+N + + GF SA L R R
Sbjct: 69 YNISIEPRVARKIGFPLSAELVKRER 94
>gi|392398578|ref|YP_006435179.1| deacetylase [Flexibacter litoralis DSM 6794]
gi|390529656|gb|AFM05386.1| deacetylase, histone deacetylase/acetoin utilization protein
[Flexibacter litoralis DSM 6794]
Length = 300
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF +HG GFCL+ND+ALA+ +LI + K+LI+DLDVHQ
Sbjct: 117 GTHHAFTEHGEGFCLLNDIALASYHLIDEHNINKILIIDLDVHQ 160
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF + VFTFSMH +NYP +K+ SDLD+ + GTDD
Sbjct: 151 ILIIDLDVHQGNGTAEIFQNEKRVFTFSMHGEKNYPHKKENSDLDIELKDGTDD 204
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +LP HRFPM K+ L+ + K + EP ISE VHT EY +K
Sbjct: 10 YAHSLPQTHRFPMLKYELLPEQLIYEGTATK-ENFFEPIPISEKKIVRVHTSEYWNKLKT 68
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
T+KE + TGF S L R
Sbjct: 69 LSLTKKEIRKTGFPLSQKLVDR 90
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y LKE LP ++ + KP + + AGVD D+LG+L +T G
Sbjct: 207 YLKVLKETLPKLIQEQKPQFIFFQAGVDVLATDKLGRLGMTLQG 250
>gi|402831312|ref|ZP_10880001.1| histone deacetylase family protein [Capnocytophaga sp. CM59]
gi|402282578|gb|EJU31116.1| histone deacetylase family protein [Capnocytophaga sp. CM59]
Length = 300
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTV 559
THHA+ D G GFC++ND A+AA YL+ G ++VLI+DLDVHQ + + P++
Sbjct: 116 GTHHAYSDRGEGFCMLNDQAVAAAYLLDKGKAQRVLIIDLDVHQGNGTAEIFAQKPAVFT 175
Query: 560 LSSCVPGLY--MRDYYVLDTAISAG 582
S G Y +++ +D A+ G
Sbjct: 176 FSMHAQGNYPFVKEQSDMDIALPDG 200
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI I L + G+GTA IF + PAVFTFSMH NYPF K+ SD+D+A+ GT D
Sbjct: 147 AQRVLI--IDLDVHQGNGTAEIFAQKPAVFTFSMHAQGNYPFVKEQSDMDIALPDGTGD 203
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 90/246 (36%), Gaps = 49/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P NHRFPM K++ L+ + + ++ P++++ S L HT YV F
Sbjct: 9 YTHPVPENHRFPMEKYALLHEQLLWEGIATEAD-FFAPEKVALSSLYLAHTPAYVQDFVG 67
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA-------- 150
E+ + GF S L R T T A+Y V F+IA
Sbjct: 68 QTLEERTRIRIGFVQSQQLIDRELTLVQGTIEGALY----ALEGQVAFNIAGGTHHAYSD 123
Query: 151 ------VLADLICIAVYL----------------------TFFLQRRPVFFDIAAVLADL 182
+L D A YL ++P F +
Sbjct: 124 RGEGFCMLNDQAVAAAYLLDKGKAQRVLIIDLDVHQGNGTAEIFAQKPAVFTFSMHAQGN 183
Query: 183 IHFMVGINTQPVS--------GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
F+ + ++ Y L+E LP + + +PD V Y +GVD + D+ GKL
Sbjct: 184 YPFVKEQSDMDIALPDGTGDDAYITQLREVLPELFEKHQPDFVFYQSGVDVLESDKFGKL 243
Query: 235 NLTDHG 240
L+ G
Sbjct: 244 RLSLEG 249
>gi|452751368|ref|ZP_21951114.1| Histone deacetylase family protein [alpha proteobacterium JLT2015]
gi|451961518|gb|EMD83928.1| Histone deacetylase family protein [alpha proteobacterium JLT2015]
Length = 328
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 78/199 (39%), Gaps = 60/199 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
IM I L + GDGTA + P +FT+S H RN+P RK S LDV + G D
Sbjct: 153 IMIIDLDVHQGDGTAVMLAGRPEIFTYSAHAERNFPVRKARSTLDVPLPDGLGD------ 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
G L R P F+ PD
Sbjct: 207 -----------------TGYLDMLDRTLAPAFQEFA-----PD---------------LV 229
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L + G+ D ++ R L L+ PGL RD YV D +AG+P+A+V
Sbjct: 230 LYQAGV---------DPYEGDR------LGRLALSDPGLIARDVYVRDLCAAAGVPLASV 274
Query: 589 TGGGYCADID--QLAQRQT 605
GGGY AD +LA+R
Sbjct: 275 LGGGYAADSGRMELARRHA 293
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA P GAG+C+ ND+A+AA LI G+ +++I+DLDVHQ
Sbjct: 120 SHHALPATGAGYCVFNDLAVAANRLIAEGLAGRIMIIDLDVHQ 162
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 88/248 (35%), Gaps = 43/248 (17%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
++H Y LP FPM+K++ L D D +++EP + VH +Y
Sbjct: 8 LVHHPDYVAPLPAGSSFPMNKYALLLTAL-DDYGADY--EVVEPLPMPPVWIAAVHEPDY 64
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY-----------------L 135
V + Q+ GF + +A R T++ A L
Sbjct: 65 VEAVLTQTVSRDVQRRIGFPVTERVARRSSLSTGGTYLAAKIALAGGFAANGAGGSHHAL 124
Query: 136 PFFLQRRPVFFDIAAVLADLICIAVY---------------LTFFLQRRPVFFDIAAVLA 180
P VF D+A LI + L RP F +A
Sbjct: 125 PATGAGYCVFNDLAVAANRLIAEGLAGRIMIIDLDVHQGDGTAVMLAGRPEIFTYSAHAE 184
Query: 181 DLIHFMVGINTQPV--------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELG 232
+T V +GY L L +F PDLV+Y AGVDP++ D LG
Sbjct: 185 RNFPVRKARSTLDVPLPDGLGDTGYLDMLDRTLAPAFQEFAPDLVLYQAGVDPYEGDRLG 244
Query: 233 KLNLTDHG 240
+L L+D G
Sbjct: 245 RLALSDPG 252
>gi|406663291|ref|ZP_11071352.1| Acetoin utilization protein AcuC [Cecembia lonarensis LW9]
gi|405552606|gb|EKB47991.1| Acetoin utilization protein AcuC [Cecembia lonarensis LW9]
Length = 300
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+GTA IF ++ VFTFSMH NYP K+ SDLD+ + G DDA
Sbjct: 151 ILVVDLDVHQGNGTAEIFRQESKVFTFSMHGAANYPMHKEKSDLDIGLPDGIDDA----- 205
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
T++ L E + + + F++ S ++ LA+
Sbjct: 206 --TYLDILDTNLEPLMDQVVPDFIIFQSGVDV-----------------------LASDK 240
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
L R G+ + G RD VL++A +P+
Sbjct: 241 LGRLGL----------------------------SIQGCKERDKRVLESAKRHRVPIMCC 272
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY I Q+ + +R A +Y
Sbjct: 273 MGGGYSQKISQIIEAHANTYRLAQDIY 299
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+ A YL+ + ++L+VDLDVHQ
Sbjct: 117 GTHHAFSDRGEGFCLLNDIAITANYLLEKKLAGQILVVDLDVHQ 160
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 60/272 (22%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I ++ KY LP HRFPM K++ L+ + ++ S EP+ + H
Sbjct: 2 LKIAYSEKYCHPLPEGHRFPMEKYNLLPEQLMYEGTVNSSN-FFEPEALDREWILNTHHA 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVI--AVYLPFFLQRRPVFFDI 148
EY K N ++ E + TGF S L R H++ +V F + V +I
Sbjct: 61 EYFQKLENLSLSKSEIRRTGFPLSKALVER------EIHIMHGSVQAALFALQYGVAMNI 114
Query: 149 AA--------------VLADLICIAVYL-----------------------TFFLQRRPV 171
A +L D+ A YL F Q V
Sbjct: 115 AGGTHHAFSDRGEGFCLLNDIAITANYLLEKKLAGQILVVDLDVHQGNGTAEIFRQESKV 174
Query: 172 F---------FDIAAVLADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDA 221
F + + +DL I GI+ + Y L +L ++ Q PD +I+ +
Sbjct: 175 FTFSMHGAANYPMHKEKSDLDIGLPDGIDD---ATYLDILDTNLEPLMDQVVPDFIIFQS 231
Query: 222 GVDPHQHDELGKLNLTDHGECISSSARISSEA 253
GVD D+LG+L L+ G C R+ A
Sbjct: 232 GVDVLASDKLGRLGLSIQG-CKERDKRVLESA 262
>gi|374364611|ref|ZP_09622713.1| histone deacetylase family deacetylase [Cupriavidus basilensis
OR16]
gi|373103908|gb|EHP44927.1| histone deacetylase family deacetylase [Cupriavidus basilensis
OR16]
Length = 322
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGF 516
D + R + W + +RS R+ G + R++ E +N THHA+ D G GF
Sbjct: 69 DPSRQREIGFPWSDAMVERSR--RSAGATIEACRIALREGISVNLAGGTHHAYADKGGGF 126
Query: 517 CLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
C+ ND A+AAR L R G V +V +VDLDVHQ
Sbjct: 127 CVFNDAAVAARQLRRDGRVERVAVVDLDVHQ 157
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I DP VFT S+H +NYPFRK+ SDLDV + G DD
Sbjct: 151 VDLDVHQGNGTASILRDDPFVFTLSLHGEKNYPFRKEASDLDVGLPDGCDD 201
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVH 94
+ + + LP HRFPM K+S + RD L+E + + L HT EYV
Sbjct: 5 YADHFVLPLPEGHRFPMRKYSMLRTAVERDV---PGLSLVEAPRAGDDALLLAHTPEYVA 61
Query: 95 KFFNGKTTEKEQKVTGFEWSAGLASRVR 122
G+ Q+ GF WS + R R
Sbjct: 62 SVSRGELDPSRQREIGFPWSDAMVERSR 89
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
Y L+ L + A+F PDL+IY AG DPH+ D LG+L LT
Sbjct: 204 YAQALQGALDMLFARFSPDLIIYLAGADPHEGDRLGRLKLT 244
>gi|338213016|ref|YP_004657071.1| histone deacetylase superfamily protein [Runella slithyformis DSM
19594]
gi|336306837|gb|AEI49939.1| histone deacetylase superfamily [Runella slithyformis DSM 19594]
Length = 305
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D G GFCL+ND+A+AA YL+++ V K+L++DLDVHQ
Sbjct: 122 GTHHAYADRGEGFCLLNDVAIAANYLLKNKSVSKILVIDLDVHQ 165
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+K+ + I+ I L + G+GTA IF +P VFTFSMH NYP K+ SDLD+A+ GT
Sbjct: 148 LKNKSVSKILVIDLDVHQGNGTAVIFQNEPRVFTFSMHGKDNYPLHKEVSDLDIALPTGT 207
Query: 461 DD 462
D
Sbjct: 208 QD 209
>gi|390953897|ref|YP_006417655.1| deacetylase [Aequorivita sublithincola DSM 14238]
gi|390419883|gb|AFL80640.1| deacetylase, histone deacetylase/acetoin utilization protein
[Aequorivita sublithincola DSM 14238]
Length = 300
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G GFC++ND A+A++YL +G+ K+LIVDLDVHQ
Sbjct: 117 GTHHAYTNRGEGFCMLNDQAIASKYLQNNGLANKILIVDLDVHQ 160
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF D +VFTFSMH NYPF K+ SDLD+AI G+ D
Sbjct: 151 ILIVDLDVHQGNGTAEIFLNDDSVFTFSMHGAGNYPFNKEKSDLDIAIPDGSGD 204
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y LKE LP ++ + KP + Y AGVD + D+LG+LN T G
Sbjct: 207 YLQKLKETLPKLVEEQKPGFIFYLAGVDILETDKLGRLNCTIEG 250
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + + Y LP HRFPM K+ L+ + ++ E + SE VHTK
Sbjct: 2 LKIAYHSLYVYPLPEKHRFPMEKYELLPKQLLHEGTC-VAENFFESKMPSEEDILAVHTK 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
EY N + + GF S L R
Sbjct: 61 EYFESLVNLTIDSRAARKIGFPLSEALIDR 90
>gi|295136397|ref|YP_003587073.1| histone deacetylase [Zunongwangia profunda SM-A87]
gi|294984412|gb|ADF54877.1| histone deacetylase family protein [Zunongwangia profunda SM-A87]
Length = 279
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHG FCL++D A+AARYL + + K+LI+DLDVHQ
Sbjct: 96 GTHHAYSDHGEAFCLLHDQAIAARYLQKKKLAEKILIIDLDVHQ 139
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF D +VFTFSMH NYPFRK+ SDLD+ + G+ D
Sbjct: 130 ILIIDLDVHQGNGTAEIFQNDNSVFTFSMHGKGNYPFRKEISDLDIEVPDGSKD 183
>gi|409202838|ref|ZP_11231041.1| histone deacetylase [Pseudoalteromonas flavipulchra JG1]
Length = 301
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 103/251 (41%), Gaps = 48/251 (19%)
Query: 30 HLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+LP+++ Y P HRF MSKF++ + + ++I + P+ S E VH
Sbjct: 5 NLPLVYHANYSFNFDPKHRFVMSKFARLYQEVDALRLI--HNNVYSPEPGDPSPLESVHC 62
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQ 140
++Y+ + + K + G WS L +R T P+ T H IA +L
Sbjct: 63 EQYIWDLWRNQLDAKMMRRIGLPWSEQLMARTFTAPLGTLKTAELALKHGIACHLAGGTH 122
Query: 141 RRPVFFDIA-AVLADLICIAVYLTFFLQ-RRPVFFDI--------AAVL----------- 179
F ++ DL A +L Q + FD+ AA+L
Sbjct: 123 HAHYDFGSGFCMVNDLAFTATHLLDNNQITNALIFDLDVHQGDGTAAMLKHNPYVYTCSI 182
Query: 180 ------------ADL-IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
+DL I +GI+ + Y + L +L PD+V+YDAGVD
Sbjct: 183 HCEKNFPFRKHASDLDIGLEIGISD---THYLEIVAHTLESLLIDLNPDIVLYDAGVDVW 239
Query: 227 QHDELGKLNLT 237
Q D LGKL+++
Sbjct: 240 QGDNLGKLDIS 250
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
ALI + L + GDGTA + +P V+T S+HC +N+PFRK SDLD+ +++G D
Sbjct: 153 NALIFD--LDVHQGDGTAAMLKHNPYVYTCSIHCEKNFPFRKHASDLDIGLEIGISD 207
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC++ND+A A +L+ + + LI DLDVHQ
Sbjct: 120 GTHHAHYDFGSGFCMVNDLAFTATHLLDNNQITNALIFDLDVHQ 163
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
G+ RD VL G+PVATV GGGY D +LA+R I+ + A
Sbjct: 253 GIAKRDALVLTLCQKHGVPVATVIGGGYDKDHQRLAKRHAIVVQQAA 299
>gi|17546325|ref|NP_519727.1| hypothetical protein RSc1606 [Ralstonia solanacearum GMI1000]
gi|17428622|emb|CAD15308.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
Length = 323
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 97/258 (37%), Gaps = 63/258 (24%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R++ + + L+ E + + L H +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERALAEVPGLVMHEAPRAGDDALLLAHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFFLQRRP 143
V G+ Q+ GF WS + R R T IAV L
Sbjct: 62 VSAVGAGRLDPARQREIGFPWSPEMVERSRRSAGATMAACEAAMADGIAVNLAGGTHH-- 119
Query: 144 VFFDIAAVLADLICI---AVYLTFFLQRRP-----------VFFDI------AAVLADLI 183
+ D C+ A + ++QRRP V D+ A++L D
Sbjct: 120 AYADKGGGF----CVFNDAAIASRWMQRRPGRTPEHFPVAIVDLDVHQGNGTASILRDDA 175
Query: 184 HFMV----GINTQPVSGYQATLKEHLPG-----------------ILAQFKPDLVIYDAG 222
G P + L LP + A+F P L+IY AG
Sbjct: 176 SVFTLSEHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDTLAARFAPRLIIYLAG 235
Query: 223 VDPHQHDELGKLNLTDHG 240
DPH+ D LG+L LT G
Sbjct: 236 ADPHEGDRLGRLRLTMDG 253
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S H +NYPFRK+ SDLDV + G DA
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSEHGEKNYPFRKEASDLDVGLPDGCGDA 208
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSPEMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+A+R++ R G + V IVDLDVHQ
Sbjct: 131 FNDAAIASRWMQRRPGRTPEHFPVAIVDLDVHQ 163
>gi|406706584|ref|YP_006756937.1| histone deacetylase family protein [alpha proteobacterium HIMB5]
gi|406652360|gb|AFS47760.1| histone deacetylase family protein [alpha proteobacterium HIMB5]
Length = 297
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA+YLI G+ K+LIVDLDVHQ
Sbjct: 116 GSHHANFDGGAGYCVFNDVAVAAKYLIERGLANKILIVDLDVHQ 159
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 59/204 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A IF D VFTFSMH NYP +K S+ DV ++ T+D
Sbjct: 150 ILIVDLDVHQGNGNADIFKDDNHVFTFSMHSKTNYPAKKSLSNYDVELEDNTEDK----- 204
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
I+L L+ E+N++ F
Sbjct: 205 -------------------IYLDKLKQCLQELNQYFFDFVF------------------- 226
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
I +D+H + R L L G+ RD V++ S IP+ V
Sbjct: 227 ----------YIAGVDIHYNDR------LGKLKISDEGVRTRDQIVIENFFSQRIPLCGV 270
Query: 589 TGGGYCADIDQLAQRQTIIHRAAT 612
GGGY + ++L + + +H +
Sbjct: 271 LGGGYNKNFEKLVELHSYLHETCS 294
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 42/249 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y + +H+FP++KFS+ YL K++ K+ I P S H+
Sbjct: 3 LPVVNHKDYFAKIGDDHKFPINKFSELAKYLKEKKIV---KEFINPSPCSIETLSKAHSL 59
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR---VRTDPVPTHVIAVYLPFFLQ----RRP 143
+Y++ N + K GF + R V + +A+
Sbjct: 60 DYINNIKNKTLGKDGVKKIGFPLVDSVVKRSFIATGGTVLSAKLAIKSGISCNTAGGSHH 119
Query: 144 VFFDIAAVLADLICIAVYLTFFLQR----RPVFFDI--------AAVLADLIH-FMVGIN 190
FD A +AV + ++R + + D+ A + D H F ++
Sbjct: 120 ANFDGGAGYCVFNDVAVAAKYLIERGLANKILIVDLDVHQGNGNADIFKDDNHVFTFSMH 179
Query: 191 T-------QPVSGYQATLKEHLPGIL------------AQFKPDLVIYDAGVDPHQHDEL 231
+ + +S Y L+++ + Q+ D V Y AGVD H +D L
Sbjct: 180 SKTNYPAKKSLSNYDVELEDNTEDKIYLDKLKQCLQELNQYFFDFVFYIAGVDIHYNDRL 239
Query: 232 GKLNLTDHG 240
GKL ++D G
Sbjct: 240 GKLKISDEG 248
>gi|404448059|ref|ZP_11013053.1| deacetylase [Indibacter alkaliphilus LW1]
gi|403766645|gb|EJZ27517.1| deacetylase [Indibacter alkaliphilus LW1]
Length = 300
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+ A YL+ + + K+L+VDLDVHQ
Sbjct: 117 GTHHAFTDRGEGFCLLNDIAITANYLLENDLSHKILVVDLDVHQ 160
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
SH+ L+++ L + G+GTA IF D VFTFSMH NYP K+ SDLDV + +D
Sbjct: 148 SHKILVVD--LDVHQGNGTAEIFQNDNRVFTFSMHGASNYPMHKEKSDLDVGLPDKIEDK 205
Query: 464 GNRTVALTWVTFLSQRSE 481
+ + L Q+ E
Sbjct: 206 AYLKILDVHLKSLLQKVE 223
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 53/256 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + KY LP HRFPM K++ L+ + + K + P + E H +
Sbjct: 2 LKIAWSPKYCHPLPKGHRFPMDKYNLLPEQLLYEGTV-KDENFFSPDALEERWITNTHQR 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVI--AVYLPFFLQRRPVFFDI 148
+Y+ K N T+ E + TGF S L R H++ +V + V +I
Sbjct: 61 DYLEKLKNQTLTKSEIRKTGFPLSDALVER------EIHIMHGSVKAALYALEYGVAMNI 114
Query: 149 AA--------------VLADLICIAVY-LTFFLQRRPVFFDI--------AAVLAD---- 181
A +L D+ A Y L L + + D+ A + +
Sbjct: 115 AGGTHHAFTDRGEGFCLLNDIAITANYLLENDLSHKILVVDLDVHQGNGTAEIFQNDNRV 174
Query: 182 LIHFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVD 224
M G + P+ Y L HL +L + +PD +I+ +GVD
Sbjct: 175 FTFSMHGASNYPMHKEKSDLDVGLPDKIEDKAYLKILDVHLKSLLQKVEPDFMIFQSGVD 234
Query: 225 PHQHDELGKLNLTDHG 240
+ D+LG+L L+ G
Sbjct: 235 VLESDKLGRLGLSIQG 250
>gi|78213287|ref|YP_382066.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp.
CC9605]
gi|78197746|gb|ABB35511.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. CC9605]
Length = 316
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTV 559
THHA P G+GFC+ ND A+AAR L+R G VR++LIVDLDVHQ S P +T
Sbjct: 129 GTHHAHPGFGSGFCIFNDCAVAARVLLRTGEVRRILIVDLDVHQGDGSAACFQHDPRVTT 188
Query: 560 LS 561
LS
Sbjct: 189 LS 190
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A + + LP L PDLV+Y+AGVDPH+ D LG+L L+D G
Sbjct: 219 YLAAIADRLPDALDTIAPDLVLYNAGVDPHRDDRLGRLALSDAG 262
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP HRFPM+KF L+ V+ ++ ++ P I+ E VH +
Sbjct: 14 LPVVYHPHYSAPLPSTHRFPMAKFRLLHQLLLEQGVV-QADEVHRPLSIARRDLESVHPR 72
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y F + EQ+ G + L R
Sbjct: 73 TYHEAFSRDHLSRPEQRRIGLPATRPLVQR 102
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 392 HCRPGCTSG--------------MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSM 437
H PG SG +++ I+ + L + GDG+A F DP V T S+
Sbjct: 132 HAHPGFGSGFCIFNDCAVAARVLLRTGEVRRILIVDLDVHQGDGSAACFQHDPRVTTLSV 191
Query: 438 HCGRNYPFRKQCSDLDVAIDVGTDD 462
H N+P RK D+D+ + GT D
Sbjct: 192 HAASNFPLRKVDGDIDIPLADGTSD 216
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
GL MRD VLD + I ATV GGGY A + L QR I+ RAA
Sbjct: 262 GLKMRDRLVLDACLRRRIATATVIGGGYDA-LAPLVQRHAIVVRAAA 307
>gi|407688433|ref|YP_006803606.1| histone deacetylase family protein [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291813|gb|AFT96125.1| histone deacetylase family protein [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 300
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 79/203 (38%), Gaps = 58/203 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA + + D +FT S+H +N+P RKQ SD+D+ +D GT D
Sbjct: 152 VLIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPHRKQRSDIDIGLDKGTADD----- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++T L Q ++R P+
Sbjct: 207 --EYLTTLEQ---------ALTMVMRQFQPD----------------------------- 226
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+I D V H L L G+Y RD V A G+P+A V
Sbjct: 227 ---------AIIYDAGVDVHVND----DLGHLHISTQGVYERDTQVFALAERLGVPIAAV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAA 611
GGGY DI L + ++RAA
Sbjct: 274 IGGGYQRDIAALVEVHIQLYRAA 296
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFCL ND+ LAA+ + + V VLIVDLDVHQ
Sbjct: 120 HHAFADFGSGFCLFNDLYLAAKTMQQTPSVENVLIVDLDVHQ 161
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L ++ QF+PD +IYDAGVD H +D+LG L+++ G
Sbjct: 208 YLTTLEQALTMVMRQFQPDAIIYDAGVDVHVNDDLGHLHISTQG 251
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK---SKQLIEPQQISESIAELVHT 89
+ H + LP HRFP+ K+ +RD+++++ + + + P + S +
Sbjct: 6 VFHPIYSQLDLPERHRFPIEKYVG-----IRDELLNRGVEASRFVTPSPVDLSFLTAYYD 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV G +K + GF WS L R RT
Sbjct: 61 PDYVDALSTGALDKKAMRRIGFPWSQQLIERTRT 94
>gi|188579954|ref|YP_001923399.1| histone deacetylase superfamily protein [Methylobacterium populi
BJ001]
gi|179343452|gb|ACB78864.1| histone deacetylase superfamily [Methylobacterium populi BJ001]
Length = 294
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y+A L+ HLPG++ F PDL+ Y+AGVDPH+ D LG+L+LTD G
Sbjct: 202 YRAVLEAHLPGLVQNFAPDLIFYNAGVDPHRDDRLGRLDLTDDG 245
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
RALI++ L + GDGTA ++P +FT S+HC RNYP K DLD+ + G DA
Sbjct: 145 RALIID--LDVHQGDGTADCLAREPELFTLSIHCERNYPHDKVPGDLDIGLPDGLGDAEY 202
Query: 466 RTVALTWVTFLSQ 478
R V + L Q
Sbjct: 203 RAVLEAHLPGLVQ 215
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + LI+DLDVHQ
Sbjct: 112 GSHHARRAGGAGFCVFNDVAVAALALRREGAIGRALIIDLDVHQ 155
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD YV+ A S +P+ V GGGY +D+D LA R + A
Sbjct: 245 GLRARDRYVVGLARSQKVPLCAVIGGGYGSDVDALAARHAFVFEA 289
>gi|384440597|ref|YP_005655321.1| histone deacetylase [Thermus sp. CCB_US3_UF1]
gi|359291730|gb|AEV17247.1| Histone deacetylase [Thermus sp. CCB_US3_UF1]
Length = 294
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RAL+++ L + G+GTA F +DP VFT S+H RNYP +K+ SDLDV + GT+D
Sbjct: 145 RALVLD--LDAHQGNGTAVFFGEDPTVFTLSLHGERNYPLKKERSDLDVGLPDGTEDG 200
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYL-IRHGIVRKVLIVDLDVHQ 547
THHAFPD G+ L ND+A+A +L + G + L++DLD HQ
Sbjct: 111 GTHHAFPDRAEGYSLFNDVAVALAWLRAKRGFGGRALVLDLDAHQ 155
>gi|145589710|ref|YP_001156307.1| histone deacetylase superfamily protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048116|gb|ABP34743.1| histone deacetylase superfamily [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 299
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 98/257 (38%), Gaps = 65/257 (25%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVID-KSKQLIEPQQISESIAELVHTKEYV 93
+++ + LP HRFPM K+S+ +RD V S + IE S++ H +Y+
Sbjct: 5 YSDHFVLPLPTGHRFPMEKYSR-----LRDLVGTLSSVETIEAPAASDTQILYCHDPQYL 59
Query: 94 HKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQRR-- 142
K GK + +EQK GF WS + R R T IA L
Sbjct: 60 IKVIEGKLSPQEQKEIGFPWSVKMVERSRRSAGATVAAAKTALEEGIAANLAGGTHHAYR 119
Query: 143 ------PVFFDIAAVLADL-------ICIAVY---------LTFFLQRRPVFFDIAAVLA 180
VF D A L + IAV LQ P F ++
Sbjct: 120 AIGSGFCVFNDSAIAARTLQKEISPHLKIAVIDLDVHQGNGTAAILQNDPSIFTLS---- 175
Query: 181 DLIHFMVGINTQPVSGYQATLKEHLPG-----------------ILAQFKPDLVIYDAGV 223
IH G N P Q+ L LP + ++FK D +IY AG
Sbjct: 176 --IH---GENNFPFKKEQSDLDLGLPDGCEDKLYLNALCKALEELESRFKADCIIYLAGA 230
Query: 224 DPHQHDELGKLNLTDHG 240
DPH+ D LG+LNL+ G
Sbjct: 231 DPHEGDRLGRLNLSKEG 247
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I I L + G+GTA I DP++FT S+H N+PF+K+ SDLD+ + G +D
Sbjct: 148 IAVIDLDVHQGNGTAAILQNDPSIFTLSIHGENNFPFKKEQSDLDLGLPDGCED 201
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
+ + W + +RS + + L + + THHA+ G+GFC+ ND
Sbjct: 72 QKEIGFPWSVKMVERSRRSAGATVAAAKTALEEGIAANLAGGTHHAYRAIGSGFCVFNDS 131
Query: 523 ALAARYLIRH-GIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
A+AAR L + K+ ++DLDVHQ + + PS+ LS
Sbjct: 132 AIAARTLQKEISPHLKIAVIDLDVHQGNGTAAILQNDPSIFTLS 175
>gi|124266700|ref|YP_001020704.1| hypothetical protein Mpe_A1507 [Methylibium petroleiphilum PM1]
gi|124259475|gb|ABM94469.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 324
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 72/200 (36%), Gaps = 55/200 (27%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
I L + G+GTA IF DP VFT S+H +N+PFRK+ SDLDV + G DA
Sbjct: 156 IDLDVHQGNGTAAIFRDDPTVFTLSLHGEKNFPFRKEASDLDVELPDGCRDAA------- 208
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+L L ++ H P
Sbjct: 209 -------------------YLAALDGALATLWARHSDAPP-------------------- 229
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
G+V + D H+ R L L GL RD V GIPV GG
Sbjct: 230 -GLV--FYLAGADPHEGDR------LGRLRLSAAGLAERDRRVFAACAERGIPVVMTMGG 280
Query: 592 GYCADIDQLAQRQTIIHRAA 611
GY +ID Q +R A
Sbjct: 281 GYGVNIDDTVTVQLASYREA 300
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+++ Y LP HRFPM+K+ ++RD++ + + +L+E S+ L H +
Sbjct: 5 YSDHYVLPLPAGHRFPMAKYR-----MLRDRLAAELPALRLVEAPAASDGELALAHEPAW 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
V+ +G + +Q+ GF WS + R R
Sbjct: 60 VNAVLDGTLSATQQREIGFPWSEAMVERSR 89
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + W + +RS + I L + + THHA D G+G+C+ ND+
Sbjct: 73 QREIGFPWSEAMVERSRRSVGATIAAARRALDEGVAANLAGGTHHASADKGSGYCVFNDI 132
Query: 523 ALAARYL------IRHGIVRKVLIVDLDVHQ 547
A+AAR + R ++R V ++DLDVHQ
Sbjct: 133 AVAARLMQAEWHRARRTLLR-VAVIDLDVHQ 162
>gi|375105538|ref|ZP_09751799.1| deacetylase, histone deacetylase/acetoin utilization protein
[Burkholderiales bacterium JOSHI_001]
gi|374666269|gb|EHR71054.1| deacetylase, histone deacetylase/acetoin utilization protein
[Burkholderiales bacterium JOSHI_001]
Length = 314
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ I L + G+GTA IF D +VFTFSMH RN+PFRK+ SDLDV + G D
Sbjct: 153 VLVIDLDVHQGNGTAAIFRDDESVFTFSMHGARNFPFRKEASDLDVELPDGCSD 206
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE----INRFSTHHAFPDHGAGFCL 518
A R + W ++QR+ +R+ G + R + E THHA+ G+G+C+
Sbjct: 71 AAQREIGFPWSERMAQRA--VRSVGATIAAARAALAEGVAAQTAGGTHHAYSFKGSGYCV 128
Query: 519 MNDMALAARYLI-----RHGIVRKVLIVDLDVHQ 547
ND+A+AAR + RH +VL++DLDVHQ
Sbjct: 129 FNDVAVAARLMQAETHRRHKRGLRVLVIDLDVHQ 162
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK--QLIEPQQISESIAELVH 88
+ + HT+++ LP HRFPM K+ L+ ++V+ +++E +E L H
Sbjct: 1 MQLFHTDQFVLPLPTGHRFPMPKYR-----LLHEQVLQNGPGIRILEAPAATEGELALAH 55
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
Y+ G + Q+ GF WS +A R
Sbjct: 56 DPGYIDGVLRGTLSTAAQREIGFPWSERMAQRA 88
>gi|422666460|ref|ZP_16726329.1| histone deacetylase superfamily protein, partial [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330976919|gb|EGH76941.1| histone deacetylase superfamily protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 121
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y+ ++ +G + ++Q+ G WS LA R
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARR 91
>gi|124006476|ref|ZP_01691309.1| histone deacetylase superfamily [Microscilla marina ATCC 23134]
gi|123987889|gb|EAY27569.1| histone deacetylase superfamily [Microscilla marina ATCC 23134]
Length = 300
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFCL+ND+A+AA YL+ + KVL++DLDVHQ
Sbjct: 117 GTHHAFTDRGEGFCLLNDIAIAAHYLLDKQLATKVLVIDLDVHQ 160
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ I L + G+GTA IF D VFTFSMH +NYP RK+ SDLD+A+ G +D
Sbjct: 151 VLVIDLDVHQGNGTAEIFQYDNRVFTFSMHGAKNYPLRKEISDLDIALPDGAND 204
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I ++ Y LPP HRFPM K++ L+ + I + P ++E H
Sbjct: 2 LKIAWSDIYAHHLPPGHRFPMEKYNLLPEQLLYEG-IAEPDSFFAPLPVAEEWILKAHDP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y + N + + KE + TGF SAGL R
Sbjct: 61 VYWQRLKNLELSHKEARRTGFPLSAGLVHR 90
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ LPG++A+ KPD V + +GVD D+LG+L ++ G
Sbjct: 207 YLTTLRKTLPGLVAEVKPDFVFFQSGVDVLATDKLGRLGMSIDG 250
>gi|397169769|ref|ZP_10493199.1| histone deacetylase superfamily protein [Alishewanella aestuarii
B11]
gi|396088664|gb|EJI86244.1| histone deacetylase superfamily protein [Alishewanella aestuarii
B11]
Length = 312
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 58/198 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDG+A +F + + T S+HC +N+P RKQ SD D+ ++ D T+L
Sbjct: 162 HQGDGSAALFADNSGIITASLHCEKNFPARKQRSDWDIGLERDCTDQ----------TYL 211
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
S+ + LLR PE+ + D G
Sbjct: 212 EAVSQSLDT------LLRWYQPELVLY-------DAG----------------------- 235
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+D+H+ L +L+ G+ RD VL AGIPVA V GGGY D
Sbjct: 236 ------VDIHRQD------DLGLLNISTAGVLARDTLVLQRCHDAGIPVAAVIGGGYQRD 283
Query: 597 IDQLAQRQTIIHRAATHV 614
+ L Q + +AA V
Sbjct: 284 LQALTQVHLQLFKAAFAV 301
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
I H E TLP NHR+P+ K+ + L+ V D + L PQ I EL+H Y
Sbjct: 9 IYHPCYSELTLPANHRYPIGKYRTLYQRLLALGVPDSAFYL--PQAIKAQALELLHEPAY 66
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G + + GF WS L +R T
Sbjct: 67 VNALCQGTLDARAMRRIGFPWSPELITRSLT 97
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 455 AIDVGTDDA-GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPD 511
A+ GT DA R + W L RS + L L S HHAF
Sbjct: 69 ALCQGTLDARAMRRIGFPWSPELITRSLTSLGGTLLCAELALEQGLALHLSGGYHHAFYA 128
Query: 512 HGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
G+GFCL ND+A AA + + GI +LI D DVHQ
Sbjct: 129 EGSGFCLFNDLAFAALSIQQRGI-GPILIFDCDVHQ 163
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L +L ++P+LV+YDAGVD H+ D+LG LN++ G
Sbjct: 210 YLEAVSQSLDTLLRWYQPELVLYDAGVDIHRQDDLGLLNISTAG 253
>gi|225012063|ref|ZP_03702500.1| histone deacetylase superfamily [Flavobacteria bacterium MS024-2A]
gi|225003618|gb|EEG41591.1| histone deacetylase superfamily [Flavobacteria bacterium MS024-2A]
Length = 305
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF +P+VFT S+H +NYPFRK+ SDLD+ ++ GT+D
Sbjct: 156 ILIIDLDVHQGNGTASIFKTNPSVFTLSVHGSKNYPFRKEKSDLDIGLEDGTED 209
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTV 559
THHAF D G FCL+ND A+AA+YL+ +K+LI+DLDVHQ + + PS+
Sbjct: 122 GTHHAFSDRGEAFCLLNDQAIAAQYLLDTKKAKKILIIDLDVHQGNGTASIFKTNPSVFT 181
Query: 560 LS 561
LS
Sbjct: 182 LS 183
>gi|86134858|ref|ZP_01053440.1| deacetylase [Polaribacter sp. MED152]
gi|85821721|gb|EAQ42868.1| deacetylase [Polaribacter sp. MED152]
Length = 300
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + G FC++ND A+AA+YL +V+KVLIVDLDVHQ
Sbjct: 117 GTHHAFSNRGEAFCMLNDQAIAAKYLQHKNLVKKVLIVDLDVHQ 160
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA IF D +VFTFSMH NYPF K+ SDLD+A++ T+D
Sbjct: 151 VLIVDLDVHQGNGTAEIFANDNSVFTFSMHGKSNYPFIKESSDLDIALENDTND 204
>gi|149276367|ref|ZP_01882511.1| deacetylase [Pedobacter sp. BAL39]
gi|149232887|gb|EDM38262.1| deacetylase [Pedobacter sp. BAL39]
Length = 299
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G GFCL+ND A+AA YL+ G+V +VLI+DLDVHQ
Sbjct: 117 GTHHAGSDWGEGFCLLNDQAIAANYLLDKGLVGRVLIIDLDVHQ 160
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
++ I L + G+GTA IF D VFTFSMH +N+PFRK+ SDLD+ + G DA
Sbjct: 151 VLIIDLDVHQGNGTAEIFADDRRVFTFSMHGDKNFPFRKERSDLDIPLADGVGDA 205
>gi|289675853|ref|ZP_06496743.1| histone deacetylase superfamily protein, partial [Pseudomonas
syringae pv. syringae FF5]
Length = 101
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P +HRFPM KF +YL+ D + QL+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPADHRFPMDKFRLLRDYLI-DSGLTSDVQLMRPELCPADILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y+ ++ +G + ++Q+ G WS LA R
Sbjct: 62 SYISRYLSGDLSREDQRRLGLPWSEALARR 91
>gi|148655721|ref|YP_001275926.1| histone deacetylase superfamily protein [Roseiflexus sp. RS-1]
gi|148567831|gb|ABQ89976.1| histone deacetylase superfamily [Roseiflexus sp. RS-1]
Length = 298
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRF---STHHAFPDHGAGFCLMNDM 522
R + W L +RS + I LS I THHAF DHG G+C+ ND
Sbjct: 73 RQIGFPWSPHLVERSRRSVGATIAACRTALSGDGIAASLAGGTHHAFADHGEGYCVFNDS 132
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
+AAR + G VR+V+I+D DVHQ
Sbjct: 133 VIAARVMQAEGRVRRVVIIDCDVHQ 157
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 63/260 (24%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS-KQLIEPQQISESIAELVHT 89
+ + +++ + LP HRFP++K++ ++R++ + +LI P + HT
Sbjct: 1 MKLFYSDTFVLPLPEGHRFPITKYA-----MLRERASAEGLGELIVPAAADDRDILRAHT 55
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFD-I 148
+Y+H+ G +++E + GF WS L R R +V R + D I
Sbjct: 56 ADYLHRIQIGAMSDREMRQIGFPWSPHLVERSRR--------SVGATIAACRTALSGDGI 107
Query: 149 AAVLA-----------DLICI---AVYLTFFLQ-----RRPVFFD--------IAAVLAD 181
AA LA + C+ +V +Q RR V D IAA+LA
Sbjct: 108 AASLAGGTHHAFADHGEGYCVFNDSVIAARVMQAEGRVRRVVIIDCDVHQGNGIAAILAG 167
Query: 182 ---LIHFMV-GINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYD 220
+ F + G P + Y A L++ L + Q DL IY
Sbjct: 168 DETIFSFSIHGAKNYPFRKERSNLDIALEDGTGDAVYLAALEQGLYQAIEQSCADLAIYL 227
Query: 221 AGVDPHQHDELGKLNLTDHG 240
AG DP++ D LG+L +T G
Sbjct: 228 AGADPYEDDRLGRLKVTKMG 247
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ G+G A I D +F+FS+H +NYPFRK+ S+LD+A++ GT DA
Sbjct: 156 HQGNGIAAILAGDETIFSFSIHGAKNYPFRKERSNLDIALEDGTGDA 202
>gi|344202956|ref|YP_004788099.1| histone deacetylase [Muricauda ruestringensis DSM 13258]
gi|343954878|gb|AEM70677.1| Histone deacetylase [Muricauda ruestringensis DSM 13258]
Length = 300
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D G FC++ND A+ ARYL+ + + +K+LIVDLDVHQ
Sbjct: 117 GTHHAYSDRGEAFCMLNDQAIGARYLLNNELAKKILIVDLDVHQ 160
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF D +VFTFSMH NYPF+K+ SDLD+ ++ GT D
Sbjct: 151 ILIVDLDVHQGNGTAEIFKTDHSVFTFSMHGNGNYPFKKEISDLDIPLEKGTTD 204
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + LK LP +L Q +PD + Y GVD + D+LG L++T G
Sbjct: 207 YLSLLKNTLPELLEQVQPDFIFYLCGVDVLESDKLGTLSMTLEG 250
>gi|149199017|ref|ZP_01876057.1| histone deacetylase superfamily protein [Lentisphaera araneosa
HTCC2155]
gi|149137806|gb|EDM26219.1| histone deacetylase superfamily protein [Lentisphaera araneosa
HTCC2155]
Length = 300
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV--PSLTVLS 561
THHAF DHG G+CL+ND A+A R L ++++ LIVDLDVHQ S + +V +
Sbjct: 117 GTHHAFSDHGEGYCLLNDHAIAIRALQNRRLIKRALIVDLDVHQGNGSAEIFANDASVFT 176
Query: 562 SCVPGLYMRDYYV------LDTAISAGIPVA 586
+ G R+Y LD A++ GI A
Sbjct: 177 LSIHG--ERNYPTKKEKSDLDIALADGIEDA 205
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RALI++ L + G+G+A IF D +VFT S+H RNYP +K+ SDLD+A+ G +DA
Sbjct: 150 RALIVD--LDVHQGNGSAEIFANDASVFTLSIHGERNYPTKKEKSDLDIALADGIEDA 205
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+ + + Y +L NH FPM K+ + ++ +I+K Q EP+ ISE L H+
Sbjct: 2 IKVAYKENYSHSLWENHPFPMEKYELLWRQILYQGIIEKD-QYFEPKAISEEDILLCHSS 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
EY +K + ++KE K GF S L +R
Sbjct: 61 EYWNKLNQLQLSDKEVKKIGFPLSRDLVNR 90
>gi|156743387|ref|YP_001433516.1| histone deacetylase superfamily protein [Roseiflexus castenholzii
DSM 13941]
gi|156234715|gb|ABU59498.1| histone deacetylase superfamily [Roseiflexus castenholzii DSM
13941]
Length = 297
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 72/181 (39%), Gaps = 58/181 (32%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ G+G A I D +F+FS+H RNYPFRK+ SDLD+A++ GT D G AL T L
Sbjct: 156 HQGNGIAAILTGDDTIFSFSIHGSRNYPFRKERSDLDIALEDGTGDTGY-LAALE--TGL 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q E+ R D+A
Sbjct: 213 RQAVERSR-----------------------------------ADLA------------- 224
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+ + D ++H R L LS GL RD V + +AGIPVA GGY
Sbjct: 225 -IYLAGADPYEHDR------LGRLSLTKAGLLERDRMVFEVCRNAGIPVAITMAGGYARA 277
Query: 597 I 597
I
Sbjct: 278 I 278
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINR---FSTHHAFPDHGAGFCLMNDM 522
R + W L +RS + I LS THHAF DHG G+C+ ND
Sbjct: 73 RQIGFPWSPHLIERSRRSVGATIAACRAALSGDGFAANLAGGTHHAFADHGEGYCVFNDS 132
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
+AAR + G VR+V+I+D DVHQ
Sbjct: 133 VIAARAMQAEGRVRRVVIIDCDVHQ 157
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS-KQLIEPQQISESIAELVHT 89
+ + +++ + LP HRFP++K++ L+R++ + LI P+ + HT
Sbjct: 1 MKLFYSDSFVLPLPEGHRFPIAKYA-----LLRERAAAEGLGDLILPEAADDRTLLRAHT 55
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+Y+H+ G +++E + GF WS L R R
Sbjct: 56 ADYLHRIKTGAISDREMRQIGFPWSPHLIERSR 88
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY A L+ L + + + DL IY AG DP++HD LG+L+LT G
Sbjct: 202 TGYLAALETGLRQAVERSRADLAIYLAGADPYEHDRLGRLSLTKAG 247
>gi|424033537|ref|ZP_17772951.1| histone deacetylase domain protein [Vibrio cholerae HENC-01]
gi|408874401|gb|EKM13572.1| histone deacetylase domain protein [Vibrio cholerae HENC-01]
Length = 307
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 56/260 (21%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK----QLIEPQQISESIAE 85
LP+I+ Y + LP HR+P+ K+ + V+DK++ + + +PQ ++ +
Sbjct: 2 LPLIYHPIYSQLELPEGHRYPIMKYQYLYQ-AVKDKLVQQDWGQHIEFSQPQPLNVDEIK 60
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
LVH++EYV +G + + GF WS L SR T H +A++L
Sbjct: 61 LVHSEEYVDLLVSGDMPAAKMRRIGFPWSETLVSRTLMSTAGTVLTAEKALEHGVAIHLS 120
Query: 137 -FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT---- 191
+ F + DL+ A Y+ L+ V D ++ +H G T
Sbjct: 121 GGYHHAHKDFGSGFCLFNDLVIAAKYM---LETEHV--DKVLIIDSDVHHGDGTATLCAD 175
Query: 192 ------------------QPVSG-------------YQATLKEHLPGILAQFKPDLVIYD 220
+P S + T KE + L +PD+VIYD
Sbjct: 176 ELDIITLSFHCDKNFPARKPDSDLDVPLSRGTSDDTFLMTFKEVVEMALNLHRPDMVIYD 235
Query: 221 AGVDPHQHDELGKLNLTDHG 240
AGVD H DELG +++ G
Sbjct: 236 AGVDIHTDDELGYFDVSTQG 255
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 80/218 (36%), Gaps = 58/218 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+++ H ++ I + GDGTA + + + T S HC +N+P RK SDLDV + GT
Sbjct: 148 LETEHVDKVLIIDSDVHHGDGTATLCADELDIITLSFHCDKNFPARKPDSDLDVPLSRGT 207
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
D TFL E + L L P++
Sbjct: 208 SDD----------TFLMTFKE------VVEMALNLHRPDM-------------------- 231
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+I D V HT L G+Y RD +++
Sbjct: 232 ------------------VIYDAGVDIHTDD----ELGYFDVSTQGIYERDRFIMQLMKD 269
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
G+PVA V GGGY ++ L + AA VYK R
Sbjct: 270 KGVPVAAVVGGGYRSNHSDLVPIHMQLINAAESVYKPR 307
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+RT+ T T L+ +EK +G+ + L HHA D G+GFCL ND+ +
Sbjct: 94 SRTLMSTAGTVLT--AEKALEHGVAIHL---------SGGYHHAHKDFGSGFCLFNDLVI 142
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA+Y++ V KVLI+D DVH
Sbjct: 143 AAKYMLETEHVDKVLIIDSDVHH 165
>gi|325106665|ref|YP_004267733.1| histone deacetylase [Planctomyces brasiliensis DSM 5305]
gi|324966933|gb|ADY57711.1| Histone deacetylase [Planctomyces brasiliensis DSM 5305]
Length = 302
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ I + + G+GTA IF+KDP+VFTFS+H +N+P +K SDLDV +D T+D
Sbjct: 150 VLVIDVDVHQGNGTAAIFEKDPSVFTFSIHGAKNFPLKKTISDLDVPLDDNTED 203
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAE------LVHTKEYVHKF 96
LP HRFPMSK+S L+R +++++ ++EPQ + E+ A VHT EY+ +
Sbjct: 13 LPETHRFPMSKYS-----LLRARLLEQG--ILEPQVLHEAPAASDEQLLRVHTAEYLKRV 65
Query: 97 FNGKTTEKEQKVTGFEWSAGLASRVR 122
G T++E + GF WS + R R
Sbjct: 66 KQGGLTKQETRRIGFPWSLEMVERSR 91
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH+F D G G+C+ ND+A A+R L + + +VL++D+DVHQ
Sbjct: 116 GTHHSFADCGEGYCVFNDVACASRDLQQTVGLGQVLVIDVDVHQ 159
>gi|226943137|ref|YP_002798210.1| histone deacetylase superfamily protein [Azotobacter vinelandii DJ]
gi|226718064|gb|ACO77235.1| histone deacetylase superfamily [Azotobacter vinelandii DJ]
Length = 316
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 78/207 (37%), Gaps = 64/207 (30%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV---ALTWV 473
+ GDGTA I + P T S+HC +N+P RK SD D+ + G DA V AL ++
Sbjct: 170 HQGDGTARILEDTPEAITVSLHCEQNFPARKARSDWDIGLPRGMGDADYLKVVDDALNYL 229
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
L Q + + G+ H D G+ ++D LAAR
Sbjct: 230 LPLYQPDLVLYDAGV---------------DVHQ---DDALGYLALSDAGLAAR------ 265
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
D VL ++ GI V V GGGY
Sbjct: 266 -------------------------------------DGAVLRHCLARGIAVLGVIGGGY 288
Query: 594 CADIDQLAQRQTIIHRAATHVYKERGL 620
D LA+R I+H A +++E GL
Sbjct: 289 DRDRAALARRHGILHHGAARLWRELGL 315
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ ++Y + P HRFPM KF ++LV D + +L P+ I L H
Sbjct: 13 LPLVYHDEYSPSFPDGHRFPMEKFRLLRDHLV-DSGLTSDAELRRPEPCPTDILALAHDP 71
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
Y+ ++ +G + +E + G W+ LA R
Sbjct: 72 AYIERYCSGALSREELRRLGLPWTPALARRT 102
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L++R+ + L L + THHA DH +GFC+ ND+A
Sbjct: 88 RRLGLPWTPALARRTVLAVGGSLLAAELALEHGLACHLAGGTHHAHHDHPSGFCIFNDLA 147
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+ +RYL+ G V +VLI D DVHQ
Sbjct: 148 VVSRYLLASGRVGRVLIFDCDVHQ 171
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L +L ++PDLV+YDAGVD HQ D LG L L+D G
Sbjct: 218 YLKVVDDALNYLLPLYQPDLVLYDAGVDVHQDDALGYLALSDAG 261
>gi|219848505|ref|YP_002462938.1| histone deacetylase superfamily protein [Chloroflexus aggregans DSM
9485]
gi|219542764|gb|ACL24502.1| histone deacetylase superfamily [Chloroflexus aggregans DSM 9485]
Length = 299
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTW 472
+ GDGTA IF DP VFTFS+H N+PFRKQ SDLD+A+ T DA AL W
Sbjct: 158 HQGDGTAAIFADDPTVFTFSIHGAHNFPFRKQQSDLDIALPDATGDAAYLD-ALEW 212
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISE--SIAELV- 87
+ + +++ + LPP HRFPM K++ L+R++VI ++ ++ + E S+ ELV
Sbjct: 1 MRVFYSDTFVLPLPPGHRFPMEKYA-----LLRERVIAENIVSLDRLHVPEPASVDELVR 55
Query: 88 -HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
HT Y+ + G+ T E + GF WS + R R
Sbjct: 56 VHTPAYIERVMTGRLTGAEIRRIGFPWSPQMVERSR 91
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGFCLMND 521
R + W + +RS R+ G + R++ E +N THHAF D GAG+C+ ND
Sbjct: 76 RRIGFPWSPQMVERSR--RSAGATIAACRVALQEGVGVNLAGGTHHAFADAGAGYCVFND 133
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAI 579
A+AAR + G VR++ I+D DVHQ T +I TV + + G + + + +
Sbjct: 134 AAVAARAMQAEGRVRQIAIIDCDVHQGDGTAAIFADDPTVFTFSIHGAHNFPFRKQQSDL 193
Query: 580 SAGIPVATVTGGGYCADIDQLAQRQT 605
+P A TG D + RQT
Sbjct: 194 DIALPDA--TGDAAYLDALEWGLRQT 217
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L+ L A KPDLVIY AG DP+ D LG+L+LT G
Sbjct: 204 AAYLDALEWGLRQTFATAKPDLVIYLAGADPYYDDRLGRLSLTKAG 249
>gi|363580001|ref|ZP_09312811.1| histone deacetylase [Flavobacteriaceae bacterium HQM9]
Length = 300
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF VFTFSMH +NYPFRK+ SDLD+A+ GT+D
Sbjct: 151 ILIVDLDVHQGNGTAEIFQNQANVFTFSMHGEKNYPFRKETSDLDMALPNGTND 204
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + G FCL+ND A+AA YL+ + + +K+LIVDLDVHQ
Sbjct: 117 GTHHAFSNRGEAFCLLNDQAVAAAYLLHYQLAKKILIVDLDVHQ 160
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 93/246 (37%), Gaps = 49/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
YE L HRFPM K+ L+ + K + EP +S++ VHTKEY+ +
Sbjct: 10 YEHPLKKGHRFPMEKYDLLPKQLLHEGTCTK-ENFFEPGVVSKTDLLRVHTKEYIQNLTD 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP-----FFLQRRPV 144
+ E + GF SA L R T H IA+ + F R
Sbjct: 69 LNLPKTEARAIGFPLSAALVEREFVITQGTIDAAKFALQHGIAMNIAGGTHHAFSNRGEA 128
Query: 145 FFDIAAVLADLICIAVYLTFF-LQRRPVFFDI----AAVLADLIHFMVGINTQPVSG--- 196
F +L D A YL + L ++ + D+ A++ + T + G
Sbjct: 129 F----CLLNDQAVAAAYLLHYQLAKKILIVDLDVHQGNGTAEIFQNQANVFTFSMHGEKN 184
Query: 197 ----------------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
Y LKE LP + A+ +P+ V Y GVD D+LGKL
Sbjct: 185 YPFRKETSDLDMALPNGTNDDTYLKLLKEKLPELYAKVQPNFVFYLCGVDILVTDKLGKL 244
Query: 235 NLTDHG 240
+ T G
Sbjct: 245 SCTLQG 250
>gi|119774382|ref|YP_927122.1| histone deacetylase/AcuC/AphA family protein [Shewanella
amazonensis SB2B]
gi|119766882|gb|ABL99452.1| histone deacetylase/AcuC/AphA family protein [Shewanella
amazonensis SB2B]
Length = 305
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 58/216 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ H + +M + + GDGTA + + + S+HC N+P RK SD DV + G
Sbjct: 144 IDEGHASRVMILDCDVHQGDGTATLCADMDDIISVSVHCDSNFPSRKPASDYDVPLPKGL 203
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
+D ++ L Q +F +LL L P++ + AG
Sbjct: 204 EDD-------DYLDALEQ---------VFQYLLHLEKPDVILYD---------AG----- 233
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+DVH R L L+ GL RD V+ A +
Sbjct: 234 ----------------------VDVHHDDR------LGHLNISTQGLLRRDKLVITMARN 265
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
AG+P+A V GGGY A+ L++R + + AA V++
Sbjct: 266 AGLPLAAVIGGGYSANPLHLSERHSQLFIAANQVWQ 301
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ HT+ + LPP H+FP++K++ +L+ ++ Q + P + + + VH +Y
Sbjct: 5 VYHTSYSKLVLPPKHQFPITKYAHLRQHLLEYGHALEA-QFVSPDPVDATFIKGVHDSDY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLP-FFLQRR 142
V F NG + + + GF S L R + + IA++L +
Sbjct: 64 VDAFLNGTLSPQAIRRLGFPLSHALVERTLHSLGGSLLTAKLAMSRGIALHLAGGYHHAH 123
Query: 143 PVFFDIAAVLADLICIAVYLTFFLQ-RRPVFFD-----------IAAVLADLIHFMVGIN 190
F V DL+ A +L R + D + A + D+I V +
Sbjct: 124 RDFGSGYCVFNDLVLAARHLIDEGHASRVMILDCDVHQGDGTATLCADMDDIISVSVHCD 183
Query: 191 T-----QPVSGYQATLKEHLPG-------------ILAQFKPDLVIYDAGVDPHQHDELG 232
+ +P S Y L + L +L KPD+++YDAGVD H D LG
Sbjct: 184 SNFPSRKPASDYDVPLPKGLEDDDYLDALEQVFQYLLHLEKPDVILYDAGVDVHHDDRLG 243
Query: 233 KLNLTDHG 240
LN++ G
Sbjct: 244 HLNISTQG 251
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+G+C+ ND+ LAAR+LI G +V+I+D DVHQ
Sbjct: 120 HHAHRDFGSGYCVFNDLVLAARHLIDEGHASRVMILDCDVHQ 161
>gi|441495684|ref|ZP_20977924.1| Deacetylase [Fulvivirga imtechensis AK7]
gi|441440649|gb|ELR73901.1| Deacetylase [Fulvivirga imtechensis AK7]
Length = 300
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF + G GFCL+NDMA+AA +L+ + K+LIVDLDVHQ
Sbjct: 117 GTHHAFTNRGEGFCLLNDMAVAAHFLLDQQLAGKILIVDLDVHQ 160
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF D VFTFSMH RNYP +K+ SDLD+ + G DD
Sbjct: 151 ILIVDLDVHQGNGTAQIFRNDARVFTFSMHGARNYPMQKEISDLDIGLPDGADD 204
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I ++ Y LP NHRFPM K+ L+ + I S +P +E++ H
Sbjct: 2 LKIAWSDCYCHPLPANHRFPMEKYELLPEQLLYEGTISTSN-FFDPGLPTEAMVLRTHES 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY 134
Y K + K + E + TGF S L R T T + A Y
Sbjct: 61 AYWEKLRDQKLSRSEIRRTGFPLSRQLVDREMTIVHGTTLCARY 104
>gi|425901732|ref|ZP_18878323.1| histone deacetylase family protein [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892988|gb|EJL09464.1| histone deacetylase family protein [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 306
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+I+ Y P HRFPM KF ++LV D + + L+ P+ I L H
Sbjct: 3 LPLIYHEDYSPEFPAEHRFPMDKFRLLRDHLV-DSGLTRDADLLRPELCPREILALAHDP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
Y+ ++ G+ + ++Q+ G W+ LA R
Sbjct: 62 GYIERYMAGELSREDQRRLGLPWNEALARRT 92
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 73/203 (35%), Gaps = 58/203 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + P T S+HC +N+P RK SD D+ + +G D V
Sbjct: 160 HQGDGTARILEHTPDAVTVSLHCEKNFPARKATSDWDIPLPMGMGDTDYLKVV------- 212
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ +LL L P++ + AG + D AL L G+
Sbjct: 213 ---------DDALNYLLPLYQPDLVLYD---------AGVDVHKDDALGYLKLTDQGVA- 253
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
RD V+ + IPV V GGGY D
Sbjct: 254 --------------------------------ARDEQVMRHCLGRDIPVLGVIGGGYSKD 281
Query: 597 IDQLAQRQTIIHRAATHVYKERG 619
LA+R I+H +A V+ G
Sbjct: 282 RQALARRHGILHHSAQRVWTSLG 304
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA DH AGFC+ ND+
Sbjct: 77 QRRLGLPWNEALARRTVRAVGGSLLAAEQALEHGLACHLAGGTHHAHYDHPAGFCIFNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ + YL+ G V +VLI D DVHQ
Sbjct: 137 AVISHYLLEAGRVGRVLIFDCDVHQ 161
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L +L ++PDLV+YDAGVD H+ D LG L LTD G
Sbjct: 208 YLKVVDDALNYLLPLYQPDLVLYDAGVDVHKDDALGYLKLTDQG 251
>gi|320451507|ref|YP_004203603.1| deacetylase [Thermus scotoductus SA-01]
gi|320151676|gb|ADW23054.1| deacetylase [Thermus scotoductus SA-01]
Length = 293
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
+ R ++ + L + G+GTA F +DP VFT S+H RNYP RK+ SDLDV + G
Sbjct: 138 REGFRGRVLVVDLDAHQGNGTAVFFQEDPTVFTLSLHGERNYPLRKERSDLDVGLPDGVG 197
Query: 462 D 462
D
Sbjct: 198 D 198
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+PD G+ L ND+A+A +L R G +VL+VDLD HQ
Sbjct: 112 THHAYPDRAEGYSLFNDVAVAVAWLRREGFRGRVLVVDLDAHQ 154
>gi|323493174|ref|ZP_08098305.1| histone deacetylase/AcuC/AphA family protein [Vibrio brasiliensis
LMG 20546]
gi|323312645|gb|EGA65778.1| histone deacetylase/AcuC/AphA family protein [Vibrio brasiliensis
LMG 20546]
Length = 307
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 53/259 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVR----DKVIDKSKQLIEPQQISESIAE 85
+P+I+ + Y + LP HR+P++K+ + + + D+ +S + +EP+ ++++
Sbjct: 2 IPLIYHSLYSQLPLPEGHRYPINKYRLLYEAIEQLREGDEQWQQSLRYVEPEPVNKAELS 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
+H EY+ +G + + GF WS L +R T H IA++L
Sbjct: 62 QIHCGEYIESLISGALPAVKMRRIGFPWSQELINRTLMSAGGTCETVRQSIEHGIAIHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSG 196
F L + + IA ++ D ++ +H G T S
Sbjct: 122 GGYHHAHFDFGSGFCLINDLVIAAKRGLTIEG----VDKILIVDSDVHHGDGTATLCASD 177
Query: 197 YQ-ATLKEH----LPG-------------------ILAQF-----------KPDLVIYDA 221
Q TL H P LA F +PD+++YDA
Sbjct: 178 EQIVTLSFHCDKNFPARKPDSDLDVPLTRDTGDEEFLATFTSVVEMAINLHQPDVIVYDA 237
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVD HQ DELG LN+T G
Sbjct: 238 GVDIHQDDELGYLNVTSEG 256
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 58/197 (29%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + D + T S HC +N+P RK SDLDV + T D G+ T+ + +
Sbjct: 167 GDGTATLCASDEQIVTLSFHCDKNFPARKPDSDLDVPL---TRDTGDEEFLATFTSVVE- 222
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ L P++ + AG
Sbjct: 223 ------------MAINLHQPDVIVYD---------AG----------------------- 238
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+D+HQ L L+ G+Y RD ++ + A +P+A V GGGY +
Sbjct: 239 ----VDIHQDDE------LGYLNVTSEGIYARDRFMFELAKQKQLPIACVVGGGYRSQHH 288
Query: 599 QLAQRQTIIHRAATHVY 615
+L + RAA Y
Sbjct: 289 ELVPIHMQLIRAAIDTY 305
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ +AA+ + V K+LIVD DVH
Sbjct: 125 HHAHFDFGSGFCLINDLVIAAKRGLTIEGVDKILIVDSDVH 165
>gi|289675852|ref|ZP_06496742.1| histone deacetylase family protein [Pseudomonas syringae pv.
syringae FF5]
Length = 195
Score = 62.8 bits (151), Expect = 5e-07, Method: Composition-based stats.
Identities = 56/204 (27%), Positives = 78/204 (38%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 50 HQGDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV------- 102
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ + +LL P++ + D G
Sbjct: 103 ---------DDLLNYLLPFYKPDLVLY-------DAG----------------------- 123
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+DVH+ +L L GL RD VL +S IPV V GGGY D
Sbjct: 124 ------VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKD 171
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 172 RQALARRHGILHHSAQRVWNDMGL 195
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D+ AGFC+ ND+A+ ++YL++ G V KVLI D DVHQ
Sbjct: 9 THHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQ 51
Score = 47.8 bits (112), Expect = 0.016, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L +L +KPDLV+YDAGVD H+ D LG L LTD G
Sbjct: 98 YLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKDDALGYLQLTDQG 141
>gi|400288975|ref|ZP_10791007.1| histone deacetylase superfamily protein [Psychrobacter sp. PAMC
21119]
Length = 305
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 49/254 (19%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I +++ + +P HRFPM K++ L+ + I P ++SE HT
Sbjct: 2 LKIAYSDIFRYAVPEKHRFPMQKYTMIPERLLAEGTISMVN-FFAPARLSEEEILTTHTM 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA 150
+Y +K KE + GFE + L R R T+ A+Y Q+ V ++A
Sbjct: 61 DYWYKLKTQTLPRKEARPIGFEMTEALVDRGRHIAHATYECALY----AQQYGVAMNVAG 116
Query: 151 ----VLADL---------ICIA--VYLTFFLQRRPVFFDI--------AAVLAD----LI 183
AD +CIA + L ++ + D+ A+++A+ +
Sbjct: 117 GTHHAFADHGEGFCVFNDVCIASNLLLNRGQAQKILVVDLDVHQGNGNASIMANEPRVFV 176
Query: 184 HFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
M G P + Y L+E LP ++ +F PD++ Y + VD
Sbjct: 177 FSMHGAKNYPFRKEISDLDIELANNTGDAEYLQILEETLPRLITEFAPDMIFYQSAVDVL 236
Query: 227 QHDELGKLNLTDHG 240
D+LGKL LT G
Sbjct: 237 ATDKLGKLGLTQAG 250
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF DHG GFC+ ND+ +A+ L+ G +K+L+VDLDVHQ
Sbjct: 117 GTHHAFADHGEGFCVFNDVCIASNLLLNRGQAQKILVVDLDVHQ 160
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + G+G A I +P VF FSMH +NYPFRK+ SDLD+ + T DA
Sbjct: 151 ILVVDLDVHQGNGNASIMANEPRVFVFSMHGAKNYPFRKEISDLDIELANNTGDA 205
>gi|93006940|ref|YP_581377.1| histone deacetylase superfamily protein [Psychrobacter
cryohalolentis K5]
gi|92394618|gb|ABE75893.1| histone deacetylase superfamily [Psychrobacter cryohalolentis K5]
Length = 305
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF DHG GFC+ ND+ +A+ L+ G +K+L+VDLDVHQ
Sbjct: 117 GTHHAFSDHGEGFCVFNDVCIASNLLLNRGQAQKILVVDLDVHQ 160
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 55/257 (21%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I +++ + ++P HRFPM K++ L+ +K I + P ++SE HT
Sbjct: 2 LKIAYSDIFRYSVPEKHRFPMQKYTMIPERLLAEKTI-SANNFFAPTRLSEDEILTTHTA 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA 150
+Y ++ KE + GFE + L R R T+ A+Y Q+ V ++A
Sbjct: 61 DYWYQLKTQTLPRKEARAIGFEMTPELVERGRYIAHATYECALY----AQQYGVAMNVAG 116
Query: 151 --------------VLADLICIAVYLTFFLQRRP------VFFDI------AAVLAD--- 181
V D +CIA L L R V D+ A+++A+
Sbjct: 117 GTHHAFSDHGEGFCVFND-VCIASNL--LLNRGQAQKILVVDLDVHQGNGNASIMANEPR 173
Query: 182 -LIHFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGV 223
I M G P Y L++ LP +++ PD++ Y + V
Sbjct: 174 VFIFSMHGAKNYPFRKQVSDLDIELDNDTGDEQYLQILEDTLPRLISDVAPDMIFYQSAV 233
Query: 224 DPHQHDELGKLNLTDHG 240
D D+LGKL LT G
Sbjct: 234 DVLATDKLGKLGLTIEG 250
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+G A I +P VF FSMH +NYPFRKQ SDLD+ +D T D
Sbjct: 151 ILVVDLDVHQGNGNASIMANEPRVFIFSMHGAKNYPFRKQVSDLDIELDNDTGD 204
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 552 IPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
+ L L + G RD YVL A +A IP+A V GGGY DI+ + + R A
Sbjct: 236 LATDKLGKLGLTIEGCKARDEYVLRQAKAAKIPIAIVMGGGYSEDIEDVVEAHCNTFRLA 295
Query: 612 THVY 615
++
Sbjct: 296 QQIF 299
>gi|365096461|ref|ZP_09331053.1| histone deacetylase [Acidovorax sp. NO-1]
gi|363413841|gb|EHL21030.1| histone deacetylase [Acidovorax sp. NO-1]
Length = 314
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 84/221 (38%), Gaps = 60/221 (27%)
Query: 398 TSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAID 457
+G + S + I L + G+GTA IF D +VFT S+H RN+PFRK+ SDLDV +
Sbjct: 147 AAGGRGSRPLQVAVIDLDVHQGNGTAHIFQGDHSVFTVSLHGARNFPFRKEPSDLDVELP 206
Query: 458 VG-TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGF 516
G TDD + + L T L QR F+F L +DP
Sbjct: 207 DGCTDDDYLQALELALQT-LEQRFAPR-----FVFYLAGADP------------------ 242
Query: 517 CLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLD 576
H+ R L L+ GL RD V D
Sbjct: 243 -----------------------------HEGDR------LGRLAVTHDGLEARDRRVFD 267
Query: 577 TAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A IPVA GGY +++ + Q R A ++
Sbjct: 268 WAWQRRIPVAFAMAGGYGRNLEDTVKAQLTTWRVAWQYHQR 308
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK----SKQLIEPQQISESIAELVHTK 90
+ + + LP HRFPM+K+ L+RD++ S Q+ P E LVHT
Sbjct: 5 YADHFVLPLPEAHRFPMAKYR-----LLRDRIAQHLPGVSLQVATPATDRE--LALVHTS 57
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
Y+ +G Q+ GF WS + R R
Sbjct: 58 HYIDAIADGTLAAPAQREIGFPWSEAMVERAR 89
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLI----------RHGIVRKVLIVDLDVHQ 547
THHA+ G+GFC+ ND+A+A R L R +V ++DLDVHQ
Sbjct: 114 GTHHAYAHKGSGFCVFNDVAVATRLLQAQWAQGAAGGRGSRPLQVAVIDLDVHQ 167
>gi|326800435|ref|YP_004318254.1| histone deacetylase [Sphingobacterium sp. 21]
gi|326551199|gb|ADZ79584.1| Histone deacetylase [Sphingobacterium sp. 21]
Length = 300
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF + VFTFSMHC RN+PFRK+ SDLD+ + G D
Sbjct: 151 ILIIDLDVHQGNGTADIFKSEQRVFTFSMHCQRNFPFRKEHSDLDIGLPEGVGD 204
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA + G GFCL+ND A+ A YL+ +K+LI+DLDVHQ
Sbjct: 117 GTHHAGSNWGEGFCLLNDQAIGAHYLLSQKKAKKILIIDLDVHQ 160
>gi|170746500|ref|YP_001752760.1| histone deacetylase superfamily protein [Methylobacterium
radiotolerans JCM 2831]
gi|170653022|gb|ACB22077.1| histone deacetylase superfamily [Methylobacterium radiotolerans JCM
2831]
Length = 306
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 451 DLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHA 508
D +A DVG + R + L L +RS + L L++ + +HHA
Sbjct: 64 DAVLACDVGREI--ERAIGLPVDAALVRRSRASVGGTLLAGRLALAEGLAGSAAGGSHHA 121
Query: 509 FPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
GAGFC++ND+A+AAR L G+VR+VL+VDLDVHQ
Sbjct: 122 RRQQGAGFCVLNDVAVAARTLQAEGLVRRVLVVDLDVHQ 160
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 78/199 (39%), Gaps = 58/199 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDGTA P +FT S+HC NYP +K DLD+ + DDAG
Sbjct: 151 VLVVDLDVHQGDGTADCLALSPDLFTLSIHCENNYPAQKIAGDLDIGLPDRLDDAG---- 206
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L R P ++ F+ F + G
Sbjct: 207 ---YLDVLRARLP----------------PLLDAFAPDLVFYNAG--------------- 232
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H+ R L L GL RD +V+ A + GI +A V
Sbjct: 233 --------------VDPHRDDR------LGRLCLTDDGLLARDRFVVAQARARGIALAAV 272
Query: 589 TGGGYCADIDQLAQRQTII 607
GGGY D+D LA+R ++
Sbjct: 273 IGGGYTHDVDALARRHALV 291
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY L+ LP +L F PDLV Y+AGVDPH+ D LG+L LTD G
Sbjct: 205 AGYLDVLRARLPPLLDAFAPDLVFYNAGVDPHRDDRLGRLCLTDDG 250
>gi|262277700|ref|ZP_06055493.1| histone deacetylase family protein [alpha proteobacterium HIMB114]
gi|262224803|gb|EEY75262.1| histone deacetylase family protein [alpha proteobacterium HIMB114]
Length = 300
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 59/201 (29%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWV 473
L + GDGTA IF+ D +VFT S+H +NYP +KQ S++D+ ++ G D L V
Sbjct: 156 LDVHQGDGTAKIFESDDSVFTVSIHSKKNYPSKKQKSNIDIELEDGIKDEE----YLNVV 211
Query: 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG 533
L Q+ E + + +F
Sbjct: 212 NQLLQKIEDFQFDFVF-------------------------------------------- 227
Query: 534 IVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
I +DVH R L L+ G+ R+ V++ IP+ V GGGY
Sbjct: 228 -----YIAGVDVHFEDR------LGKLNITETGIRKREELVINNFFKKNIPLCGVLGGGY 276
Query: 594 CADIDQLAQRQTIIHRAATHV 614
+ +QL +I+H +
Sbjct: 277 NHNFEQLVNLHSILHETCKKI 297
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LPII+ Y + +HRFP+ KF + L+R K I + EP ++S VH++
Sbjct: 2 LPIINHPDYVAQIGDDHRFPIKKFGELIK-LLRKKNIATTYNTFEPDEVSVPTLLNVHSE 60
Query: 91 EYVHKFFNGKTTEKEQKVTGF 111
EY++K N + E + GF
Sbjct: 61 EYINKINNLSLDKDEIRKLGF 81
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHAF + G G+C+ ND+A+A YL + +K+LI+DLDVHQ
Sbjct: 117 GSHHAFSNQGNGYCVFNDVAVATSYLKKKYKYKKILIIDLDVHQ 160
>gi|149928525|ref|ZP_01916756.1| Deacetylase, histone deacetylase family protein [Limnobacter sp.
MED105]
gi|149822764|gb|EDM82020.1| Deacetylase, histone deacetylase family protein [Limnobacter sp.
MED105]
Length = 197
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ I L + GDGTA I + D +VFTFSMH +NYPF+K+ SDLD+ + GT D
Sbjct: 36 VLVIDLDVHQGDGTAEILENDDSVFTFSMHGEKNYPFQKEQSDLDIELPDGTGD 89
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 203 EHLPGILAQ----FKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
EHL L Q F P+L++Y AG+D HQ D LGKL+L+D G
Sbjct: 94 EHLERALYQINQRFTPNLILYVAGLDVHQADRLGKLSLSDQG 135
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 540 IVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQ 599
+ LDVHQ R L LS G+ +RD VL A +PVA V GGY D+D
Sbjct: 115 VAGLDVHQADR------LGKLSLSDQGVLLRDQLVLQWAHKRQLPVAAVMAGGYFPDLDH 168
Query: 600 LAQRQ-TIIHRAATH 613
L Q +I R A +
Sbjct: 169 LTDLQLGVIKRLADY 183
>gi|226228541|ref|YP_002762647.1| histone deacetylase family protein [Gemmatimonas aurantiaca T-27]
gi|226091732|dbj|BAH40177.1| histone deacetylase family protein [Gemmatimonas aurantiaca T-27]
Length = 311
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMN 520
A R + L W +R+ ++ I L + + THHAFPD G GFC N
Sbjct: 74 AEQRRIGLPWSPSFVERAFRVVQGTIEASACALREGLAMNLAGGTHHAFPDRGEGFCTFN 133
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQ 547
D+A+A R L G V++V IVDLDVHQ
Sbjct: 134 DVAVAVRRLQAEGAVQRVAIVDLDVHQ 160
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 70/187 (37%), Gaps = 58/187 (31%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
+ L + G+GT F D VFTFSMH +N+PF K LDV ++ GT D
Sbjct: 154 VDLDVHQGNGTHGCFAGDEQVFTFSMHGAKNFPFHKVPGTLDVELEDGTGDEA------- 206
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+L LL+ P + R S PD L+
Sbjct: 207 -----------------YLALLQTHLPRVLRISR----PD-----------------LV- 227
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
V + D H+ R L L+ GL RD YV+ + GIPV G
Sbjct: 228 ------VYLAGADPHEGDR------LGRLALTFDGLMTRDRYVIASCREVGIPVCVTMSG 275
Query: 592 GYCADID 598
GY +ID
Sbjct: 276 GYGRNID 282
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ HLP +L +PDLV+Y AG DPH+ D LG+L LT G
Sbjct: 207 YLALLQTHLPRVLRISRPDLVVYLAGADPHEGDRLGRLALTFDG 250
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS----KQLIEPQQISESIAEL 86
L + + Y LP HRFPM K+ L+R+ V+ + ++ +PQ+ E
Sbjct: 2 LHLWSSASYAIDLPEGHRFPMDKYR-----LLREAVLAEGLVAPDRVHDPQRALEEDLRR 56
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VHT +YV + +G EQ+ G WS R
Sbjct: 57 VHTVDYVAQIRDGTLPAAEQRRIGLPWSPSFVER 90
>gi|440751264|ref|ZP_20930498.1| Putative histone deacetylase/AcuC/AphA family protein [Mariniradius
saccharolyticus AK6]
gi|436480128|gb|ELP36385.1| Putative histone deacetylase/AcuC/AphA family protein [Mariniradius
saccharolyticus AK6]
Length = 279
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G GFCL+ND+A++A YL+ + + KVL VDLDVHQ
Sbjct: 96 GTHHAYAERGEGFCLLNDIAISANYLLDNALANKVLAVDLDVHQ 139
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA +F+++ +VFTFSMH NYP K+ SDLD+ + T D
Sbjct: 130 VLAVDLDVHQGNGTAKLFEENTSVFTFSMHGAANYPMHKEKSDLDIGLPDKTGD 183
>gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum seropedicae SmR1]
gi|300073754|gb|ADJ63153.1| deacetylase protein [Herbaspirillum seropedicae SmR1]
Length = 331
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGFCL 518
A R + W + +RS R++G + R + E +N THHA+ DHGAGFC+
Sbjct: 86 AEQREIGFPWSPEMVERSR--RSSGATIAACRAAFSEGVAVNLAGGTHHAYGDHGAGFCV 143
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+AAR + +V IVDLDVHQ
Sbjct: 144 FNDAAIAARLMQAERRAARVAIVDLDVHQ 172
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 98/258 (37%), Gaps = 67/258 (25%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+++ + LPP HRFPM K+ ++R+ L E S+ L H +Y
Sbjct: 20 YSDHFVLPLPPGHRFPMVKYR-----MIREGAARTVPGLEFHEAMPASDGELALAHHPDY 74
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPV-------- 144
+ + G+ T EQ+ GF WS + R R T IA F + V
Sbjct: 75 IGRASRGELTAAEQREIGFPWSPEMVERSRRSSGAT--IAACRAAFSEGVAVNLAGGTHH 132
Query: 145 ----------FFDIAAVLADLICIAVYLTFFLQRRPVFFDI-----------AAVLA--D 181
F+ AA+ A L+ +RR I AA+LA D
Sbjct: 133 AYGDHGAGFCVFNDAAIAARLMQA--------ERRAARVAIVDLDVHQGNGTAAILARDD 184
Query: 182 LIHFMV--GINTQPVSGYQA-----------------TLKEHLPGILAQFKPDLVIYDAG 222
+ + G N P Q+ L++ L + +F P L+IY AG
Sbjct: 185 SVFTLSLHGQNNYPFEKEQSDLDVALPDGVGDEDYLCALQQALATLQQRFAPQLLIYLAG 244
Query: 223 VDPHQHDELGKLNLTDHG 240
DPH+ D LGK+ L+ G
Sbjct: 245 ADPHEGDRLGKMKLSLAG 262
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 401 MKSSHRALIMEI-GLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
M++ RA + I L + G+GTA I +D +VFT S+H NYPF K+ SDLDVA+ G
Sbjct: 154 MQAERRAARVAIVDLDVHQGNGTAAILARDDSVFTLSLHGQNNYPFEKEQSDLDVALPDG 213
Query: 460 TDD 462
D
Sbjct: 214 VGD 216
>gi|110636746|ref|YP_676953.1| deacetylase [Cytophaga hutchinsonii ATCC 33406]
gi|110279427|gb|ABG57613.1| deacetylase [Cytophaga hutchinsonii ATCC 33406]
Length = 300
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ +HG GFCL ND+ LAA YL+ + + +VL+VDLDVHQ
Sbjct: 117 GTHHAYKEHGEGFCLYNDIILAADYLLANKLAHQVLVVDLDVHQ 160
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 78/214 (36%), Gaps = 60/214 (28%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K +H+ L+++ L + G+GTA + + + +FTFSMH NYP K+ SDLD+ + D
Sbjct: 146 KLAHQVLVVD--LDVHQGNGTAKMAEGNTQIFTFSMHGASNYPAHKEQSDLDIGL---PD 200
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
G++ ++ L + ++ I+ H F G
Sbjct: 201 KTGDK----AYLNLLEENLSRL----------------IDTLQPDHIFFQSG-------- 232
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
VD+ + L LS G RD VLD
Sbjct: 233 -------------------VDV--------LETDKLGKLSLSREGCKNRDRMVLDRCKKY 265
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
IPV GGGY I + + R A +Y
Sbjct: 266 KIPVTISLGGGYSEKIIDIVEAHCNTFRLAQELY 299
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 92/246 (37%), Gaps = 49/246 (19%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P HRFPM K+ LV + I +S L P +I+ YVHK
Sbjct: 10 YNHPVPEGHRFPMLKYDLIAEQLVYEGTITES-NLTTPVRIASEDLLRSQDATYVHKLNT 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA-------- 150
+ E + TGFE +A L R T A++ + + +IA
Sbjct: 69 LSLSPSEIRKTGFELTAELVYREEVIMQGTIDSALH----ALKHGIGMNIAGGTHHAYKE 124
Query: 151 ------VLADLICIAVY-LTFFLQRRPVFFDIAAVLADLIHFMVGINTQ----------- 192
+ D+I A Y L L + + D+ + M NTQ
Sbjct: 125 HGEGFCLYNDIILAADYLLANKLAHQVLVVDLDVHQGNGTAKMAEGNTQIFTFSMHGASN 184
Query: 193 -PVSGYQATL-----------------KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
P Q+ L +E+L ++ +PD + + +GVD + D+LGKL
Sbjct: 185 YPAHKEQSDLDIGLPDKTGDKAYLNLLEENLSRLIDTLQPDHIFFQSGVDVLETDKLGKL 244
Query: 235 NLTDHG 240
+L+ G
Sbjct: 245 SLSREG 250
>gi|409099281|ref|ZP_11219305.1| histone deacetylase [Pedobacter agri PB92]
Length = 300
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAID--VGTDD 462
I+ + L + G+GTA IF +P VFTFSMH +N+PFRK+ SDLDVA++ +G D+
Sbjct: 151 ILIVDLDVHQGNGTAEIFRNEPRVFTFSMHGDKNFPFRKEISDLDVALEDHIGDDE 206
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THH+ + G GFCL+ND A+AA YLI +V ++LIVDLDVHQ
Sbjct: 117 GTHHSGSNWGEGFCLLNDQAIAANYLINKNLVDRILIVDLDVHQ 160
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM K+ L+ + ID++ L P + E I L H Y +
Sbjct: 10 YAHPLPEGHRFPMLKYELIPGQLLHEGTIDQN-NLFSPNLVDEDIILLTHDANYWRQLRE 68
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
KEQ+ GF +A L R
Sbjct: 69 LTLPPKEQRRIGFPLNAQLVER 90
>gi|332527742|ref|ZP_08403783.1| hypothetical protein RBXJA2T_17377 [Rubrivivax benzoatilyticus JA2]
gi|332112140|gb|EGJ12116.1| hypothetical protein RBXJA2T_17377 [Rubrivivax benzoatilyticus JA2]
Length = 314
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 405 HRA--LIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
HRA ++ + L + G+GTA IF D +VFT S+H +N+PFRK+ SDLDV + G D
Sbjct: 149 HRAGLQVLVVDLDVHQGNGTASIFRDDASVFTLSLHGAKNFPFRKEASDLDVELPDGCAD 208
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP 498
A AL LS+ ++R F L +DP
Sbjct: 209 A-EYLAALD--AALSEAWRRLRTPPGLAFYLAGADP 241
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL-IEPQ-QISESIAELVHTKEY 92
H++++ LP H FPM K+ +L+R+ V + +EP S+ L H +
Sbjct: 5 HSDRFVLPLPAGHPFPMHKY-----HLLREAVAATLPAIRVEPAPAASDGELALAHEPAW 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+ +G T+ +Q+ GF WS +A R R
Sbjct: 60 IDAVAHGTTSAAQQREIGFPWSEAMAERAR 89
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 9/51 (17%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLI-------RHGIVRKVLIVDLDVHQ 547
THHA+ G+G+C+ ND+A+AAR + R G+ +VL+VDLDVHQ
Sbjct: 116 GTHHAYAHKGSGYCVFNDVAVAARLMQAEWYRVHRAGL--QVLVVDLDVHQ 164
>gi|108759310|ref|YP_629630.1| histone deacetylase [Myxococcus xanthus DK 1622]
gi|108463190|gb|ABF88375.1| histone deacetylase family protein [Myxococcus xanthus DK 1622]
Length = 299
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 430 PAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRTVALTWVTFLSQRSEKMRNNGI 488
P T S C R R A+ GT DA R + W L +R +
Sbjct: 39 PESLTESTPCPRQDLARVHTPRYLDALSQGTLTDAEQRRLGFPWSPELMRRFSAAVAGTL 98
Query: 489 FLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
L D S THH FPDHG GFC+ ND+A+A R L +R+ ++VDLDVH
Sbjct: 99 DAARAALQDGIGGNLSGGTHHGFPDHGEGFCVFNDIAVAIRVLQASRDIRRAVVVDLDVH 158
Query: 547 QHTRSIPV 554
Q + V
Sbjct: 159 QGNGTAAV 166
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIA------EL 86
+ H++ YE LPP HRFPM K+ L+R+ ++++ ++ P+ ++ES
Sbjct: 3 VFHSDSYEVPLPPGHRFPMEKYR-----LLREALLERG--VLTPESLTESTPCPRQDLAR 55
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VHT Y+ G T+ EQ+ GF WS L R
Sbjct: 56 VHTPRYLDALSQGTLTDAEQRRLGFPWSPELMRR 89
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RA++++ L + G+GTA +F D +VFTFSMH N+PFRKQ S LDV + GT DA
Sbjct: 149 RAVVVD--LDVHQGNGTAAVFTGDDSVFTFSMHGENNFPFRKQPSHLDVGLPDGTGDA 204
>gi|337280109|ref|YP_004619581.1| histone deacetylase [Ramlibacter tataouinensis TTB310]
gi|334731186|gb|AEG93562.1| Histone deacetylase-like protein [Ramlibacter tataouinensis TTB310]
Length = 309
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 76/206 (36%), Gaps = 58/206 (28%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
+ L + G+GTA IF DP VFT S+H +N+PFRK+ SDLDV + G D
Sbjct: 156 VDLDVHQGNGTARIFHGDPTVFTLSLHGQKNFPFRKEPSDLDVDLPDGCGDD-------- 207
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+LS G L R DP
Sbjct: 208 --EYLSAL------EGALDELDRRFDP--------------------------------- 226
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
G+V + + D H+ R L L GL RD V D A G+P+A G
Sbjct: 227 -GLV--IYLAGADPHEGDR------LGRLKLTWDGLEARDRRVFDWAWQRGVPLAFAMAG 277
Query: 592 GYCADIDQLAQRQTIIHRAATHVYKE 617
GY I+ Q Q R A ++
Sbjct: 278 GYGTRIEDTVQVQVNTFRVAVQYWRR 303
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV--H 88
+ + + ++ LPP HRFPM+K+ L+RD++ D+ + Q + S EL H
Sbjct: 1 MQVFYATQFVLPLPPGHRFPMAKYQ-----LLRDRLADELPGIRLAQALPASDGELALAH 55
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
T Y+ +G + Q+ GF WS +A R R
Sbjct: 56 TPGYIQAISDGSVDPRIQREIGFPWSPAMAERAR 89
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + W +++R+ + I D + THHA+ D G GFC+ ND
Sbjct: 73 QREIGFPWSPAMAERARRSVGATISACRAAFQDGVAANIAGGTHHAYADKGGGFCVFNDA 132
Query: 523 ALAARYL-IRHGIVR----KVLIVDLDVHQ 547
A+A+R + G R +V IVDLDVHQ
Sbjct: 133 AVASRLMQAEWGRQRAKPLRVAIVDLDVHQ 162
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + L+ L + +F P LVIY AG DPH+ D LG+L LT G
Sbjct: 209 YLSALEGALDELDRRFDPGLVIYLAGADPHEGDRLGRLKLTWDG 252
>gi|392551183|ref|ZP_10298320.1| histone deacetylase superfamily protein [Pseudoalteromonas spongiae
UST010723-006]
Length = 298
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 36/42 (85%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+FP+ G+GFC+ ND+ +AAR+L+ + +V KV+I+DLDVHQ
Sbjct: 120 HHSFPNFGSGFCIFNDLVIAARHLLDNNLVSKVVILDLDVHQ 161
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 42/268 (15%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
+PI + Y +LP NHRFP+ K+ + ++ ++ + + + I P++ S VH
Sbjct: 3 IPIFYHPSYSSLSLPDNHRFPIEKYQLLYQFIKQE--LAEQFRFITPEKASLDDISKVHC 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTD----------PVPTHVIAVYLPFFL 139
+V +F G K + GF WS L R + TH+ + +
Sbjct: 61 PIFVQQFVTGTLEPKAIRKMGFPWSPQLVERTLYSIGASIQGAKLALETHIASQISGGYH 120
Query: 140 QRRPVFFDIAAVLADLICIAVYL-TFFLQRRPVFFDI-------AAVLADLIHFMVGINT 191
P F + DL+ A +L L + V D+ +AV A + ++ I+
Sbjct: 121 HSFPNFGSGFCIFNDLVIAARHLLDNNLVSKVVILDLDVHQGDGSAVCAQAMDDIITISL 180
Query: 192 QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGEC-----ISSS 246
+ A K+H YD ++ H +D+ + L +C +
Sbjct: 181 HCEQNFPAK-KQHSD------------YDFTLNKHANDQEYQTMLQ---QCLLTLLVEQP 224
Query: 247 ARISSEAGVDPHQHDELGKLNLTDHGVK 274
+ AG D + DELG N++ G+K
Sbjct: 225 DIVLYNAGADIYSGDELGYFNVSLAGLK 252
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+ L + GDG+A + T S+HC +N+P +KQ SD D ++ +D +T+
Sbjct: 155 LDLDVHQGDGSAVCAQAMDDIITISLHCEQNFPAKKQHSDYDFTLNKHANDQEYQTM 211
>gi|409405465|ref|ZP_11253927.1| deacetylase [Herbaspirillum sp. GW103]
gi|386434014|gb|EIJ46839.1| deacetylase [Herbaspirillum sp. GW103]
Length = 282
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGFCL 518
A R + W + +RS R++G + R + E +N THHA+ DHGAGFC+
Sbjct: 51 AEQREIGFPWSPQMVERSR--RSSGATIAACRAAFSEGLAVNLAGGTHHAYADHGAGFCV 108
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPGL----YMRDY 572
ND A+AAR + +V IVDLDVHQ T SI +V + + G + ++
Sbjct: 109 FNDAAIAARLMQAERRAARVAIVDLDVHQGNGTASILARDESVFTLSLHGQNNYPFEKEQ 168
Query: 573 YVLDTAISAGI 583
LD A+ G+
Sbjct: 169 SDLDVALPDGV 179
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 401 MKSSHRALIMEI-GLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
M++ RA + I L + G+GTA I +D +VFT S+H NYPF K+ SDLDVA+ G
Sbjct: 119 MQAERRAARVAIVDLDVHQGNGTASILARDESVFTLSLHGQNNYPFEKEQSDLDVALPDG 178
Query: 460 TDDA 463
DA
Sbjct: 179 VGDA 182
>gi|449134933|ref|ZP_21770397.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
europaea 6C]
gi|448886412|gb|EMB16819.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
europaea 6C]
Length = 305
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 107/266 (40%), Gaps = 69/266 (25%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVID----KSKQLIEPQQISESIAEL 86
+ + +T+ ++ LP HRFPM+K+ L+R ++++ + LI PQ ++
Sbjct: 1 MRLYYTDHFDLPLPDGHRFPMTKYR-----LLRQRIVESDHHRDDALIVPQAATDEQLLH 55
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFF 146
HT +YV + +G T++E + GF WS + R R T A R +
Sbjct: 56 CHTPDYVQRVQSGTLTKQEIRRIGFPWSEKMVERSRRSTGATISAA--------RAALEE 107
Query: 147 DIAAVLAD-------------------LICIAVYLTFFLQRRPVFFDI--------AAVL 179
++A LA + I + L +R D+ A++L
Sbjct: 108 GVSANLAGGTHHAFAGEGEGYCVFNDAAVAIRTLQSEGLIQRATIIDLDVHQGNGTASIL 167
Query: 180 ADLIHFMV----GINTQPVSGYQATLKEHLP-------------GILAQFKP-------- 214
D+ G+ P+ + L LP +LA+ +
Sbjct: 168 KDVPSVFTCSVHGVKNFPLRKMPSDLDVSLPDGTGDDDYCDALRSVLAKLEKHQSDSGRF 227
Query: 215 DLVIYDAGVDPHQHDELGKLNLTDHG 240
DLVIY AG DP ++D LG+L+LT G
Sbjct: 228 DLVIYLAGADPFKNDRLGRLSLTMEG 253
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + W + +RS + I L + + THHAF G G+C+ ND A
Sbjct: 76 RRIGFPWSEKMVERSRRSTGATISAARAALEEGVSANLAGGTHHAFAGEGEGYCVFNDAA 135
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+A R L G++++ I+DLDVHQ
Sbjct: 136 VAIRTLQSEGLIQRATIIDLDVHQ 159
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA I P+VFT S+H +N+P RK SDLDV++ GT D
Sbjct: 153 IDLDVHQGNGTASILKDVPSVFTCSVHGVKNFPLRKMPSDLDVSLPDGTGD 203
>gi|319792622|ref|YP_004154262.1| histone deacetylase [Variovorax paradoxus EPS]
gi|315595085|gb|ADU36151.1| Histone deacetylase [Variovorax paradoxus EPS]
Length = 311
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I L + G+GTA IF DP+VFT SMH +N+PFRK+ SDLDV + G DA
Sbjct: 158 IDLDVHQGNGTASIFRNDPSVFTLSMHGQKNFPFRKEASDLDVELPDGCGDA 209
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLI----RHGIVRKVLIVDLDVHQHTRSIPV----P 555
THHA+ D G GFC+ ND A+AAR + R G + KV ++DLDVHQ + + P
Sbjct: 117 GTHHAYADKGGGFCVFNDAAVAARLMQAEHGRTGRLLKVAVIDLDVHQGNGTASIFRNDP 176
Query: 556 SLTVLS 561
S+ LS
Sbjct: 177 SVFTLS 182
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 34 IHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKE 91
++ ++ LPP HRFPMS+++ L+RD++ + + ++ + + S+ L HT +
Sbjct: 7 FYSGQFVLPLPPGHRFPMSRYA-----LLRDRLEEHLPAVEMDQAPRASDGELALAHTPQ 61
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
++ +G + + + GF WS + R R
Sbjct: 62 WIAAINDGSVSPQAMREIGFPWSEAMVERSR 92
>gi|327405255|ref|YP_004346093.1| Histone deacetylase [Fluviicola taffensis DSM 16823]
gi|327320763|gb|AEA45255.1| Histone deacetylase [Fluviicola taffensis DSM 16823]
Length = 302
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 9/68 (13%)
Query: 480 SEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
+E++ N GI L + THHA+ + G GFCL+ND A+AA++L+ + +++L
Sbjct: 103 AERVENGGIALNIAG---------GTHHAYTNRGEGFCLLNDQAIAAQWLLDEQLFKRIL 153
Query: 540 IVDLDVHQ 547
IVDLDVHQ
Sbjct: 154 IVDLDVHQ 161
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P HRFPM K+ + L+ + +++++ +EP + IA VHTKEY+ K N
Sbjct: 11 YIHAVPSTHRFPMEKYGLIYEQLLYEGILEEA-HFLEPNLLDLKIASKVHTKEYLTKLVN 69
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
T +EQ+V+GF + L R
Sbjct: 70 LNCTSREQRVSGFVHNQQLIER 91
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF +P VFTFSMH NYP K+ SD D+ ++ D
Sbjct: 152 ILIVDLDVHQGNGTAEIFKNNPNVFTFSMHGKANYPMHKEESDRDIHLETNLKD 205
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y LK L IL F PD + Y GVD + D+LGKL+++ +G
Sbjct: 208 YLNILKSELTAILDSFSPDFIFYQCGVDILETDKLGKLSVSQNG 251
>gi|163847420|ref|YP_001635464.1| histone deacetylase superfamily protein [Chloroflexus aurantiacus
J-10-fl]
gi|222525269|ref|YP_002569740.1| histone deacetylase superfamily protein [Chloroflexus sp. Y-400-fl]
gi|163668709|gb|ABY35075.1| histone deacetylase superfamily [Chloroflexus aurantiacus J-10-fl]
gi|222449148|gb|ACM53414.1| histone deacetylase superfamily [Chloroflexus sp. Y-400-fl]
Length = 298
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 401 MKSSHRA-LIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
M+S R I I + GDGTA IF DP VFTFS+H N+PFRKQ SDLD+A+
Sbjct: 141 MQSEGRVQRIAIIDCDVHQGDGTAAIFTGDPTVFTFSIHGAHNFPFRKQQSDLDIALPDA 200
Query: 460 TDDAGNRTVALTW 472
T D AL W
Sbjct: 201 TGDTAYLD-ALEW 212
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCLMNDMA 523
R + W + +RS + I + LS+ +N THHAF D GAG+C+ ND A
Sbjct: 76 RRIGFPWSPQMVERSRRSAGATIAACRVALSEGVGVNLAGGTHHAFADAGAGYCVFNDAA 135
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+AAR + G V+++ I+D DVHQ
Sbjct: 136 VAARAMQSEGRVQRIAIIDCDVHQ 159
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQI----SESIAEL--VH 88
+++ + LPP HRFPM K++ L+R++V+ S+ ++ P+++ SI EL H
Sbjct: 5 YSDTFVLPLPPGHRFPMEKYA-----LLRERVL--SEGIVTPERLHVPEPASITELCRAH 57
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
YV + NG T E + GF WS + R R
Sbjct: 58 DANYVERVINGHLTSAEIRRIGFPWSPQMVERSR 91
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L+ + + A +PDLVIY AG DP+ D LG+L+LT G
Sbjct: 204 TAYLDALEWGVRQVFAIARPDLVIYLAGADPYYDDRLGRLSLTKAG 249
>gi|359786041|ref|ZP_09289183.1| histone deacetylase [Halomonas sp. GFAJ-1]
gi|359296636|gb|EHK60882.1| histone deacetylase [Halomonas sp. GFAJ-1]
Length = 304
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L ++H Y LP NH FPM KF + L+ ++ + + + P+ + VHT+
Sbjct: 3 LTVVHHPGYTIDLPANHPFPMEKF-RLLRQLLGEQSLACPIEWLTPEPAPINTLARVHTR 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTD 124
+Y++ F G+ ++ +GF WS L RVR +
Sbjct: 62 DYLNAFLQGRLARAAERRSGFAWSEALVERVRLE 95
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ + + GDGTA +F P VFTFSMH RN+P RK SDLDVA+ G D
Sbjct: 151 RVLIVDCDV--HQGDGTARLFANVPGVFTFSMHAARNFPARKATSDLDVALPTGMGDDAY 208
Query: 466 RTVALTWV 473
+W+
Sbjct: 209 LAELASWL 216
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L LPGILA ++PD V+YDAGVD HQ D LG L L++ G
Sbjct: 208 YLAELASWLPGILAAYQPDAVLYDAGVDVHQDDRLGYLALSNQG 251
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQ 602
+DVHQ R L L+ GLY RD+YVL A IPVA V GGGY DI LA
Sbjct: 234 VDVHQDDR------LGYLALSNQGLYARDHYVLSCCHDADIPVAAVIGGGYDRDILALAG 287
Query: 603 RQTIIHRAATHV 614
R +HRAA V
Sbjct: 288 RHAQLHRAAADV 299
>gi|34497781|ref|NP_901996.1| histone deacetylase/AcuC/AphA family protein [Chromobacterium
violaceum ATCC 12472]
gi|34103637|gb|AAQ59998.1| probable histone deacetylase/AcuC/AphA family protein
[Chromobacterium violaceum ATCC 12472]
Length = 302
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 452 LDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLR---LSDPEIN-RFSTHH 507
+D ++ D R + L W L++RS R+ G + R L +N THH
Sbjct: 59 VDAVLNGTLDARAQREIGLPWSPELAERSR--RSVGATVAASRSALLEGCGVNLAGGTHH 116
Query: 508 AFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
A + G+GFC+ ND+A+A+ L+ VR+VLIVDLDVHQ
Sbjct: 117 AGRERGSGFCMFNDIAVASMLLLAEARVRRVLIVDLDVHQ 156
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 99/258 (38%), Gaps = 64/258 (24%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK-- 90
I T+++ LP HRFP K+ L+ ++V + + +E + + EL+H
Sbjct: 3 IYRTDQFPLPLPAGHRFPAEKYR-----LLAEQVSAFAAERMETAPAA-TRGELIHAHHP 56
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPV------ 144
+YV NG + Q+ G WS LA R R T +A L+ V
Sbjct: 57 DYVDAVLNGTLDARAQREIGLPWSPELAERSRRSVGAT--VAASRSALLEGCGVNLAGGT 114
Query: 145 -------------FFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLAD-- 181
F DIA +A ++ +A RR + D+ AA+ AD
Sbjct: 115 HHAGRERGSGFCMFNDIA--VASMLLLAEARV----RRVLIVDLDVHQGDGTAAIAADEP 168
Query: 182 --LIHFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAG 222
M G P + Y L LP + A+ +PDLV Y AG
Sbjct: 169 RIFTFSMHGARNFPFRRVDSDWDIDLPDGTEDAAYLDALARALPELFARARPDLVCYLAG 228
Query: 223 VDPHQHDELGKLNLTDHG 240
DP+ D LG+L L+ G
Sbjct: 229 ADPYHGDRLGRLALSKQG 246
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
++ + L + GDGTA I +P +FTFSMH RN+PFR+ SD D+ + GT+DA
Sbjct: 147 VLIVDLDVHQGDGTAAIAADEPRIFTFSMHGARNFPFRRVDSDWDIDLPDGTEDA 201
>gi|254441358|ref|ZP_05054851.1| Histone deacetylase family, putative [Octadecabacter antarcticus
307]
gi|198251436|gb|EDY75751.1| Histone deacetylase family, putative [Octadecabacter antarcticus
307]
Length = 301
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
THHA HG+GFC+ ND+A A LI HG+V VLI+DLDVHQ +I +
Sbjct: 119 GTHHAHYSHGSGFCVFNDLAFTALNLIEHGMVESVLILDLDVHQGDGTIDI 169
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL--IEPQQISESIAE 85
+ +P+++ + Y+ +P HRF +KFSK +YL R D S QL I + +
Sbjct: 1 MSQIPVVYNDFYDICVPLTHRFNGTKFSKLVHYLQRS---DFSNQLDFIHSSPVRYEDIK 57
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
H +YV + G E + + L R
Sbjct: 58 RAHANDYVQRVATGALLRNEVRQINLPINTQLIKR 92
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + GDGT I ++T S+HC +N+PF+K+ DV +D +D
Sbjct: 153 VLILDLDVHQGDGTIDICHGKRGIYTCSLHCEQNFPFQKRQGTRDVPLDCHLED 206
>gi|254452992|ref|ZP_05066429.1| histone deacetylase superfamily [Octadecabacter arcticus 238]
gi|198267398|gb|EDY91668.1| histone deacetylase superfamily [Octadecabacter arcticus 238]
Length = 301
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
THHA HG+GFC+ ND+A A LI HG+V VLI+DLDVHQ +I +
Sbjct: 119 GTHHAHYSHGSGFCVFNDLAFTALNLIEHGMVETVLILDLDVHQGDGTIDI 169
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL--IEPQQISESIAE 85
+ +P+++ + Y+ +PP HRF +KFSK N+L R D SKQL I + +
Sbjct: 1 MSQIPVVYNDAYDFHVPPTHRFNGTKFSKLVNHLQRS---DFSKQLDFIHSSPVRYEDIK 57
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
H +YV + G +E + + L R
Sbjct: 58 RAHANDYVQRVATGALLREEVRQINLPINTQLIKR 92
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 557 LTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
L L + G++ RD VL+ + IP+ATV GGGY +AQR I RAA V+
Sbjct: 243 LGNLDLTLEGIFKRDCIVLEHFKNCNIPIATVIGGGYSPSDTDIAQRHLSIFRAAIDVF 301
>gi|326334871|ref|ZP_08201072.1| histone deacetylase [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692908|gb|EGD34846.1| histone deacetylase [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 299
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLT 558
THHA+ + G GFC++ND A+AA YL+++ +++LI+DLDVHQ + + S T
Sbjct: 115 GTHHAYSNRGEGFCMLNDQAIAAAYLLQYRKAKRILIIDLDVHQGNGTAEIFSHT 169
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF P VFTFSMH NYPF K+ SD+D+ ++ T D
Sbjct: 149 ILIIDLDVHQGNGTAEIFSHTPEVFTFSMHAKGNYPFVKEQSDMDIELEDKTTD 202
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 106/254 (41%), Gaps = 33/254 (12%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y +P NHRFPM K++ L+ + V+ K + P+++S + A LVH+ +YV F
Sbjct: 8 YTYPVPENHRFPMEKYALLHEQLLWEGVVQK-QDFFSPKKVSFASATLVHSPQYVKDFIG 66
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA-------- 150
E+ + GF S L R T T A+Y + F+IA
Sbjct: 67 LTLDERTRIHIGFIQSQQLVDRELTLVQGTIDGALYAL----EDGIAFNIAGGTHHAYSN 122
Query: 151 ------VLADLICIAVYLTFFLQRRPVFFDIAAVLADL-IHFMVGI-----NTQPVSGYQ 198
+L D A YL + + + + ++ DL +H G +T V +
Sbjct: 123 RGEGFCMLNDQAIAAAYLLQYRKAKRI------LIIDLDVHQGNGTAEIFSHTPEVFTFS 176
Query: 199 ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPH 258
K + P + Q D+ + D D + L K LT E + ++GVD
Sbjct: 177 MHAKGNYPFVKEQSDMDIELEDKTTDT-VYLSLLKEALTKLFEK-HQPDFVFYQSGVDVL 234
Query: 259 QHDELGKLNLTDHG 272
+ D+LGKLNL+ G
Sbjct: 235 ESDKLGKLNLSIEG 248
>gi|78185032|ref|YP_377467.1| histone deacetylase/AcuC/AphA family protein [Synechococcus sp.
CC9902]
gi|78169326|gb|ABB26423.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. CC9902]
Length = 305
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L + L QR+ + L L N + THHA PD G+GFC+ ND
Sbjct: 77 QRRIGLPATSALVQRTWLAVGGTLLTARLALRYGLANHLAGGTHHAHPDFGSGFCIFNDC 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+AA+ L+R V ++LIVDLDVHQ
Sbjct: 137 AVAAKVLLRRREVERILIVDLDVHQ 161
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91
P+++ +Y LP HRFPM+KF K + L+ D+ + + KQ+ P I+ E +H +
Sbjct: 4 PVVYHPRYSAELPSTHRFPMAKF-KLLHQLLLDQGLIERKQIHVPLSIARRDLEEIHPRR 62
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
Y F + T EQ+ G ++ L R
Sbjct: 63 YHETFSRDQLTRPEQRRIGLPATSALVQR 91
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A + + LP +L + KP LV+++AGVDPH+ D LG+L+L+D G
Sbjct: 208 YLAAIGDQLPNVLDELKPQLVLFNAGVDPHRDDRLGRLHLSDDG 251
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + GDG+A F D V TFS+H N+P RK SD+D+ + GT+D
Sbjct: 152 ILIVDLDVHQGDGSAACFQTDERVTTFSVHAASNFPLRKVNSDIDIPLPDGTEDG 206
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
GL MRD VLD + IPVATV GGGY ++ L +R I+ RAA
Sbjct: 251 GLLMRDRLVLDACLRRKIPVATVIGGGYDT-LEPLVRRHAIVFRAAA 296
>gi|352096237|ref|ZP_08957117.1| Histone deacetylase [Synechococcus sp. WH 8016]
gi|351676931|gb|EHA60082.1| Histone deacetylase [Synechococcus sp. WH 8016]
Length = 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D+G+GFC+ ND+A++AR L+ G + +++IVDLDVHQ
Sbjct: 96 GTHHAFSDYGSGFCIFNDIAVSARVLLDEGRLERLMIVDLDVHQ 139
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 185 FMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
F G+ Q GY A + E LP +L +FKP+LV+Y+AGVDPH+ D LG+L L+D G
Sbjct: 177 FEDGVEDQ---GYLAAVGEVLPSLLDRFKPELVLYNAGVDPHRDDRLGRLCLSDMG 229
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 86/214 (40%), Gaps = 63/214 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M + L + GD TA IF DP VFTFS H N+P RKQ SD D+ + G +D G
Sbjct: 130 LMIVDLDVHQGDATAVIFADDPRVFTFSAHAASNFPSRKQSSDCDLPFEDGVEDQG---- 185
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLMNDMALAAR 527
+L+ E + + LL PE+ ++ D G ++DM L R
Sbjct: 186 ------YLAAVGEVLPS------LLDRFKPELVLYNAGVDPHRDDRLGRLCLSDMGLLQR 233
Query: 528 -YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVA 586
+L+ +R R IPV A
Sbjct: 234 DHLVFDACLR-------------RQIPV-------------------------------A 249
Query: 587 TVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
+V GGGY D+D L +R +++ RAA + GL
Sbjct: 250 SVIGGGY-DDLDPLVRRHSLVFRAAADQARLHGL 282
>gi|333892281|ref|YP_004466156.1| histone deacetylase superfamily protein [Alteromonas sp. SN2]
gi|332992299|gb|AEF02354.1| histone deacetylase superfamily protein [Alteromonas sp. SN2]
Length = 298
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 92/248 (37%), Gaps = 42/248 (16%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + +LP HRFP+ K+ N L V D P I+E E K+Y
Sbjct: 5 VFHPIYSQLSLPERHRFPIDKYQGIRNALSSHGVADSVFHTPSPLAITE--LECHFDKDY 62
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVY-------LPFFLQRRPVF 145
V + +G +K + GF WS L R T T + A L F
Sbjct: 63 VQQLTSGTLDKKAMRRIGFPWSDQLIERTLTAVAGTCLTAELAIKHGKALNLTGGYHHAF 122
Query: 146 FDIAA---VLADLICIAVYLTFFLQRRPVF---FDI--AAVLADLIHFMVGINTQPVSG- 196
D + + DL A + F V FD+ A L + I T V G
Sbjct: 123 SDFGSGFCLFNDLFLAAKAMQKFSGIDNVLIIDFDVHQGDGTAKLTQYDNSIFTVSVHGE 182
Query: 197 ------------------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELG 232
Y ++E L + QF+ D +IYDAGVD H +D+LG
Sbjct: 183 KNFPYRKQHSNIDIGMAKGCEDDEYLNAVQETLAMVAMQFQADAIIYDAGVDIHINDDLG 242
Query: 233 KLNLTDHG 240
LN+T G
Sbjct: 243 LLNITTEG 250
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFCL ND+ LAA+ + + + VLI+D DVHQ
Sbjct: 119 HHAFSDFGSGFCLFNDLFLAAKAMQKFSGIDNVLIIDFDVHQ 160
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD-----A 463
++ I + GDGTA + D ++FT S+H +N+P+RKQ S++D+ + G +D A
Sbjct: 151 VLIIDFDVHQGDGTAKLTQYDNSIFTVSVHGEKNFPYRKQHSNIDIGMAKGCEDDEYLNA 210
Query: 464 GNRTVALTWVTF 475
T+A+ + F
Sbjct: 211 VQETLAMVAMQF 222
>gi|257453627|ref|ZP_05618917.1| histone deacetylase family protein [Enhydrobacter aerosaccus SK60]
gi|257449085|gb|EEV24038.1| histone deacetylase family protein [Enhydrobacter aerosaccus SK60]
Length = 300
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA + +P VFTFSMH +NYPFRKQ SDLD+ + T D
Sbjct: 151 ILTVDLDVHQGNGTAHLMANEPRVFTFSMHGAKNYPFRKQASDLDIDLPNETGD 204
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF DHG GFC+ ND+A+A+ L+ G ++L VDLDVHQ
Sbjct: 117 GTHHAFADHGEGFCVFNDVAVASNLLLARGQATQILTVDLDVHQ 160
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 105/267 (39%), Gaps = 50/267 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+ + +++ ++ +P HRFPM K+ L+ + + ++ PQ++SE HT+
Sbjct: 2 IKVAYSDIFKYDVPERHRFPMQKYPMIAARLLAEGTLTQAN-FFAPQRLSEDEILTTHTQ 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA 150
Y K+ + GFE + L R R T+ A+ F ++ V +IA
Sbjct: 61 RYWQHLKQQTLPAKDARAIGFEMTPRLVERERVIAHGTYECAL----FAKQFGVALNIAG 116
Query: 151 ----VLAD---LICI----AVYLTFFLQRR------PVFFDI------AAVLAD----LI 183
AD C+ AV L R V D+ A ++A+
Sbjct: 117 GTHHAFADHGEGFCVFNDVAVASNLLLARGQATQILTVDLDVHQGNGTAHLMANEPRVFT 176
Query: 184 HFMVGINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
M G P Y A L + LP ++ + KPD++ Y + VD
Sbjct: 177 FSMHGAKNYPFRKQASDLDIDLPNETGDEAYLAILMDTLPALITKVKPDMLFYQSAVDVL 236
Query: 227 QHDELGKLNLTDHGECISSSARISSEA 253
D+LGKL LT G C A + S+A
Sbjct: 237 STDKLGKLALTRDG-CAKRDAFVFSQA 262
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 552 IPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
+ L L+ G RD +V A + GIPVA V GGGY +ID + + R A
Sbjct: 236 LSTDKLGKLALTRDGCAKRDAFVFSQAKAHGIPVAVVMGGGYSENIDDVVEAHCNTFRIA 295
Query: 612 THVYK 616
+Y+
Sbjct: 296 KRLYE 300
>gi|383451822|ref|YP_005358543.1| Histone deacetylase family protein [Flavobacterium indicum
GPTSA100-9]
gi|380503444|emb|CCG54486.1| Histone deacetylase family protein [Flavobacterium indicum
GPTSA100-9]
Length = 300
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G FCL+ND A+AA+YL+ + +++LI+DLDVHQ
Sbjct: 117 GTHHAYSNRGEAFCLLNDQAIAAQYLLNQKLAKQILIIDLDVHQ 160
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+GTA IF +P VFTFS+H NYPF+K+ SDLD+A+ T DA
Sbjct: 151 ILIIDLDVHQGNGTAEIFQNNPRVFTFSVHGKSNYPFKKEQSDLDIALPDQTSDA 205
>gi|91788947|ref|YP_549899.1| histone deacetylase superfamily protein [Polaromonas sp. JS666]
gi|91698172|gb|ABE45001.1| histone deacetylase superfamily [Polaromonas sp. JS666]
Length = 337
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I L + G+GTA IF DP+VFT S+H +N+PFRK+ SDLDV + G DA
Sbjct: 187 IDLDVHQGNGTAHIFANDPSVFTLSLHGQKNFPFRKEASDLDVELPDGCTDA 238
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK--QLIEPQQISESIAELVH 88
L + + + LPP HRFPM K+ L+RD++I + Q+ + S+ LVH
Sbjct: 24 LQAFYADNFVLPLPPGHRFPMGKYK-----LLRDRLISELPHVQMAQAPAASDGELALVH 78
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
T Y+ +G Q+ GF WS G+A R R
Sbjct: 79 TPAYIEAITHGSLPPAAQREIGFPWSPGMAERAR 112
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINR---------FSTHHAFPDHG 513
A R + W +++R+ R+ G + R++ R THHA+ G
Sbjct: 94 AAQREIGFPWSPGMAERAR--RSAGATVAAARVALGTGTRPQGVAANMAGGTHHAYAHKG 151
Query: 514 AGFCLMNDMALAARYLI-----RHGIVRK---VLIVDLDVHQ 547
+GFC+ ND A+ AR + RH RK V ++DLDVHQ
Sbjct: 152 SGFCVFNDSAVTARLMQAEWGRRHRPDRKPLQVAVIDLDVHQ 193
>gi|297184109|gb|ADI20228.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 300
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHG 513
+D D R + W L +R + I + + +N THHAF D G
Sbjct: 67 LDGSIDGKAQRKIGFPWSAQLIERERTIGQGTIDNTSFAIENGCSLNIAGGTHHAFYDRG 126
Query: 514 AGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
GFC++ND+ LAA Y + + V ++L+VDLDVHQ
Sbjct: 127 EGFCMLNDIMLAAHYALDYSGVSRILVVDLDVHQ 160
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 94/242 (38%), Gaps = 41/242 (16%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP NHRFPMSK+S L+ + + + + P SE+ H Y +
Sbjct: 10 YHHHLPDNHRFPMSKYSLLPQQLLYEGTLTQ-ENFFAPDLASETQVLRTHCPYYFQSLLD 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRT---DPVPTHVIAV----YLPFFLQRRPVFFDIA-- 149
G K Q+ GF WSA L R RT + A+ L F+D
Sbjct: 69 GSIDGKAQRKIGFPWSAQLIERERTIGQGTIDNTSFAIENGCSLNIAGGTHHAFYDRGEG 128
Query: 150 -AVLADLICIAVY-LTFFLQRRPVFFDI--------AAVLAD----LIHFMVGINTQPV- 194
+L D++ A Y L + R + D+ AA+ AD M G P
Sbjct: 129 FCMLNDIMLAAHYALDYSGVSRILVVDLDVHQGNGTAAMAADDSRIFTFSMHGEKNYPYH 188
Query: 195 ----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTD 238
Y + L E L + + P+LV + +GVD + D+LG++ LT
Sbjct: 189 KESSDLDLPLPDYIEDKAYLSLLNETLDELFEKVHPELVFFQSGVDVLESDKLGRMGLTL 248
Query: 239 HG 240
+G
Sbjct: 249 NG 250
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 401 MKSSHRAL-------IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLD 453
M ++H AL I+ + L + G+GTA + D +FTFSMH +NYP+ K+ SDLD
Sbjct: 136 MLAAHYALDYSGVSRILVVDLDVHQGNGTAAMAADDSRIFTFSMHGEKNYPYHKESSDLD 195
Query: 454 VAI 456
+ +
Sbjct: 196 LPL 198
>gi|108803993|ref|YP_643930.1| histone deacetylase superfamily protein [Rubrobacter xylanophilus
DSM 9941]
gi|108765236|gb|ABG04118.1| histone deacetylase superfamily [Rubrobacter xylanophilus DSM 9941]
Length = 301
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 97/252 (38%), Gaps = 47/252 (18%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVI--DKSKQLIEPQQISESIAELVH 88
+ + +++ Y LP HRFPM K++ ++R++V S L EP++ + H
Sbjct: 1 MRVFYSDSYVIPLPEGHRFPMRKYA-----MLRERVAAGRASGGLREPRRAKDEDLLRAH 55
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP--- 136
+ Y+ + +G ++E + GF WS L R R T IA L
Sbjct: 56 SPSYLRRVVSGSLGKQELRRLGFPWSERLVERSRRAAGGTIDACLAALEEGIAANLAGGT 115
Query: 137 --FFLQRRPVF--FDIAAV------LADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFM 186
F R F F+ AAV A L+ A + + + I A + F
Sbjct: 116 HHAFADRGEGFCVFNDAAVAIRAVQAAGLVERAAVIDTDVHQGDGTAAIFAADGSVFTFS 175
Query: 187 V-GINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH 228
V G P + L E L +L F+P L +Y AG DP
Sbjct: 176 VHGEKNYPFRKGRSDLDVGLPDGADDGAFLEALSEGLERVLEGFRPQLAVYLAGADPFAG 235
Query: 229 DELGKLNLTDHG 240
D LG+L ++ G
Sbjct: 236 DRLGRLAVSKEG 247
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ GDGTA IF D +VFTFS+H +NYPFRK SDLDV + G DD
Sbjct: 156 HQGDGTAAIFAADGSVFTFSVHGEKNYPFRKGRSDLDVGLPDGADDG 202
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + W L +RS + I L L + + THHAF D G GFC+ ND A
Sbjct: 74 RRLGFPWSERLVERSRRAAGGTIDACLAALEEGIAANLAGGTHHAFADRGEGFCVFNDAA 133
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+A R + G+V + ++D DVHQ
Sbjct: 134 VAIRAVQAAGLVERAAVIDTDVHQ 157
>gi|116075072|ref|ZP_01472332.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9916]
gi|116067269|gb|EAU73023.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. RS9916]
Length = 303
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA P G+GFC+ ND A+AA L+ G+VR+VL+VDLDVHQ
Sbjct: 117 GTHHAHPGFGSGFCIFNDCAVAASVLLAQGMVRQVLVVDLDVHQ 160
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + GDGTA F DP VFT S+H N+P RK CSDLD+ +D T D
Sbjct: 151 VLVVDLDVHQGDGTAACFASDPRVFTLSVHAASNFPLRKVCSDLDIPLDDHTTD 204
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + LP +L + +PDLV+Y+AGVDPHQ D LG+L LTD G
Sbjct: 206 AYMEAIGDQLPELLERLQPDLVLYNAGVDPHQDDRLGRLKLTDLG 250
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y LP +HRFPM+KF + L+ D+ + +Q+ P IS E VH +
Sbjct: 2 LPLVYHPLYSAPLPSSHRFPMAKF-HLLHQLLLDRGTVQEQQIHRPVSISRRDLEQVHER 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+Y F G T ++Q+ G + L R
Sbjct: 61 QYHQAFCLGTLTREQQRRIGLPATRPLVQR 90
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKERGL 620
GL RD V+D + IP+ATV GGGY ++ L +R ++ RAA + G+
Sbjct: 250 GLLQRDRLVIDACLRRNIPIATVIGGGY-DELMPLVERHALVFRAAVEQARLYGI 303
>gi|410664778|ref|YP_006917149.1| deacetylase [Simiduia agarivorans SA1 = DSM 21679]
gi|409027135|gb|AFU99419.1| deacetylase [Simiduia agarivorans SA1 = DSM 21679]
Length = 279
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 49/234 (20%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
M+KF +YL + + I + P +I S L H ++YV F +G + Q+ G
Sbjct: 1 MAKFGLLHSYL-QQQGIAQPTNTFRPGKIKHSQLALAHCEQYVTAFASGLLDAQAQRRLG 59
Query: 111 FEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA--------------VLADLI 156
WS GL R P T + A F R + +A V DL
Sbjct: 60 LPWSEGLVRRTFISPAGTLLAA----HFALREGIACHLAGGTHHAHRDFASGFCVFNDLA 115
Query: 157 CIA-VYLTFFLQRRPVFFDI--------AAVLADL-IHFMVGINTQ---PVSGYQATLKE 203
A V L L R + FD+ A +LAD+ + ++ + PV Q+ L
Sbjct: 116 VTARVLLEQQLATRVLVFDLDVHQGDGTARILADVPGTYTCSVHCEKNFPVRKAQSDLDV 175
Query: 204 HLP-----------------GILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+LP +L ++PD ++YDAGVD D LG+LN++ G
Sbjct: 176 NLPVAMSDDGYLQVVSDTLMRLLRDYQPDFILYDAGVDVFADDPLGRLNISLQG 229
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 58/198 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ L + GDGTA I P +T S+HC +N+P RK SDLDV + V D G
Sbjct: 130 VLVFDLDVHQGDGTARILADVPGTYTCSVHCEKNFPVRKAQSDLDVNLPVAMSDDG---- 185
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L S+ + + LLR P+ F + AG + D L
Sbjct: 186 ------YLQVVSDTL------MRLLRDYQPD---------FILYDAGVDVFADDPLGRLN 224
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ GI + D VL A IP+ATV
Sbjct: 225 ISLQGIAAR---------------------------------DALVLSMARDRNIPIATV 251
Query: 589 TGGGYCADIDQLAQRQTI 606
GGGY D +A+R I
Sbjct: 252 IGGGYDKDQTAVARRHAI 269
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFC 517
D R + L W L +R+ + G L F LR THHA D +GFC
Sbjct: 51 DAQAQRRLGLPWSEGLVRRT-FISPAGTLLAAHFALREGIACHLAGGTHHAHRDFASGFC 109
Query: 518 LMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ ND+A+ AR L+ + +VL+ DLDVHQ
Sbjct: 110 VFNDLAVTARVLLEQQLATRVLVFDLDVHQ 139
>gi|422662000|ref|ZP_16724094.1| histone deacetylase family protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330982971|gb|EGH81074.1| histone deacetylase family protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 168
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 74/204 (36%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I T S+HC +N+P RK SD D+ + +G DA V
Sbjct: 23 HQGDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVV------- 75
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ + +LL P++ + AG + D AL L G+
Sbjct: 76 ---------DDLLNYLLPFYKPDLVLYD---------AGVDVHKDDALGYLQLTDQGLAN 117
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
RD VL + IPV V GGGY D
Sbjct: 118 ---------------------------------RDEAVLRHCLGRDIPVMGVIGGGYSKD 144
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 145 RQALARRHGILHHSAQRVWNDMGL 168
Score = 48.1 bits (113), Expect = 0.013, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + + L +L +KPDLV+YDAGVD H+ D LG L LTD G
Sbjct: 71 YLNVVDDLLNYLLPFYKPDLVLYDAGVDVHKDDALGYLQLTDQG 114
>gi|398804556|ref|ZP_10563549.1| deacetylase, histone deacetylase/acetoin utilization protein
[Polaromonas sp. CF318]
gi|398093553|gb|EJL83931.1| deacetylase, histone deacetylase/acetoin utilization protein
[Polaromonas sp. CF318]
Length = 295
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
I L + G+GTA IF DP+VFT S+H +N+PFRK+ SDLDV + G DA
Sbjct: 145 IDLDVHQGNGTASIFANDPSVFTLSLHGQKNFPFRKEASDLDVDLPDGCGDAAYLQALEH 204
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS 504
+ L +R E G+ LFL E +R
Sbjct: 205 ALDELERRFEP----GLILFLAGADPYEGDRLG 233
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 58/238 (24%)
Query: 60 YLVRDKVIDKSKQLIEPQQISESIAEL--VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGL 117
+L+RD+++ + Q+ Q + + EL VHT +Y+ +G Q+ GF WS G+
Sbjct: 5 HLLRDRLVSERPQVRMAQAPAATDGELALVHTPDYIDAISHGTLPAAAQREIGFPWSPGM 64
Query: 118 ASRVRTDPVPTHVIAVYLPFFLQRRP-----------------------VFFDIAAVLAD 154
A R R T V A + RP F+ AAV A
Sbjct: 65 AERARRSAGAT-VAAARVAMGAPGRPGEGVAANLAGGTHHSYAHKGGGFCVFNDAAVAAR 123
Query: 155 LICIAVYLTFFLQRRPVFFDI-----------AAVLA-DLIHFMVGINTQPV-------- 194
L+ R+P+ I A++ A D F + ++ Q
Sbjct: 124 LMQAEWARQRRHGRKPLQVAIIDLDVHQGNGTASIFANDPSVFTLSLHGQKNFPFRKEAS 183
Query: 195 ------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L+ L + +F+P L+++ AG DP++ D LG+L L+ G
Sbjct: 184 DLDVDLPDGCGDAAYLQALEHALDELERRFEPGLILFLAGADPYEGDRLGRLALSFDG 241
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINR----------FSTHHAFPDH 512
A R + W +++R+ R+ G + R++ R THH++
Sbjct: 51 AAQREIGFPWSPGMAERAR--RSAGATVAAARVAMGAPGRPGEGVAANLAGGTHHSYAHK 108
Query: 513 GAGFCLMNDMALAARYLI-------RHGIVRK---VLIVDLDVHQHTRSIPV----PSLT 558
G GFC+ ND A+AAR + RHG RK V I+DLDVHQ + + PS+
Sbjct: 109 GGGFCVFNDAAVAARLMQAEWARQRRHG--RKPLQVAIIDLDVHQGNGTASIFANDPSVF 166
Query: 559 VLS 561
LS
Sbjct: 167 TLS 169
>gi|359789845|ref|ZP_09292775.1| hypothetical protein MAXJ12_10690 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254255|gb|EHK57283.1| hypothetical protein MAXJ12_10690 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 281
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 80/210 (38%), Gaps = 64/210 (30%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDA-- 463
A ++ + L + GDGTA I +P FTFSMH RNYP RK SDLDVA+ GT DDA
Sbjct: 128 ANVLIVDLDVHQGDGTADILKNEPRAFTFSMHGERNYPVRKIASDLDVALPDGTGDDAYL 187
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
G T LT ++ + N G+ DP HA D G ++D
Sbjct: 188 GRLTDILTDISGRAAWDIVFYNAGV--------DP--------HA--DDRLGRLALSDYG 229
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
L AR + G H R I
Sbjct: 230 LRARDWLTIG------------HFRERGI------------------------------- 246
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRAATH 613
PV V GGGY DI LA R I+ A
Sbjct: 247 PVCGVIGGGYSRDIGALAARHAILFEVAAE 276
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA DHGAGFC ND+A+AA LI G+ VLIVDLDVHQ
Sbjct: 96 GSHHARRDHGAGFCTFNDVAVAALVLIAEGLAANVLIVDLDVHQ 139
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L + L I + D+V Y+AGVDPH D LG+L L+D+G
Sbjct: 186 YLGRLTDILTDISGRAAWDIVFYNAGVDPHADDRLGRLALSDYG 229
>gi|404493709|ref|YP_006717815.1| histone deacetylase family protein [Pelobacter carbinolicus DSM
2380]
gi|77545744|gb|ABA89306.1| histone deacetylase family protein [Pelobacter carbinolicus DSM
2380]
Length = 299
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDMA 523
R + L W L QR + + + L D THHA DHG G+CL ND+
Sbjct: 76 RLIGLPWSPELVQRVKYTAGATVAVCRHALDDGVGLSLGGGTHHACSDHGQGYCLYNDVV 135
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
+AAR L G VR+VL++D DVHQ
Sbjct: 136 VAARALQAEGSVRRVLVIDCDVHQ 159
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS----KQLIEPQQISESIAEL 86
+ I + +++ LP HRFP SK+S ++R +V+ + + + P+ +S++
Sbjct: 1 MKIYYFDQHTFFLPEKHRFPASKYS-----MLRQRVLTANVVPPENMRTPEPVSDADLHR 55
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
HT +Y+H+F +G T+ E ++ G WS L RV+
Sbjct: 56 AHTGDYLHRFEHGLLTKAEIRLIGLPWSPELVQRVK 91
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 58/196 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I + G+GTA D ++FTFS+H +N+P+ K DLDV + GT D
Sbjct: 150 VLVIDCDVHQGNGTAETTTGDSSIFTFSIHGEKNFPYCKIPGDLDVGLPDGTGDE----- 204
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L E + L S P++
Sbjct: 205 -----AYLRALDEALD------IALSRSRPDL---------------------------- 225
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ + +DVH++ R L L+ G+ RD VL + IPV V
Sbjct: 226 --------AIYLAGVDVHENDR------LGRLALTRSGIGRRDESVLSKCRESTIPVGVV 271
Query: 589 TGGGYCADIDQLAQRQ 604
GGY D+ ++ + Q
Sbjct: 272 MAGGYSRDLSKMVEIQ 287
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG-----ECISSSARISS 251
Y L E L L++ +PDL IY AGVD H++D LG+L LT G E + S R S+
Sbjct: 206 YLRALDEALDIALSRSRPDLAIYLAGVDVHENDRLGRLALTRSGIGRRDESVLSKCREST 265
>gi|224006361|ref|XP_002292141.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972660|gb|EED90992.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 299
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D+G GFC+ +D+A+AA L+++GI R++LI+DLDVHQ
Sbjct: 123 GTHHAFSDYGEGFCIFSDIAVAANVLLQNGI-RRILIIDLDVHQ 165
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + G+G A +FD + V+TFSMHC NY +K+ SDLD+ + +G D +
Sbjct: 156 ILIIDLDVHQGNGNAKLFDGNSDVWTFSMHCQGNYFSKKETSDLDIELPIGCGDETYIST 215
Query: 469 ALTWVTFLSQ 478
W+ + Q
Sbjct: 216 LSHWLRRIEQ 225
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKV--IDKSKQLIEPQQISESIAELVHTK 90
I + + YE +PP HRFPM K+ + V++K+ + IE + E H
Sbjct: 3 IRYNDVYEVNMPPGHRFPMEKY-REVRLAVQEKIGGFTEVDYFIESPLATVEQLETTHDA 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWS 114
Y+H++ G+ T+ E + GF W+
Sbjct: 62 NYIHRYLTGQMTDAENRNIGFPWN 85
>gi|397697644|ref|YP_006535527.1| histone deacetylase superfamily [Pseudomonas putida DOT-T1E]
gi|397334374|gb|AFO50733.1| histone deacetylase superfamily [Pseudomonas putida DOT-T1E]
Length = 171
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + + L + THHA DH AGFC+ ND+
Sbjct: 40 QRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAHYDHPAGFCIFNDL 99
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +RYL+ G V +VLI D DVHQ
Sbjct: 100 AVISRYLLEAGRVHRVLIFDCDVHQ 124
>gi|320104431|ref|YP_004180022.1| histone deacetylase [Isosphaera pallida ATCC 43644]
gi|319751713|gb|ADV63473.1| Histone deacetylase [Isosphaera pallida ATCC 43644]
Length = 309
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H+++Y LP HRFPM K++ + R D+ + L+EP S++ E VH Y
Sbjct: 10 VYHSDRYTLPLPEWHRFPMRKYALLRQQVERAAWSDRVR-LLEPPAASDADLERVHDPGY 68
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
V + G +E++ G WS GL R R
Sbjct: 69 VRRVATGGLRPEEEREIGLPWSEGLVERSR 98
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 30/44 (68%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA IF DP VFT+S+H +NYP RK SDLDV + G D
Sbjct: 167 GDGTAAIFADDPRVFTYSIHSAKNYPMRKPPSDLDVPLPDGIGD 210
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSD-PEIN-RFSTHHAFPDHGAGFCLMNDM 522
R + L W L +RS + I L D +N THHA GAG+C+ ND
Sbjct: 82 EREIGLPWSEGLVERSRRSTGGTIAAARAALEDFASVNLAGGTHHAHVHKGAGYCVFNDA 141
Query: 523 ALAARYLIRHGIVRKVLIVDLDVH 546
A+AAR L+ G V +V+I+D DVH
Sbjct: 142 AVAARALLAEGRVERVVILDCDVH 165
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+E +P L + +L IY AG DP++ D LG+L LT G
Sbjct: 213 YLARLEETVPQALDRAGANLAIYLAGADPYEGDRLGRLKLTKEG 256
>gi|239814774|ref|YP_002943684.1| histone deacetylase [Variovorax paradoxus S110]
gi|239801351|gb|ACS18418.1| Histone deacetylase [Variovorax paradoxus S110]
Length = 311
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I L + G+GTA IF DP+VFT S+H +N+PFRK+ SDLDV + G DA
Sbjct: 158 IDLDVHQGNGTASIFRSDPSVFTLSLHGQKNFPFRKEASDLDVELPDGCGDA 209
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLI----RHGIVRKVLIVDLDVHQHTRSIPV----P 555
THHA+ D G GFC+ ND A+AAR + R G KV ++DLDVHQ + + P
Sbjct: 117 GTHHAYADKGGGFCVFNDAAVAARLMQAEHGRAGRQLKVAVIDLDVHQGNGTASIFRSDP 176
Query: 556 SLTVLS 561
S+ LS
Sbjct: 177 SVFTLS 182
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 34 IHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKE 91
++ ++ LPP HRFPMS+++ L+RD++++ + + + + ++ L HT +
Sbjct: 7 FYSGQFVLPLPPGHRFPMSRYA-----LLRDRLLEHLPAVDMDQAPRATDGELALAHTPQ 61
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
++ +G + + + GF WS + R R
Sbjct: 62 WIAAISDGSVSPQAMREIGFPWSEAMVERSR 92
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ L + +F P LVIY AG DP + D LG+L LT G
Sbjct: 211 YLTALEHALDELERRFSPGLVIYLAGADPFERDRLGRLKLTFDG 254
>gi|402823253|ref|ZP_10872687.1| histone deacetylase superfamily protein [Sphingomonas sp. LH128]
gi|402263213|gb|EJU13142.1| histone deacetylase superfamily protein [Sphingomonas sp. LH128]
Length = 303
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+ALAA LI G V ++LI+DLDVHQ
Sbjct: 115 GSHHALADTGAGYCVFNDLALAANRLIEEGDVSRILILDLDVHQ 158
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 86/210 (40%), Gaps = 64/210 (30%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ L + GDGTA + +FT S+H +N+P RK S LDV + T DAG
Sbjct: 148 RILILD--LDVHQGDGTAALTAGRSDIFTLSIHAEKNFPTRKARSSLDVGLPDATGDAG- 204
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFSTHHAFPDHGAGFCLMNDMAL 524
+L L S P + +RF PD
Sbjct: 205 -----------------------YLEALAGSLPMVLDRF-----VPD------------- 223
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
LI +L +D H + L LS GL RD YV A GIP
Sbjct: 224 ----LI-------LLQAGVDAHADDK------LGRLSLTDEGLASRDRYVATEAKRRGIP 266
Query: 585 VATVTGGGYCADIDQLAQR--QTIIHRAAT 612
+A+ GGGY AD + +A R +TI+ +AT
Sbjct: 267 LASTLGGGYGADREAVALRHARTILTLSAT 296
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY L LP +L +F PDL++ AGVD H D+LG+L+LTD G
Sbjct: 203 AGYLEALAGSLPMVLDRFVPDLILLQAGVDAHADDKLGRLSLTDEG 248
>gi|390169273|ref|ZP_10221214.1| histone deacetylase family protein [Sphingobium indicum B90A]
gi|389588136|gb|EIM66190.1| histone deacetylase family protein [Sphingobium indicum B90A]
Length = 321
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA P GAG+C+ ND+A+AA LI G R++LI+DLDVHQ
Sbjct: 135 GSHHALPGSGAGYCVFNDLAIAANRLIAEGDARRILILDLDVHQ 178
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L + +P +L F+PDL++Y AGVDPH+ D LG+L L+D G
Sbjct: 225 YMDALMKVMPPVLDDFRPDLILYQAGVDPHEGDRLGRLALSDAG 268
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI++ L + G TA + +FT S+H RN+P RK S LD+ + GT D
Sbjct: 166 ARRILILD--LDVHQGVSTAVLTGGRGDIFTLSIHADRNFPVRKARSTLDIGLPDGTGD 222
>gi|294011535|ref|YP_003544995.1| histone deacetylase family protein [Sphingobium japonicum UT26S]
gi|292674865|dbj|BAI96383.1| histone deacetylase family protein [Sphingobium japonicum UT26S]
Length = 321
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA P GAG+C+ ND+A+AA LI G R++LI+DLDVHQ
Sbjct: 135 GSHHALPGSGAGYCVFNDLAIAANRLIAEGDARRILILDLDVHQ 178
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L + +P +L F+PDL++Y AGVDPH+ D LG+L L+D G
Sbjct: 225 YMDALMKVMPPVLDDFRPDLILYQAGVDPHEEDRLGRLALSDAG 268
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI++ L + GDGTA + +FT S+H RN+P RK S LD+ + GT D
Sbjct: 166 ARRILILD--LDVHQGDGTAVLTGGRGDIFTLSIHADRNFPVRKARSTLDIGLPDGTGD 222
>gi|254456264|ref|ZP_05069693.1| histone deacetylase family protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083266|gb|EDZ60692.1| histone deacetylase family protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 297
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 61/207 (29%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
++R LI++ L + G+G + IF + VFTFSMH NYP +K SDLDV ++ +D
Sbjct: 147 ANRILIVD--LDVHQGNGNSEIFKYNRHVFTFSMHSKTNYPAKKSISDLDVELEDNLED- 203
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMA 523
+++ L+ E+N + F
Sbjct: 204 -----------------------DVYIKTLKFYLNELNNENFDFVF-------------- 226
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGI 583
I +D+H + R L L G+ +RD V+++ S I
Sbjct: 227 ---------------YIAGVDIHFNDR------LGKLKISDEGIRLRDELVIESFSSKKI 265
Query: 584 PVATVTGGGYCADIDQLAQRQTIIHRA 610
P+ V GGGY D ++L + +++H++
Sbjct: 266 PICGVLGGGYNKDFNKLVELHSLLHQS 292
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA YL+ G ++LIVDLDVHQ
Sbjct: 116 GSHHANYDSGAGYCVFNDVAVAAHYLLDKGFANRILIVDLDVHQ 159
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ LP+++ Y + +H+FP++KF + YL+ KV+ K P S H
Sbjct: 1 MELPVVNHKDYVAKIGDDHKFPINKFGELAKYLIEQKVV---KNFFNPVACSFETLNRAH 57
Query: 89 TKEYVHKFFNGKTTEKEQKVTGF 111
+++Y+H N + + K GF
Sbjct: 58 SEDYIHDIKNKTLDKNKIKKIGF 80
>gi|399063313|ref|ZP_10746847.1| deacetylase, histone deacetylase/acetoin utilization protein
[Novosphingobium sp. AP12]
gi|398032393|gb|EJL25735.1| deacetylase, histone deacetylase/acetoin utilization protein
[Novosphingobium sp. AP12]
Length = 303
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+ALAA LI G V ++LI+DLDVHQ
Sbjct: 115 GSHHALADSGAGYCVFNDLALAANRLIDEGDVSRILILDLDVHQ 158
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 86/209 (41%), Gaps = 62/209 (29%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ L + GDGTA + +FT S+H +N+P RK S LD+ + TDDAG
Sbjct: 148 RILILD--LDVHQGDGTAALTAGRSDIFTLSIHAEKNFPTRKARSSLDIGLPDATDDAG- 204
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+L + +R P ++ F M ++ L
Sbjct: 205 ---------YLEALTGSLR-------------PVLDHF---------------MPELIL- 226
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
L +D H + L LS GL RD +V A GIP+
Sbjct: 227 -------------LQAGVDAHADDK------LGRLSLTDEGLADRDCFVATEAKRRGIPL 267
Query: 586 ATVTGGGYCADIDQLAQR--QTIIHRAAT 612
A+ GGGY AD + +A R +TI+ +AT
Sbjct: 268 ASTLGGGYGADREAVALRHARTILALSAT 296
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY L L +L F P+L++ AGVD H D+LG+L+LTD G
Sbjct: 203 AGYLEALTGSLRPVLDHFMPELILLQAGVDAHADDKLGRLSLTDEG 248
>gi|325103759|ref|YP_004273413.1| histone deacetylase [Pedobacter saltans DSM 12145]
gi|324972607|gb|ADY51591.1| Histone deacetylase [Pedobacter saltans DSM 12145]
Length = 300
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G GFCL+ND A+AA YLI I +LI+DLDVHQ
Sbjct: 117 GTHHAGSDWGEGFCLLNDQAIAANYLIDSQISNSILIIDLDVHQ 160
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF + AVFTFS+H +N+PFRK+ SDLDVA G +D
Sbjct: 151 ILIIDLDVHQGNGTAEIFADNDAVFTFSIHGEKNFPFRKEKSDLDVASPDGIED 204
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 21/246 (8%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFPM K+ L+R + I + + EP+ ++E I L H+ EY +K + +
Sbjct: 14 LPEGHRFPMLKYELIPQQLIR-RGIAREENFFEPEILNEEIVLLTHSNEYWNKLKSLSLS 72
Query: 103 EKEQKVTGFEWSAGLAS---RVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICI- 158
E++ GF S L R+ + + + A+ + + C+
Sbjct: 73 YHEERRIGFPLSERLVKRELRICRGTIDSALYAIDYGVSFNSAGGTHHAGSDWGEGFCLL 132
Query: 159 ---AVYLTFFLQRRPVFFDIAAVLADL-IHFMVGI-----NTQPVSGYQATLKEHLPGIL 209
A+ + + + + ++ DL +H G + V + +++ P
Sbjct: 133 NDQAIAANYLIDSQ---ISNSILIIDLDVHQGNGTAEIFADNDAVFTFSIHGEKNFP--F 187
Query: 210 AQFKPDL-VIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNL 268
+ K DL V G++ ++ ++ NL + C+SS I +AGVD D+LGKL+L
Sbjct: 188 RKEKSDLDVASPDGIEDEEYQDILVENL-EKAICLSSPDMIFYQAGVDVLSTDKLGKLSL 246
Query: 269 TDHGVK 274
+ G K
Sbjct: 247 SPDGCK 252
>gi|341884856|gb|EGT40791.1| hypothetical protein CAEBREN_15499 [Caenorhabditis brenneri]
Length = 504
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC+ N++A+AA+ +R G+ +KV+IVD DVH
Sbjct: 136 HHAMPDEGCGFCIFNNVAIAAKEALRSGLAKKVMIVDYDVH 176
>gi|341892512|gb|EGT48447.1| hypothetical protein CAEBREN_17707 [Caenorhabditis brenneri]
Length = 504
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC+ N++A+AA+ +R G+ +KV+IVD DVH
Sbjct: 136 HHAMPDEGCGFCIFNNVAIAAKEALRSGLAKKVMIVDYDVH 176
>gi|254507752|ref|ZP_05119883.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus 16]
gi|219549277|gb|EED26271.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus 16]
Length = 307
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVID----KSKQLIEPQQISESIAE 85
+P+I+ + Y + LP HR+P+ K+ + + + + D + Q +EP +S +
Sbjct: 2 IPLIYHSIYSQLPLPEGHRYPIQKYQLLYEVITQQRECDPRWKHAFQFVEPSPLSAECVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH +Y+ F+G + + GF WS L SR T T H +A++L
Sbjct: 62 QVHCHDYIDALFSGALPAPKMRRIGFPWSDTLVSRTLTSAGGTSETVEQSAKHGVAIHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQ--RRPVFFDI-------AAVLADLIHFMV 187
F L + + +A L+ + + D A L + +V
Sbjct: 122 GGYHHAHKDFGSGFCLINDLVLAAKRALTLEGIEKVIVIDSDVHHGDGTATLCEQEENIV 181
Query: 188 GIN---------TQPVSG-------------YQATLKEHLPGILAQFKPDLVIYDAGVDP 225
++ +P S + +T + + ++ +PDL++YDAGVD
Sbjct: 182 TLSFHCDKNFPARKPDSDLDVALSRNTGDEEFLSTFRSVVEMAISIHQPDLILYDAGVDI 241
Query: 226 HQHDELGKLNLT 237
H DELG +++
Sbjct: 242 HHEDELGYFDVS 253
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 403 SSHRALIME-------IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++ RAL +E I + GDGTA + +++ + T S HC +N+P RK SDLDVA
Sbjct: 144 AAKRALTLEGIEKVIVIDSDVHHGDGTATLCEQEENIVTLSFHCDKNFPARKPDSDLDVA 203
Query: 456 IDVGTDD 462
+ T D
Sbjct: 204 LSRNTGD 210
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA+ + + KV+++D DVH
Sbjct: 125 HHAHKDFGSGFCLINDLVLAAKRALTLEGIEKVIVIDSDVHH 166
>gi|347539598|ref|YP_004847023.1| histone deacetylase superfamily protein [Pseudogulbenkiania sp.
NH8B]
gi|345642776|dbj|BAK76609.1| histone deacetylase superfamily protein [Pseudogulbenkiania sp.
NH8B]
Length = 312
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+GFC+ ND+A+AAR L+ G +R+ L++DLDVHQ
Sbjct: 113 GTHHAQADKGSGFCVFNDVAVAARLLLDEGHIRRALVIDLDVHQ 156
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
RAL+++ L + G+GTA +F D VFTFSMH N+PFRK D DV + GT D G
Sbjct: 146 RALVID--LDVHQGNGTAALFRDDARVFTFSMHGQNNFPFRKVAGDRDVELPDGTSDEG- 202
Query: 466 RTVALTWVTFLSQRSEKM 483
++ LS E++
Sbjct: 203 ------YLALLSANLEEL 214
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 93/257 (36%), Gaps = 62/257 (24%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAEL--VHTK 90
I T+ LPP HRFP K+ L+ + V + L+EP + + AEL VH
Sbjct: 3 IFRTDHLALPLPPGHRFPAEKYR-----LLAEAVEGFALHLLEPAPAA-TPAELCRVHDA 56
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPV------ 144
YVH G E+ Q+ G WS L +R T IA LQ V
Sbjct: 57 AYVHALLEGSLPERAQREIGLPWSPQLVARACHSVGAT--IAAARVALLQGCGVNLAGGT 114
Query: 145 ------------FFDIAAVLADLICIAVYLTFFLQRRPVFFDI--------AAVLAD--- 181
F+ AV A L+ ++ RR + D+ AA+ D
Sbjct: 115 HHAQADKGSGFCVFNDVAVAARLLLDEGHI-----RRALVIDLDVHQGNGTAALFRDDAR 169
Query: 182 -LIHFMVGINTQPVSGYQATLKEHLP------GILAQFKPDL-----------VIYDAGV 223
M G N P LP G LA +L V Y AG
Sbjct: 170 VFTFSMHGQNNFPFRKVAGDRDVELPDGTSDEGYLALLSANLEELFWLARPDLVFYLAGA 229
Query: 224 DPHQHDELGKLNLTDHG 240
DP++ D LGKL LT G
Sbjct: 230 DPYEGDRLGKLGLTADG 246
>gi|375013620|ref|YP_004990608.1| deacetylase [Owenweeksia hongkongensis DSM 17368]
gi|359349544|gb|AEV33963.1| deacetylase, histone deacetylase/acetoin utilization protein
[Owenweeksia hongkongensis DSM 17368]
Length = 300
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G GFCL+ND+ LA+ +L+ + + +++L+VDLDVHQ
Sbjct: 117 GTHHAYANSGEGFCLLNDICLASHWLLDNNLAKQILVVDLDVHQ 160
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ + L + G+GTA I + + VFTFSMH +NYP K+ SDLD+ + GT+D+
Sbjct: 151 ILVVDLDVHQGNGTAKIMENESRVFTFSMHGEKNYPMHKESSDLDIELPDGTEDS 205
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 41/250 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I ++ Y LPP HRFPM K+S L+ + + P+++SE HT
Sbjct: 2 LKIAYSPIYHHPLPPGHRFPMVKYSLIPEQLLYEGTCSED-NFFTPEKLSEKQILRTHTA 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQR 141
EY K T +E++ TGF + L R T T H I++ +
Sbjct: 61 EYWEKLKTNSLTRQEERKTGFPLTPKLVEREITICQGTIDNAKHALEHGISMNIAGGTHH 120
Query: 142 RPVFFDIAAVLADLICIAVY--LTFFLQRRPVFFDI--------AAVLAD----LIHFMV 187
L + IC+A + L L ++ + D+ A ++ + M
Sbjct: 121 AYANSGEGFCLLNDICLASHWLLDNNLAKQILVVDLDVHQGNGTAKIMENESRVFTFSMH 180
Query: 188 GINTQPV-----------------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230
G P+ S Y TL+ +LP ++ + +PD + + +GVD D+
Sbjct: 181 GEKNYPMHKESSDLDIELPDGTEDSLYLQTLENNLPRLIDEVQPDFIFFQSGVDILATDK 240
Query: 231 LGKLNLTDHG 240
LG+L L+ G
Sbjct: 241 LGRLGLSMDG 250
>gi|422640564|ref|ZP_16703990.1| histone deacetylase superfamily protein, partial [Pseudomonas
syringae Cit 7]
gi|330952954|gb|EGH53214.1| histone deacetylase superfamily protein [Pseudomonas syringae Cit
7]
Length = 265
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 72 QLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VR 122
QL+ P+ I L H Y++++ +G + ++Q+ G WS LA R +
Sbjct: 3 QLMRPELCPADILALAHDPSYINRYLDGDLSREDQRRLGLPWSEALARRTIRAVGGSLLT 62
Query: 123 TDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQR----RPVFFD---- 174
+ H +A +L +D A +AV F LQ + + FD
Sbjct: 63 AEQALKHGLACHLAGGTHH--AHYDYPAGFCIFNDLAVISQFLLQSGRVDKVLIFDCDVH 120
Query: 175 ----IAAVLADLIHFM-VGINTQ---PVSGYQATLKEHLPG-----------------IL 209
A +LAD + V ++ + P Q+ LP +L
Sbjct: 121 QGDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGDVDYLNVVDDLLNYLL 180
Query: 210 AQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+KPDLV+YDAGVD H+ D LG L LTD G
Sbjct: 181 PFYKPDLVLYDAGVDVHKDDALGYLQLTDQG 211
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 79/204 (38%), Gaps = 58/204 (28%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I T S+HC +N+P RK SD D+ + +G D V +L
Sbjct: 120 HQGDGTARILADTEDAITVSLHCEKNFPARKAQSDWDIPLPMGMGD----------VDYL 169
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ + + +LL P++ + AG
Sbjct: 170 NVVDDLLN------YLLPFYKPDLVLYD---------AG--------------------- 193
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+DVH+ +L L GL RD VL + IPV V GGGY D
Sbjct: 194 ------VDVHKDD------ALGYLQLTDQGLANRDEAVLRHCLGRDIPVMGVIGGGYSKD 241
Query: 597 IDQLAQRQTIIHRAATHVYKERGL 620
LA+R I+H +A V+ + GL
Sbjct: 242 RRALARRHGILHHSAQRVWNDMGL 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L W L++R+ + + L + THHA D+ AGFC+ ND+
Sbjct: 37 QRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLAGGTHHAHYDYPAGFCIFNDL 96
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+ +++L++ G V KVLI D DVHQ
Sbjct: 97 AVISQFLLQSGRVDKVLIFDCDVHQ 121
>gi|116072402|ref|ZP_01469669.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. BL107]
gi|116064924|gb|EAU70683.1| putative histone deacetylase/AcuC/AphA family protein
[Synechococcus sp. BL107]
Length = 283
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + L + L QR+ + L L N + THHA P+ G+GFC+ ND
Sbjct: 55 QRRIGLPATSALVQRTWLAVGGTLLTARLALRYGLANHLAGGTHHAHPEFGSGFCIFNDC 114
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+AAR L++ V K+LIVDLDVHQ
Sbjct: 115 AVAARVLLQRHEVEKILIVDLDVHQ 139
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A + + LP +L Q +P LV+++AGVDPH+ D LG+L+L++ G
Sbjct: 186 YLAAIGDQLPDVLDQLRPQLVLFNAGVDPHRDDRLGRLHLSNDG 229
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + GDG+A F D V TFS+H N+P RK SD+D+ + GT+D
Sbjct: 130 ILIVDLDVHQGDGSAACFQADERVTTFSVHAASNFPLRKVNSDIDIPLPDGTED 183
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAAT 612
GL MRD VLD + IPVATV GGGY +++ L +R I+ RAA
Sbjct: 229 GLLMRDRLVLDACLRRKIPVATVIGGGY-DNLEPLVRRHAIVFRAAA 274
>gi|442610968|ref|ZP_21025674.1| Histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441746896|emb|CCQ11736.1| Histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 301
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 99/245 (40%), Gaps = 50/245 (20%)
Query: 40 ECTLPPNHRFPMSKFSKTFNYLVRDKV---IDKSKQLIEPQQISESIAELVHTKEYVHKF 96
E TLP HRFP+ K+ +N L ++ I K+ LI+ ++ +L H K+YV F
Sbjct: 10 ELTLPDRHRFPIQKYRDLYNALQSTELSNFIVKANTLIDT-----TLIQLCHDKDYVDAF 64
Query: 97 FNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQRRP---- 143
+GK + + K GF WS L +R T H I V L
Sbjct: 65 IDGKLSPSDVKKMGFPWSKVLVNRTLISLNNTLLAAKHALRHGIGVNLSGGYHHAQKNLG 124
Query: 144 ----VFFDIAAVLADLICIAVYLTFFLQRRPVFF-DIAAVLAD--------LIH------ 184
+F D A V LI + + T + V D A L IH
Sbjct: 125 AGFCIFNDFAVVAHTLIHLGLADTVLIFDCDVHHGDGTATLCQENQNIITCSIHCEQNFP 184
Query: 185 ---------FMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLN 235
F + + TQ S Y T+++ L KPD+V+Y+AG D + DELG +
Sbjct: 185 RIKPNSDYDFPLPVGTQD-STYIETVQQALELCFRLHKPDIVLYNAGADIYCKDELGHFD 243
Query: 236 LTDHG 240
++ G
Sbjct: 244 ISLAG 248
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + GAGFC+ ND A+ A LI G+ VLI D DVH
Sbjct: 117 HHAQKNLGAGFCIFNDFAVVAHTLIHLGLADTVLIFDCDVHH 158
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 58/184 (31%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + ++ + T S+HC +N+P K SD D + VGT D+ T++ + Q
Sbjct: 159 GDGTATLCQENQNIITCSIHCEQNFPRIKPNSDYDFPLPVGTQDS-------TYIETVQQ 211
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
E RL P+I ++ GA +++
Sbjct: 212 ALE---------LCFRLHKPDIVLYNA-------GADIYCKDELG--------------- 240
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
D+ + G+ RD VL+ ++ PV GGGY +
Sbjct: 241 ---HFDI-----------------SLAGVRTRDSKVLNYCLTKKTPVVATLGGGYQRNSH 280
Query: 599 QLAQ 602
QL Q
Sbjct: 281 QLTQ 284
>gi|294084024|ref|YP_003550781.1| histone deacetylase superfamily protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663596|gb|ADE38697.1| histone deacetylase superfamily [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 304
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 66/203 (32%)
Query: 417 YDGDGTA-FIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTF 475
+ GDGTA + D+D AV T S+HC NYP RK SD D+ +D G D+ G ++
Sbjct: 159 HQGDGTARMLMDEDRAV-TVSLHCATNYPARKAISDFDIELDRGLDNEG-------YLAI 210
Query: 476 LSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIV 535
L+ K+ G++
Sbjct: 211 LADTLSKLA------------------------------------------------GVM 222
Query: 536 RKVLIV---DLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGG 592
R +++ +D+H R L L+ GL RD VL ++ IPVATV GGG
Sbjct: 223 RPDIVIYDAGVDIHIDDR------LGYLNVTDQGLRARDDMVLAHFLARDIPVATVIGGG 276
Query: 593 YCADIDQLAQRQTIIHRAATHVY 615
Y D+ L R I +A+ Y
Sbjct: 277 YDKDVAALISRHAHIFKASADAY 299
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I+ Y+ L HRFP KF++ ++L + ++ + E++++ +H
Sbjct: 2 LHIVSHPDYDIPLADGHRFPSRKFTRLISHLDAEGILAEFTHATPIPATIEALSQ-IHDP 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
YV +G T + +V GFEWS LA R
Sbjct: 61 NYVASIHDGSITTEALRVLGFEWSEALARR 90
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI----NRFSTHHAFPDHGAGFCLMND 521
R + W L++RS + NG L RL+ THHA HGAGFC+ ND
Sbjct: 77 RVLGFEWSEALARRS-FLAPNGT-LMTARLAREHGLACHAAGGTHHAHYGHGAGFCVFND 134
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
+A A L+R + +VLI+D DVHQ
Sbjct: 135 IAFTAINLLRDPGIDQVLILDCDVHQ 160
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY A L + L + +PD+VIYDAGVD H D LG LN+TD G
Sbjct: 206 GYLAILADTLSKLAGVMRPDIVIYDAGVDIHIDDRLGYLNVTDQG 250
>gi|219113079|ref|XP_002186123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582973|gb|ACI65593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 67/225 (29%)
Query: 398 TSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDP------AVFTFSMHCGRNYPFRKQCSD 451
T+ S R L+++ + + GDGTA F P ++T S+HC NYP K S
Sbjct: 161 TATEPSVERVLVIDCDV--HQGDGTAR-FSAAPDGPLHSKLYTLSLHCASNYPRLKAHS- 216
Query: 452 LDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPD 511
DVG D +M ++ L+R D + D
Sbjct: 217 ---TWDVGLPD-------------------RMEDDEYMDALVRAVDVALAAAQPDLVLYD 254
Query: 512 HGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRD 571
G +DV++ + L L + G+ RD
Sbjct: 255 AG-----------------------------VDVYRKDK------LGRLHLTLDGIRRRD 279
Query: 572 YYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
+VLD +SA IPVA V GGGY D+D LA+R I+H A++V++
Sbjct: 280 RWVLDRCVSARIPVAAVVGGGYDRDVDALARRHAIVHEEASYVWR 324
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
LA +PDLV+YDAGVD ++ D+LG+L+LT G
Sbjct: 243 LAAAQPDLVLYDAGVDVYRKDKLGRLHLTLDG 274
>gi|298207409|ref|YP_003715588.1| Histone deacetylase superfamily protein [Croceibacter atlanticus
HTCC2559]
gi|83850045|gb|EAP87913.1| Histone deacetylase superfamily protein [Croceibacter atlanticus
HTCC2559]
Length = 299
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ I L + G+GTA IF D +VFTFSMH +NYPF+K+ SDLD+A+ T D
Sbjct: 150 VLIIDLDVHQGNGTAEIFKDDTSVFTFSMHGEKNYPFKKESSDLDIALPSHTTD 203
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + G GFC+ ND A+ ARYL ++VLI+DLDVHQ
Sbjct: 116 GTHHAYTNRGEGFCMFNDQAIGARYLQHTNKAKQVLIIDLDVHQ 159
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y+ LP HRFPM K+ L+ + D EP SE+ +LVHT Y+ N
Sbjct: 10 YKVPLPEGHRFPMEKYELLPKQLIYEGTCDPD-NFFEP-VYSETFVDLVHTTNYISDLKN 67
Query: 99 GKTTEKEQKVTGFEWSAGLASR 120
+ + GF ++ L R
Sbjct: 68 LTLDARAARKIGFPLNSALVER 89
>gi|88857897|ref|ZP_01132539.1| histone deacetylase family protein [Pseudoalteromonas tunicata D2]
gi|88819514|gb|EAR29327.1| histone deacetylase family protein [Pseudoalteromonas tunicata D2]
Length = 302
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFC+ ND+A+AA + I G+V +VLI D DVHQ
Sbjct: 121 HHAFTDFGSGFCIFNDLAIAAAHCIELGLVERVLIFDCDVHQ 162
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSK--QLIEPQQISESIAELVHTKEYVHKFFNGK 100
LP HRFP+ K+ F + K +D S Q P + L H+ EYV +F G+
Sbjct: 16 LPATHRFPIKKYRLLFEAI---KTLDDSNHFQFQLPTPATSQQLLLCHSSEYVMQFLTGE 72
Query: 101 TTEKEQKVTGFEWSAGLASRVRTD---PVPTHVIAVYLPFFLQRRP----VFFDIAA--- 150
K + GF WS L R + IA+ F LQ F D +
Sbjct: 73 LDSKAIRKMGFPWSKELVERTCLSVGASINAAQIALKYGFSLQLSGGYHHAFTDFGSGFC 132
Query: 151 VLADLICIAVY-LTFFLQRRPVFFDI---------------AAVLADLIHFMVGINTQPV 194
+ DL A + + L R + FD + +++ IH +
Sbjct: 133 IFNDLAIAAAHCIELGLVERVLIFDCDVHQGDGTAQISQQQSNIISCSIHCEQNFPAKKQ 192
Query: 195 SG--------------YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y +T+++ L ++PDL++Y+AG D DELG LN++ G
Sbjct: 193 QSDLDFALNKGCTDDEYLSTVQQALTLATRLYQPDLILYNAGADIFAQDELGYLNISLEG 252
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDDAG 464
R LI + + + GDGTA I + + + S+HC +N+P +KQ SDLD A++ G TDD
Sbjct: 152 RVLIFDCDV--HQGDGTAQISQQQSNIISCSIHCEQNFPAKKQQSDLDFALNKGCTDDEY 209
Query: 465 NRTV--ALTWVTFLSQRSEKMRNNGIFLF 491
TV ALT T L Q + N G +F
Sbjct: 210 LSTVQQALTLATRLYQPDLILYNAGADIF 238
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 557 LTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
L L+ + G+Y RD V+ + IP+A GGGY DI+QL + +AA +K
Sbjct: 243 LGYLNISLEGVYQRDLAVIGFCQAQSIPLACAIGGGYMRDINQLVNVHLQLFKAALQYHK 302
>gi|410697943|gb|AFV77011.1| deacetylase, histone deacetylase/acetoin utilization protein
[Thermus oshimai JL-2]
Length = 293
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
S R L+++ L + G+GTA F +DP V+T S+H RNYP +K+ SDLDV + G D
Sbjct: 142 SGRVLVLD--LDAHQGNGTAVFFGQDPTVYTLSLHGERNYPLKKERSDLDVGLPDGVGDG 199
Query: 464 GNRTVALTWVTFLSQRSEKMRNNGIF 489
+L E + G F
Sbjct: 200 ----------AYLRALEEALEKAGAF 215
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPD G+ L ND+A+A +L R G +VL++DLD HQ
Sbjct: 111 GTHHAFPDRAEGYSLFNDVAVAVAWLRRRGFSGRVLVLDLDAHQ 154
>gi|297623371|ref|YP_003704805.1| histone deacetylase [Truepera radiovictrix DSM 17093]
gi|297164551|gb|ADI14262.1| Histone deacetylase [Truepera radiovictrix DSM 17093]
Length = 309
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D G GFC+ ND+A+AA + + G+ +V+I+DLDVHQ
Sbjct: 122 GTHHAFADRGEGFCVFNDLAVAAYHALERGLAARVMIIDLDVHQ 165
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
A +M I L + GD TA + DP VFT+S+H NYPF K+ S DV ++ G DA
Sbjct: 154 ARVMIIDLDVHQGDDTAHLCAFDPHVFTYSVHGAHNYPFHKERSACDVPLEDGVTDA 210
>gi|395008638|ref|ZP_10392264.1| deacetylase, histone deacetylase/acetoin utilization protein
[Acidovorax sp. CF316]
gi|394313360|gb|EJE50408.1| deacetylase, histone deacetylase/acetoin utilization protein
[Acidovorax sp. CF316]
Length = 325
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 389 QSPHCRPGCTSGMKSSHRAL-IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRK 447
Q H R S M ++ AL + I L + G+GTA IF D +VFT S+H RN+PFRK
Sbjct: 144 QDEHAR--AASAMGANPLALRVAVIDLDVHQGNGTARIFQGDDSVFTLSLHGARNFPFRK 201
Query: 448 QCSDLDVAIDVGTDD 462
+ DLDV + G D
Sbjct: 202 EAGDLDVELPDGCGD 216
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK----SKQLIEPQQISESIAELVHTK 90
+ +++ LP HRFPM+K+ L+RD V + Q+ P S++ L HT
Sbjct: 5 YADQFVLPLPEGHRFPMAKYR-----LLRDAVTAHLPGVALQVAPP--ASDAELALAHTP 57
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
Y+ NG Q+ GF WS +A R R
Sbjct: 58 AYIDAIANGTLPAPAQREIGFPWSPAMAERAR 89
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 11/55 (20%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLI-----------RHGIVRKVLIVDLDVHQ 547
THHA+ D G+GFC+ NDMA+AAR + + + +V ++DLDVHQ
Sbjct: 118 GTHHAYADKGSGFCVFNDMAVAARLMQDEHARAASAMGANPLALRVAVIDLDVHQ 172
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L++ L + +F P LV+Y AG DPH D LG+L+L+ G
Sbjct: 219 YLAALEQALDTLEQRFAPGLVLYLAGADPHVGDRLGRLHLSHDG 262
>gi|163761313|ref|ZP_02168388.1| hypothetical protein HPDFL43_21684 [Hoeflea phototrophica DFL-43]
gi|162281470|gb|EDQ31766.1| hypothetical protein HPDFL43_21684 [Hoeflea phototrophica DFL-43]
Length = 271
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 79/205 (38%), Gaps = 58/205 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA I + AV T S+H +NYP RKQ SD+DVA+ G D
Sbjct: 123 ILVVDLDVHQGDGTAEICGANAAVRTVSVHGEKNYPVRKQTSDIDVALPDGVRD----EA 178
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
L + +L ++ I+RF F + G
Sbjct: 179 YLETIDWLLPQT-------------------IDRFDPDLVFFNAG--------------- 204
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H+ R L LS GL RD V + IP+A V
Sbjct: 205 --------------VDPHEADR------LGRLSLTDDGLRERDRRVFSFFRARNIPIAAV 244
Query: 589 TGGGYCADIDQLAQRQTIIHRAATH 613
GGGY DI+ LA+R AA
Sbjct: 245 IGGGYSQDINALARRHLGTFEAAAE 269
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAGFC ND+A+A+ L+ G R +L+VDLDVHQ
Sbjct: 89 GSHHARRDQGAGFCTFNDVAVASLVLLADGEARNILVVDLDVHQ 132
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+ LP + +F PDLV ++AGVDPH+ D LG+L+LTD G
Sbjct: 179 YLETIDWLLPQTIDRFDPDLVFFNAGVDPHEADRLGRLSLTDDG 222
>gi|308493223|ref|XP_003108801.1| CRE-HDA-6 protein [Caenorhabditis remanei]
gi|308247358|gb|EFO91310.1| CRE-HDA-6 protein [Caenorhabditis remanei]
Length = 514
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC+ N++A+AA+ +R+G ++V+IVD DVH
Sbjct: 137 HHAMPDEGCGFCIFNNVAIAAKETLRNGTAKRVMIVDYDVH 177
>gi|298711263|emb|CBJ26508.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 341
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 58/209 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + + G+G A +F P V TFS+HC NY K+ SD+D+ ++ G D
Sbjct: 181 ILIVDCDVHQGNGNAVLFKSKPEVSTFSIHCKANYFSEKEDSDVDIEVEEGAGDE----- 235
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+++ LS+R L L D H PD
Sbjct: 236 --EYLSLLSER------------LPSLVD---------HVRPD----------------L 256
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ G V D +H R L LS GL +R+ V DTA++ GIP
Sbjct: 257 IFYQGGV--------DPLEHDR------LGRLSLTREGLRLRNRLVYDTALARGIPTVLT 302
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY D+D ++ I R+ VY++
Sbjct: 303 MGGGYPKDLDPASEDFGHIVRSHRDVYED 331
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVHQ 547
THHAF D G GFC+ +D+A+AA +R +R++LIVD DVHQ
Sbjct: 145 GTHHAFSDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQ 190
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKF-----SKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
LP+ + + Y LP HRFPM K+ L R I + P + +
Sbjct: 9 LPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRVNGIPAVSFAVSPTASLDDLC- 67
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
H K YV ++F G+ T +E + GF WS R
Sbjct: 68 TTHDKGYVERYFEGRFTNRENRTVGFPWSEASVKR 102
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + L E LP ++ +PDL+ Y GVDP +HD LG+L+LT G
Sbjct: 237 YLSLLSERLPSLVDHVRPDLIFYQGGVDPLEHDRLGRLSLTREG 280
>gi|334343955|ref|YP_004552507.1| histone deacetylase [Sphingobium chlorophenolicum L-1]
gi|334100577|gb|AEG48001.1| Histone deacetylase [Sphingobium chlorophenolicum L-1]
Length = 305
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI G R++LI+DLDVHQ
Sbjct: 115 GSHHALADTGAGYCVFNDLAIAANRLIAEGEARRILILDLDVHQ 158
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L LP +L F+PDL++Y AGVDPH D LG+L L+D G
Sbjct: 205 YMDALMRVLPPVLDDFRPDLILYQAGVDPHADDRLGRLALSDEG 248
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI++ L + GDGTA + +FT S+H N+P RK S LD+ + GT D
Sbjct: 146 ARRILILD--LDVHQGDGTAVLTGGRDDIFTLSIHAESNFPVRKARSSLDIGLRDGTGD 202
>gi|433658231|ref|YP_007275610.1| Histone deacetylase [Vibrio parahaemolyticus BB22OP]
gi|432508919|gb|AGB10436.1| Histone deacetylase [Vibrio parahaemolyticus BB22OP]
Length = 302
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 82/215 (38%), Gaps = 58/215 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ + H I+ I + GDGTA + ++P + T S HC +N+P RK SDLDV + GT
Sbjct: 144 LDNEHVDKILIIDSDVHHGDGTATLCQEEPDIVTLSFHCDKNFPARKPQSDLDVPLAKGT 203
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + L P++ + AG
Sbjct: 204 DDE----------TFLMTFKE------VVEMALNFHRPDMVIYD---------AG----- 233
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+D+HQ+ L ++ RD ++ +
Sbjct: 234 ----------------------VDIHQND------ELGYFDVSTQAIFERDRFLFQRMKN 265
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
GIPVA V GGGY + L + +AAT V+
Sbjct: 266 RGIPVAAVVGGGYRTNHADLVPIHMQLIKAATEVF 300
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+I+ Y + LP HR+P+ K+ + + RD V + Q EPQ ++ + VH
Sbjct: 2 LPLIYHPIYSKLELPEGHRYPIMKYQYLYEEVRRD-VQAEWVQFFEPQALTIEAIKRVHD 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
+YV G + + GF WS L +R T T + A
Sbjct: 61 ADYVDLLVQGNMPAAKMRRIGFPWSEALITRTLTSAAGTLLTA 103
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
RT+ T L+ +EK +GI L L HHA D G+GFCL ND+ +A
Sbjct: 91 RTLTSAAGTLLT--AEKALEHGIALHL---------SGGYHHAHKDFGSGFCLFNDLVIA 139
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
A++++ + V K+LI+D DVH
Sbjct: 140 AKHMLDNEHVDKILIIDSDVHH 161
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
T KE + L +PD+VIYDAGVD HQ+DELG +++
Sbjct: 211 TFKEVVEMALNFHRPDMVIYDAGVDIHQNDELGYFDVS 248
>gi|308094689|ref|ZP_05891236.2| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AN-5034]
gi|308094251|gb|EFO43946.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AN-5034]
Length = 288
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 58/215 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ + H I+ I + GDGTA + ++P + T S HC +N+P RK SDLDV + GT
Sbjct: 130 LDNEHVDKILIIDSDVHHGDGTATLCQEEPDIVTLSFHCDKNFPARKPQSDLDVPLAKGT 189
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + L L P++ + AG
Sbjct: 190 DDE----------TFLMTFKE------VVEMALNLHRPDMVIYD---------AG----- 219
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+D+HQ L ++ RD ++ +
Sbjct: 220 ----------------------VDIHQDDE------LGYFDVSTQAIFERDRFLFQLMKN 251
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
GIPVA V GGGY + L + +AAT V+
Sbjct: 252 RGIPVAAVVGGGYRTNHADLVPIHMQLIKAATKVF 286
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
RT+ T L+ +EK +GI L L HHA D G+GFCL ND+ +A
Sbjct: 77 RTLTSAAGTLLT--AEKALEHGIALHL---------SGGYHHAHKDFGSGFCLFNDLVIA 125
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
A++++ + V K+LI+D DVH
Sbjct: 126 AKHMLDNEHVDKILIIDSDVHH 147
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
+P HR+P+ K+ + + RD V + Q EPQ +S + VH +YV G
Sbjct: 1 MPEGHRYPIMKYQYLYEEVRRD-VQAEWVQFFEPQALSIEAIKRVHDADYVDLLAQGNMP 59
Query: 103 EKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
+ + GF WS L +R T T + A
Sbjct: 60 AAKMRRIGFPWSEALITRTLTSAAGTLLTA 89
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
T KE + L +PD+VIYDAGVD HQ DELG +++
Sbjct: 197 TFKEVVEMALNLHRPDMVIYDAGVDIHQDDELGYFDVS 234
>gi|116621031|ref|YP_823187.1| histone deacetylase superfamily protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116224193|gb|ABJ82902.1| histone deacetylase superfamily [Candidatus Solibacter usitatus
Ellin6076]
Length = 299
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + GDGTA IF+ DP+V T S+H N+PFRKQ S +D+ + GT D
Sbjct: 154 IDLDVHQGDGTASIFESDPSVLTVSIHGENNFPFRKQRSRIDIGLSDGTSD 204
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF G+GFC+ ND+A+A L R G+ + ++DLDVHQ
Sbjct: 117 GTHHAFRAEGSGFCVFNDLAVAILMLRREGLAARAAVIDLDVHQ 160
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISE-SIAELVHTKE 91
+ + +++ LPP H+FP K++ ++R K+ + + + P +E + EL H ++
Sbjct: 7 LYYCDQHPIPLPPGHKFPTQKYA-----MLRSKLEAEHRFELTPAPPAEIAQLELAHEEQ 61
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
YV +G + + GF WS L R
Sbjct: 62 YVRAILHGDVDPRVMRRIGFPWSEALVRRT 91
>gi|28898919|ref|NP_798524.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838572|ref|ZP_01991239.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ3810]
gi|260363629|ref|ZP_05776436.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus K5030]
gi|260896197|ref|ZP_05904693.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus Peru-466]
gi|260900725|ref|ZP_05909120.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ4037]
gi|28807138|dbj|BAC60408.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149748037|gb|EDM58896.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ3810]
gi|308088789|gb|EFO38484.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus Peru-466]
gi|308109740|gb|EFO47280.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus AQ4037]
gi|308115075|gb|EFO52615.1| histone deacetylase/AcuC/AphA family protein [Vibrio
parahaemolyticus K5030]
Length = 302
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 58/215 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ + H I+ I + GDGTA + ++P + T S HC +N+P RK SDLDV + GT
Sbjct: 144 LDNEHVDKILIIDSDVHHGDGTATLCQEEPDIVTLSFHCDKNFPARKPQSDLDVPLAKGT 203
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + L L P++ + AG
Sbjct: 204 DDE----------TFLMTFKE------VVEMALNLHRPDMVIYD---------AG----- 233
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+D+HQ L ++ RD ++ +
Sbjct: 234 ----------------------VDIHQDDE------LGYFDVSTQAIFERDRFLFQLMKN 265
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
GIPVA V GGGY + L + +AAT V+
Sbjct: 266 RGIPVAAVVGGGYRTNHADLVPIHMQLIKAATKVF 300
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+I+ + Y LP HR+P+ K+ + + RD V + Q EPQ +S + VH
Sbjct: 2 LPLIYHSIYSRLELPEGHRYPIMKYQYLYEEVRRD-VQAEWVQFFEPQALSIEAIKRVHD 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
+YV G + + GF WS L +R T T + A
Sbjct: 61 ADYVDLLAQGNMPAAKMRRIGFPWSEALITRTLTSAAGTLLTA 103
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T L+ +EK +GI L L HHA D G+GFCL ND+ +
Sbjct: 90 TRTLTSAAGTLLT--AEKALEHGIALHL---------SGGYHHAHKDFGSGFCLFNDLVI 138
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA++++ + V K+LI+D DVH
Sbjct: 139 AAKHMLDNEHVDKILIIDSDVHH 161
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
T KE + L +PD+VIYDAGVD HQ DELG +++
Sbjct: 211 TFKEVVEMALNLHRPDMVIYDAGVDIHQDDELGYFDVS 248
>gi|269965988|ref|ZP_06180080.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
40B]
gi|269829384|gb|EEZ83626.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
40B]
Length = 307
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 75/194 (38%), Gaps = 58/194 (29%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
++ H ++ I + GDGTA + D +P + T S HC +N+P RK SDLDV + G
Sbjct: 147 ALEVEHVDKVLIIDSDVHHGDGTATLCDDEPDIITLSFHCDKNFPARKPQSDLDVPLVRG 206
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
T D FL+ F +
Sbjct: 207 TGDED--------------------------FLM---------------------AFKEV 219
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAI 579
DMAL L R +V + +D+HQ L G+ RD +++ T
Sbjct: 220 VDMALN---LHRPDLV--IYDAGVDIHQDDE------LGYFDVSTQGILERDRFLMQTVK 268
Query: 580 SAGIPVATVTGGGY 593
S GIPVA V GGGY
Sbjct: 269 SRGIPVAAVVGGGY 282
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK---QLIEPQQISESIAEL 86
LP I+ Y + LP HR+P+ K+ + ++ D K Q +P+ ++ +
Sbjct: 2 LPFIYHPIYSQLELPEGHRYPIMKYQYLYESVLVHMEKDNWKEHTQFFQPEALTVGEVKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
VH +EYV +G + + GF WS L +R T T + A
Sbjct: 62 VHDEEYVELLVSGNMPAAKMRRIGFPWSESLITRTLTSAAGTALTA 107
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + G+GFCL ND+ +AAR + V KVLI+D DVH
Sbjct: 124 HHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHH 165
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
KE + L +PDLVIYDAGVD HQ DELG +++ G
Sbjct: 215 AFKEVVDMALNLHRPDLVIYDAGVDIHQDDELGYFDVSTQG 255
>gi|320333724|ref|YP_004170435.1| histone deacetylase [Deinococcus maricopensis DSM 21211]
gi|319755013|gb|ADV66770.1| Histone deacetylase [Deinococcus maricopensis DSM 21211]
Length = 310
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
R LI++ L + G+GTA + +P FT S+H RNYPFRK+ S LD+A+ GTDDA
Sbjct: 159 RVLILD--LDVHQGNGTAAMLAGEPRAFTLSVHAERNYPFRKERSTLDLALPDGTDDA 214
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DH GF +ND+ ++A + G +VLI+DLDVHQ
Sbjct: 126 GTHHAYRDHAEGFSFLNDVVISAARALADGWATRVLILDLDVHQ 169
>gi|91223676|ref|ZP_01258941.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
12G01]
gi|91191762|gb|EAS78026.1| histone deacetylase/AcuC/AphA family protein [Vibrio alginolyticus
12G01]
Length = 307
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 75/194 (38%), Gaps = 58/194 (29%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
++ H ++ I + GDGTA + D +P + T S HC +N+P RK SDLDV + G
Sbjct: 147 ALEVEHVDKVLIIDSDVHHGDGTATLCDDEPDIITLSFHCDKNFPARKPQSDLDVPMVRG 206
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
T D FL+ F +
Sbjct: 207 TGDED--------------------------FLM---------------------AFKEV 219
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAI 579
DMAL L R +V + +D+HQ L G+ RD +++ T
Sbjct: 220 VDMALN---LHRPDLV--IYDAGVDIHQDDE------LGYFDVSTQGILERDRFLMQTVK 268
Query: 580 SAGIPVATVTGGGY 593
S GIPVA V GGGY
Sbjct: 269 SRGIPVAAVVGGGY 282
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK---QLIEPQQISESIAEL 86
LP I+ Y + LP HR+P+ K+ + ++ D K Q +P+ ++ +
Sbjct: 2 LPFIYHPIYSQLELPEGHRYPIMKYQYLYESVLVHMEKDNWKEHTQFFQPEALTVGEVKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
VH +EYV +G + + GF WS L +R T T + A
Sbjct: 62 VHDEEYVELLVSGNMPAAKMRRIGFPWSESLITRTLTSAAGTALTA 107
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + G+GFCL ND+ +AAR + V KVLI+D DVH
Sbjct: 124 HHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHH 165
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
KE + L +PDLVIYDAGVD HQ DELG +++ G
Sbjct: 215 AFKEVVDMALNLHRPDLVIYDAGVDIHQDDELGYFDVSTQG 255
>gi|381203585|ref|ZP_09910691.1| histone deacetylase [Sphingobium yanoikuyae XLDN2-5]
Length = 300
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI G V ++LI+DLDVHQ
Sbjct: 115 GSHHALADSGAGYCVFNDLAIAANRLIAEGDVNRILILDLDVHQ 158
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L E LP +L F PDL++Y AGVD H D LG+L L+D G
Sbjct: 205 YLAALGEMLPRVLNDFVPDLILYQAGVDGHVDDRLGRLALSDEG 248
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 60/201 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+R LI++ L + GDGTA + VFT S+H +N+P RK S LD+ + DD G
Sbjct: 147 NRILILD--LDVHQGDGTASLMAGRGDVFTLSIHAEKNFPVRKARSTLDLGL---ADDTG 201
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+ ++ L + ++ N+ F+ L L ++ D G ++D L
Sbjct: 202 D----ADYLAALGEMLPRVLND--FVPDLILYQAGVD------GHVDDRLGRLALSDEGL 249
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
AAR GL MR A++ IP
Sbjct: 250 AAR-------------------------------------DGLVMR------QALARAIP 266
Query: 585 VATVTGGGYCADIDQLAQRQT 605
VA+ GGGY AD +A+R
Sbjct: 267 VASCMGGGYGADRMAVARRHA 287
>gi|406707601|ref|YP_006757953.1| histone deacetylase family protein [alpha proteobacterium HIMB59]
gi|406653377|gb|AFS48776.1| histone deacetylase family protein [alpha proteobacterium HIMB59]
Length = 298
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV 554
THHA +HG GFC+ ND+ A+ LI G V KVLI+DLDVHQ +I +
Sbjct: 116 GTHHAHHNHGLGFCVFNDLGYTAKNLIAEGHVEKVLILDLDVHQGDGTIDI 166
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 113/316 (35%), Gaps = 92/316 (29%)
Query: 323 QPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISD 382
QP A P ER+ + + + Q EL+K+ L LI +P S + + ++I
Sbjct: 44 QPTPA--PMERLTRAHFSLYIEKVSQDELSKEDLRLINLPWSERLRN-----RSFLAIEG 96
Query: 383 TTRDRAQSPHCRPGCTSGMKSSH-------------------RALIME--------IGLP 415
T Q+ C G + H + LI E + L
Sbjct: 97 TYLTARQALKSGVACHVGGGTHHAHHNHGLGFCVFNDLGYTAKNLIAEGHVEKVLILDLD 156
Query: 416 CYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTF 475
+ GDGT I DP +FT S+H N+PF K+ +D+ + GT D ++
Sbjct: 157 VHQGDGTIDICQGDPRIFTCSIHSESNFPFEKKQGWMDIGLPAGTKDE-------AYLDT 209
Query: 476 LSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIV 535
L Q + + R P++ F AG + ++ L L GI
Sbjct: 210 LIQTLQSIE---------RSLTPDLVLFD---------AGIDVYSEDGLGNLELSIEGIR 251
Query: 536 RKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCA 595
++ D V +H R +P VATV GGGY
Sbjct: 252 KR----DQLVLEHYRGKDIP-----------------------------VATVIGGGYSK 278
Query: 596 DIDQLAQRQTIIHRAA 611
D +LA R +I +A
Sbjct: 279 DTQELAHRHGLIFESA 294
>gi|226356660|ref|YP_002786400.1| histone deacetylase superfamily protein [Deinococcus deserti
VCD115]
gi|226318650|gb|ACO46646.1| putative histone deacetylase superfamily [Deinococcus deserti
VCD115]
Length = 303
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D A R L W + +R+ + + L+ + THHAF D GFCL
Sbjct: 75 DRAEERAFGLPWSEGVVERARRAAGGSLAALHDALAVGWGGNLAGGTHHAFHDRAEGFCL 134
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND A+ R+ + G+ R+V +VDLDVHQ
Sbjct: 135 VNDAAILTRFALDEGLARRVAVVDLDVHQ 163
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA + +P FT S+H RNYPFRK+ S LD+ + G DA
Sbjct: 157 VDLDVHQGNGTAALLRAEPQAFTLSIHGERNYPFRKEQSSLDLGLGDGVTDA 208
>gi|427408837|ref|ZP_18899039.1| hypothetical protein HMPREF9718_01513 [Sphingobium yanoikuyae ATCC
51230]
gi|425713147|gb|EKU76161.1| hypothetical protein HMPREF9718_01513 [Sphingobium yanoikuyae ATCC
51230]
Length = 300
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI G V ++LI+DLDVHQ
Sbjct: 115 GSHHALADSGAGYCVFNDLAIAANRLIAEGDVNRILILDLDVHQ 158
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L E LP +L F PDL++Y AGVD H D LG+L L+D G
Sbjct: 205 YLAALGEMLPRVLDDFAPDLILYQAGVDGHVDDRLGRLALSDEG 248
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+R LI++ L + GDGTA + VFT S+H +N+P RK S LD+ + T DA
Sbjct: 147 NRILILD--LDVHQGDGTASLMAGRGDVFTMSIHAEKNFPVRKARSTLDLGLADDTGDA 203
>gi|393776833|ref|ZP_10365127.1| histone deacetylase [Ralstonia sp. PBA]
gi|392716190|gb|EIZ03770.1| histone deacetylase [Ralstonia sp. PBA]
Length = 310
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I L + G+GTA I D VFT S+H RNYPFRK+ SDLDV + G DA
Sbjct: 155 IDLDVHQGNGTASILRDDATVFTLSLHGERNYPFRKEASDLDVGLPDGCSDA 206
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCLMN 520
A R + W + +RS + I + D +N THHA+ D G GFC+ N
Sbjct: 71 ARQREIGFPWSEAMVERSRRSAGATIAACRQAMRDGIAVNLAGGTHHAYADKGGGFCVFN 130
Query: 521 DMALAARYLIR----HGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPG 566
D A+AAR L + G +V ++DLDVHQ T SI TV + + G
Sbjct: 131 DSAIAARRLQQDADAEGRQLRVAVIDLDVHQGNGTASILRDDATVFTLSLHG 182
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSK--QLIEPQQISESIAELVHTKEYVHKFFNGK 100
LP HRFPM K+ ++RD V + L E + S++ L HT EYV K G
Sbjct: 13 LPEGHRFPMQKYR-----MLRDAVTASNAGIALREAPRASDADLLLAHTDEYVQKVSAGT 67
Query: 101 TTEKEQKVTGFEWSAGLASRVRTDPVPT 128
Q+ GF WS + R R T
Sbjct: 68 LEPARQREIGFPWSEAMVERSRRSAGAT 95
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ L +L +F P L+IY AG DPH+ D LG+L LT G
Sbjct: 208 YLDALQGALDLMLGRFVPGLLIYLAGADPHEGDGLGRLRLTMDG 251
>gi|296283064|ref|ZP_06861062.1| hypothetical protein CbatJ_05560 [Citromicrobium bathyomarinum
JL354]
Length = 294
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L HLP +L +F PD+V+Y AGVDPH++D+LG+L LTD G
Sbjct: 195 YLDVLDTHLPHVLDEFAPDIVLYQAGVDPHENDKLGRLALTDEG 238
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 485 NNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIV 541
N G +L +R + +HHA D GAGFC+ ND+A+ A LI G R+VLIV
Sbjct: 83 NGGTWLAARLAMRHGYAANSAAGSHHALYDTGAGFCVFNDLAVCANRLIAQGDARRVLIV 142
Query: 542 DLDVHQ 547
D DVHQ
Sbjct: 143 DCDVHQ 148
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ R LI++ + + GDGTA + VFT S+H +N+P RK S LDVA+ GT DA
Sbjct: 136 ARRVLIVDCDV--HQGDGTAALTAGREDVFTLSLHAEKNFPVRKARSSLDVALPDGTSDA 193
>gi|218295840|ref|ZP_03496620.1| histone deacetylase superfamily [Thermus aquaticus Y51MC23]
gi|218243578|gb|EED10106.1| histone deacetylase superfamily [Thermus aquaticus Y51MC23]
Length = 293
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTAF F DP V+T S+H RNYP +K+ DLDV + G D
Sbjct: 145 VLVVDLDAHQGNGTAFFFRDDPTVYTLSLHGERNYPLKKEKGDLDVGLPDGVGD 198
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAFPD G+ L ND+A+A R+L G +VL+VDLD HQ
Sbjct: 111 GTHHAFPDRAEGYSLFNDVAVAVRWLRARGFWGRVLVVDLDAHQ 154
>gi|149185536|ref|ZP_01863852.1| hypothetical protein ED21_20964 [Erythrobacter sp. SD-21]
gi|148830756|gb|EDL49191.1| hypothetical protein ED21_20964 [Erythrobacter sp. SD-21]
Length = 313
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L HLP +LA F PDLV+Y AGVD H D LG++NL+D G
Sbjct: 204 GYLDALDRHLPQVLASFDPDLVLYQAGVDVHGDDRLGRINLSDEG 248
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE----INRFSTHHAFPDHGAGFCL 518
A R + ++QR + NG +L+ P + +HHA D GAG+C+
Sbjct: 72 AKERRIGFPVTPHIAQRVQH--TNGGTWLAAQLARPHGYAANSAAGSHHALFDTGAGYCV 129
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+AA LI G ++LIVDLDVHQ
Sbjct: 130 FNDLAVAANRLIAEGDAERILIVDLDVHQ 158
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
I+ + L + GDGTA + VFT S+H +N+P RK S LDV + G DD G
Sbjct: 149 ILIVDLDVHQGDGTASLTATRDDVFTLSLHAEKNFPVRKARSSLDVPLADGIDDDG 204
>gi|386856400|ref|YP_006260577.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
gi|379999929|gb|AFD25119.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
Length = 273
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ H GF +ND+A++AR+L+ H R++LI+DLDVHQ
Sbjct: 90 THHAYAGHAEGFSFLNDVAISARWLLDHAHARRILILDLDVHQ 132
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ +H I+ + L + G+GTA +F + V T S+H RNYPF K+ S LDV + GT
Sbjct: 115 LDHAHARRILILDLDVHQGNGTASLFAGESRVLTVSVHAARNYPFDKETSGLDVNLPDGT 174
Query: 461 DDA 463
DA
Sbjct: 175 GDA 177
>gi|399018524|ref|ZP_10720701.1| deacetylase, histone deacetylase/acetoin utilization protein
[Herbaspirillum sp. CF444]
gi|398101438|gb|EJL91660.1| deacetylase, histone deacetylase/acetoin utilization protein
[Herbaspirillum sp. CF444]
Length = 280
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ DHGAGFC+ ND A+A+R + V +V +VDLDVHQ
Sbjct: 94 GTHHAYADHGAGFCVFNDAAVASRLMQAERRVSRVAVVDLDVHQ 137
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 58/187 (31%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
+ L + G+GTA I D +VFT S+H RNYPF K+ SDLDVA+ G D
Sbjct: 131 VDLDVHQGNGTASILANDDSVFTLSLHGERNYPFEKEQSDLDVALPDGVTD--------- 181
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
V +LS + + L++ DP++
Sbjct: 182 -VEYLSALQDALAQ------LMQRFDPQL------------------------------- 203
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
+ + D H+ R L + + GL RD V + IP+A G
Sbjct: 204 -----IIYLAGADPHEGDR------LGRMKLSLAGLAERDRMVFELGRQQKIPIAVTMAG 252
Query: 592 GYCADID 598
GY +I+
Sbjct: 253 GYGKNIE 259
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
Y + L++ L ++ +F P L+IY AG DPH+ D LG++ L+
Sbjct: 184 YLSALQDALAQLMQRFDPQLIIYLAGADPHEGDRLGRMKLS 224
>gi|415911251|ref|ZP_11553390.1| Deacetylase, partial [Herbaspirillum frisingense GSF30]
gi|407762277|gb|EKF71157.1| Deacetylase, partial [Herbaspirillum frisingense GSF30]
Length = 177
Score = 58.5 bits (140), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 401 MKSSHRAL-IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
M++ RA + + L + G+GTA I +D +VFT S+H NYPF K+ SDLDVA+ G
Sbjct: 14 MQAERRAARVAIVDLDVHQGNGTASILARDDSVFTLSLHGENNYPFEKEQSDLDVALPDG 73
Query: 460 TDDAGNRTVALTWVTFLSQR 479
DA +T L QR
Sbjct: 74 IGDADYLAALQGALTTLQQR 93
Score = 43.1 bits (100), Expect = 0.50, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ L + +F P L+IY AG DPH+ D LGK+ L+ G
Sbjct: 79 YLAALQGALTTLQQRFAPQLLIYLAGADPHEGDRLGKMKLSMAG 122
>gi|332141953|ref|YP_004427691.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
gi|410862358|ref|YP_006977592.1| histone deacetylase family protein [Alteromonas macleodii AltDE1]
gi|327551975|gb|AEA98693.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
gi|410819620|gb|AFV86237.1| histone deacetylase family protein [Alteromonas macleodii AltDE1]
Length = 324
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 84/210 (40%), Gaps = 58/210 (27%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
KSS ++ + L + GDGTA + + D +FT S+H +N+P+RKQ SD ID+G
Sbjct: 169 KSSAIDNVLIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPYRKQQSD----IDIG-- 222
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
L++ +E D E + L
Sbjct: 223 --------------LAKGTE---------------DDEYLQ--------------TLEQA 239
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
+ALA R I+ + DVH + L L G+Y RD V A
Sbjct: 240 LALAKRQFQPDAIIYDAGV---DVHVND------DLGHLHISTEGVYERDKIVFALAEQL 290
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
G+P+A V GGGY DI L ++RAA
Sbjct: 291 GVPIAAVIGGGYQRDIAALVDVHIQLYRAA 320
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFCL ND+ LAA+ + + + VLIVDLDVHQ
Sbjct: 144 HHAFADFGSGFCLFNDLYLAAKTMQKSSAIDNVLIVDLDVHQ 185
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 27 RLVHLPII-HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
+L+ P++ H + LP HRFP+ K+ + L+R + IDK++ I P + S+
Sbjct: 23 KLMTTPLVFHPIYSQLDLPERHRFPIEKYVGIRDELIR-RGIDKAR-FITPSPLDFSVLT 80
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+ ++YV +G +K + GF WS L R RT
Sbjct: 81 DNYDRQYVEALTSGNLDKKAMRRIGFPWSQQLIERTRT 118
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L QF+PD +IYDAGVD H +D+LG L+++ G
Sbjct: 232 YLQTLEQALALAKRQFQPDAIIYDAGVDVHVNDDLGHLHISTEG 275
>gi|418695445|ref|ZP_13256465.1| histone deacetylase family protein [Leptospira kirschneri str. H1]
gi|421108114|ref|ZP_15568658.1| histone deacetylase family protein [Leptospira kirschneri str. H2]
gi|409956899|gb|EKO15820.1| histone deacetylase family protein [Leptospira kirschneri str. H1]
gi|410006815|gb|EKO60552.1| histone deacetylase family protein [Leptospira kirschneri str. H2]
Length = 271
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ GTDD
Sbjct: 124 ILFIDLDLHQGNGNSFIFQDDPDVFTFSMHQENLYP-KKEKSDLDISLEEGTDD 176
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDLDLHQ 133
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEKSLHKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|386856560|ref|YP_006260737.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
gi|380000089|gb|AFD25279.1| Histone deacetylase superfamily [Deinococcus gobiensis I-0]
Length = 309
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D GFCL+ND AL R + G+ R+V ++DLDVHQ
Sbjct: 123 GTHHAFADRAEGFCLLNDAALLTRIALEEGVARRVAVLDLDVHQ 166
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 414 LPCYDGDGTAFIFDKDPAV---FTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
L + G+GTA + + A FT S+H RNYPFRK+ S LD+ + G DD
Sbjct: 162 LDVHQGNGTAALLAPEMAAGTAFTLSVHGERNYPFRKERSSLDLGLGDGIDD 213
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 38 KYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFF 97
Y LP HRFP K++ VRD ++ + ++E ++ + A VH ++ ++
Sbjct: 20 SYGFPLPEGHRFPYYKYAG-----VRD-LLRPALPVLETPALTWADAARVHDPLWLRRWR 73
Query: 98 NGKTTEKEQKVTGFEWSAGLASRVR 122
G+ EQ+ G WS G+ R R
Sbjct: 74 RGEVDRHEQRAFGLPWSPGVVERAR 98
>gi|383758207|ref|YP_005437192.1| hypothetical protein RGE_23520 [Rubrivivax gelatinosus IL144]
gi|381378876|dbj|BAL95693.1| hypothetical protein RGE_23520 [Rubrivivax gelatinosus IL144]
Length = 314
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 405 HRA--LIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
HRA ++ + L + G+GTA IF D +VFT S+H +N+PFRK+ SDLDV + G D
Sbjct: 149 HRAGLQVLVVDLDVHQGNGTASIFRDDASVFTLSLHGAKNFPFRKEASDLDVELPDGCAD 208
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV--HTKEY 92
H++++ LP H FPMSK+ L+R+ V Q+ + S EL H +
Sbjct: 5 HSDRFVLPLPAGHPFPMSKYR-----LLREAVAATLPQIAVEAAPAASDGELALAHEPAW 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+ +G T+ +Q+ GF WS +A R R
Sbjct: 60 IDAVSHGTTSAAQQREIGFPWSEAMAERAR 89
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS----THHAFPDHGAG 515
T A R + W +++R+ + I L D + + THHA+ G+G
Sbjct: 68 TSAAQQREIGFPWSEAMAERARRSVGATIAAARAALFDGDGVAANLAGGTHHAYAHKGSG 127
Query: 516 FCLMNDMALAARYLI-------RHGIVRKVLIVDLDVHQ 547
+C+ ND+A+AAR + R G+ +VL+VDLDVHQ
Sbjct: 128 YCVFNDVAVAARLMQAEWHRMHRAGL--QVLVVDLDVHQ 164
>gi|260060958|ref|YP_003194038.1| Histone deacetylase superfamily protein [Robiginitalea biformata
HTCC2501]
gi|88785090|gb|EAR16259.1| Histone deacetylase superfamily protein [Robiginitalea biformata
HTCC2501]
Length = 300
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA IF ++P VFT+SMH NYPFRK+ SD DV + T D
Sbjct: 151 ILMLDLDVHQGNGTAAIFREEPRVFTYSMHGQSNYPFRKEVSDWDVPLAKQTGD 204
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D G FC++ND A+ A +L+ + + ++L++DLDVHQ
Sbjct: 117 GTHHAYRDRGEAFCMLNDQAIGACHLLANNLAERILMLDLDVHQ 160
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL+ HL + AQ +PD V Y GVD D+LG L LT G
Sbjct: 207 YLTTLETHLENLYAQVRPDFVFYLCGVDVLATDKLGTLALTPEG 250
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 39 YECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN 98
Y LP HRFPM K+ L+ + + + P +S H Y
Sbjct: 10 YAHPLPEGHRFPMQKYELLPQQLLHEGTAEH-ENFFTPGLPEDSEILRAHDAAYFEDLQT 68
Query: 99 GKTTEKEQKVTGFEWSAGLASRVRT 123
G+ +E + GF WS L R RT
Sbjct: 69 GRIPPREMRKVGFPWSEALVLRERT 93
>gi|94970928|ref|YP_592976.1| histone deacetylase superfamily protein [Candidatus Koribacter
versatilis Ellin345]
gi|94552978|gb|ABF42902.1| histone deacetylase superfamily [Candidatus Koribacter versatilis
Ellin345]
Length = 357
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 34/42 (80%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+PDHG GFC+++D+A+A R L + G +++V+ +D DVHQ
Sbjct: 142 HHAYPDHGEGFCMIHDVAVAIRKLQKQGRIQRVMTLDCDVHQ 183
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
S Y A L + QF+PDL+ Y AG DP++ D+LG LNLT G
Sbjct: 257 SEYIAWLDNAISSGFRQFQPDLLCYIAGADPYKEDQLGGLNLTIDG 302
>gi|71066386|ref|YP_265113.1| hypothetical protein Psyc_1831, partial [Psychrobacter arcticus
273-4]
gi|71039371|gb|AAZ19679.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 133
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 410 MEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
M + L + G+G A I +P VF FSMH +N+PFRKQ SDLD+ +D T D
Sbjct: 1 MFVDLDVHQGNGNASIMADEPRVFVFSMHGAKNHPFRKQVSDLDIELDNDTGD 53
>gi|268532770|ref|XP_002631513.1| C. briggsae CBR-HDA-6 protein [Caenorhabditis briggsae]
Length = 505
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC+ N++A+AA+ +R G +KV+IVD DVH
Sbjct: 135 HHAMPDEGCGFCIFNNVAIAAKEALRCGFAKKVMIVDYDVH 175
>gi|297567404|ref|YP_003686376.1| histone deacetylase [Meiothermus silvanus DSM 9946]
gi|296851853|gb|ADH64868.1| Histone deacetylase [Meiothermus silvanus DSM 9946]
Length = 299
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+AL+++ L + G+GTA F D VFT S+H RNYP RK+ SDLDV + GT D
Sbjct: 146 KALVVD--LDAHQGNGTAVFFQNDSYVFTLSLHGERNYPLRKEKSDLDVGLPDGTAD 200
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+PD G+ L ND+A+A L G K L+VDLD HQ
Sbjct: 113 GTHHAYPDRAEGYSLFNDVAVALANLRAEGFGGKALVVDLDAHQ 156
>gi|241663209|ref|YP_002981569.1| histone deacetylase superfamily protein [Ralstonia pickettii 12D]
gi|240865236|gb|ACS62897.1| histone deacetylase superfamily [Ralstonia pickettii 12D]
Length = 335
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 124/324 (38%), Gaps = 52/324 (16%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAE 85
++H+ +T+ + LPP HRFPM K+S +R +V++ L E + +
Sbjct: 13 VIHMRAFYTDHFVLPLPPGHRFPMRKYSD-----LRARVLEDVPGLSMHEAPRADDDALL 67
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAVYLP 136
L HT EYV G+ Q+ GF WS + R R D IAV L
Sbjct: 68 LAHTTEYVCAVSAGRLDPARQREIGFPWSPEMVERSRRSAGATMAACDAALADGIAVNLA 127
Query: 137 FFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQP 193
+ D V D + ++ R P F +A V D+ G T
Sbjct: 128 GGTHH--AYADKGGGFCVFNDAAIASRWIQRQSGRTPGDFPVAIVDLDVHQ---GNGTAS 182
Query: 194 VSGYQATL-------KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSS 246
+ AT+ +++ P F+ + D G+ DE LT + ++
Sbjct: 183 ILRDDATVFTLSLHGEKNYP-----FRKEASDLDVGLHDGCGDEDYLQALTGALDILAGR 237
Query: 247 AR---ISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRR-PV 302
+ I AG DPH+ D LG+L LT G L R V F QRR PV
Sbjct: 238 FKPQLIIYLAGADPHEGDRLGRLKLTLQG----LARRDQEV--------FDFAYQRRIPV 285
Query: 303 FFDIAAVLADLIHFMVGINTQPVS 326
+A + I V ++ Q ++
Sbjct: 286 AVTMAGGYGNNIDDTVAVHAQTIA 309
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I D VFT S+H +NYPFRK+ SDLDV + G D
Sbjct: 170 VDLDVHQGNGTASILRDDATVFTLSLHGEKNYPFRKEASDLDVGLHDGCGD 220
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + L+D +N THHA+ D G GFC+
Sbjct: 84 DPARQREIGFPWSPEMVERSRRSAGATMAACDAALADGIAVNLAGGTHHAYADKGGGFCV 143
Query: 519 MNDMALAARYLIRHGIVR----KVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPG 566
ND A+A+R++ R V IVDLDVHQ T SI TV + + G
Sbjct: 144 FNDAAIASRWIQRQSGRTPGDFPVAIVDLDVHQGNGTASILRDDATVFTLSLHG 197
>gi|330830255|ref|YP_004393207.1| histone deacetylase/AcuC/AphA family protein [Aeromonas veronii
B565]
gi|423209075|ref|ZP_17195629.1| hypothetical protein HMPREF1169_01147 [Aeromonas veronii AER397]
gi|328805391|gb|AEB50590.1| Histone deacetylase/AcuC/AphA family protein [Aeromonas veronii
B565]
gi|404618920|gb|EKB15840.1| hypothetical protein HMPREF1169_01147 [Aeromonas veronii AER397]
Length = 298
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 454 VAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST----HHAF 509
A+ +D R + W L++R+ +R+ G + R + + HHA
Sbjct: 63 AALSGQLEDRAIRKIGFPWSPMLTERT--LRSVGATVAASRHALEQGCGLQISGGYHHAH 120
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
DHG+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 121 RDHGSGFCLFNDLVIAAQACLDEGRCEQVLIVDLDVHQ 158
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 70/193 (36%), Gaps = 60/193 (31%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDDAGNRT 467
++ + L + GDG+A + + T S+H N+P K S LD + G TDDA
Sbjct: 149 VLIVDLDVHQGDGSAALCAGRRDIITLSLHGEHNFPHHKATSHLDFPLPSGMTDDA---- 204
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
++T L Q LRL P++ +
Sbjct: 205 ----YLTTLQQ---------ALSLALRLYSPDLILYQA---------------------- 229
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
+DVH L LS G+ +RD V D A+ G+P+A
Sbjct: 230 --------------GVDVHH------ADELGYLSLSDEGVRLRDAMVFDCAVQHGVPIAA 269
Query: 588 VTGGGYCADIDQL 600
V GGGY D QL
Sbjct: 270 VPGGGYRRDWQQL 282
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L L + PDL++Y AGVD H DELG L+L+D G
Sbjct: 205 YLTTLQQALSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEG 248
>gi|417950544|ref|ZP_12593664.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
ATCC 33789]
gi|342806327|gb|EGU41555.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
ATCC 33789]
Length = 306
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 102/255 (40%), Gaps = 45/255 (17%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFS---KTFNYLVRDKVIDKSK-QLIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ L+ + KSK ++ +P+ +S +
Sbjct: 2 IPLIYHPIYSQLPLPEGHRYPINKYQLLHSAVEALMDSDPLWKSKFEVFQPKPVSVEQVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLP 136
VH +YV +G + + GF WS L R + D +A++L
Sbjct: 62 QVHDSDYVDLLVSGSLPAAKMRRIGFPWSEQLIERTLYSSGGTCLAADMAIESGLAIHLS 121
Query: 137 F-FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFF--------DIAAVLADLIHFMV 187
+ F +L DL+ A + F Q V D A L ++
Sbjct: 122 GGYHHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVDSDVHHGDGTATLCQESDEII 181
Query: 188 GIN---------TQPVSGYQATLKEHLPG-------------ILAQFKPDLVIYDAGVDP 225
++ +P+S L +A +PDL+IYDAGVD
Sbjct: 182 TLSFHCDKNFPARKPLSDLDVPLNRETEDEEFLRCFEQVTKLAIAHHQPDLIIYDAGVDI 241
Query: 226 HQHDELGKLNLTDHG 240
HQ DELG LN++ G
Sbjct: 242 HQDDELGYLNVSTQG 256
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK SDLDV ++ T+D
Sbjct: 167 GDGTATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLNRETEDEE-------------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
LR + ++ + + H PD +
Sbjct: 213 -------------FLRCFE-QVTKLAIAHHQPD--------------------------L 232
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L L+ G++ RD ++++ A S IP+A V GGGY
Sbjct: 233 IIYDAGVDIHQDDE------LGYLNVSTQGIFERDCFMINLAKSESIPMACVVGGGY 283
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ LAA++ + V KVLIVD DVH
Sbjct: 125 HHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVDSDVH 165
>gi|300691346|ref|YP_003752341.1| histone deacetylase [Ralstonia solanacearum PSI07]
gi|299078406|emb|CBJ51057.2| Histone deacetylase [Ralstonia solanacearum PSI07]
Length = 324
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 124/319 (38%), Gaps = 58/319 (18%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R++V+ L+ E + + LVH +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERVMADVPGLVMHEAPRAGDDALLLVHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAVYLPFFLQRRP 143
V G+ Q+ GF WS + R R + T IAV L
Sbjct: 62 VSAVGAGRLDPARQREIGFPWSLAMVERSRRSAGATMAACEAAMTDGIAVNLAGGTHH-- 119
Query: 144 VFFDIAAVLADLICI---AVYLTFFLQRRPV----FFDIAAVLADLIHFMVGI-----NT 191
+ D C+ A + ++QRRP F +A V D +H G N
Sbjct: 120 AYADKGGGF----CVFNDAAIASRWIQRRPGRTPDGFPVAIVDLD-VHQGNGTASILRND 174
Query: 192 QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISS 251
V +++ P F+ + D G+ DE L G + +AR +
Sbjct: 175 ASVFTLSVHGEKNYP-----FRKEASDLDVGLPDGCGDEAYLEALA--GALDTLAARFAP 227
Query: 252 E-----AGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDI 306
AG DPH+ D LG+L LT G+ R D V+ L+R P+ +
Sbjct: 228 RLIIYLAGADPHEGDRLGRLKLTMEGLA-----RRDQ------QVFDFALLRRIPIAVTM 276
Query: 307 AAVLADLIHFMVGINTQPV 325
A + I V ++ Q +
Sbjct: 277 AGGYGNNIDDTVAVHAQTI 295
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G D
Sbjct: 157 VDLDVHQGNGTASILRNDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGD 207
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSLAMVERSRRSAGATMAACEAAMTDGIAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH------GIVRKVLIVDLDVHQ 547
ND A+A+R++ R G V IVDLDVHQ
Sbjct: 131 FNDAAIASRWIQRRPGRTPDGF--PVAIVDLDVHQ 163
>gi|423206155|ref|ZP_17192711.1| hypothetical protein HMPREF1168_02346 [Aeromonas veronii AMC34]
gi|404622660|gb|EKB19521.1| hypothetical protein HMPREF1168_02346 [Aeromonas veronii AMC34]
Length = 298
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 454 VAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST----HHAF 509
A+ +D R + W L +R+ +R+ G + R + + HHA
Sbjct: 63 AALSGQLEDRAIRKIGFPWSPMLMERT--LRSVGATIAASRYAIEQGCGLQISGGYHHAH 120
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
DHG+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 121 RDHGSGFCLFNDLVIAAQTCLDEGGCEQVLIVDLDVHQ 158
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L L + PDL++Y AGVD H DELG L+L+D G
Sbjct: 205 YLTTLQQALSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEG 248
>gi|388598754|ref|ZP_10157150.1| hypothetical protein VcamD_02518 [Vibrio campbellii DS40M4]
Length = 307
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 99/259 (38%), Gaps = 54/259 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK----QLIEPQQISESIAE 85
LP+I+ Y + LP HR+P+ K+ + V +K+ ++S + +P +S +
Sbjct: 2 LPLIYHPIYSQLDLPEGHRYPIMKYHH-LHQAVLEKLANESWGEQVEFFQPTSLSVDEVK 60
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH++EYV G + + GF WS L +R T T H IA++L
Sbjct: 61 RVHSEEYVDLLVTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGIAIHLS 120
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ-PVS 195
F L + + IA L V D ++ +H G T
Sbjct: 121 GGYHHAHKDFGSGFCLFNDLAIAA--KHMLDHEHV--DKVMIIDSDVHHGDGTATLCKDE 176
Query: 196 GYQATLKEH----LPG-------------------ILAQFK-----------PDLVIYDA 221
GY TL H P L FK PD+VIYDA
Sbjct: 177 GYIITLSFHCDKNFPARKPDSDLDVPFRRDTDDETFLMTFKEVVQMAINLHRPDMVIYDA 236
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVD H DELG N++ G
Sbjct: 237 GVDIHTDDELGYFNVSTEG 255
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 78/218 (35%), Gaps = 58/218 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ H +M I + GDGTA + + + T S HC +N+P RK SDLDV T
Sbjct: 148 LDHEHVDKVMIIDSDVHHGDGTATLCKDEGYIITLSFHCDKNFPARKPDSDLDVPFRRDT 207
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + + L P++
Sbjct: 208 DDE----------TFLMTFKE------VVQMAINLHRPDM-------------------- 231
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+I D V HT L + G++ RD +++
Sbjct: 232 ------------------VIYDAGVDIHTDD----ELGYFNVSTEGIFERDRFLMQLMKD 269
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
GIPVA V GGGY ++ L + AA VYK R
Sbjct: 270 RGIPVAAVVGGGYRSEHADLVPIHMQLIDAAERVYKHR 307
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +GI + L HHA D G+GFCL ND+A+
Sbjct: 94 TRTLTSTAGTVLT--AEKALEHGIAIHL---------SGGYHHAHKDFGSGFCLFNDLAI 142
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA++++ H V KV+I+D DVH
Sbjct: 143 AAKHMLDHEHVDKVMIIDSDVHH 165
>gi|94498520|ref|ZP_01305076.1| hypothetical protein SKA58_04476 [Sphingomonas sp. SKA58]
gi|94422063|gb|EAT07108.1| hypothetical protein SKA58_04476 [Sphingomonas sp. SKA58]
Length = 301
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY A L LP +L F PDL++Y AGVDPH D LG+L LTD G
Sbjct: 208 GYMAVLTYALPRVLDDFAPDLILYQAGVDPHGEDRLGRLELTDAG 252
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI G + +LI+DLDVHQ
Sbjct: 119 GSHHALHDTGAGYCVFNDLAIAATRLIAEGDAKHILILDLDVHQ 162
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTA + VFT S+H RN+P RK S LD+ ++ G DD G V
Sbjct: 153 ILILDLDVHQGDGTAALMAGRTDVFTLSIHAERNFPVRKARSSLDIGLEDGIDDHGYMAV 212
>gi|372210259|ref|ZP_09498061.1| histone deacetylase [Flavobacteriaceae bacterium S85]
Length = 300
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 396 GCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
G T +K+ ++ + L + G+GTA IF P VFTFSMH NYPF K+ SDLD+
Sbjct: 138 GATYLLKNRLAKKVLIVDLDVHQGNGTAEIFRNTPEVFTFSMHGKHNYPFEKEISDLDIG 197
Query: 456 IDVG-TDD 462
++ TDD
Sbjct: 198 LENNCTDD 205
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ + FC +ND A+ A YL+++ + +KVLIVDLDVHQ
Sbjct: 117 GTHHAYSNRPDPFCYLNDQAVGATYLLKNRLAKKVLIVDLDVHQ 160
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y +TLK+ LP +L + +PD V Y +GVD D+LGKL + G
Sbjct: 207 YLSTLKQVLPKLLKEQQPDFVFYQSGVDILASDKLGKLACSIEG 250
>gi|372489509|ref|YP_005029074.1| deacetylase [Dechlorosoma suillum PS]
gi|359356062|gb|AEV27233.1| deacetylase, histone deacetylase/acetoin utilization protein
[Dechlorosoma suillum PS]
Length = 300
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ GDGTA I + D +VFTFS+H RNYPF K SDLD+ + G DDA
Sbjct: 157 HQGDGTARILEGDASVFTFSIHGARNYPFAKARSDLDIELPDGCDDA 203
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKS---KQLIEPQQISESIAELV 87
+ + +++ + LPP HRFPM K+++ +R ++D+ I P+ S
Sbjct: 1 MQLFYSDTFVLPLPPGHRFPMEKYAR-----LRQTLLDEGYPPADFILPEAASREDLCRA 55
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
H YV + +G+ T +E + GF WS + R R
Sbjct: 56 HDPAYVERVCSGRLTPEEMRQIGFPWSDAMVERPR 90
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y A L++ L + ++ +P L IY AG DP+ D LG+L+LT G
Sbjct: 203 AAYLAALEQGLADLFSRCRPQLAIYLAGADPYAGDRLGRLSLTMAG 248
>gi|373957064|ref|ZP_09617024.1| histone deacetylase superfamily [Mucilaginibacter paludis DSM
18603]
gi|373893664|gb|EHQ29561.1| histone deacetylase superfamily [Mucilaginibacter paludis DSM
18603]
Length = 300
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA + G GFC++ND A+AA YL+ + VLIVDLDVHQ
Sbjct: 117 GTHHAGSNWGEGFCMLNDQAIAANYLLAEKLATSVLIVDLDVHQ 160
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 99/255 (38%), Gaps = 57/255 (22%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L I + Y LP HRFPM K+ L+ + VI S L P + E+ L H K
Sbjct: 2 LKIAYHPIYAHPLPEGHRFPMLKYELIPQQLLHEGVI-TSDNLFSPDAVDEATILLSHQK 60
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASR-VRTDPVPTHVIAVYLPFFLQRRPVFFDIA 149
+Y + + + KEQ+ GF SA L R VR + Y F V F++A
Sbjct: 61 DYWEQLRDLTLSAKEQRRIGFPLSARLVEREVRI--AKGTIDGCYFAF---EHGVAFNVA 115
Query: 150 -------AVLADLICI----AVYLTFFLQRRPVFFDIAAVLADL-IH------------- 184
+ + C+ A+ + L + + ++ DL +H
Sbjct: 116 GGTHHAGSNWGEGFCMLNDQAIAANYLLAEK---LATSVLIVDLDVHQGNGTAQIFENES 172
Query: 185 -----FMVGINTQPVSGYQATL-----------------KEHLPGILAQFKPDLVIYDAG 222
M G N P ++ L K LP ++ Q KPD + Y AG
Sbjct: 173 RVFTFSMHGANNFPSRKEKSDLDLPLPDGTSDDQFLSLLKNTLPQLIEQQKPDFIFYLAG 232
Query: 223 VDPHQHDELGKLNLT 237
VD + D+LGKL L+
Sbjct: 233 VDVLESDKLGKLALS 247
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA IF+ + VFTFSMH N+P RK+ SDLD+ + GT D
Sbjct: 151 VLIVDLDVHQGNGTAQIFENESRVFTFSMHGANNFPSRKEKSDLDLPLPDGTSD 204
>gi|418678733|ref|ZP_13240007.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687687|ref|ZP_13248846.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418741912|ref|ZP_13298285.1| histone deacetylase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421129283|ref|ZP_15589484.1| histone deacetylase family protein [Leptospira kirschneri str.
2008720114]
gi|400321923|gb|EJO69783.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410359479|gb|EKP06577.1| histone deacetylase family protein [Leptospira kirschneri str.
2008720114]
gi|410738011|gb|EKQ82750.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750270|gb|EKR07250.1| histone deacetylase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 302
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +F+F DP VFTFSMH YP +K+ SDLD++++ GTDD
Sbjct: 155 ILFIDLDLHQGNGNSFVFQDDPDVFTFSMHQENLYP-KKEKSDLDISLEEGTDD 207
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ
Sbjct: 123 HHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDLDLHQ 164
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y LK+ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 210 YLELLKKSLHKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 253
>gi|374584482|ref|ZP_09657574.1| histone deacetylase superfamily [Leptonema illini DSM 21528]
gi|373873343|gb|EHQ05337.1| histone deacetylase superfamily [Leptonema illini DSM 21528]
Length = 313
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF DH GFC +ND+A+A R L + +++ LI+DLDVHQ
Sbjct: 136 HHAFADHAEGFCYLNDVAIAVRVLQKQKRIKRALIIDLDVHQ 177
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
K RALI I L + G+GTA IF VFTFSMH +NYP +++ S LD+ +D
Sbjct: 163 KRIKRALI--IDLDVHQGNGTAKIFRHSRHVFTFSMHEEKNYPIKEKGS-LDIGLDSAMH 219
Query: 462 D 462
D
Sbjct: 220 D 220
>gi|421090451|ref|ZP_15551243.1| histone deacetylase family protein [Leptospira kirschneri str.
200802841]
gi|410000665|gb|EKO51293.1| histone deacetylase family protein [Leptospira kirschneri str.
200802841]
Length = 271
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +F+F DP VFTFSMH YP +K+ SDLD++++ GTDD
Sbjct: 124 ILFIDLDLHQGNGNSFVFQDDPDVFTFSMHQENLYP-KKEKSDLDISLEEGTDD 176
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDLDLHQ 133
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y LK+ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLKKSLHKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|156975305|ref|YP_001446212.1| hypothetical protein VIBHAR_03035 [Vibrio harveyi ATCC BAA-1116]
gi|156526899|gb|ABU71985.1| hypothetical protein VIBHAR_03035 [Vibrio harveyi ATCC BAA-1116]
Length = 307
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 79/218 (36%), Gaps = 58/218 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ H +M I + GDGTA + + + T S HC +N+P RK SDLDV + T
Sbjct: 148 LDHEHVDKVMIIDSDVHHGDGTATLCKDEADIITLSFHCDKNFPARKPDSDLDVPLRRDT 207
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + + L P++
Sbjct: 208 DDE----------TFLMTFKE------VVQMAINLHRPDM-------------------- 231
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+I D V HT L + G++ RD +++
Sbjct: 232 ------------------VIYDAGVDIHTDD----ELGYFNVSTKGIFERDRFLMQLMKD 269
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
GIPVA V GGGY ++ L + AA VYK R
Sbjct: 270 RGIPVAAVVGGGYRSEHADLVPIHMQLIDAAERVYKHR 307
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 100/259 (38%), Gaps = 54/259 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK----QLIEPQQISESIAE 85
LP+I+ Y + LP HR+P+ K+ + V +K+ ++S + +P +S +
Sbjct: 2 LPLIYHPIYSQLDLPEGHRYPIMKYHH-LHQAVLEKLANESWGEQVEFFQPTSLSVDEVK 60
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH++EYV G + + GF WS L +R T T H IA++L
Sbjct: 61 RVHSEEYVDLLVAGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGIAIHLS 120
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT----- 191
F L + + IA L V D ++ +H G T
Sbjct: 121 GGYHHAHKDFGSGFCLFNDLAIAA--KHMLDHEHV--DKVMIIDSDVHHGDGTATLCKDE 176
Query: 192 -----------------QPVSG-------------YQATLKEHLPGILAQFKPDLVIYDA 221
+P S + T KE + + +PD+VIYDA
Sbjct: 177 ADIITLSFHCDKNFPARKPDSDLDVPLRRDTDDETFLMTFKEVVQMAINLHRPDMVIYDA 236
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVD H DELG N++ G
Sbjct: 237 GVDIHTDDELGYFNVSTKG 255
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +GI + L HHA D G+GFCL ND+A+
Sbjct: 94 TRTLTSTAGTVLT--AEKALEHGIAIHL---------SGGYHHAHKDFGSGFCLFNDLAI 142
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA++++ H V KV+I+D DVH
Sbjct: 143 AAKHMLDHEHVDKVMIIDSDVHH 165
>gi|441502098|ref|ZP_20984109.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
AK15]
gi|441429845|gb|ELR67296.1| Histone deacetylase/AcuC/AphA family protein [Photobacterium sp.
AK15]
Length = 311
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 58/208 (27%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M I + GDGTA + +P + TFS+HC +N+P RK SD+D +
Sbjct: 155 VMIIDCDVHQGDGTATLLADEPNIITFSVHCDKNFPARKPDSDID--------------L 200
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
AL T ++ E F +L L A H F L +
Sbjct: 201 ALPKSTTTNEYIET------FESILNL------------ALAQHQPDFILYD-------- 234
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D+H+ L + G++ RD VL+ S IP+A V
Sbjct: 235 ------------AGVDIHKDDE------LGYFDISLNGIFERDRLVLNHCHSDRIPIAAV 276
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYK 616
GGGY D QL + T + AA VY+
Sbjct: 277 VGGGYRKDHQQLIKLHTQLVHAAIAVYQ 304
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 49/256 (19%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYL-----VRDKVIDKSKQLIEPQQISESIA 84
LP+++ Y + LP HR+P++K+ ++YL + ++ I Q P I
Sbjct: 2 LPLVYHPIYSQLDLPEGHRYPITKYRLLYDYLNCELNITNRAITAFHQ---PIPIEAHEL 58
Query: 85 ELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGL---------ASRVRTDPVPTHVIAVYL 135
+ +H +Y+ N + + GF WS L +R+ D H I ++L
Sbjct: 59 KSLHCPDYIEALVNNSLPAAKMRRIGFPWSQQLIDRTLMSAAGTRLTVDLAFEHGIGIHL 118
Query: 136 PFFLQRRPVFFDIAAVLADLICIAV--YLTFFLQRRPVFFD--------IAAVLAD---L 182
F L + + A LT + + D A +LAD +
Sbjct: 119 SGGYHHAHHDFGSGFCLINDLAFAARHALTLDGIEKVMIIDCDVHQGDGTATLLADEPNI 178
Query: 183 IHFMVGIN------------------TQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVD 224
I F V + + + Y T + L LAQ +PD ++YDAGVD
Sbjct: 179 ITFSVHCDKNFPARKPDSDIDLALPKSTTTNEYIETFESILNLALAQHQPDFILYDAGVD 238
Query: 225 PHQHDELGKLNLTDHG 240
H+ DELG +++ +G
Sbjct: 239 IHKDDELGYFDISLNG 254
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+A AAR+ + + KV+I+D DVHQ
Sbjct: 123 HHAHHDFGSGFCLINDLAFAARHALTLDGIEKVMIIDCDVHQ 164
>gi|300703916|ref|YP_003745518.1| histone deacetylase [Ralstonia solanacearum CFBP2957]
gi|299071579|emb|CBJ42903.1| Histone deacetylase [Ralstonia solanacearum CFBP2957]
Length = 324
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R+++ + L+ E + + L H +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERIAAEVPGLVLHEAPRAGDDALLLAHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
VH GK Q+ GF WS+ + R R
Sbjct: 62 VHAVGAGKLDPARQREIGFPWSSAMVERSR 91
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSLHGEKNYPFRKEVSDLDVGLPDGCGDA 208
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D A R + W + + +RS + + ++D + THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSSAMVERSRRSAGATMAACEAAMADGTAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+A+R++ R G + V IVDLDVHQ
Sbjct: 131 FNDAAIASRWMQRRPGRAPEDFPVAIVDLDVHQ 163
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y L L + A+F P L+IY AG DPH+ D LG+L LT G
Sbjct: 208 AAYLEALAGALDTLAARFAPRLIIYLAGADPHEGDRLGRLKLTMDG 253
>gi|219109741|ref|XP_002176624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411159|gb|EEC51087.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 294
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVHQ 547
THHAF D G GFC+ +DMA+AA +++ G+VR++L +DLDVHQ
Sbjct: 131 GTHHAFYDRGEGFCVFSDMAVAANVVMKRYPGVVRRILFLDLDVHQ 176
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 98/267 (36%), Gaps = 58/267 (21%)
Query: 32 PIIHTNKYECTLPPNHRFPMSKFSKT---FNYLVRDKVIDKSKQLIEPQQIS--ESIAEL 86
PI + + YE LP NHRFPM K+ + +++ +D+ + ++S SI EL
Sbjct: 1 PIYYNDVYEVKLPKNHRFPMEKYGRVRQLVQQWLQNLPVDEQGVVNYEFRVSPLSSIDEL 60
Query: 87 --VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRP- 143
H YV +F G E+E + GF WS R + T A + R P
Sbjct: 61 TTTHDPAYVQRFLTGDQDERELRNVGFPWSQSNVDRSLSSTGGTVAAACAVVQARLRDPY 120
Query: 144 --------------VFFDIAAVLADLICIAVYLTFFLQRRP------------------- 170
F+D +AV ++R P
Sbjct: 121 GLHWGAHVAGGTHHAFYDRGEGFCVFSDMAVAANVVMKRYPGVVRRILFLDLDVHQGNGN 180
Query: 171 --VFFDIAAVLADLIHFMVGINTQPVSG--------------YQATLKEHLPGILAQFKP 214
+F D +V +H ++ + Y TLK L I + +P
Sbjct: 181 ALLFRDNDSVFTFSLHCSANYFSEKQNSDLDIELPPECSDETYLVTLKHWLNRIEREAEP 240
Query: 215 -DLVIYDAGVDPHQHDELGKLNLTDHG 240
DLV + AGVD D LG+++LT G
Sbjct: 241 FDLVFFQAGVDVLAQDRLGRMSLTPVG 267
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + G+G A +F + +VFTFS+HC NY KQ SDLD+ + D
Sbjct: 167 ILFLDLDVHQGNGNALLFRDNDSVFTFSLHCSANYFSEKQNSDLDIELPPECSDETYLVT 226
Query: 469 ALTWVTFLSQRSE 481
W+ + + +E
Sbjct: 227 LKHWLNRIEREAE 239
>gi|153833853|ref|ZP_01986520.1| histone deacetylase/AcuC/AphA family protein [Vibrio harveyi HY01]
gi|148869795|gb|EDL68769.1| histone deacetylase/AcuC/AphA family protein [Vibrio harveyi HY01]
Length = 307
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 79/218 (36%), Gaps = 58/218 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ H +M I + GDGTA + + + T S HC +N+P RK SDLDV + T
Sbjct: 148 LDHEHVDKVMIIDSDVHHGDGTATLCKDEADIITLSFHCDKNFPARKPDSDLDVPLRRDT 207
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + + L P++
Sbjct: 208 DDE----------TFLMTFKE------VVQMAINLHRPDM-------------------- 231
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+I D V HT L + G++ RD +++
Sbjct: 232 ------------------VIYDAGVDIHTDD----ELGYFNVSTKGIFERDRFLMQLMKD 269
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
GIPVA V GGGY ++ L + AA VYK R
Sbjct: 270 RGIPVAAVVGGGYRSEHADLVPIHMQLIDAAERVYKHR 307
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +GI + L HHA D G+GFCL ND+A+
Sbjct: 94 TRTLTSTAGTVLT--AEKALEHGIAIHL---------SGGYHHAHKDFGSGFCLFNDLAI 142
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA++++ H V KV+I+D DVH
Sbjct: 143 AAKHMLDHEHVDKVMIIDSDVHH 165
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 94/258 (36%), Gaps = 52/258 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIE---PQQISESIAEL 86
LP+I+ Y + LP HR+P+ K+ +V + IE P +S +
Sbjct: 2 LPLIYHPIYSQLDLPEGHRYPIMKYHHLHQAVVEKLGSEDWGGKIEFFQPTPLSTDEIKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF 137
VH +EYV G + + GF WS L +R T T H IA++L
Sbjct: 62 VHCEEYVDLLVTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGIAIHLSG 121
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------ 191
F L + + IA L V D ++ +H G T
Sbjct: 122 GYHHAHKDFGSGFCLFNDLAIAA--KHMLDHEHV--DKVMIIDSDVHHGDGTATLCKDEA 177
Query: 192 ----------------QPVSG-------------YQATLKEHLPGILAQFKPDLVIYDAG 222
+P S + T KE + + +PD+VIYDAG
Sbjct: 178 DIITLSFHCDKNFPARKPDSDLDVPLRRDTDDETFLMTFKEVVQMAINLHRPDMVIYDAG 237
Query: 223 VDPHQHDELGKLNLTDHG 240
VD H DELG N++ G
Sbjct: 238 VDIHTDDELGYFNVSTKG 255
>gi|260779262|ref|ZP_05888154.1| histone deacetylase/AcuC/AphA family protein [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605426|gb|EEX31721.1| histone deacetylase/AcuC/AphA family protein [Vibrio
coralliilyticus ATCC BAA-450]
Length = 308
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 97/261 (37%), Gaps = 63/261 (24%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI----EPQQISESIAE 85
+P+I+ + Y E LP HR+P+ K+ FN + + + D+ Q EPQ ++
Sbjct: 2 IPLIYHSIYSELPLPQGHRYPIHKYRLLFNEIEKVRFRDEQWQAFFHYCEPQALTSEEVM 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
H ++YV + F+G + GF WS L R T T H +A++L
Sbjct: 62 KTHCEQYVSELFSGGLPAARMRRIGFPWSECLIERTLTSAGGTCLTAEKAIEHGVAIHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVL---ADLIHFMVGINTQP 193
+D + C+ L +R I VL +D+ H G T
Sbjct: 122 GGYHH--AHYDFGSGF----CLLNDLVLAAKRALTHEGIEKVLIVDSDVHH---GDGTAT 172
Query: 194 VSGYQ---ATLKEHLPGILAQFKPD----------------------------------L 216
+ Q TL H KPD L
Sbjct: 173 LCADQDDIVTLSFHCDKNFPARKPDSDMDVALPRETSDEEFLSSFASVVEMAINLHQPDL 232
Query: 217 VIYDAGVDPHQHDELGKLNLT 237
++YDAGVD HQ DELG N++
Sbjct: 233 ILYDAGVDIHQDDELGYFNVS 253
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA+ + H + KVLIVD DVH
Sbjct: 125 HHAHYDFGSGFCLLNDLVLAAKRALTHEGIEKVLIVDSDVHH 166
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 58/200 (29%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + T S HC +N+P RK SD+DVA+ T D FLS
Sbjct: 167 GDGTATLCADQDDIVTLSFHCDKNFPARKPDSDMDVALPRETSDE----------EFLSS 216
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + + L P++ + AG
Sbjct: 217 FA------SVVEMAINLHQPDLILYD---------AG----------------------- 238
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+D+HQ L + +Y RD + + A + +P+ V GGGY D
Sbjct: 239 ----VDIHQDDE------LGYFNVSTQAIYQRDVAMFELAKANVLPIGCVVGGGYRTDHS 288
Query: 599 QLAQRQTIIHRAATHVYKER 618
+L + AA Y +
Sbjct: 289 ELVPIHMQLLNAAFQAYGNQ 308
>gi|410642129|ref|ZP_11352647.1| histone deacetylase 11 [Glaciecola chathamensis S18K6]
gi|410138446|dbj|GAC10834.1| histone deacetylase 11 [Glaciecola chathamensis S18K6]
Length = 318
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L QRS + L L + + HHAF + GAGFCL
Sbjct: 91 DPKAMRRIGFPWSEQLIQRSLTAVAGTVMTSTLALEQGKALNLTGGYHHAFANFGAGFCL 150
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+ LAA +++ + KVLI D DVHQ
Sbjct: 151 FNDLYLAALNMLQASAINKVLIFDCDVHQ 179
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+ GDGTA + +P VFT S+H +N+P RKQ SDLD + GT D TV
Sbjct: 178 HQGDGTAKLASNNPKVFTVSLHGEKNFPHRKQVSDLDFPLAKGTTDDEYLTV 229
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 565 PGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
PG+Y RD V D G+PVA V GGGY DI L ++RAA
Sbjct: 268 PGVYARDCMVFDACSKQGVPVAAVIGGGYQRDISALVDVHLQLYRAA 314
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L+ V Q +P ++ S + V++ +Y
Sbjct: 24 VFHPIYSQLDLPFKHRFPIEKYQAIYDRLISLGV--PKAQFYQPDALTPSQLKRVYSPDY 81
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G K + GF WS L R T
Sbjct: 82 VNGLTQGVLDPKAMRRIGFPWSEQLIQRSLT 112
>gi|332184978|ref|ZP_08386727.1| histone deacetylase domain protein [Sphingomonas sp. S17]
gi|332014702|gb|EGI56758.1| histone deacetylase domain protein [Sphingomonas sp. S17]
Length = 307
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA L+ GIV ++ IVD DVHQ
Sbjct: 115 GSHHALADTGAGYCVFNDLAVAAVRLVEEGIVSRIAIVDCDVHQ 158
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 416 CYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN-RTVALTWVT 474
+ GDGTA + + T+S+H +N+P RK S LDV + G DD G + T V
Sbjct: 156 VHQGDGTAALTAGRADIVTYSIHAEKNFPARKARSTLDVGLSDGVDDDGYLERLETTLVP 215
Query: 475 FLSQRSEKM 483
FL + + ++
Sbjct: 216 FLEEHTPEL 224
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 53/253 (20%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTK 90
I+H Y P + K N +RD + + + ++ EP+ I + E VH
Sbjct: 4 IVHHPAYVTEAPARSTYRWGK-----NGAIRDLLRARGEDIVWTEPELIPPAWLEAVHDP 58
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTH---VIAVYLPFFLQRRP---- 143
+YV + + ++ + GF + +A R R P T ++A+ F
Sbjct: 59 DYVAEVLEARVPPEKTRRIGFPVTEQVAYRARAVPGGTWTAAMLALEHGFAANTAGGSHH 118
Query: 144 VFFDIAA---VLADLICIAVYLTF-FLQRRPVFFD-----------IAAVLADLIHFMV- 187
D A V DL AV L + R D + A AD++ + +
Sbjct: 119 ALADTGAGYCVFNDLAVAAVRLVEEGIVSRIAIVDCDVHQGDGTAALTAGRADIVTYSIH 178
Query: 188 --------------------GINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQ 227
G++ GY L+ L L + P+L++Y AGVDP
Sbjct: 179 AEKNFPARKARSTLDVGLSDGVDDD---GYLERLETTLVPFLEEHTPELILYQAGVDPFA 235
Query: 228 HDELGKLNLTDHG 240
D LG+L +++ G
Sbjct: 236 GDRLGRLAVSEEG 248
>gi|398339724|ref|ZP_10524427.1| histone deacetylase [Leptospira kirschneri serovar Bim str. 1051]
Length = 293
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +F+F DP VFTFSMH YP +K+ SDLD++++ GTDD
Sbjct: 146 ILFIDLDLHQGNGNSFVFQDDPDVFTFSMHQENLYP-KKEKSDLDISLEEGTDD 198
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ
Sbjct: 114 HHSMPDRAEGFCYLNDAAIASKLYQKEYPGKKILFIDLDLHQ 155
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y LK+ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 201 YLELLKKSLHKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 244
>gi|218528759|ref|YP_002419575.1| histone deacetylase superfamily protein [Methylobacterium
extorquens CM4]
gi|218521062|gb|ACK81647.1| histone deacetylase superfamily [Methylobacterium extorquens CM4]
Length = 297
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RALI++ L + GDGTA ++P +FT S+HC RNYP K DLD+ + VG DDA
Sbjct: 149 RALIVD--LDVHQGDGTADCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPVGLDDA 204
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LP ++ F PDL+ Y+AGVDPH+ D LG+L LTD G
Sbjct: 206 YCAVLEARLPALIQNFAPDLIFYNAGVDPHRDDRLGRLCLTDAG 249
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + LIVDLDVHQ
Sbjct: 116 GSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQ 159
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD YV+ A S IP+ V GGGY D+D LA R ++ A
Sbjct: 249 GLLARDRYVVGLAQSQRIPLCAVIGGGYGNDVDALAARHALVFEA 293
>gi|227539670|ref|ZP_03969719.1| possible histone deacetylase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240312|gb|EEI90327.1| possible histone deacetylase [Sphingobacterium spiritivorum ATCC
33300]
Length = 334
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA +G GFCL+ND A+AA YL+ V K+LI+DLDVHQ
Sbjct: 150 GTHHAGHAYGEGFCLLNDQAIAAAYLLAEQKVHKILIIDLDVHQ 193
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H+ LI I L + G+GTA IF VFTFSMH +N+PF K+ S LD+ ++ G D
Sbjct: 182 HKILI--IDLDVHQGNGTANIFKGSKEVFTFSMHGAKNFPFIKEQSHLDINLEDGITDK- 238
Query: 465 NRTVALTWV 473
N LT V
Sbjct: 239 NYLSQLTTV 247
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 22 KSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISE 81
+ Q++ V L I N Y L HRFPM K+ L+ + ++ K EP+ ISE
Sbjct: 26 RHQIENFVLLKIAFHNAYIHPLREGHRFPMLKYELIPMQLIHEGLVSKDS-FFEPELISE 84
Query: 82 SIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
IA L H + YV F + + GF + L R R
Sbjct: 85 EIACLAHDESYVRDLFELTLDARMIRRIGFPLTDSLIRRER 125
>gi|212557470|gb|ACJ29924.1| Histone deacetylase/AcuC/AphA family protein [Shewanella
piezotolerans WP3]
Length = 306
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 58/199 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA + T S+HC N+P RKQ S+ D+ + GT D +L
Sbjct: 160 HQGDGTATTASAFDKIITCSIHCQHNFPARKQQSNYDIELPRGTTDK----------YYL 209
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
S+ + +L+RL P++
Sbjct: 210 ETVSQTLS------YLIRLHQPDL------------------------------------ 227
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+I D V HT +L + G++ RD V+ A SA IP+A V GGGY +
Sbjct: 228 --IIYDAGVDIHTDD----NLGYFNISTEGIFARDKVVIQQAYSAKIPIACVIGGGYSNE 281
Query: 597 IDQLAQRQTIIHRAATHVY 615
QL R + + AA V+
Sbjct: 282 QHQLNIRHSQLFLAANTVF 300
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+I+ Y + LP HRFP +K+ + YL++ + +S+ Q +++AE H
Sbjct: 2 LPLIYHASYSKLALPSKHRFPATKYLYLYQYLLQQGIAKQSQFFAAEQVTPKALAE-THC 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+YV +F NG K + GF WS L +R
Sbjct: 61 ADYVSRFINGTLDTKSIRRIGFPWSESLVART 92
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA G+GFC+ ND+ AA+ ++ + VLI D DVHQ
Sbjct: 120 HHAHHRFGSGFCIFNDLTYAAQQALKQPGIDNVLIFDCDVHQ 161
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y T+ + L ++ +PDL+IYDAGVD H D LG N++ G
Sbjct: 208 YLETVSQTLSYLIRLHQPDLIIYDAGVDIHTDDNLGYFNISTEG 251
>gi|341616230|ref|ZP_08703099.1| hypothetical protein CJLT1_14807 [Citromicrobium sp. JLT1363]
Length = 320
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L HLP +L F PD+V+Y AGVDPH +D+LG+L L+D G
Sbjct: 195 YLAVLDAHLPRLLDDFAPDIVLYQAGVDPHANDKLGRLALSDSG 238
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAGFC+ ND+A+ A LI +VLIVD DVHQ
Sbjct: 105 GSHHALYDTGAGFCVFNDLAVCANRLIGEAQADRVLIVDCDVHQ 148
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG 459
G + R LI++ + + GDGTA + +FTFS+H +N+P RK S LD+ + G
Sbjct: 132 GEAQADRVLIVDCDV--HQGDGTASLTAGRDDIFTFSIHAEKNFPVRKARSSLDIGLPDG 189
Query: 460 TDD 462
T D
Sbjct: 190 TGD 192
>gi|332140462|ref|YP_004426200.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
gi|327550484|gb|AEA97202.1| histone deacetylase family protein [Alteromonas macleodii str.
'Deep ecotype']
Length = 224
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 84/210 (40%), Gaps = 58/210 (27%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
KSS ++ + L + GDGTA + + D +FT S+H +N+P+RKQ SD ID+G
Sbjct: 69 KSSAIDNVLIVDLDVHQGDGTAKLAENDRDIFTLSIHGEKNFPYRKQQSD----IDIG-- 122
Query: 462 DAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND 521
L++ +E D E + L
Sbjct: 123 --------------LAKGTE---------------DDEYLQ--------------TLEQA 139
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISA 581
+ALA R I+ + DVH + L L G+Y RD V A
Sbjct: 140 LALAKRQFQPDAIIYDAGV---DVHVN------DDLGHLHISTEGVYERDKIVFALAEQL 190
Query: 582 GIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
G+P+A V GGGY DI L ++RAA
Sbjct: 191 GVPIAAVIGGGYQRDIAALVDVHIQLYRAA 220
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFCL ND+ LAA+ + + + VLIVDLDVHQ
Sbjct: 44 HHAFADFGSGFCLFNDLYLAAKTMQKSSAIDNVLIVDLDVHQ 85
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L QF+PD +IYDAGVD H +D+LG L+++ G
Sbjct: 132 YLQTLEQALALAKRQFQPDAIIYDAGVDVHVNDDLGHLHISTEG 175
>gi|85709385|ref|ZP_01040450.1| hypothetical protein NAP1_10908 [Erythrobacter sp. NAP1]
gi|85688095|gb|EAQ28099.1| hypothetical protein NAP1_10908 [Erythrobacter sp. NAP1]
Length = 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L +HLP ++ F PD V Y AGVDPH D+LG+L LTD G
Sbjct: 204 GYMEALDKHLPRVIDSFAPDFVFYQAGVDPHVEDKLGRLALTDEG 248
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+A L+ G +VLIVDLDVHQ
Sbjct: 115 GSHHALGDTGAGYCVFNDLAVATNRLLAQGDAARVLIVDLDVHQ 158
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
A ++ + L + GDGTA + VFT S+H +N+P RK S LD+ + GTDD G
Sbjct: 147 ARVLIVDLDVHQGDGTASLLAGREDVFTLSVHAEKNFPVRKARSTLDIGLPDGTDDDG 204
>gi|254471722|ref|ZP_05085123.1| histone deacetylase family protein [Pseudovibrio sp. JE062]
gi|211958924|gb|EEA94123.1| histone deacetylase family protein [Pseudovibrio sp. JE062]
Length = 279
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
M+ R LI I L + GDGTA IF D +VFT S+H +NYP RK+ S LDV ++ G
Sbjct: 125 MRMVRRVLI--IDLDVHQGDGTADIFAHDTSVFTLSLHSEKNYPVRKKASTLDVPLEDGM 182
Query: 461 DD 462
+D
Sbjct: 183 ED 184
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + L++ L +L FK DLV ++AGVDPH D LG+L L+D G
Sbjct: 187 YLSILEDTLKRVLTTFKADLVFFNAGVDPHHDDRLGRLALSDEG 230
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+A R + +VR+VLI+DLDVHQ
Sbjct: 97 GSHHARIAQGAGFCVFNDVAVAVRAVQAMRMVRRVLIIDLDVHQ 140
>gi|374330069|ref|YP_005080253.1| histone deacetylase superfamily protein [Pseudovibrio sp. FO-BEG1]
gi|359342857|gb|AEV36231.1| histone deacetylase superfamily [Pseudovibrio sp. FO-BEG1]
Length = 279
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
M+ R LI I L + GDGTA IF D +VFT S+H +NYP RK+ S LDV ++ G
Sbjct: 125 MRMVRRVLI--IDLDVHQGDGTADIFAHDTSVFTLSLHSEKNYPVRKKSSTLDVPLEDGM 182
Query: 461 DD 462
+D
Sbjct: 183 ED 184
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y + L++ L +L FK DLV ++AGVDPH D LG+L L+D G
Sbjct: 187 YLSILEDTLKRVLTTFKADLVFFNAGVDPHHDDRLGRLALSDEG 230
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+A R + +VR+VLI+DLDVHQ
Sbjct: 97 GSHHARIAQGAGFCVFNDVAVAVRAVQAMRMVRRVLIIDLDVHQ 140
>gi|383643074|ref|ZP_09955480.1| histone deacetylase superfamily protein [Sphingomonas elodea ATCC
31461]
Length = 313
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 476 LSQRSEKMRNNGIFLFLLRLSDPEI----NRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+++RSE++ G FL RL+ E + +HHA D GAG+C+ ND+A+AA L+
Sbjct: 85 VARRSERV-PGGTFL-AARLAQREGFAANSAGGSHHALADTGAGYCVFNDLAIAAVRLVE 142
Query: 532 HGIVRKVLIVDLDVHQ 547
G +VLIVD DVHQ
Sbjct: 143 EGHAARVLIVDCDVHQ 158
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
++ H A ++ + + GDGTA + P + T+S+H +N+P RK S LDV + GT
Sbjct: 141 VEEGHAARVLIVDCDVHQGDGTAALTAGRPEIATYSIHAEKNFPVRKARSTLDVGLPDGT 200
Query: 461 DDA 463
DA
Sbjct: 201 GDA 203
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL+ L +L F PDLV+Y AGVDP D LG+L L+ G
Sbjct: 205 YLETLEATLVPLLTGFDPDLVLYQAGVDPFAEDRLGRLGLSGEG 248
>gi|226355849|ref|YP_002785589.1| histone deacetylase superfamily protein [Deinococcus deserti
VCD115]
gi|226317839|gb|ACO45835.1| putative Histone deacetylase superfamily [Deinococcus deserti
VCD115]
Length = 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D GF +ND+ ++AR+L+ G R++L++DLDVHQ
Sbjct: 122 GTHHAFADRAEGFSFLNDVVISARWLLDAGYARRILVLDLDVHQ 165
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ + L + G+GTA + +P V T S+H NYPFRK+ S LDV + GT D
Sbjct: 156 ILVLDLDVHQGNGTASMLRAEPRVLTVSVHAQSNYPFRKERSGLDVGLPDGTGD 209
>gi|332307586|ref|YP_004435437.1| histone deacetylase [Glaciecola sp. 4H-3-7+YE-5]
gi|332174915|gb|AEE24169.1| Histone deacetylase [Glaciecola sp. 4H-3-7+YE-5]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCLMNDMA 523
R + W L QRS + L L + + HHAF + GAGFCL ND+
Sbjct: 96 RRIGFPWSEQLIQRSLTAVAGTVMTSTLALEQGKALNLTGGYHHAFANFGAGFCLFNDLY 155
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
LAA +++ + KVLI D DVHQ
Sbjct: 156 LAALNMLQASAINKVLIFDCDVHQ 179
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+ GDGTA + +P VFT S+H +N+P RKQ SDLD + G D TV
Sbjct: 178 HQGDGTAKLASNNPKVFTVSLHGEKNFPHRKQVSDLDFPLAKGATDDEYLTV 229
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 565 PGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
PG+Y RD V D G+P+A V GGGY DI L ++RAA
Sbjct: 268 PGVYARDCMVFDACSKQGVPLAAVIGGGYQRDISALVDVHLQLYRAA 314
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L+ V Q +P ++ S + V++ +Y
Sbjct: 24 VFHPIYSQLDLPFKHRFPIEKYQAIYDRLISLGV--PKAQFYQPDALTPSQLKRVYSPDY 81
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G K + GF WS L R T
Sbjct: 82 VNGLTQGVLEPKAMRRIGFPWSEQLIQRSLT 112
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++ L + F+PD VIYDAGVD H +D+LG L+++ G
Sbjct: 226 YLTVVERALHQAFSTFQPDAVIYDAGVDIHVNDDLGHLHISTPG 269
>gi|254293275|ref|YP_003059298.1| histone deacetylase [Hirschia baltica ATCC 49814]
gi|254041806|gb|ACT58601.1| Histone deacetylase [Hirschia baltica ATCC 49814]
Length = 300
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDG+A IF D VFTFSMHC N+P K SDLDV + G +D
Sbjct: 152 VLIVDLDVHHGDGSARIFANDQRVFTFSMHCEDNWPREKPPSDLDVGLAKGLEDEA-YLA 210
Query: 469 ALTW 472
AL W
Sbjct: 211 ALKW 214
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCL 518
D A + + W +S R+ + L L + +HHA D+GAGFC+
Sbjct: 73 DRAAQKKLGFEWSIDVSNRARASAAGSLLAGKLALKHGAAANTAGGSHHAGYDYGAGFCV 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+A ++ +V +VLIVDLDVH
Sbjct: 133 FNDVAVAVLNMLNAKLVERVLIVDLDVHH 161
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 110/283 (38%), Gaps = 58/283 (20%)
Query: 31 LPIIHTNKYECT-LPPNHRFPMSKFSKTFNYLVRDKVIDKS----KQLIEPQQISESIAE 85
LPI+H Y+ + + HRFPM K+S L+ K+++ P+ S
Sbjct: 2 LPIVHHPLYDASSVSDKHRFPMRKYS-----LLPLKLMEAGLAYPNSFHLPELASAEELS 56
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT----------------- 128
H+ +YV +G QK GFEWS +++R R +
Sbjct: 57 AAHSVQYVAAVLSGNLDRAAQKKLGFEWSIDVSNRARASAAGSLLAGKLALKHGAAANTA 116
Query: 129 ----HVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIH 184
H Y F VF D+A + ++ L L R + D+ D
Sbjct: 117 GGSHHAGYDYGAGFC----VFNDVAVAVLNM------LNAKLVERVLIVDLDVHHGD-GS 165
Query: 185 FMVGINTQPVSGYQATLKEHLPGILAQFKP--DLVIYDAGVDPHQHDE--LGKLNLTDHG 240
+ N Q V + +++ P + KP DL D G+ DE L L +
Sbjct: 166 ARIFANDQRVFTFSMHCEDNWP----REKPPSDL---DVGLAKGLEDEAYLAALKWSLCE 218
Query: 241 ECISSSARIS-SEAGVDPHQHDELGKLNLTDHGV----KYILN 278
SS +I AGVDPH D LG LNL+D G+ K++ N
Sbjct: 219 ALERSSPQIVFYNAGVDPHIEDRLGLLNLSDAGLQARDKWVAN 261
>gi|393725141|ref|ZP_10345068.1| histone deacetylase [Sphingomonas sp. PAMC 26605]
Length = 324
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA L+ G V +VLIVD DVHQ
Sbjct: 115 GSHHALADTGAGYCVFNDLAIAAVRLVEEGDVARVLIVDCDVHQ 158
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
A ++ + + GDGTA + P + T+S+H +N+P RK S LDV + GT D
Sbjct: 147 ARVLIVDCDVHQGDGTAALTAGHPGIATYSIHAEKNFPARKARSTLDVPLADGTGD 202
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 211 QFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+++P+L++Y AG+DP D LG+L L+D G
Sbjct: 219 EYRPELILYQAGIDPLAGDRLGRLALSDEG 248
>gi|386001263|ref|YP_005919562.1| Histone deacetylase family protein [Methanosaeta harundinacea 6Ac]
gi|357209319|gb|AET63939.1| Histone deacetylase family protein [Methanosaeta harundinacea 6Ac]
Length = 340
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 474 TFLSQRSEK---MRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
T +S+RS + M G+ + R++D N F+ HHA P+ G GFC+ N++A+
Sbjct: 81 TVVSRRSYEAALMAAGGVITGIERVNDGLENAFALVRPPGHHALPNRGMGFCIFNNVAIG 140
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
AR+ R G+ R VLIVD DVH
Sbjct: 141 ARFAQRMGMER-VLIVDWDVHH 161
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
SGY A +E L + +F PD+V+ AG DPHQ D L +NLT
Sbjct: 216 SGYFAAFEEILKPLALEFDPDIVLVSAGQDPHQADPLSGMNLT 258
>gi|357974943|ref|ZP_09138914.1| histone deacetylase superfamily protein [Sphingomonas sp. KC8]
Length = 304
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+ A LI G ++V+IVDLDVHQ
Sbjct: 115 GSHHALADTGAGYCVFNDLAITANRLIAQGDAKRVMIVDLDVHQ 158
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
L HL + F+PDL++Y AGVDPH D LG+L L+D G
Sbjct: 208 VLDAHLDPAIDGFQPDLILYQAGVDPHIEDRLGRLALSDAG 248
>gi|148556816|ref|YP_001264398.1| histone deacetylase superfamily protein [Sphingomonas wittichii
RW1]
gi|148502006|gb|ABQ70260.1| histone deacetylase superfamily [Sphingomonas wittichii RW1]
Length = 315
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L HLP + F PDL++Y AGVDPH+ D+LG+L L+D G
Sbjct: 205 YLAALAGHLPAAIDAFAPDLILYQAGVDPHREDKLGRLALSDEG 248
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI +++IVDLDVHQ
Sbjct: 115 GSHHAMADSGAGYCVFNDLAIAANRLIVERDAARIMIVDLDVHQ 158
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
A IM + L + GDGTA + P +FTFS+H RN+P RK S D+ + TDDA
Sbjct: 147 ARIMIVDLDVHQGDGTAVLTAGRPDIFTFSIHSERNFPARKARSSFDLGLPDDTDDA 203
>gi|410644684|ref|ZP_11355159.1| histone deacetylase family protein [Glaciecola agarilytica NO2]
gi|410135692|dbj|GAC03558.1| histone deacetylase family protein [Glaciecola agarilytica NO2]
Length = 300
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L QRS + L L + + HHAF + GAGFCL
Sbjct: 73 DPKAMRRIGFPWSEQLIQRSLTAVAGTVMTSNLALEQGKALNLTGGYHHAFANFGAGFCL 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+ LAA +++ + KVLI D DVHQ
Sbjct: 133 FNDLYLAALNMLQASAINKVLIFDCDVHQ 161
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+ GDGTA + +P VFT S+H +N+P RKQ SDLD + G D TV
Sbjct: 160 HQGDGTAKLASNNPKVFTVSLHGEKNFPHRKQVSDLDFPLAKGATDDEYLTV 211
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 565 PGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
PG+Y RD V D G+PVA V GGGY DI L ++RAA
Sbjct: 250 PGVYARDCMVFDACSKQGVPVAAVIGGGYQRDISALVDVHLQLYRAA 296
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L+ V Q +P ++ S + V++ +Y
Sbjct: 6 VFHPIYSQLDLPFKHRFPIEKYQAIYDRLISLGV--PKAQFYQPDALTPSQLKRVYSPDY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G K + GF WS L R T
Sbjct: 64 VNGLTQGVLDPKAMRRIGFPWSEQLIQRSLT 94
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++ L + F+PD VIYDAGVD H +D+LG L+++ G
Sbjct: 208 YLTVVERALHQAFSTFQPDAVIYDAGVDIHVNDDLGHLHISTPG 251
>gi|418062902|ref|ZP_12700642.1| histone deacetylase superfamily, partial [Methylobacterium
extorquens DSM 13060]
gi|373563553|gb|EHP89742.1| histone deacetylase superfamily, partial [Methylobacterium
extorquens DSM 13060]
Length = 183
Score = 57.0 bits (136), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LP ++ F PDL+ Y+AGVDPH+ D LG+L LTD G
Sbjct: 92 YFAVLEARLPALVQNFAPDLIFYNAGVDPHRDDRLGRLCLTDAG 135
Score = 56.6 bits (135), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RALI++ L + GDGTA ++P +FT S+HC RNYP K DLD+ + G DDA
Sbjct: 35 RALIVD--LDVHQGDGTADCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDA 90
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + LIVDLDVHQ
Sbjct: 3 SHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQ 45
Score = 44.7 bits (104), Expect = 0.14, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD YV+ A S IP+ V GGGY +D+D LA R ++ A
Sbjct: 135 GLLARDRYVVGLAQSQRIPLCAVIGGGYGSDVDALAARHALVFEA 179
>gi|300773816|ref|ZP_07083685.1| histone deacetylase [Sphingobacterium spiritivorum ATCC 33861]
gi|300759987|gb|EFK56814.1| histone deacetylase [Sphingobacterium spiritivorum ATCC 33861]
Length = 334
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTD 461
+ +H+ LI++ L + G+GTA IF AVFTFSMH +N+PF K+ S LD++++ G
Sbjct: 179 QKAHKILIID--LDVHQGNGTANIFKGSKAVFTFSMHGAKNFPFIKEQSHLDISLEDGIT 236
Query: 462 DAGNRTVALTWV 473
D N LT V
Sbjct: 237 DK-NYLSQLTTV 247
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLS 561
THHA +G GFCL+ND A+AA YL+ K+LI+DLDVHQ T +I S V +
Sbjct: 150 GTHHAGYAYGEGFCLLNDQAIAAAYLLAEQKAHKILIIDLDVHQGNGTANIFKGSKAVFT 209
Query: 562 SCVPGL----YMRDYYVLDTAISAGI 583
+ G ++++ LD ++ GI
Sbjct: 210 FSMHGAKNFPFIKEQSHLDISLEDGI 235
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 22 KSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISE 81
+ Q++ V L I N Y L HRFPM K+ L+ + ++ K EP+ +SE
Sbjct: 26 RHQIENFVLLKIAFHNAYIHPLREGHRFPMLKYELIPMQLIHEGLVSKD-SFFEPELVSE 84
Query: 82 SIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
IA L H + YV F + + GF + L R R
Sbjct: 85 EIACLAHDESYVRDLFELTLDARMIRRIGFPLTDSLIRRER 125
>gi|298710180|emb|CBJ26255.1| histone deacetylase family protein, plastidal [Ectocarpus
siliculosus]
Length = 362
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GL RDYYV+ T + G+PVA V GGGY +D D LA+R + + +AA ++E
Sbjct: 303 GLLARDYYVISTCLEMGLPVACVVGGGYDSDRDVLARRHSTVFKAAFQAWRE 354
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 199 ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ L+ LP AQ+ PDLV+YDAGVD H D LGK+ ++D G
Sbjct: 262 SALRRVLPHEFAQYPPDLVLYDAGVDMHAGDRLGKMLISDEG 303
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA G+G+ ++ND+A+A+R + G KV IVD DVHQ
Sbjct: 170 GTHHAHKGFGSGYTILNDLAVASRVVQADGTASKVTIVDCDVHQ 213
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA IF D +V T S HC N+P K SD+DV G D
Sbjct: 212 HQGDGTATIFADDASVRTLSFHCQDNFPAVKPASDIDVGFPPGAGD 257
>gi|121604519|ref|YP_981848.1| histone deacetylase superfamily protein [Polaromonas
naphthalenivorans CJ2]
gi|120593488|gb|ABM36927.1| histone deacetylase superfamily [Polaromonas naphthalenivorans CJ2]
Length = 333
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I L + G+GTA IF D +VFT S+H +N+PFRK+ SDLDV + G DA
Sbjct: 181 IDLDVHQGNGTASIFAGDASVFTLSLHGEKNFPFRKEASDLDVELPDGCLDA 232
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 34 IHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKE 91
+ + + LP HRFPM K+ L+R++++ + + ++++ S+ LVH
Sbjct: 19 FYADNFVLPLPTGHRFPMRKYK-----LLRERLVSELPAVRMMQAPAASDGELALVHAPA 73
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
Y+ +G Q+ GF WS G+A R R
Sbjct: 74 YIQAITHGTLPAPAQREIGFPWSEGMAERAR 104
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 504 STHHAFPDHGAGFCLMNDMALAAR-----YLIRHGIVR---KVLIVDLDVHQ 547
THHA+ G GFC+ ND A+AAR + +H R +V ++DLDVHQ
Sbjct: 136 GTHHAYAHKGGGFCVFNDAAVAARLMQAEWARQHRQARQPLQVAVIDLDVHQ 187
>gi|404396176|ref|ZP_10987971.1| hypothetical protein HMPREF0989_05014 [Ralstonia sp. 5_2_56FAA]
gi|404278975|gb|EJZ44406.1| hypothetical protein HMPREF0989_05014 [Ralstonia sp. 5_2_56FAA]
Length = 335
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 123/322 (38%), Gaps = 48/322 (14%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV 87
++H+ +T+ + LPP HRFPM K+S ++ D V S Q E + + L
Sbjct: 13 VIHMRAFYTDHFVLPLPPGHRFPMRKYSDLRARVLAD-VPGLSMQ--EAPRADDDALLLA 69
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAVYLPFF 138
HT EYV G+ Q+ GF WS + R R D IAV L
Sbjct: 70 HTFEYVEAVSAGRLDPARQREIGFPWSPEMVERSRRSAGATMAACDAALADGIAVNLAGG 129
Query: 139 LQRRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVS 195
+ D V D + ++ R P F +A V D+ G T +
Sbjct: 130 THH--AYADKGGGFCVFNDAAIASRWIQRQSGRTPGDFPVAIVDLDVHQ---GNGTASIL 184
Query: 196 GYQATL-------KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR 248
AT+ +++ P F+ + D G+ DE LT + ++ +
Sbjct: 185 RDDATVFTLSLHGEKNYP-----FRKEASDLDVGLHDGCGDEDYLQALTGALDILAGRFK 239
Query: 249 ---ISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRR-PVFF 304
I AG DPH+ D LG+L LT G L R V F QRR PV
Sbjct: 240 PQLIIYLAGADPHEGDRLGRLKLTLQG----LARRDQEV--------FDFAYQRRIPVAV 287
Query: 305 DIAAVLADLIHFMVGINTQPVS 326
+A + I V ++ Q ++
Sbjct: 288 TMAGGYGNNIDDTVAVHAQTIA 309
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA I D VFT S+H +NYPFRK+ SDLDV + G D
Sbjct: 170 VDLDVHQGNGTASILRDDATVFTLSLHGEKNYPFRKEASDLDVGLHDGCGD 220
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + L+D +N THHA+ D G GFC+
Sbjct: 84 DPARQREIGFPWSPEMVERSRRSAGATMAACDAALADGIAVNLAGGTHHAYADKGGGFCV 143
Query: 519 MNDMALAARYLIRHGIVR----KVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPG 566
ND A+A+R++ R V IVDLDVHQ T SI TV + + G
Sbjct: 144 FNDAAIASRWIQRQSGRTPGDFPVAIVDLDVHQGNGTASILRDDATVFTLSLHG 197
>gi|88602015|ref|YP_502193.1| histone deacetylase superfamily protein [Methanospirillum hungatei
JF-1]
gi|88187477|gb|ABD40474.1| histone deacetylase superfamily [Methanospirillum hungatei JF-1]
Length = 322
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----P 555
+NR HH + D G GFC +N+ A+ ARYL HG+ K++I+D D H + + P
Sbjct: 103 LNRPPGHHTYADRGGGFCYLNNAAILARYLQMHGM-EKIMIIDWDAHHGNGTESIFYDDP 161
Query: 556 SLTVLSSCVPGLYMRDYYVLDTAISAG------IPVATVTG 590
S+ S LY + DT + G IPV TG
Sbjct: 162 SVLYTSIHQSPLYPGTGEIQDTGVGQGEGYTINIPVPPGTG 202
>gi|392535978|ref|ZP_10283115.1| histone deacetylase [Pseudoalteromonas arctica A 37-1-2]
Length = 276
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 87/236 (36%), Gaps = 54/236 (22%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
MSKF+ + ++ + +I L+EP + EL+H + Y+H +N + EK + G
Sbjct: 1 MSKFAHLYQHVAKLGLI--GDNLVEPILGTPEPLELIHCENYIHDLWNNRLDEKAMRRIG 58
Query: 111 FEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQRRPVFFDIAAVLADLICIAVY 161
WS L +R T P T H IA +L F C+
Sbjct: 59 LPWSKELMARTFTAPQGTLQTARLALKHGIACHLAGGTHHAHTDFGSG------YCMVND 112
Query: 162 LTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQ----------------------- 198
L F Q ++ VL + G T + +Q
Sbjct: 113 LAFTTQTLIESGEVTNVLIFDLDVHQGDGTAAMLQHQAYAYTCSIHCEKNFPFRKSASDL 172
Query: 199 --------------ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
A + + L +L + P LV+YDAGVD Q D LGKL+++ G
Sbjct: 173 DIGLADNMKDDEYLAVVDDTLSYLLKELNPSLVLYDAGVDIWQGDGLGKLDISWDG 228
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+A + LI G V VLI DLDVHQ
Sbjct: 95 GTHHAHTDFGSGYCMVNDLAFTTQTLIESGEVTNVLIFDLDVHQ 138
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 60/195 (30%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DVGTDDAGNRTVALTW 472
L + GDGTA + +T S+HC +N+PFRK SDLD+ + D DD
Sbjct: 134 LDVHQGDGTAAMLQHQAYAYTCSIHCEKNFPFRKSASDLDIGLADNMKDD---------- 183
Query: 473 VTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRH 532
+L+ + + +LL+ +P + + AG + L +
Sbjct: 184 -EYLAVVDDTLS------YLLKELNPSLVLYD---------AGVDIWQGDGLGKLDISWD 227
Query: 533 GIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGG 592
GIV++ D+ VL + PVATV GGG
Sbjct: 228 GIVKR---------------------------------DHLVLKRCLEHNTPVATVIGGG 254
Query: 593 YCADIDQLAQRQTII 607
Y D +LA+R I+
Sbjct: 255 YDKDHLRLAKRHAIV 269
>gi|351732315|ref|ZP_08950006.1| histone deacetylase [Acidovorax radicis N35]
Length = 314
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA IF D +VFT S+H RN+PFRK+ SDLDV + G D
Sbjct: 161 IDLDVHQGNGTAHIFRGDHSVFTLSLHGARNFPFRKEPSDLDVELPDGCSD 211
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + W +++R+ + + + L + + THHA+ D G+GFC+ ND+
Sbjct: 73 QREIGFPWSEAMAERARRSVGATVAASRVALREGVAGNLAGGTHHAYADKGSGFCVFNDV 132
Query: 523 ALAARYLI----------RHGIVRKVLIVDLDVHQ 547
A+AAR + R +V ++DLDVHQ
Sbjct: 133 AVAARLMQVEWARGGGDGRAARPLQVAVIDLDVHQ 167
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK----SKQLIEPQQISESIAELVHTK 90
+ + + LP HRFPM+K+ L+RD++ S Q+ P S+ L H
Sbjct: 5 YADHFVLPLPEGHRFPMAKYR-----LLRDRIAQHLPGVSLQVALP--ASDRELALAHAP 57
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+Y+ +G Q+ GF WS +A R R
Sbjct: 58 DYIDAIADGTLPPLAQREIGFPWSEAMAERAR 89
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ L + +F P LV Y AG DPH+ D LG+L +T G
Sbjct: 214 YLQALEHALDALEQRFAPQLVFYLAGADPHEGDRLGRLAVTHDG 257
>gi|302839673|ref|XP_002951393.1| hypothetical protein VOLCADRAFT_91828 [Volvox carteri f.
nagariensis]
gi|300263368|gb|EFJ47569.1| hypothetical protein VOLCADRAFT_91828 [Volvox carteri f.
nagariensis]
Length = 505
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVH 94
+ + + LPP HRFPM K++ T L D ++ QL +S L H YV
Sbjct: 145 YADHWRVPLPPGHRFPMEKYAATHGSLKADHSLEGLIQLRAAPAVSMEDVTLAHDVAYVE 204
Query: 95 KFFNGKTTEKEQKVTGFEWSAGLASRV 121
+F + T+ E + GF WS L R
Sbjct: 205 RFRYNRMTDPEMRNVGFPWSEQLVGRT 231
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFR-KQCSDLDVAIDVGTDDAGNRT 467
I+ + L + G+GTA IF DP V TF + +NYP++ ++ + D+ + DD G+
Sbjct: 282 ILVVDLDVHQGNGTADIFQDDPRVTTFDIFGDKNYPWKTRRKNTYDIPL---LDDTGDEQ 338
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
++L + L+R P++ F AG AL
Sbjct: 339 YVALLRSWLPK-------------LMREHRPQLIMFQ---------AGV-----DALRGD 371
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
R G+ R L+ R+ V TA+ AG+P+
Sbjct: 372 SFGRLGMTRSGLLA----------------------------RNNLVYGTALEAGVPLVI 403
Query: 588 VTGGGYCADID 598
GGGY +D
Sbjct: 404 TMGGGYTRPMD 414
>gi|444426852|ref|ZP_21222255.1| hypothetical protein B878_12940 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444239867|gb|ELU51421.1| hypothetical protein B878_12940 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 307
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 78/218 (35%), Gaps = 58/218 (26%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ H +M I + GDGTA + + + T S HC +N+P RK SDLDV T
Sbjct: 148 LDHEHVDKVMIIDSDVHHGDGTATLCKDEGDIITLSFHCDKNFPARKPDSDLDVPFRRDT 207
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMN 520
DD TFL E + + L P++
Sbjct: 208 DDE----------TFLMTFKE------VVQMAINLHRPDM-------------------- 231
Query: 521 DMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
+I D V HT L + G++ RD +++
Sbjct: 232 ------------------VIYDAGVDIHTDD----ELGYFNVSTEGIFERDRFLMQLMKD 269
Query: 581 AGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
GIPVA V GGGY ++ L + AA VYK R
Sbjct: 270 RGIPVAAVVGGGYRSEHADLVPIHMQLIDAAERVYKHR 307
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +GI + L HHA D G+GFCL ND+A+
Sbjct: 94 TRTLTSTAGTVLT--AEKALEHGIAIHL---------SGGYHHAHKDFGSGFCLFNDLAI 142
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA++++ H V KV+I+D DVH
Sbjct: 143 AAKHMLDHEHVDKVMIIDSDVHH 165
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 98/259 (37%), Gaps = 54/259 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK----QLIEPQQISESIAE 85
LP+I+ Y + LP HR+P+ K+ + V +K+ + + +P +S +
Sbjct: 2 LPLIYHPIYSQLDLPEGHRYPIMKYHH-LHQAVLEKLGSEDWGGKIEFFQPTPLSTDEIK 60
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH++EYV G + + GF WS L +R T T H IA++L
Sbjct: 61 RVHSEEYVDLLVTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGIAIHLS 120
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT----- 191
F L + + IA L V D ++ +H G T
Sbjct: 121 GGYHHAHKDFGSGFCLFNDLAIAA--KHMLDHEHV--DKVMIIDSDVHHGDGTATLCKDE 176
Query: 192 -----------------QPVSG-------------YQATLKEHLPGILAQFKPDLVIYDA 221
+P S + T KE + + +PD+VIYDA
Sbjct: 177 GDIITLSFHCDKNFPARKPDSDLDVPFRRDTDDETFLMTFKEVVQMAINLHRPDMVIYDA 236
Query: 222 GVDPHQHDELGKLNLTDHG 240
GVD H DELG N++ G
Sbjct: 237 GVDIHTDDELGYFNVSTEG 255
>gi|407939445|ref|YP_006855086.1| histone deacetylase [Acidovorax sp. KKS102]
gi|407897239|gb|AFU46448.1| histone deacetylase [Acidovorax sp. KKS102]
Length = 310
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA IF D +VFT S+H RN+PFRK+ SDLDV + G D
Sbjct: 157 IDLDVHQGNGTAHIFQGDDSVFTLSLHGARNFPFRKEPSDLDVELPDGCAD 207
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+ + + LP HRFPM+K+ ++RD++ + L E S+ VH+ +Y
Sbjct: 5 YADHFVLPLPEGHRFPMAKYR-----MLRDRIAEHLPGAVLKEALPASDEALARVHSPQY 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
++ +G Q+ GF WS +A R R
Sbjct: 60 INAVDHGTLAPAAQREIGFPWSPAMAERAR 89
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Query: 455 AIDVGT-DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS----THHAF 509
A+D GT A R + W +++R+ R+ G L R + E + THH++
Sbjct: 62 AVDHGTLAPAAQREIGFPWSPAMAERAR--RSVGATLAATRAAWREGVAGNLAGGTHHSY 119
Query: 510 PDHGAGFCLMNDMALAARYLIR------HGIVRKVLIVDLDVHQ 547
D G+GFC+ ND+A+AAR G +V ++DLDVHQ
Sbjct: 120 ADKGSGFCVFNDVAVAARQAQADHLNDGSGWPLQVAVIDLDVHQ 163
>gi|410625716|ref|ZP_11336491.1| histone deacetylase 11 [Glaciecola mesophila KMM 241]
gi|410154792|dbj|GAC23260.1| histone deacetylase 11 [Glaciecola mesophila KMM 241]
Length = 318
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L QRS + L L + + HHAF + G+GFCL
Sbjct: 91 DPKAMRRIGFPWSEQLIQRSLTAVAGTVMTSSLALEHGKALNLTGGYHHAFANFGSGFCL 150
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+ LAA +++ +RKVLI D DVHQ
Sbjct: 151 FNDLYLAALNMLQTPTIRKVLIFDCDVHQ 179
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 560 LSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
L PG+Y RD V + G+PVA V GGGY DID L ++RAA
Sbjct: 263 LHISTPGVYARDCMVFEACEKYGVPVAAVIGGGYQRDIDALVDVHLQLYRAA 314
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+ GDGTA + + VFT S+H +N+P RKQ SDLD + G D TV
Sbjct: 178 HQGDGTAKLASNNKRVFTVSIHGEKNFPHRKQVSDLDFPLAKGATDDEYLTV 229
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L+ V Q +P ++ S + V++ +Y
Sbjct: 24 VFHPIYSQLDLPFKHRFPIEKYQAIYDKLISLGV--PKAQFHQPDALTPSHLKRVYSPDY 81
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G K + GF WS L R T
Sbjct: 82 VNGLTQGVLDPKAMRRIGFPWSEQLIQRSLT 112
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++ L + + F+PD VIYDAGVD H +D+LG L+++ G
Sbjct: 226 YLTVVEGALHQVFSTFQPDAVIYDAGVDIHINDDLGHLHISTPG 269
>gi|323450842|gb|EGB06721.1| hypothetical protein AURANDRAFT_28875 [Aureococcus anophagefferens]
Length = 339
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIR-HG-IVRKVLIVDLDVHQHTRSIPV----PSL 557
THHAF D G GFC+ +D+A+AA L+R +G +V K+L+VD+DVHQ + + P++
Sbjct: 141 GTHHAFFDRGEGFCVFSDIAVAANVLLRDYGDVVEKILVVDVDVHQGNGNAKLFEGAPAV 200
Query: 558 TVLSSCVPGLYMRDYYVLDTAISAGIPVATVTG 590
T S G Y + D + +P G
Sbjct: 201 TTFSMHCDGNYFSEKRASDVDVE--VPAGAGDG 231
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 73/209 (34%), Gaps = 59/209 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + + + G+G A +F+ PAV TFSMHC NY K+ SD+DV + G D
Sbjct: 177 ILVVDVDVHQGNGNAKLFEGAPAVTTFSMHCDGNYFSEKRASDVDVEVPAGAGDG----- 231
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L + + G + L+
Sbjct: 232 --EYLRLLKSYVQMLAGGGADVVFLQ---------------------------------- 255
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D +H R L L GL R+ +LD + G V
Sbjct: 256 ------------AGVDPSEHDR------LGKLRLTADGLRRRNKLLLDAFLRKGASVVVT 297
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVYKE 617
GGGY ++D + I A VY+E
Sbjct: 298 MGGGYPKNLDPASPEYRAIVEAHADVYRE 326
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 28 LVHLPIIHTNK-YECTLPPNHRFPMSKFSKTFNYLVRDKV-IDKSKQLIEPQQISESIAE 85
L P+ + N +E LP NHRFPM+K+ LVR+ + + EP ++ S+ +
Sbjct: 17 LATRPVFYYNDVWEFPLPENHRFPMAKYR-----LVREALQAEGVAAAFEPSPLA-SLTD 70
Query: 86 LV--HTKEYVHKFFNGKTTEKEQKVTGFEWS 114
L H + Y +F GK T E + GF WS
Sbjct: 71 LTTTHCRGYCERFVGGKLTAAENRNIGFPWS 101
>gi|304320465|ref|YP_003854108.1| histone deacetylase/AcuC/AphA family protein [Parvularcula
bermudensis HTCC2503]
gi|303299367|gb|ADM08966.1| putative histone deacetylase/AcuC/AphA family protein [Parvularcula
bermudensis HTCC2503]
Length = 299
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSC 563
THHA + G+G+C+ ND A+ AR L+ G+V ++ IVDLDVHQ + + +
Sbjct: 116 GTHHAHAEAGSGYCIYNDFAVVARTLLNEGVVDRIAIVDLDVHQGDGN------AAMLTD 169
Query: 564 VPGLYMRDYY 573
PG+Y+ D +
Sbjct: 170 HPGVYILDVF 179
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ A ++ HLP + A F+PDL++Y AGVDP D+LG+L+++ G
Sbjct: 204 GAFLAAIEAHLPQVWA-FEPDLLLYQAGVDPLASDKLGRLDISFAG 248
>gi|440712560|ref|ZP_20893176.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SWK14]
gi|436442715|gb|ELP35826.1| histone deacetylase/AcuC/AphA family protein [Rhodopirellula
baltica SWK14]
Length = 285
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLS-DPEINR---FSTHHAFPDHGAGFCLMND 521
R + W + +RS R+ G + R + D I+ THHAF G G+C+ ND
Sbjct: 56 RRIGFPWSAKMVERSR--RSTGATISAARAALDEGISANLAGGTHHAFAGEGEGYCVFND 113
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R L G++++ I+DLDVHQ
Sbjct: 114 AAVAIRTLQSEGLIQRAAIIDLDVHQ 139
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
RA I++ L + G+GTA I P+VFT S+H +N+P RK SDLDV++ GT D
Sbjct: 128 QRAAIID--LDVHQGNGTASILKDVPSVFTCSVHGVKNFPLRKMPSDLDVSLPDGTGD 183
>gi|375266235|ref|YP_005023678.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. EJY3]
gi|369841555|gb|AEX22699.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. EJY3]
Length = 305
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I + GDGTA + ++P + T S HC +N+P RK SDLDV + GTDD
Sbjct: 156 VLVIDSDVHHGDGTATLCQEEPDIVTLSFHCDKNFPARKPESDLDVPLVRGTDDE----- 210
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
TFL E + L L P++
Sbjct: 211 -----TFLMTFKE------VVQMALNLHRPDM---------------------------- 231
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+I D V HT L G+ RD +++ GIPVA V
Sbjct: 232 ----------VIYDAGVDIHTDD----ELGYFDVSTQGILERDRFLMQLMKERGIPVAAV 277
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY ++ + L + +A+ V+
Sbjct: 278 VGGGYRSNHEDLVPIHMNLIQASLEVF 304
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ +AA++++ H V KVL++D DVH
Sbjct: 124 HHAHRDFGSGFCLFNDLVIAAKHMLDHDDVDKVLVIDSDVHH 165
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
LP+I+ Y + LP HR+P+ K+ + V++K+ +++ Q EP +S + +
Sbjct: 2 LPLIYHPIYSKLALPEGHRYPIMKYQYLYE-AVQEKLENENSQSRVQFFEPTALSVADIK 60
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
VH EYV +G + + GF WS L +R T T + A
Sbjct: 61 RVHEAEYVDLLVSGSMPAAKMRRIGFPWSEALITRTLTSAAGTVLTA 107
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
T KE + L +PD+VIYDAGVD H DELG +++ G
Sbjct: 215 TFKEVVQMALNLHRPDMVIYDAGVDIHTDDELGYFDVSTQG 255
>gi|197337404|ref|YP_002157959.1| deacetylase [Vibrio fischeri MJ11]
gi|197314656|gb|ACH64105.1| deacetylase [Vibrio fischeri MJ11]
Length = 298
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 71/192 (36%), Gaps = 58/192 (30%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + T S HC +N+P RK SD DV + VGT D
Sbjct: 162 GDGTATLCADRGDIITLSFHCDKNFPARKPISDYDVPLSVGTQD---------------- 205
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
N + F +I + +H PD +
Sbjct: 206 ------NEFLEAF------EQIVEMAINHHQPD--------------------------L 227
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+I D V H L LS GLY RD ++ A GIP+A V GGGY ++ +
Sbjct: 228 IIYDAGVDIHIDD----ELGYLSVSTEGLYQRDRFMKSIATQKGIPIACVAGGGYRSNHE 283
Query: 599 QLAQRQTIIHRA 610
L + + RA
Sbjct: 284 DLVEPHLQLIRA 295
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 49/252 (19%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
I H + LP HR+P+ K+ + + ++ D+ EP +S + VH + Y
Sbjct: 5 IYHPIYSQLALPDGHRYPIQKYQRLYQ-AIQSHYSDELYCCFEPIPLSIEAIKQVHEENY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQRRP 143
V+ G + + GF WS L R + D + A++L
Sbjct: 64 VNALVTGTLPAAKMRRIGFPWSESLIERTLLSASGTCLTVDKALENGSAIHLSGGYHHAH 123
Query: 144 VFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------------ 191
F L + + IA + L + + D ++ +H G T
Sbjct: 124 YDFGSGFCLVNDLAIAAH--HGLSKDSI--DKVLIIDSDVHHGDGTATLCADRGDIITLS 179
Query: 192 ----------QPVSGYQATL------KEHLPGI-------LAQFKPDLVIYDAGVDPHQH 228
+P+S Y L E L + +PDL+IYDAGVD H
Sbjct: 180 FHCDKNFPARKPISDYDVPLSVGTQDNEFLEAFEQIVEMAINHHQPDLIIYDAGVDIHID 239
Query: 229 DELGKLNLTDHG 240
DELG L+++ G
Sbjct: 240 DELGYLSVSTEG 251
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+A+AA + + + KVLI+D DVH
Sbjct: 120 HHAHYDFGSGFCLVNDLAIAAHHGLSKDSIDKVLIIDSDVHH 161
>gi|350531992|ref|ZP_08910933.1| hypothetical protein VrotD_12733 [Vibrio rotiferianus DAT722]
Length = 317
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 77/220 (35%), Gaps = 58/220 (26%)
Query: 396 GCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
T + H +M I + GDGTA + + +P + T S HC +N+P RK SDLDV
Sbjct: 143 AATHMLDHDHIDKVMIIDSDVHHGDGTATLCEDEPDIITLSFHCDKNFPARKPESDLDVP 202
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAG 515
+ T D TFL E + + L P++
Sbjct: 203 LSRDTSDE----------TFLMTFKE------VVEMAINLHRPDM--------------- 231
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVL 575
+I D V HT L G++ RD +++
Sbjct: 232 -----------------------VIYDAGVDIHTDD----ELGYFDVSTEGIFERDRFLM 264
Query: 576 DTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
GIPVA V GGGY +D L + A VY
Sbjct: 265 QLMKDKGIPVAAVVGGGYRSDHADLVPIHMQLIEAVAQVY 304
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 96/258 (37%), Gaps = 52/258 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIE---PQQISESIAEL 86
LP+I+ Y + L HR+P+ K+ + +V I + IE P +S +
Sbjct: 2 LPLIYHPIYSQLELAEGHRYPIMKYHYLYQAVVEKLAIKGWGEQIEFFQPNPLSVDDIKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF 137
VH+ EYV G + + GF WS L +R T T H +A++L
Sbjct: 62 VHSGEYVDLLVTGSMPAVKMRRIGFPWSEALIARTLTSTAGTVLTAEMALEHGVAIHLSG 121
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------ 191
F L + + IA T L + D ++ +H G T
Sbjct: 122 GYHHAHKDFGSGFCLFNDLAIAA--THMLDHDHI--DKVMIIDSDVHHGDGTATLCEDEP 177
Query: 192 ----------------QPVSG-------------YQATLKEHLPGILAQFKPDLVIYDAG 222
+P S + T KE + + +PD+VIYDAG
Sbjct: 178 DIITLSFHCDKNFPARKPESDLDVPLSRDTSDETFLMTFKEVVEMAINLHRPDMVIYDAG 237
Query: 223 VDPHQHDELGKLNLTDHG 240
VD H DELG +++ G
Sbjct: 238 VDIHTDDELGYFDVSTEG 255
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA +++ H + KV+I+D DVH
Sbjct: 124 HHAHKDFGSGFCLFNDLAIAATHMLDHDHIDKVMIIDSDVHH 165
>gi|410614773|ref|ZP_11325811.1| histone deacetylase family protein [Glaciecola psychrophila 170]
gi|410165622|dbj|GAC39700.1| histone deacetylase family protein [Glaciecola psychrophila 170]
Length = 298
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHG 513
+D D R + W L QR+ + L L + + HHAF ++G
Sbjct: 67 VDGTLDGKAMRRIGFPWSAQLIQRTLTAVGGTVLTARLALEHGKALNLTGGYHHAFANYG 126
Query: 514 AGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+GFCL ND+ LAA +++ + KVLI D DVHQ
Sbjct: 127 SGFCLFNDLYLAALSMLKSPNIDKVLIFDCDVHQ 160
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 58/213 (27%)
Query: 399 SGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDV 458
S +KS + ++ + GDGTA + + + ++T S+H +N+P+RKQ S++D +
Sbjct: 141 SMLKSPNIDKVLIFDCDVHQGDGTAKLAENNTQIYTVSLHAEKNFPYRKQHSNMDFNLLK 200
Query: 459 GTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCL 518
GT Q SE + L L IN + D G +
Sbjct: 201 GT-----------------QDSEYLDTVDSALHL------AINTYQPDAVIYDAGVDIHI 237
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTA 578
+D+ H H + G+Y RD V DT
Sbjct: 238 DDDLG----------------------HLHITT-------------EGVYQRDCLVFDTC 262
Query: 579 ISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
G+P+A V GGGY +I L +++AA
Sbjct: 263 KHKGLPIAAVIGGGYQRNIKALVDVHLQLYKAA 295
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ + L V + + + P IS V +Y
Sbjct: 5 VFHPIYSQLDLPVRHRFPVEKYQGIRDGLAAMGVANDNFHI--PTPISPKDLRQVFNPQY 62
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V + +G K + GF WSA L R T
Sbjct: 63 VQQLVDGTLDGKAMRRIGFPWSAQLIQRTLT 93
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
S Y T+ L + ++PD VIYDAGVD H D+LG L++T G
Sbjct: 205 SEYLDTVDSALHLAINTYQPDAVIYDAGVDIHIDDDLGHLHITTEG 250
>gi|330814278|ref|YP_004358517.1| histone deacetylase [Candidatus Pelagibacter sp. IMCC9063]
gi|327487373|gb|AEA81778.1| histone deacetylase family protein [Candidatus Pelagibacter sp.
IMCC9063]
Length = 260
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHAF D G G+C+ ND+A+AA L+ V+K+LI DLDVHQ
Sbjct: 75 GSHHAFSDSGNGYCVFNDVAVAAYNLLNKHSVKKILIYDLDVHQ 118
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 63/203 (31%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCS--DLDVAIDVGTDDAGNR 466
I+ L + GDGTA IF+ + V+TFS H +NYP KQ S DL++A D+ TD+
Sbjct: 109 ILIYDLDVHQGDGTAKIFENNDQVYTFSAHSKKNYPLVKQQSNQDLELADDI-TDEEYLN 167
Query: 467 TVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAA 526
TV+ +S ++ N F F+
Sbjct: 168 TVS---------KSLELVNKMNFDFVF--------------------------------- 185
Query: 527 RYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVA 586
+ +D+H+ + L L+ G+ R+ V++ IP+
Sbjct: 186 ------------YVAGVDIHKDDK------LGKLNITTEGIEKREKMVINNFYKNKIPLC 227
Query: 587 TVTGGGYCADIDQLAQRQTIIHR 609
V GGGY D + L +I+HR
Sbjct: 228 GVLGGGYNKDFNHLVYLHSILHR 250
>gi|396582606|gb|AFN88470.1| histone deacetylase [Aeromonas hydrophila]
Length = 319
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 458 VGTDDAGN-RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST----HHAFPDH 512
GT DAG R + W L +R+ +R+ G L R + + HHA D
Sbjct: 87 AGTLDAGAIRQLGFPWSPLLIERT--LRSVGATLAASRHALEQGCGLQISGGYHHAHRDV 144
Query: 513 GAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
G+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 145 GSGFCLFNDLVIAAQMCLDEGRCEQVLIVDLDVHQ 179
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL E L L + PDL++Y AGVD H+ DELG L L+D G
Sbjct: 226 YLTTLAEALNLALRLYTPDLILYQAGVDVHKDDELGYLALSDEG 269
>gi|290979601|ref|XP_002672522.1| histone deacetylase [Naegleria gruberi]
gi|284086099|gb|EFC39778.1| histone deacetylase [Naegleria gruberi]
Length = 416
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIV---RKVLIVDLDVHQ 547
HH+F D G+G+C+ ND+ +A +YLI G + RK L++DLDVHQ
Sbjct: 173 HHSFYDRGSGYCIWNDIVIAGQYLINSGAIGEGRKYLVIDLDVHQ 217
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 412 IGLPCYDGDGTAFI--FDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + GDGT+ + FTFSMHC N+P K+ SD DV ++ D
Sbjct: 211 IDLDVHQGDGTSNLCRLLHSGKSFTFSMHCKHNFPIHKEKSDWDVELEDNMKD 263
>gi|393765147|ref|ZP_10353737.1| histone deacetylase superfamily protein [Methylobacterium sp. GXF4]
gi|392729439|gb|EIZ86714.1| histone deacetylase superfamily protein [Methylobacterium sp. GXF4]
Length = 306
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC++ND+A+AAR L G VR+VL+VD DVHQ
Sbjct: 117 GSHHARRLQGAGFCVLNDVAVAARTLQAEGAVRRVLVVDCDVHQ 160
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY L+ LP +L PDL+ Y+AGVDPH+ D LG+L L+D G
Sbjct: 205 AGYLEVLRARLPPLLDALVPDLIFYNAGVDPHRDDRLGRLCLSDDG 250
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+ GDGTA P +FT S+HC NYP +K DLD+ + DDAG
Sbjct: 159 HQGDGTADCLALWPDLFTLSIHCENNYPAQKIAGDLDIGLPDRLDDAG 206
>gi|325282956|ref|YP_004255497.1| Histone deacetylase [Deinococcus proteolyticus MRP]
gi|324314765|gb|ADY25880.1| Histone deacetylase [Deinococcus proteolyticus MRP]
Length = 307
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
L + GDGTA + + +P FT S+H RNYPFRK+ S LD+ + G DA TV T
Sbjct: 163 LDVHQGDGTAALLEHEPRAFTLSIHGERNYPFRKERSSLDLGLGDGVTDAEYLTVLRT 220
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D GFCL+ND A+ R + G ++V ++DLDVHQ
Sbjct: 124 GTHHAFADRAGGFCLVNDAAILTRLALDEGWAQRVAVLDLDVHQ 167
>gi|269962118|ref|ZP_06176472.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833202|gb|EEZ87307.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 306
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 94/258 (36%), Gaps = 52/258 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIE---PQQISESIAEL 86
LP+I+ Y + LP HR+P+ K+ + ++ + IE P +S +
Sbjct: 2 LPLIYHPIYSQLDLPDGHRYPIMKYRYLYQAVMEKLASEDWGGQIECFQPSPLSTDDIKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF 137
VH EYV G + + GF WS L +R T T H +A++L
Sbjct: 62 VHDGEYVDLLVTGAMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGVAIHLSG 121
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------ 191
F L + + IA L V D ++ +H G T
Sbjct: 122 GYHHAHKNFGSGFCLFNDLAIAA--KHMLDNEHV--DKVMIIDSDVHHGDGTATICESEP 177
Query: 192 ----------------QPVSG-------------YQATLKEHLPGILAQFKPDLVIYDAG 222
+P S Y T KE + + +PD+VIYDAG
Sbjct: 178 DIVTLSFHCDKNFPARKPDSDLDVPLSRDTNDETYLMTFKEVVEMAINLHRPDIVIYDAG 237
Query: 223 VDPHQHDELGKLNLTDHG 240
VD H DELG N++ G
Sbjct: 238 VDIHVDDELGYFNVSTEG 255
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ + H +M I + GDGTA I + +P + T S HC +N+P RK SDLDV + T
Sbjct: 148 LDNEHVDKVMIIDSDVHHGDGTATICESEPDIVTLSFHCDKNFPARKPDSDLDVPLSRDT 207
Query: 461 DD 462
+D
Sbjct: 208 ND 209
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
RT+ T T L+ +EK +G+ + L HHA + G+GFCL ND+A+A
Sbjct: 95 RTLTSTAGTVLT--AEKALEHGVAIHL---------SGGYHHAHKNFGSGFCLFNDLAIA 143
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
A++++ + V KV+I+D DVH
Sbjct: 144 AKHMLDNEHVDKVMIIDSDVHH 165
>gi|323498238|ref|ZP_08103240.1| histone deacetylase/AcuC/AphA family protein [Vibrio sinaloensis
DSM 21326]
gi|323316666|gb|EGA69675.1| histone deacetylase/AcuC/AphA family protein [Vibrio sinaloensis
DSM 21326]
Length = 307
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 21/260 (8%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVID----KSKQLIEPQQISESIAE 85
+P+I+ Y E LP HR+P++K+ F + + + D + + ++PQ +S+ E
Sbjct: 2 IPLIYHAIYSELPLPEGHRYPINKYRLLFEAIEQQRAEDTKWNNTFRYVQPQAVSQQEVE 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH +EY+ +G + + GF WS L +R T T + +A++L
Sbjct: 62 QVHCREYIQLLTSGTLAAPKMRRIGFPWSEELITRTLTSAGGTCETVSQCLDYGVAIHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ-PVS 195
F L + + +A L+ D ++ +H G T
Sbjct: 122 GGYHHAHYDFGSGFCLVNDLVLAAKRALTLEG----VDKVLIVDSDVHHGDGTATLCEDE 177
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL--NLTDHGECISSSARISSEA 253
TL H KPD + + DE ++ + + I +A
Sbjct: 178 ASIVTLSFHCEKNFPARKPDSDLDIPLARETRDDEFLPTFRSVVEMAVNLHQPDLIVYDA 237
Query: 254 GVDPHQHDELGKLNLTDHGV 273
GVD H+ DELG LN++ G+
Sbjct: 238 GVDIHEDDELGYLNVSSEGI 257
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ LAA+ + V KVLIVD DVH
Sbjct: 125 HHAHYDFGSGFCLVNDLVLAAKRALTLEGVDKVLIVDSDVH 165
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 403 SSHRALIME-------IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++ RAL +E + + GDGTA + + + ++ T S HC +N+P RK SDLD+
Sbjct: 144 AAKRALTLEGVDKVLIVDSDVHHGDGTATLCEDEASIVTLSFHCEKNFPARKPDSDLDIP 203
Query: 456 IDVGTDD 462
+ T D
Sbjct: 204 LARETRD 210
>gi|254230476|ref|ZP_04923852.1| histone deacetylase family, putative [Vibrio sp. Ex25]
gi|262393694|ref|YP_003285548.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. Ex25]
gi|151937004|gb|EDN55886.1| histone deacetylase family, putative [Vibrio sp. Ex25]
gi|262337288|gb|ACY51083.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. Ex25]
Length = 307
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 399 SGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDV 458
++ H ++ I + GDGTA + +P + T S HC +N+P RK SDLDV +
Sbjct: 146 QALEVEHVDKVLIIDSDVHHGDGTATLCHDEPDIITLSFHCDKNFPARKPQSDLDVPLVR 205
Query: 459 GTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCL 518
GT D FL+ F
Sbjct: 206 GTGDED--------------------------FLM---------------------AFKE 218
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTA 578
+ DMAL L R +V + +D+HQ L G+ RD +++ T
Sbjct: 219 VVDMALN---LHRPDLV--IYDAGVDIHQDDE------LGYFDVSTQGILERDRFLMQTM 267
Query: 579 ISAGIPVATVTGGGY 593
S GIPVA V GGGY
Sbjct: 268 KSRGIPVAAVVGGGY 282
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK---QLIEPQQISESIAEL 86
LP I+ Y + LP HR+P+ K+ + ++ D K Q +P+ ++ +
Sbjct: 2 LPFIYHPIYSQLELPEGHRYPIMKYQYLYESVLVHMEKDNWKEHVQFFQPEALTVEEVKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
VH +EYV NG + + GF WS L +R T T + A
Sbjct: 62 VHDQEYVDLLVNGNMPAAKMRRIGFPWSESLITRTLTSAAGTALTA 107
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + G+GFCL ND+ +AAR + V KVLI+D DVH
Sbjct: 124 HHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHH 165
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 200 TLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
KE + L +PDLVIYDAGVD HQ DELG +++ G
Sbjct: 215 AFKEVVDMALNLHRPDLVIYDAGVDIHQDDELGYFDVSTQG 255
>gi|423687680|ref|ZP_17662483.1| deacetylase [Vibrio fischeri SR5]
gi|371493463|gb|EHN69066.1| deacetylase [Vibrio fischeri SR5]
Length = 298
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 71/192 (36%), Gaps = 58/192 (30%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + T S HC +N+P RK SD DV + VGT D
Sbjct: 162 GDGTATLCADRGDIITLSFHCDKNFPARKPMSDYDVPLPVGTQD---------------- 205
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
FL + +I + +H PD +
Sbjct: 206 --------NEFLEAFK----QIVEMAINHHQPD--------------------------L 227
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+I D V H L LS GLY RD ++ A GIP+A V GGGY ++ +
Sbjct: 228 IIYDAGVDIHIDD----ELGYLSVSTEGLYQRDRFMKSIATQKGIPIACVVGGGYRSNHE 283
Query: 599 QLAQRQTIIHRA 610
L + + RA
Sbjct: 284 DLVEPHLQLIRA 295
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 49/252 (19%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
I H + LP HR+P+ K+ + + ++ D+ + EP +S + VH + Y
Sbjct: 5 IYHPIYSQLALPDGHRYPIQKYQRLYQ-AIQSHYSDEVYRCFEPIPLSIEAIKQVHEENY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQRRP 143
V+ G + + GF WS L R + D + A++L
Sbjct: 64 VNALVTGTLPAAKMRRIGFPWSESLIGRTLLSASGTCLTVDKALENGSAIHLSGGYHHAH 123
Query: 144 VFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------------ 191
F L + + IA + L + + D ++ +H G T
Sbjct: 124 YDFGSGFCLVNDLVIAAH--HGLSKDSI--DKVLIIDSDVHHGDGTATLCADRGDIITLS 179
Query: 192 ----------QPVSGYQATL-------------KEHLPGILAQFKPDLVIYDAGVDPHQH 228
+P+S Y L K+ + + +PDL+IYDAGVD H
Sbjct: 180 FHCDKNFPARKPMSDYDVPLPVGTQDNEFLEAFKQIVEMAINHHQPDLIIYDAGVDIHID 239
Query: 229 DELGKLNLTDHG 240
DELG L+++ G
Sbjct: 240 DELGYLSVSTEG 251
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ +AA + + + KVLI+D DVH
Sbjct: 120 HHAHYDFGSGFCLVNDLVIAAHHGLSKDSIDKVLIIDSDVHH 161
>gi|163802804|ref|ZP_02196693.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. AND4]
gi|159173344|gb|EDP58167.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. AND4]
Length = 307
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +GI + L HHA D G+GFCL ND+A+
Sbjct: 94 TRTLTSTAGTVLT--AEKALEHGIAVHL---------SGGYHHAHKDFGSGFCLFNDLAI 142
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA+ ++ H ++ KV+I+D DVH
Sbjct: 143 AAKRMLGHELIDKVMIIDSDVHH 165
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 79/212 (37%), Gaps = 62/212 (29%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
+M I + GDGTA + + + T S HC +N+P RK SDLDV + GT+D
Sbjct: 156 VMIIDSDVHHGDGTATLCQDESDIITLSFHCDKNFPARKPDSDLDVPLGRGTNDE----- 210
Query: 469 ALTWVTFLSQRSE--KMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAA 526
TFL E +M N I+R PD
Sbjct: 211 -----TFLEAFKEVVEMAVN-------------IHR-------PD--------------- 230
Query: 527 RYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVA 586
++I D V HT L G++ RD +++ IPVA
Sbjct: 231 -----------MVIYDAGVDIHTDD----ELGYFKVSTEGIFERDRFLMQLMKDKDIPVA 275
Query: 587 TVTGGGYCADIDQLAQRQTIIHRAATHVYKER 618
V GGGY ++ L + AA VYK R
Sbjct: 276 AVVGGGYRSEHADLVPIHMQLIDAAESVYKRR 307
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVID---KSKQLIEPQQISESIAEL 86
LP+I+ Y + LP HR+P+ K+ + + + + + + + +P +S +
Sbjct: 2 LPLIYHPIYSQLDLPKGHRYPIMKYHHLYQAVEQKRALGCWGRQVEFFQPTSLSVDEVKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL 135
VH++EYV +G + + GF WS L +R T T H IAV+L
Sbjct: 62 VHSEEYVDLLVSGAIPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGIAVHL 119
>gi|207742992|ref|YP_002259384.1| hypothetical protein RSIPO_01159 [Ralstonia solanacearum IPO1609]
gi|206594389|emb|CAQ61316.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
Length = 302
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 135 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDA 186
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 49 DPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCV 108
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+AAR++ R G V IVDLDVHQ
Sbjct: 109 FNDAAIAARWMQRRPGRAPGDFPVAIVDLDVHQ 141
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 88/249 (35%), Gaps = 77/249 (30%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEYVHKFFNGKTTEKEQKV 108
M K+S L+R+++ + L+ E + + L H +Y+ GK Q+
Sbjct: 1 MRKYS-----LLRERIEAEVPGLVLHEAPRAGDDALLLAHAPDYIDAVGAGKLDPARQRE 55
Query: 109 TGFEWSAGLASRVRTDPVPTHV---------IAVYLP-----FFLQRRPVF--FDIAAVL 152
GF WS + R R T IAV L + + F F+ AA+
Sbjct: 56 IGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIA 115
Query: 153 ADLICIAVYLTFFLQRRP------------------------VFFDIAAVLADLIHFMVG 188
A ++QRRP + D A+V +H G
Sbjct: 116 AR----------WMQRRPGRAPGDFPVAIVDLDVHQGNGTASILRDDASVFTLSVH---G 162
Query: 189 INTQPVSGYQATLKEHLP-----------------GILAQFKPDLVIYDAGVDPHQHDEL 231
P + L LP + A+F P L+IY AG DPH+ D L
Sbjct: 163 EKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDALAARFAPRLIIYLAGADPHEGDRL 222
Query: 232 GKLNLTDHG 240
G+L LT G
Sbjct: 223 GRLKLTMDG 231
>gi|421898145|ref|ZP_16328512.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
gi|206589351|emb|CAQ36313.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
Length = 302
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 135 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDA 186
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 49 DPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCV 108
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+AA ++ R G V IVDLDVHQ
Sbjct: 109 FNDAAIAALWMQRRPGRAPGDFPVAIVDLDVHQ 141
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 88/249 (35%), Gaps = 77/249 (30%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEYVHKFFNGKTTEKEQKV 108
M K+S L+R+++ + L+ E + + L H +Y+ GK Q+
Sbjct: 1 MRKYS-----LLRERIEAEVPGLVLHEAPRAGDDALLLAHAPDYIDAVGAGKLDPARQRE 55
Query: 109 TGFEWSAGLASRVRTDPVPTHV---------IAVYLP-----FFLQRRPVF--FDIAAVL 152
GF WS + R R T IAV L + + F F+ AA+
Sbjct: 56 IGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCVFNDAAIA 115
Query: 153 ADLICIAVYLTFFLQRRP------------------------VFFDIAAVLADLIHFMVG 188
A ++QRRP + D A+V +H G
Sbjct: 116 A----------LWMQRRPGRAPGDFPVAIVDLDVHQGNGTASILRDDASVFTLSVH---G 162
Query: 189 INTQPVSGYQATLKEHLP-----------------GILAQFKPDLVIYDAGVDPHQHDEL 231
P + L LP + A+F P L+IY AG DPH+ D L
Sbjct: 163 EKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDALAARFAPRLIIYLAGADPHEGDRL 222
Query: 232 GKLNLTDHG 240
G+L LT G
Sbjct: 223 GRLKLTMDG 231
>gi|163850153|ref|YP_001638196.1| histone deacetylase superfamily protein [Methylobacterium
extorquens PA1]
gi|163661758|gb|ABY29125.1| histone deacetylase superfamily [Methylobacterium extorquens PA1]
Length = 308
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LP ++ F PDL+ Y+AGVDPH+ D LG+L LTD G
Sbjct: 217 YCAVLEARLPALVQNFAPDLIFYNAGVDPHRDDRLGRLCLTDAG 260
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RALI++ L + GDGTA ++P +FT S+HC RNYP K DLD+ + G DDA
Sbjct: 160 RALIVD--LDVHQGDGTADCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDA 215
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + LIVDLDVHQ
Sbjct: 127 GSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQ 170
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD YV+ A S IP+ V GGGY D+D LA R ++ A
Sbjct: 260 GLLARDRYVVGLAQSQRIPLCAVIGGGYGNDVDALAARHALVFEA 304
>gi|91203564|emb|CAJ71217.1| similar to histone deacetylase [Candidatus Kuenenia
stuttgartiensis]
Length = 313
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA PD G GFCL N++A+AARYL ++ +++LI+D DVH
Sbjct: 123 HHATPDRGMGFCLFNNVAIAARYLQKNYQQKRILIIDWDVHH 164
>gi|83745862|ref|ZP_00942919.1| Deacetylase [Ralstonia solanacearum UW551]
gi|83727552|gb|EAP74673.1| Deacetylase [Ralstonia solanacearum UW551]
Length = 324
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDA 208
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+AAR++ R G V IVDLDVHQ
Sbjct: 131 FNDAAIAARWMQRRPGRAPGDFPVAIVDLDVHQ 163
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R+++ + L+ E + + L H +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERIEAEVPGLVLHEAPRAGDDALLLAHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+ GK Q+ GF WS + R R
Sbjct: 62 IDAVGAGKLDPARQREIGFPWSPAMVERSR 91
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 211 QFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+F P L+IY AG DPH+ D LG+L LT G
Sbjct: 224 RFAPRLIIYLAGADPHEGDRLGRLKLTMDG 253
>gi|410632681|ref|ZP_11343334.1| histone deacetylase family protein [Glaciecola arctica BSs20135]
gi|410147760|dbj|GAC20201.1| histone deacetylase family protein [Glaciecola arctica BSs20135]
Length = 298
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L QRS + L L + + HHAF ++G+GFCL
Sbjct: 72 DPKAMRRIGFPWSEQLIQRSLTAVGGTVLTAELALQHGKALNLTGGYHHAFANYGSGFCL 131
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+ LAA +++ + KVLI D DVHQ
Sbjct: 132 FNDLYLAALTMLQKPNIDKVLIFDCDVHQ 160
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + + + VFT S+H +N+P RKQ SDLD + GT D
Sbjct: 159 HQGDGTAKLAESNAQVFTLSIHGEKNFPHRKQVSDLDFNLAKGTTD 204
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
G+Y RD V DT G+P+A V GGGY DID L + + +AA
Sbjct: 250 GVYQRDCLVFDTCQRKGLPIAAVIGGGYQRDIDALVKVHLQLFKAA 295
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + L HRFP+ K+ + L V DKS Q +P +S V +Y
Sbjct: 5 VFHPIYSQLDLAVRHRFPIEKYQGIRDRLAELGVTDKSFQ--QPMPVSPQDLRQVFNPQY 62
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+ + +G K + GF WS L R T
Sbjct: 63 IQQLVSGTLDPKAMRRIGFPWSEQLIQRSLT 93
>gi|254559298|ref|YP_003066393.1| histone deacetylase [Methylobacterium extorquens DM4]
gi|254266576|emb|CAX22340.1| Histone deacetylase family protein [Methylobacterium extorquens
DM4]
Length = 297
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LP ++ F PDL+ Y+AGVDPH+ D LG+L LTD G
Sbjct: 206 YCAVLEARLPALVQNFAPDLIFYNAGVDPHRDDRLGRLCLTDAG 249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RALI++ L + GDGTA ++P +FT S+HC RNYP K DLD+ + G DDA
Sbjct: 149 RALIVD--LDVHQGDGTADCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDA 204
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + LIVDLDVHQ
Sbjct: 116 GSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQ 159
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD YV+ A S IP+ V GGGY D+D LA R ++ A
Sbjct: 249 GLLARDRYVVGLAQSQRIPLCAVIGGGYGNDVDALAARHALVFEA 293
>gi|296123734|ref|YP_003631512.1| histone deacetylase [Planctomyces limnophilus DSM 3776]
gi|296016074|gb|ADG69313.1| Histone deacetylase [Planctomyces limnophilus DSM 3776]
Length = 311
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFS---KTFNYLVRDKVID-KSKQLIEPQQISESIAELVH 88
I T ++ LPP HRFPM K++ + + ++ ID ++ +L+EP +++ L H
Sbjct: 3 IYTTERFVLPLPPGHRFPMRKYAALRERIDLALQSGEIDPQTIELLEPPAATDAQILLAH 62
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+Y++K G+ T + K GF WS L R R
Sbjct: 63 NADYLYKVSAGEMTRDDIKRLGFPWSPELIERSR 96
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ D GFC+ ND +AAR L + +V++VLIVD DVHQ
Sbjct: 121 GTHHAYADRAEGFCIFNDSVIAARVLQKEQLVQRVLIVDGDVHQ 164
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 416 CYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLD-------------VAIDVGTDD 462
+ G+GTA I +DP++FTFS+H RNYPF K+ SDLD A+D G
Sbjct: 162 VHQGNGTAAITRQDPSIFTFSIHSERNYPFVKETSDLDYGLPDETGDDAYLAALDEGLAA 221
Query: 463 AGNRTVALTWVTFLSQ----RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFP 510
R V FL+ +KM + LR D + RF + P
Sbjct: 222 CARRFPQPDLVLFLAGADPFEGDKMGRLALTKAGLRARDRLVYRFCEQYGLP 273
>gi|328949949|ref|YP_004367284.1| histone deacetylase [Marinithermus hydrothermalis DSM 14884]
gi|328450273|gb|AEB11174.1| Histone deacetylase [Marinithermus hydrothermalis DSM 14884]
Length = 294
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
R ++ + L + G+GTA F DP VFT S+H NYP K+ SDLDV + T DA
Sbjct: 143 RGRVLVVDLDAHQGNGTAVFFQDDPTVFTLSVHAANNYPRHKEQSDLDVPLPDRTPDA 200
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+PD G+ L ND+A+A R+L G +VL+VDLD HQ
Sbjct: 112 GTHHAYPDRAEGYSLFNDVAVAVRWLRAQGFRGRVLVVDLDAHQ 155
>gi|291296879|ref|YP_003508277.1| histone deacetylase superfamily protein [Meiothermus ruber DSM
1279]
gi|290471838|gb|ADD29257.1| histone deacetylase superfamily [Meiothermus ruber DSM 1279]
Length = 296
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
++ + L + G+GTA F DP VFT S+H RNYP +K+ DL+V + T+D
Sbjct: 146 VLVVDLDAHQGNGTAAFFRNDPTVFTLSVHAERNYPLKKEPGDLNVGLADATND 199
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+P G+CL ND+A+A YL G +VL+VDLD HQ
Sbjct: 112 GTHHAYPGRAEGYCLFNDVAVAIAYLRAQGWNGRVLVVDLDAHQ 155
>gi|409122167|ref|ZP_11221562.1| histone deacetylase [Gillisia sp. CBA3202]
Length = 325
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
+ L + G+GTA IF +D +VFTFS+H NY FRK+ SDLD+ + D G++
Sbjct: 154 VDLDVHQGNGTAEIFREDASVFTFSIHGKNNYSFRKETSDLDIEL---VDQTGDKDYLEV 210
Query: 472 WVTFLSQRSEKMRNNGIF 489
L + K++ + IF
Sbjct: 211 LKNTLPELINKVKPDFIF 228
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA+ HG FCL+ND A+AARYL + ++K+LIVDLDVHQ
Sbjct: 117 GTHHAYTSHGEAFCLLNDQAIAARYLQKKKGIKKILIVDLDVHQ 160
>gi|386333349|ref|YP_006029518.1| deacetylase [Ralstonia solanacearum Po82]
gi|334195797|gb|AEG68982.1| Deacetylase [Ralstonia solanacearum Po82]
Length = 324
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ L + G+GTA I D +VFT S+H +NYPFRK+ SDLDV + G DA
Sbjct: 157 VDLDVHQGNGTASILRDDASVFTLSVHGEKNYPFRKEASDLDVGLPDGCGDA 208
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP-EIN-RFSTHHAFPDHGAGFCL 518
D A R + W + +RS + + ++D +N THHA+ D G GFC+
Sbjct: 71 DPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRH-GIVRK---VLIVDLDVHQ 547
ND A+AAR++ R G + V IVDLDVHQ
Sbjct: 131 FNDAAIAARWMQRRPGRAPEDFPVAIVDLDVHQ 163
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELVHTKEY 92
+T+ + LPP HRFPM K+S L+R+++ + L+ E + + L H +Y
Sbjct: 7 YTDHFVLPLPPGHRFPMRKYS-----LLRERIAAEVPGLVLHEAPRAGDDALLLAHAPDY 61
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+ GK Q+ GF WS + R R
Sbjct: 62 IDAVGAGKLDPARQREIGFPWSPAMVERSR 91
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 211 QFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+F P L+IY AG DPH+ D LG+L LT G
Sbjct: 224 RFAPCLIIYLAGADPHEGDRLGRLKLTMDG 253
>gi|423197320|ref|ZP_17183903.1| hypothetical protein HMPREF1171_01935 [Aeromonas hydrophila SSU]
gi|404631008|gb|EKB27644.1| hypothetical protein HMPREF1171_01935 [Aeromonas hydrophila SSU]
Length = 298
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 458 VGTDDAGN-RTVALTWVTFLSQRSEKMRNNGIFLF-----LLRLSDPEINRFSTHHAFPD 511
GT DAG R + W L +R+ +R+ G L L++ +I+ HHA D
Sbjct: 66 AGTLDAGAIRQLGFPWSPVLIERT--LRSVGATLAASRHALVQGCGLQISG-GYHHAHRD 122
Query: 512 HGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
G+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 123 FGSGFCLFNDLVIAAQTCLDEGRCEQVLIVDLDVHQ 158
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL E L L + PDL++Y AGVD H DELG L+L++ G
Sbjct: 205 YLTTLAEALNLALRLYTPDLILYQAGVDVHHADELGYLSLSNEG 248
>gi|221487136|gb|EEE25382.1| histone deacetylase, putative [Toxoplasma gondii GT1]
Length = 1127
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI+++ + + GDGTA IF +P V T S+HC N+PF K SD+D+ + GT D
Sbjct: 864 AERILILDLDV--HQGDGTAEIFSNEPRVKTVSIHCEDNFPFPKAQSDVDIGLPAGTGD 920
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G FC+ ND+A+AA ++ GI ++LI+DLDVHQ
Sbjct: 834 THHAKTDSGGKFCVFNDVAVAAALALKQGIAERILILDLDVHQ 876
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP +L + +P L++Y AGVD H+ D G +TD G
Sbjct: 923 YLRQLNEVLPRVLLEHRPTLILYVAGVDIHEQDTFGNFQITDAG 966
>gi|27366395|ref|NP_761923.1| Histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
CMCP6]
gi|27362596|gb|AAO11450.1| Histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
CMCP6]
Length = 312
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +G+ + L HHA D+G+GFCL ND+ +
Sbjct: 97 ERTLTSTAGTVLT--AEKALQHGVAIHL---------SGGYHHAHFDYGSGFCLFNDLVM 145
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA + HG V KVLI+D DVH
Sbjct: 146 AAHKALEHGSVDKVLIIDSDVHH 168
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 53/259 (20%)
Query: 28 LVHLPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISES 82
++ +P+I+ Y + LP HR+P+ K+ + + R + Q +P+ +S
Sbjct: 1 MMSIPLIYHPIYSQLPLPEGHRYPIMKYHHLYQAVCRYQQQHLEWQQAFAFYQPEALSIE 60
Query: 83 IAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAV 133
+ VH +EYV G + + GF WS L R T T H +A+
Sbjct: 61 AIKQVHQQEYVDLLTTGLLPAAKMRRIGFPWSEKLIERTLTSTAGTVLTAEKALQHGVAI 120
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ- 192
+L + L + + +A + L+ V D ++ +H G T
Sbjct: 121 HLSGGYHHAHFDYGSGFCLFNDLVMAAHKA--LEHGSV--DKVLIIDSDVHHGDGTATLC 176
Query: 193 -----------------PVSGYQATLKEHLP------GILAQFK-----------PDLVI 218
P + L LP LA FK PDL+I
Sbjct: 177 QRRDDIVTLSFHCDKNFPARKPDSDLDIGLPRECGDEAFLAAFKEVVPMAIRLHQPDLII 236
Query: 219 YDAGVDPHQHDELGKLNLT 237
YDAGVD H DELG LN++
Sbjct: 237 YDAGVDIHHEDELGYLNVS 255
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 65/221 (29%)
Query: 403 SSHRAL-------IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++H+AL ++ I + GDGTA + + + T S HC +N+P RK SDLD+
Sbjct: 146 AAHKALEHGSVDKVLIIDSDVHHGDGTATLCQRRDDIVTLSFHCDKNFPARKPDSDLDIG 205
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAG 515
+ D FL+ E + +RL P++
Sbjct: 206 LPRECGDEA----------FLAAFKE------VVPMAIRLHQPDL--------------- 234
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVL 575
+I D V H L L+ LY RD ++
Sbjct: 235 -----------------------IIYDAGVDIHHED----ELGYLNVSTDALYQRDAFLF 267
Query: 576 DTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
A + IPVA V GGGY D + L + AA VY+
Sbjct: 268 GQAKANAIPVAAVVGGGYRTDHEALVPLHLQLLNAAFDVYR 308
>gi|406676510|ref|ZP_11083696.1| hypothetical protein HMPREF1170_01904 [Aeromonas veronii AMC35]
gi|404626733|gb|EKB23543.1| hypothetical protein HMPREF1170_01904 [Aeromonas veronii AMC35]
Length = 298
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST----HHAFPDHGAGFCLMND 521
R + W L +R+ +R+ G + R + + HHA DHG+GFCL ND
Sbjct: 75 RKIGFPWSPMLMERT--LRSVGATIAASRHALEQGCGLQISGGYHHAHRDHGSGFCLFND 132
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
+ +AA+ + G +VLI+DLDVHQ
Sbjct: 133 LVIAAQACLDEGRCEQVLIIDLDVHQ 158
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 60/193 (31%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDDAGNRT 467
++ I L + GDG+A + + + T S+H N+P K S LD + G TDDA
Sbjct: 149 VLIIDLDVHQGDGSAALCAERRDIITLSLHGEHNFPHHKAASHLDFPLPSGMTDDA---- 204
Query: 468 VALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAAR 527
++T L Q LRL P++ +
Sbjct: 205 ----YLTTLQQ---------ALSLALRLYSPDLILYQA---------------------- 229
Query: 528 YLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVAT 587
+DVH L LS G+ +RD V D A+ G+P+A
Sbjct: 230 --------------GVDVHH------ADELGYLSLSDEGVRLRDAMVFDCALLHGVPIAA 269
Query: 588 VTGGGYCADIDQL 600
V GGGY D QL
Sbjct: 270 VPGGGYRRDWQQL 282
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L L + PDL++Y AGVD H DELG L+L+D G
Sbjct: 205 YLTTLQQALSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEG 248
>gi|375130376|ref|YP_004992476.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii NCTC
11218]
gi|315179550|gb|ADT86464.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii NCTC
11218]
Length = 306
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 52/255 (20%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVR---DKVIDKSKQLIEPQQISESIAEL 86
+P+I+ + Y + LPP HR+P++K+ ++ L+ D ++ + P ++ +
Sbjct: 2 IPLIYHSIYSQLPLPPGHRYPINKYRLLYDALMEMQADADWLRTFEFFSPTALTCDAIKQ 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF 137
VH EYV G + + GF WS L R T T H +A++L
Sbjct: 62 VHDSEYVDALTFGTLPAAKMRRIGFPWSDALIERTLTSAGGTCLTAQLAVEHGVAIHLSG 121
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------ 191
F L + + +A + L D ++ +H G T
Sbjct: 122 GYHHAHRDFGSGFCLYNDLVLAAHQALLLDG----IDKVLIVDSDVHHGDGTATLCAARD 177
Query: 192 ----------------QPVSGYQATLKEHLPG--ILAQFK-----------PDLVIYDAG 222
+P S L L+ F+ PDL+IYDAG
Sbjct: 178 DIITLSFHCDKNFPARKPESDIDIALSRDAGDEEFLSHFQSVVTMAVNLHRPDLIIYDAG 237
Query: 223 VDPHQHDELGKLNLT 237
+D HQ DELG +++
Sbjct: 238 IDIHQDDELGYFHVS 252
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 65/222 (29%)
Query: 403 SSHRALIME-------IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++H+AL+++ + + GDGTA + + T S HC +N+P RK SD+D+A
Sbjct: 143 AAHQALLLDGIDKVLIVDSDVHHGDGTATLCAARDDIITLSFHCDKNFPARKPESDIDIA 202
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAG 515
+ + DAG+ FLS + + L P++ + AG
Sbjct: 203 L---SRDAGDE-------EFLSHF------QSVVTMAVNLHRPDLIIYD---------AG 237
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVL 575
+D+HQ L ++ RD +++
Sbjct: 238 ---------------------------IDIHQDDE------LGYFHVSTDAIFQRDCFMM 264
Query: 576 DTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A +P+A V GGGY +D L + +AA HV+KE
Sbjct: 265 RLAKQHQLPMACVVGGGYRSDHQTLVPIHMQLFKAAFHVHKE 306
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ LAA + + KVLIVD DVH
Sbjct: 124 HHAHRDFGSGFCLYNDLVLAAHQALLLDGIDKVLIVDSDVHH 165
>gi|221506821|gb|EEE32438.1| histone deacetylase, putative [Toxoplasma gondii VEG]
Length = 1127
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI+++ + + GDGTA IF +P V T S+HC N+PF K SD+D+ + GT D
Sbjct: 864 AERILILDLDV--HQGDGTAEIFSNEPRVKTVSIHCEDNFPFPKAQSDVDIGLPAGTGD 920
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G FC+ ND+A+AA ++ GI ++LI+DLDVHQ
Sbjct: 834 THHAKTDSGGKFCVFNDVAVAAALALKQGIAERILILDLDVHQ 876
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP +L + +P L++Y AGVD H+ D G +TD G
Sbjct: 923 YLRQLNEVLPRVLLEHRPTLILYVAGVDIHEQDTFGNFQITDAG 966
>gi|260219472|emb|CBA26317.1| Uncharacterized protein SYNPCC7002_A1628 [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 317
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I L + G+GTA IF D +VFT S+H +N+PFRK+ SDLD+ + G DA
Sbjct: 162 IDLDVHQGNGTASIFRHDESVFTLSLHGDKNFPFRKEDSDLDIPLPDGCADA 213
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK--SKQLIEPQQISESIAELVHTKEY 92
+++++ LP HRFPM+K+ ++RD++ D+ S QL E +E LVHT Y
Sbjct: 5 YSDQFVLPLPEGHRFPMAKYR-----MLRDRIADELPSIQLTEAPAATEGELALVHTPAY 59
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+ G + GF WS +A R
Sbjct: 60 IDSILQGTAEPAVLREIGFPWSPAMAERA 88
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGFCLMND 521
R + W +++R+ +R+ G + R++ E N THHA+ G GFC+ ND
Sbjct: 74 REIGFPWSPAMAERA--LRSVGATVAAARVAMIEGLAANLAGGTHHAYAHKGGGFCVFND 131
Query: 522 MALAARYL------IRH--GIVR---KVLIVDLDVHQ 547
+A+AAR L RH G R +V ++DLDVHQ
Sbjct: 132 LAVAARVLQAEWGRSRHPDGSRRQPLQVAVIDLDVHQ 168
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y +TL+ L + +F P LV + AG DPH+ D LG+L LT G
Sbjct: 215 YLSTLEHALQELEGRFTPGLVFFLAGADPHEGDRLGRLKLTADG 258
>gi|240137289|ref|YP_002961758.1| histone deacetylase family protein [Methylobacterium extorquens
AM1]
gi|240007255|gb|ACS38481.1| Histone deacetylase family protein [Methylobacterium extorquens
AM1]
Length = 297
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ LP ++ F PDL+ Y+AGVDPH+ D LG+L LTD G
Sbjct: 206 YFAVLEARLPALVQNFAPDLIFYNAGVDPHRDDRLGRLCLTDAG 249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RALI++ L + GDGTA ++P +FT S+HC RNYP K DLD+ + G DDA
Sbjct: 149 RALIVD--LDVHQGDGTADCLAREPDLFTLSIHCERNYPHDKVPGDLDIGLPDGLDDA 204
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + LIVDLDVHQ
Sbjct: 116 GSHHARRAGGAGFCVFNDVAVAALALRREGAITRALIVDLDVHQ 159
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610
GL RD YV+ A S IP+ V GGGY +D+D LA R ++ A
Sbjct: 249 GLLARDRYVVGLAQSQRIPLCAVIGGGYGSDVDALAARHALVFEA 293
>gi|59713550|ref|YP_206325.1| deacetylase [Vibrio fischeri ES114]
gi|59481798|gb|AAW87437.1| deacetylase [Vibrio fischeri ES114]
Length = 298
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 93/252 (36%), Gaps = 49/252 (19%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
I H + LP HR+P+ K+ + + ++ D+ EP +S + VH + Y
Sbjct: 5 IYHPIYSQLALPDGHRYPIQKYQRLYQ-AIQSHYSDELYCCFEPIPLSIEAIKQVHEENY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLPFFLQRRP 143
V+ G + + GF WS L R + D + A++L
Sbjct: 64 VNALVTGTLPAAKMRRIGFPWSESLIERTLLSASGTCLTVDKALENGSAIHLSGGYHHAH 123
Query: 144 VFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT------------ 191
F L + + IA + L + + D ++ +H G T
Sbjct: 124 YDFGSGFCLVNDLAIAAH--HGLSKDSI--DKVLIIDSDVHHGDGTATLCADRGDIITLS 179
Query: 192 ----------QPVSGYQATL------KEHLPGI-------LAQFKPDLVIYDAGVDPHQH 228
+P+S Y L E L + +PDL+IYDAGVD H
Sbjct: 180 FHCDKNFPARKPISDYDVPLAIGTQDNEFLEAFEQIVEMAINHHQPDLIIYDAGVDIHID 239
Query: 229 DELGKLNLTDHG 240
DELG LN++ G
Sbjct: 240 DELGYLNISTEG 251
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 58/192 (30%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + T S HC +N+P RK SD DV + +GT D
Sbjct: 162 GDGTATLCADRGDIITLSFHCDKNFPARKPISDYDVPLAIGTQD---------------- 205
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
N + F +I + +H PD +
Sbjct: 206 ------NEFLEAF------EQIVEMAINHHQPD--------------------------L 227
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+I D V H L L+ GLY RD ++ + GIP+A V GGGY ++ +
Sbjct: 228 IIYDAGVDIHIDD----ELGYLNISTEGLYQRDKFMRNITAQKGIPIACVVGGGYRSNHE 283
Query: 599 QLAQRQTIIHRA 610
L + + RA
Sbjct: 284 DLVEPHLQLIRA 295
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+A+AA + + + KVLI+D DVH
Sbjct: 120 HHAHYDFGSGFCLVNDLAIAAHHGLSKDSIDKVLIIDSDVHH 161
>gi|392544970|ref|ZP_10292107.1| histone deacetylase [Pseudoalteromonas rubra ATCC 29570]
Length = 307
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
L + GDGTA + +P VFT S+HC +N+PFRK SDLD+ + DA
Sbjct: 165 LDVHQGDGTAAMLKHNPYVFTCSIHCEKNFPFRKHSSDLDIGLTNNLKDA 214
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G+G+C++ND+ + LI G V VLI DLDVHQ
Sbjct: 126 GTHHAHYDFGSGYCMVNDLVFTSTTLIAQGKVNNVLIFDLDVHQ 169
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
LP+++ Y + PNHRF MSKF+ + + +I + +P+ S E VH
Sbjct: 12 LPLVYHPNYSFSFDPNHRFVMSKFANLYQQVRAMGLI--GDNVYQPELGSPEPLETVHCD 69
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT 128
Y+ + + K + G WS L +R T P+ T
Sbjct: 70 TYLWDLWRNQLDAKSMRRIGLPWSEQLMARTFTAPLGT 107
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 190 NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
N + Y +++ L G+L PDLV+YDAGVD +HD LGKL+++ G
Sbjct: 209 NNLKDADYLQIVEDTLTGLLEDVNPDLVLYDAGVDIWEHDGLGKLDISWRG 259
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
GL RD VL T AG+PVATV GGGY D +LA+R I+
Sbjct: 259 GLEQRDALVLKTCQQAGVPVATVIGGGYDKDHLRLAKRHAIV 300
>gi|423200322|ref|ZP_17186902.1| hypothetical protein HMPREF1167_00485 [Aeromonas veronii AER39]
gi|404619730|gb|EKB16634.1| hypothetical protein HMPREF1167_00485 [Aeromonas veronii AER39]
Length = 298
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA DHG+GFCL ND+ +AA+ + G +VLI+DLDVHQ
Sbjct: 117 HHAHRDHGSGFCLFNDLVIAAQACLDEGRCEQVLIIDLDVHQ 158
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL++ L L + PDL++Y AGVD H DELG L+L+D G
Sbjct: 205 YLTTLQQALSLALRLYSPDLILYQAGVDVHHADELGYLSLSDEG 248
>gi|397636559|gb|EJK72326.1| hypothetical protein THAOC_06153 [Thalassiosira oceanica]
Length = 330
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQ 602
+DVH+ R L LS G+ RD +V+ T AG+PVA GGGY D ++A
Sbjct: 257 VDVHERDR------LGRLSLTTDGIRRRDMHVVRTCRGAGLPVACTVGGGYSDDPGEVAA 310
Query: 603 RQTIIHRAATHVYKE 617
R I+HR V++E
Sbjct: 311 RHAIVHRVCAEVWRE 325
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L L + + +PDLV+Y+AGVD H+ D LG+L+LT G
Sbjct: 230 GYLDALAGGLDRAIDEVRPDLVLYNAGVDVHERDRLGRLSLTTDG 274
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 396 GCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPA------VFTFSMHCGRNYPFRKQC 449
G G R L+++ + + GDGTA F P +FT +H RNYP RK+
Sbjct: 159 GLYRGESPVERVLVVDTDV--HQGDGTA-TFHNGPGSPLAGRLFTLDLHASRNYPARKEE 215
Query: 450 SDLDVAIDVGTDDAG 464
V + GTDD G
Sbjct: 216 CTYSVGLPDGTDDDG 230
>gi|393770657|ref|ZP_10359135.1| histone deacetylase [Novosphingobium sp. Rr 2-17]
gi|392723764|gb|EIZ81151.1| histone deacetylase [Novosphingobium sp. Rr 2-17]
Length = 303
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+AL A LI V ++LI+DLDVHQ
Sbjct: 115 GSHHALADSGAGYCVFNDLALTANRLIAERNVSRILILDLDVHQ 158
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 83/209 (39%), Gaps = 62/209 (29%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
R LI++ L + GDGTA + +FT S+H +N+P RK S LD VG DA
Sbjct: 148 RILILD--LDVHQGDGTAALTAGRSDIFTLSIHAEKNFPTRKARSSLD----VGLPDA-- 199
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
+ +L L S P + DH
Sbjct: 200 ------------------TGDAGYLEALAGSLPMV---------LDH------------- 219
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPV 585
V +++++ V HT L LS GL RD +V A GIP+
Sbjct: 220 --------FVPELILLQAGVDAHTDD----KLGRLSLTDEGLAHRDRFVATEAKRRGIPL 267
Query: 586 ATVTGGGYCADIDQLAQR--QTIIHRAAT 612
A+ GGGY AD + +A R +TI+ AAT
Sbjct: 268 ASTLGGGYGADREAVALRHARTILALAAT 296
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+GY L LP +L F P+L++ AGVD H D+LG+L+LTD G
Sbjct: 203 AGYLEALAGSLPMVLDHFVPELILLQAGVDAHTDDKLGRLSLTDEG 248
>gi|110833112|ref|YP_691971.1| deacetylase [Alcanivorax borkumensis SK2]
gi|110646223|emb|CAL15699.1| deacetylase family protein [Alcanivorax borkumensis SK2]
Length = 290
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 459 GTDDAGN-RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAG 515
GT DA R + L W L +RS + L L + + THHA D G+G
Sbjct: 48 GTLDAKALRRMGLPWSEALLKRSCIAPMGTLMTTQLALENGIACHLAGGTHHAHYDFGSG 107
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
FC+ ND A R L+ G+V KVL+ D DVHQ
Sbjct: 108 FCIFNDQVFAVRQLLDRGVVNKVLMFDCDVHQ 139
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 89/230 (38%), Gaps = 41/230 (17%)
Query: 51 MSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVTG 110
M KFS +L R ++ + P + ++ H +YV NG K + G
Sbjct: 1 MEKFSLLHTHLRRRRIACVDNEF-RPGRAKAALLSQAHCPQYVSAMVNGTLDAKALRRMG 59
Query: 111 FEWSAGLASRVRTDPVPT---------HVIAVYLPFFLQRRPVFFDIAAVLADLICIAV- 160
WS L R P+ T + IA +L F + + AV
Sbjct: 60 LPWSEALLKRSCIAPMGTLMTTQLALENGIACHLAGGTHHAHYDFGSGFCIFNDQVFAVR 119
Query: 161 -YLTFFLQRRPVFFD--------IAAVLADLIH-FMVGINTQ---PVSGYQATLKEHLP- 206
L + + + FD AA+LAD F I+ + PV ++ L LP
Sbjct: 120 QLLDRGVVNKVLMFDCDVHQGDGTAAMLADEPRAFTCSIHCEKNFPVRKMRSDLDVELPL 179
Query: 207 ----------------GILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+L +PDLV+YDAGVD QHD LG+L++++ G
Sbjct: 180 GMTDQDYLDTVFSTLESLLKSEQPDLVLYDAGVDIFQHDPLGRLHISEQG 229
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + +P FT S+HC +N+P RK SDLDV + +G D
Sbjct: 138 HQGDGTAAMLADEPRAFTCSIHCEKNFPVRKMRSDLDVELPLGMTD 183
>gi|412985199|emb|CCO20224.1| histone deacetylase superfamily protein [Bathycoccus prasinos]
Length = 322
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIR------HGIVRKVLIVDLDVHQ 547
THHAF HG GFC+ ND+A A R R G R VLIVDLDVHQ
Sbjct: 118 GTHHAFAGHGEGFCVFNDIACAVRVAQRDYEELFEGEDRNVLIVDLDVHQ 167
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFR-KQCSDLDVAI 456
++ + L + G+GTA IF+ D + T+S+H RNYP++ + SD D+A+
Sbjct: 158 VLIVDLDVHQGNGTAKIFENDKNIITYSIHGDRNYPWKTRMLSDYDIAL 206
>gi|56460961|ref|YP_156242.1| histone deacetylase/AcuC/AphA family protein [Idiomarina loihiensis
L2TR]
gi|56179971|gb|AAV82693.1| Histone deacetylase/AcuC/AphA family protein [Idiomarina loihiensis
L2TR]
Length = 311
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 94/256 (36%), Gaps = 49/256 (19%)
Query: 29 VHLPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV 87
V +P I++ Y E LPP HR+P+ K+ ++ V+ + Q +P+ +S
Sbjct: 4 VDVPFIYSPLYSELDLPPRHRYPIEKYRLLKDWAVKHGATN--NQWHQPEPLSWEQVART 61
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDP-------VPTHVIAVYLPFFLQ 140
H Y+ + + + GF WS L R T V + F
Sbjct: 62 HCPGYLSQLRQNSMDKSSWRRIGFPWSEQLLYRTLTSAGGTLLTTELALTKGVAIHFSGG 121
Query: 141 RRPVFFDIAAVLADLICIAVYLTFFLQRRP-------------------VFFDIAAVLAD 181
D + L +A+ L R P +F + V
Sbjct: 122 YHHAHKDWGSGFCLLNDLAIACNEILVRHPKLKIVVLDTDVHQGDGTATLFENDNRVFTC 181
Query: 182 LIHFMVGINTQPVSGYQATL----------KEHLPG-------ILAQFKPDLVIYDAGVD 224
IH G P S + L KE+L I + KPDL++YDAGVD
Sbjct: 182 SIH---GERNFPFSKASSNLDIPLAKHTSDKEYLAALENTLERINREIKPDLILYDAGVD 238
Query: 225 PHQHDELGKLNLTDHG 240
+Q DELG LN++ G
Sbjct: 239 IYQRDELGHLNISLAG 254
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA +F+ D VFT S+H RN+PF K S+LD+ + T D
Sbjct: 163 HQGDGTATLFENDNRVFTCSIHGERNFPFSKASSNLDIPLAKHTSD 208
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAA-RYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+A+A L+RH + K++++D DVHQ
Sbjct: 123 HHAHKDWGSGFCLLNDLAIACNEILVRHPKL-KIVVLDTDVHQ 164
>gi|388569916|ref|ZP_10156296.1| histone deacetylase [Hydrogenophaga sp. PBC]
gi|388262888|gb|EIK88498.1| histone deacetylase [Hydrogenophaga sp. PBC]
Length = 331
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ L + G+GTA IF D +VFT S+H +N+PFRK+ SDLDV + G D
Sbjct: 160 VDLDVHQGNGTARIFAGDASVFTLSLHGAKNFPFRKEPSDLDVELPDGCAD 210
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS------THHAFPDHGAGFCL 518
R + W T +++R+ R+ G L R + + THHA+ D G GFC+
Sbjct: 73 QREIGFPWSTAMAERAR--RSVGATLQAARRVMGQGGGLAANLAGGTHHAYADKGGGFCV 130
Query: 519 MNDMALAARYLIRHGIVR-------KVLIVDLDVHQ 547
ND A+AAR + R +V IVDLDVHQ
Sbjct: 131 FNDFAVAARLMQAEHARRHDRREPLRVAIVDLDVHQ 166
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 34 IHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYV 93
+ + + LP HRFPM+K+++ L R+ ++ E S+ LVHT Y+
Sbjct: 4 FYADHFVLPLPSGHRFPMAKYAQLRERLAREC---PEVEMHEALPASDGELTLVHTPAYI 60
Query: 94 HKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
+G + Q+ GF WS +A R R
Sbjct: 61 DAVASGTLSPALQREIGFPWSTAMAERAR 89
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 211 QFKPDLVIYDAGVDPHQHDELGKLNLT 237
+F+P+LV+Y AG DPH+ D LG+L L+
Sbjct: 227 RFEPELVLYLAGADPHEGDRLGRLKLS 253
>gi|398384724|ref|ZP_10542752.1| deacetylase, histone deacetylase/acetoin utilization protein
[Sphingobium sp. AP49]
gi|397722004|gb|EJK82549.1| deacetylase, histone deacetylase/acetoin utilization protein
[Sphingobium sp. AP49]
Length = 299
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA D GAG+C+ ND+A+AA LI G +LI+DLDVHQ
Sbjct: 115 GSHHALADTGAGYCIFNDLAIAANRLIAEGDAAHILILDLDVHQ 158
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L + LP +L F PDL++Y AG+D H D LG+L LTD G
Sbjct: 205 YLAALADILPRVLDDFMPDLILYQAGIDSHVDDRLGRLALTDAG 248
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
A I+ + L + GDGTA + VFT S+H RN+P RK S LD+ + GT DA
Sbjct: 147 AHILILDLDVHQGDGTASLMAGRGDVFTLSIHAERNFPVRKARSTLDLGLADGTGDA 203
>gi|421497632|ref|ZP_15944790.1| histone deacetylase/AcuC/AphA family protein [Aeromonas media WS]
gi|407183367|gb|EKE57266.1| histone deacetylase/AcuC/AphA family protein [Aeromonas media WS]
Length = 298
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ +AAR + G +VLIVDLDVHQ
Sbjct: 117 HHAHRDFGSGFCLFNDLVIAARACLDEGSCEQVLIVDLDVHQ 158
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 70/192 (36%), Gaps = 58/192 (30%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ + L + GDG+A + + T S+H N+P K S LD A+ G +D
Sbjct: 149 VLIVDLDVHQGDGSAALCTGSQDIITLSLHGEHNFPHHKPASHLDFALPSGMEDD----- 203
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
+L S+ + LRL P++ +
Sbjct: 204 -----AYLETLSQALN------LALRLYHPDLILYQA----------------------- 229
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+DVHQ L LS G+ RD V D AIS G+P+A V
Sbjct: 230 -------------GVDVHQ------ADELGYLSLSDAGVRQRDAMVFDCAISNGLPIAAV 270
Query: 589 TGGGYCADIDQL 600
GGGY D QL
Sbjct: 271 PGGGYRRDWRQL 282
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL + L L + PDL++Y AGVD HQ DELG L+L+D G
Sbjct: 205 YLETLSQALNLALRLYHPDLILYQAGVDVHQADELGYLSLSDAG 248
>gi|294056259|ref|YP_003549917.1| histone deacetylase superfamily protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615592|gb|ADE55747.1| histone deacetylase superfamily [Coraliomargarita akajimensis DSM
45221]
Length = 302
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHG-IVRKVLIVDLDVHQ 547
THHAFPD G GFC++ND+A+A YL HG +LIVD D HQ
Sbjct: 118 GTHHAFPDKGLGFCVLNDIAVAIEYLRAHGRCPDHILIVDTDAHQ 162
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
I+ + + G+ F DP+VFT+S+H G+NYP +K+ D D+ +
Sbjct: 153 ILIVDTDAHQGNANNAYFRDDPSVFTYSIHVGKNYPAKKEPGDCDIPL 200
>gi|398348063|ref|ZP_10532766.1| deacetylase [Leptospira broomii str. 5399]
Length = 330
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + G+G A +F DP+V+TFSMH + YP +K+ S LD+ ++ GTDD
Sbjct: 183 VLYIDLDLHQGNGNAKVFKDDPSVWTFSMHQEQLYP-KKELSSLDIPLENGTDDK----- 236
Query: 469 ALTWVTFLSQRSEKMRNN 486
T++ L++ +K R N
Sbjct: 237 --TYLKALAEGLDKTRAN 252
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A + ++ +KVL +DLD+HQ + V PS+ S
Sbjct: 151 HHSMPDRAEGFCYLNDAAVATKLYLQKYPDKKVLYIDLDLHQGNGNAKVFKDDPSVWTFS 210
Query: 562 SCVPGLY 568
LY
Sbjct: 211 MHQEQLY 217
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 23/44 (52%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L A F PDL+ Y AG DP + D LG L LT G
Sbjct: 238 YLKALAEGLDKTRANFTPDLIYYFAGADPFEDDSLGDLKLTFEG 281
>gi|444375853|ref|ZP_21175105.1| Histone deacetylase/AcuC/AphA family protein [Enterovibrio sp.
AK16]
gi|443680081|gb|ELT86729.1| Histone deacetylase/AcuC/AphA family protein [Enterovibrio sp.
AK16]
Length = 306
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 101/253 (39%), Gaps = 48/253 (18%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL--IEPQQISESIAELV 87
LPII+ Y + LP HR+P+ K+ L+++ + + + +P ++ +
Sbjct: 2 LPIIYHPIYSDFPLPEGHRYPLQKYR-----LLKEHIDEMGWPVTTFQPTRLDHQHLKRF 56
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT---------DPVPTHVIAVYLPF- 137
H +YV +G + + GF WS L R T D H +AV+L
Sbjct: 57 HDNDYVDALVSGSLPLVKMRRIGFPWSEALIQRSLTSLGGTTLTVDKAIEHGVAVHLTGG 116
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFF--------DIAAVLA----DLIHF 185
+ F + DLI A + + V D A LA D+I
Sbjct: 117 YHHSHKDFGSGFCLFNDLILAADHALSYPNIDKVLIVDCDVHHGDGTATLAQKREDIITL 176
Query: 186 MVGINTQ--------------PVSGYQAT-LKEHLPGI---LAQFKPDLVIYDAGVDPHQ 227
V + P+ T L E +P + +AQ +PD+VIYDAGVD H
Sbjct: 177 SVHCDKNFPSRKPDSDIDIPMPIGVESDTYLSEFVPVLTLAIAQHQPDMVIYDAGVDIHV 236
Query: 228 HDELGKLNLTDHG 240
DELG +N+ G
Sbjct: 237 DDELGYMNVCQRG 249
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 58/197 (29%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + K + T S+HC +N+P RK SD+D+ + +G + T+LS+
Sbjct: 160 GDGTATLAQKREDIITLSVHCDKNFPSRKPDSDIDIPMPIGVESD----------TYLSE 209
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
F+ +L L+ + H PD +
Sbjct: 210 ----------FVPVLTLA------IAQHQ--PD--------------------------M 225
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+I D V H L ++ C G+ RD V++T GIPVA V GGGY +
Sbjct: 226 VIYDAGVDIHVDD----ELGYMNVCQRGIADRDKAVMETCHQNGIPVAAVIGGGYRTEQS 281
Query: 599 QLAQRQTIIHRAATHVY 615
L + +AA +Y
Sbjct: 282 ALVPLHAELIKAAFKIY 298
>gi|389584267|dbj|GAB67000.1| histone deacetylase, partial [Plasmodium cynomolgi strain B]
Length = 393
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ + G GFC+ ND+A+A +L+ HG++ K +I+D+DVHQ
Sbjct: 219 NHHSKKNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDVDVHQ 261
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+A+I+++ + + GDGTA IF V T S+HC N+P K S +DV D DA
Sbjct: 251 KAIILDVDV--HQGDGTAEIFRNCANVKTISLHCRDNFPPVKANSTIDVEFDSFATDA 306
>gi|109897487|ref|YP_660742.1| histone deacetylase superfamily protein [Pseudoalteromonas
atlantica T6c]
gi|109699768|gb|ABG39688.1| histone deacetylase superfamily [Pseudoalteromonas atlantica T6c]
Length = 306
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L RS + L L + + HHAF + G+GFCL
Sbjct: 79 DPKAMRRIGFPWSEQLIARSLTAVGGTVLTSSLALEHGKALNLTGGYHHAFANFGSGFCL 138
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+ LAA +++ +RKVLI D DVHQ
Sbjct: 139 FNDLYLAALNVLQTPTIRKVLIFDCDVHQ 167
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + + VFT S+H +N+P RKQ SDLD + GT D
Sbjct: 166 HQGDGTAKLASNNKRVFTVSIHSEKNFPHRKQVSDLDFPLAKGTTD 211
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 560 LSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
L PG+Y RD V + G+PVA V GGGY DID L ++RAA
Sbjct: 251 LHISTPGVYARDCMVFEACEKYGVPVAAVIGGGYQRDIDALVDVHLQLYRAA 302
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L+ V Q +P ++ S V++ +Y
Sbjct: 12 VFHPIYSQLDLPFKHRFPIEKYQAIYDKLIGLGV--PQGQFHQPHALTPSQLNRVYSPDY 69
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G K + GF WS L +R T
Sbjct: 70 VNDLTRGMLDPKAMRRIGFPWSEQLIARSLT 100
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A +K L +F+PD VIYDAGVD H +D+LG L+++ G
Sbjct: 214 YLAIVKRALSQAFTEFQPDAVIYDAGVDIHINDDLGHLHISTPG 257
>gi|421523857|ref|ZP_15970484.1| histone deacetylase superfamily protein [Pseudomonas putida LS46]
gi|402752102|gb|EJX12609.1| histone deacetylase superfamily protein [Pseudomonas putida LS46]
Length = 153
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 58/198 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I P T S+HC +N+P RK SD D+ + G D +L
Sbjct: 9 HQGDGTARILHDTPEAITVSLHCEQNFPARKAQSDWDIPLPRGMGD----------TAYL 58
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+ + +LL L P++ + AG
Sbjct: 59 KVVDDALN------YLLPLYQPDLVLYD---------AG--------------------- 82
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+DVH+ +L L G+ RD VL + IPV V GGGY D
Sbjct: 83 ------VDVHKDD------ALGYLQLTDAGVATRDEAVLRHCLGRDIPVMGVIGGGYSKD 130
Query: 597 IDQLAQRQTIIHRAATHV 614
LA+R I+H +A V
Sbjct: 131 RTALARRHGILHHSAARV 148
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAG 254
+ Y + + L +L ++PDLV+YDAGVD H+ D LG L LTD G A + G
Sbjct: 55 TAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKDDALGYLQLTDAGVATRDEAVLRHCLG 114
Query: 255 VD 256
D
Sbjct: 115 RD 116
>gi|23006878|ref|ZP_00048995.1| COG0123: Deacetylases, including yeast histone deacetylase and
acetoin utilization protein [Magnetospirillum
magnetotacticum MS-1]
Length = 275
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L+ HLP ++ F PDL+ Y+AGVD H+ D LG+L L+D G
Sbjct: 202 YLAVLEAHLPALVQGFDPDLIFYNAGVDSHRDDRLGRLRLSDAG 245
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
RAL+++ L + GDGTA ++P +FT S+HC RNYP+ K DLD+ + G DA
Sbjct: 145 RALVID--LDVHQGDGTADCLAREPDLFTLSIHCERNYPYDKVPGDLDIGLPDGLGDA 200
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAGFC+ ND+A+AA L R G + + L++DLDVHQ
Sbjct: 112 GSHHARRAGGAGFCVFNDVAVAALALRREGRIARALVIDLDVHQ 155
>gi|241763690|ref|ZP_04761739.1| histone deacetylase superfamily [Acidovorax delafieldii 2AN]
gi|241367079|gb|EER61453.1| histone deacetylase superfamily [Acidovorax delafieldii 2AN]
Length = 311
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I L + G+GTA +F D +VFT S+H RN+PFRK+ DLDV + G D
Sbjct: 158 IDLDVHQGNGTAHLFQGDDSVFTLSLHGARNFPFRKEEGDLDVELPDGCAD 208
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMN 520
A R + W +++R+ + I L + + THHA+ D G+GFC+ N
Sbjct: 71 AAQREIGFPWSPAMAERARRSVGATIAACRAALREGVAGNLAGGTHHAYADRGSGFCVFN 130
Query: 521 DMALAARYL----IRHGIVRK---VLIVDLDVHQ 547
D+A+AAR + R G+ + V ++DLDVHQ
Sbjct: 131 DIAVAARLMQAERARAGVKAQPLCVAVIDLDVHQ 164
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVH 94
+ + + LP HRFPM+K+ + L D L E S+ L H Y+
Sbjct: 5 YADHFVLPLPQGHRFPMAKYGMLRDRLALDL---PGVALQEAPAASDGELALAHVPSYIQ 61
Query: 95 KFFNGKTTEKEQKVTGFEWSAGLASRVR 122
G Q+ GF WS +A R R
Sbjct: 62 AVATGTLAPAAQREIGFPWSPAMAERAR 89
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L + +F P LV+Y AG DPH D LG+L L+ G
Sbjct: 211 YLHALEQALDALDQRFAPGLVLYLAGADPHVGDRLGRLALSHDG 254
>gi|353228775|emb|CCD74946.1| putative histone deacetylase 4, 5 [Schistosoma mansoni]
Length = 1354
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC N +A+AA +L+R IV KVLI+D D+H
Sbjct: 759 HHAEPDQAMGFCYFNSVAIAALHLLRERIVSKVLILDWDIH 799
>gi|149188179|ref|ZP_01866474.1| Histone deacetylase/AcuC/AphA family protein [Vibrio shilonii AK1]
gi|148838167|gb|EDL55109.1| Histone deacetylase/AcuC/AphA family protein [Vibrio shilonii AK1]
Length = 309
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 42/254 (16%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRD--KVIDKSKQLIEPQQISESIAELV 87
+P+I+ Y + LP HR+P++K+ + + R ++ + + P ++ + V
Sbjct: 6 VPLIYHPIYSDLPLPEGHRYPINKYRLLYEEVERKYLRLAESPFVIKTPSALTVEQVQQV 65
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPFF 138
H K+YV G + GF W+ L R T T + +A++L
Sbjct: 66 HCKDYVEDLVTGSLPAARIRRIGFPWTEQLIQRTLTSAGGTCLAAQQAMEYGLAIHLSGG 125
Query: 139 LQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFF--------DIAAVLADLIHFMVGIN 190
F L + + IA V D +A LA +V ++
Sbjct: 126 YHHAHYDFGSGFCLFNDLIIAAQNAIEHGAEKVLIVDSDVHHGDGSATLAAGTDQIVTLS 185
Query: 191 ---------TQPVSGYQATLKEHLPG--ILAQFK-----------PDLVIYDAGVDPHQH 228
+P+S L LA FK PDL+IYDAGVD H+
Sbjct: 186 LHCEKNFPARKPLSDMDVPLSRGASDKEFLASFKQVVELAIRLHQPDLIIYDAGVDIHED 245
Query: 229 DELGKLNLTDHGEC 242
DELG L +T +G C
Sbjct: 246 DELGYLQVTLNGVC 259
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 58/175 (33%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDG+A + + T S+HC +N+P RK SD+DV + G D FL+
Sbjct: 168 GDGSATLAAGTDQIVTLSLHCEKNFPARKPLSDMDVPLSRGASDK----------EFLAS 217
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + +RL P++ + AG
Sbjct: 218 FKQ------VVELAIRLHQPDLIIYD---------AG----------------------- 239
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+D+H+ L L + G+ RD ++LD + GIPVA V GGGY
Sbjct: 240 ----VDIHEDDE------LGYLQVTLNGVCQRDLWMLDYCRNKGIPVACVVGGGY 284
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLT 558
HHA D G+GFCL ND+ +AA+ I HG KVLIVD DVH S + + T
Sbjct: 127 HHAHYDFGSGFCLFNDLIIAAQNAIEHG-AEKVLIVDSDVHHGDGSATLAAGT 178
>gi|221057225|ref|XP_002259750.1| histone deacetylase [Plasmodium knowlesi strain H]
gi|193809822|emb|CAQ40526.1| histone deacetylase, putative [Plasmodium knowlesi strain H]
Length = 471
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ + G GFC+ ND+A+A +L+ HG++ K +I+D+DVHQ
Sbjct: 297 NHHSKKNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDVDVHQ 339
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+A+I+++ + + GDGTA IF V T S+HC N+P K S +D+ D T D
Sbjct: 329 KAIILDVDV--HQGDGTAEIFRNCTNVKTISLHCRDNFPPVKANSTIDIEFDSFTTDG 384
>gi|94969816|ref|YP_591864.1| histone deacetylase superfamily protein [Candidatus Koribacter
versatilis Ellin345]
gi|94551866|gb|ABF41790.1| histone deacetylase superfamily [Candidatus Koribacter versatilis
Ellin345]
Length = 298
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF G+G+C+ ND+A+A YL G+ ++ ++DLDVHQ
Sbjct: 115 GTHHAFRSEGSGYCVFNDIAIAILYLRSKGLAQRAAVIDLDVHQ 158
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVID-KSKQLIEPQQISESIAELVHTKE 91
+ +T+ Y LP HRFP+SK+ L RD + + L +P+ I+ LVH
Sbjct: 5 LFYTDHYTLPLPEGHRFPISKYKLLREMLERDSLFEFVPAPLAKPEVIA-----LVHDAA 59
Query: 92 YVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
YV +F G+ + + + GF WS L R
Sbjct: 60 YVEQFVQGELSAQAMRRIGFPWSPELVKR 88
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ RA +++ L + GDGTA IF D V T S+H N+PFRKQ S +D+ ++ T D
Sbjct: 146 AQRAAVID--LDVHQGDGTAQIFQNDALVLTISVHSRANFPFRKQVSKIDIELEDATHD 202
>gi|359687906|ref|ZP_09257907.1| deacetylase [Leptospira licerasiae serovar Varillal str. MMD0835]
gi|418750973|ref|ZP_13307259.1| histone deacetylase family protein [Leptospira licerasiae str.
MMD4847]
gi|418758793|ref|ZP_13314975.1| histone deacetylase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384114695|gb|EIE00958.1| histone deacetylase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273576|gb|EJZ40896.1| histone deacetylase family protein [Leptospira licerasiae str.
MMD4847]
Length = 335
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + G+G A IF DP+V+TFSMH YP +K+ S+LDV +D G +D
Sbjct: 188 VLFIDLDLHQGNGNAKIFHGDPSVWTFSMHQEDLYP-KKEKSNLDVPLDKGANDK----- 241
Query: 469 ALTWVTFLSQRSEKMR 484
T+++ L Q EK+R
Sbjct: 242 --TYLSSLEQGLEKIR 255
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+AA+ ++ RKVL +DLD+HQ + + PS+ S
Sbjct: 156 HHSMPDRAEGFCYLNDAAIAAKLYLQKHPERKVLFIDLDLHQGNGNAKIFHGDPSVWTFS 215
Query: 562 SCVPGLY-MRDYYVLDTAISAG 582
LY ++ LD + G
Sbjct: 216 MHQEDLYPKKEKSNLDVPLDKG 237
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++L++ L I +FKPDL+ Y AG DP + D LG L LT G
Sbjct: 243 YLSSLEQGLEKIRKEFKPDLIYYFAGADPFEDDSLGDLKLTFDG 286
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 11 KQHKFELTKEQKSQLDRLVH-LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDK 69
+ + L K++ +QL +L+ L +++ +Y L P H FP K++ +N + D +
Sbjct: 20 RNGRVSLGKKRHAQLRQLLERLALVYHPEYNMDLGP-HVFPARKYAMIYNQVKEDPKL-S 77
Query: 70 SKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEK 104
S ++P + E LVHT E++ F N + T++
Sbjct: 78 SLPALQPAPVGEEELSLVHTPEFISDFMNLRYTDR 112
>gi|17537347|ref|NP_496910.1| Protein HDA-10 [Caenorhabditis elegans]
gi|5824816|emb|CAA21669.2| Protein HDA-10 [Caenorhabditis elegans]
Length = 517
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC+ N++A+AA+ I++G +KVLIVD DVH
Sbjct: 137 HHAMPDEGCGFCIFNNVAIAAKAAIQNG--QKVLIVDYDVH 175
>gi|401885828|gb|EJT49913.1| histone deacetylase clr3 [Trichosporon asahii var. asahii CBS 2479]
Length = 709
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + G+ +KVLI+D DVH
Sbjct: 191 IVRPPGHHAEPDEHMGFCFFNNVAVAAREMQKEGLAKKVLILDWDVH 237
>gi|15805859|ref|NP_294557.1| histone deacetylase/AcuC/AphA family protein [Deinococcus
radiodurans R1]
gi|6458549|gb|AAF10411.1|AE001937_7 histone deacetylase/AcuC/AphA family protein [Deinococcus
radiodurans R1]
Length = 301
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTV 559
THHAF D GFCL+ND A+ R + G+ R+V +DLDVHQ T S+ P +
Sbjct: 115 GTHHAFHDRAEGFCLVNDAAILTRIALDRGLARRVATLDLDVHQGNGTASLLTPEMAA 172
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAV---FTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ + L + G+GTA + + A FT S+H RNYPFRK+ S LD+ + G DA
Sbjct: 149 VATLDLDVHQGNGTASLLTPEMAAGTAFTLSIHGERNYPFRKERSSLDLGLGDGVTDA 206
>gi|406695694|gb|EKC98996.1| histone deacetylase clr3 [Trichosporon asahii var. asahii CBS 8904]
Length = 709
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + G+ +KVLI+D DVH
Sbjct: 191 IVRPPGHHAEPDEHMGFCFFNNVAVAAREMQKEGLAKKVLILDWDVH 237
>gi|156094402|ref|XP_001613238.1| histone deacetylase [Plasmodium vivax Sal-1]
gi|148802112|gb|EDL43511.1| histone deacetylase, putative [Plasmodium vivax]
Length = 369
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ + G GFC+ ND+A+A +L+ HG++ K +I+D+DVHQ
Sbjct: 195 NHHSKRNRGDGFCIFNDVAIAVHFLLSHGLIDKAIILDVDVHQ 237
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+A+I+++ + + GDGTA IF V T S+HC N+P K S +DV D T D
Sbjct: 227 KAIILDVDV--HQGDGTAEIFRNCANVKTISLHCRDNFPPVKAHSTIDVEFDSFTTDG 282
>gi|418702252|ref|ZP_13263163.1| histone deacetylase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410758771|gb|EKR24997.1| histone deacetylase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 271
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ G D
Sbjct: 124 ILFIDLDLHQGNGNSFIFQNDPNVFTFSMHQENLYP-KKEKSDLDISLEEGIGD 176
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ + + P++ S
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSFIFQNDPNVFTFS 151
Query: 562 SCVPGLY-MRDYYVLDTAISAGI 583
LY ++ LD ++ GI
Sbjct: 152 MHQENLYPKKEKSDLDISLEEGI 174
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEKSLREIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|82705211|ref|XP_726876.1| histone deacetylase [Plasmodium yoelii yoelii 17XNL]
gi|23482464|gb|EAA18441.1| histone deacetylase/AcuC/AphA family protein, putative [Plasmodium
yoelii yoelii]
Length = 461
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ D G GFC+ ND+A+A +L+ + IV+ V+I+D+DVHQ
Sbjct: 274 NHHSKRDKGDGFCIFNDIAIAVDFLLFYKIVKNVIILDVDVHQ 316
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 75/205 (36%), Gaps = 61/205 (29%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
+ + + GDGTA IF V T S+HC NYPF K+ S +D+ ++ +D N + +
Sbjct: 310 LDVDVHQGDGTAEIFQNHQNVKTISLHCKNNYPFLKKKSTIDIELNSYMED--NEYLKIY 367
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR 531
+ + +K N I +L AG + D L +
Sbjct: 368 QNILNNIKPQK---NSIIFYL---------------------AGVDISKDDELGLLLISD 403
Query: 532 HGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGG 591
HGI Y RDY A IP+ T+ G
Sbjct: 404 HGI---------------------------------YTRDYITYQMAFKNKIPIITLLSG 430
Query: 592 GYCADIDQ-LAQRQTIIHRAATHVY 615
GY + DQ L+++ + RAA +
Sbjct: 431 GY-NECDQILSEKHALTFRAAKAAW 454
>gi|389695472|ref|ZP_10183114.1| deacetylase, histone deacetylase/acetoin utilization protein
[Microvirga sp. WSM3557]
gi|388584278|gb|EIM24573.1| deacetylase, histone deacetylase/acetoin utilization protein
[Microvirga sp. WSM3557]
Length = 303
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI-DVGTDDA 463
ALI++ L + GDGTA +P +FTFSMH +NYP RK SDLDV + D DDA
Sbjct: 152 ALIVD--LDVHQGDGTADCLRDEPDLFTFSMHAEKNYPLRKIPSDLDVGLPDAMEDDA 207
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HH + GAGFC+ ND+A+AA+ L G +R LIVDLDVHQ
Sbjct: 118 GSHHGQRETGAGFCVFNDVAIAAKALHAEGAIRHALIVDLDVHQ 161
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+ HLP +L +PDLV ++AGVDPH+ D+LG+L L+D G
Sbjct: 208 YLEALQAHLPRLLDAIEPDLVFFNAGVDPHRDDKLGRLALSDEG 251
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 28 LVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELV 87
+ +PI+ Y+ +P HRFPM K+ + + + +P++ S + L
Sbjct: 1 MKQVPIVSHPAYQAVMPDGHRFPMRKYGRLAEIIAEKGLAPGG--FAKPEEASAELIALA 58
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
H + YV + F G + ++ G S + R R
Sbjct: 59 HDRAYVDQVFAGSVPHEIERRIGLPMSESVVRRARA 94
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 557 LTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
L L+ GL RD YV++ A S IP+ V GGGY D++ LA+R + A +
Sbjct: 242 LGRLALSDEGLRRRDDYVIEQARSRQIPLVAVIGGGYSPDVEALARRHATVFEAMA-AWG 300
Query: 617 ER 618
ER
Sbjct: 301 ER 302
>gi|359455670|ref|ZP_09244881.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20495]
gi|414071985|ref|ZP_11407941.1| histone deacetylase family protein [Pseudoalteromonas sp. Bsw20308]
gi|358047293|dbj|GAA81130.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20495]
gi|410805565|gb|EKS11575.1| histone deacetylase family protein [Pseudoalteromonas sp. Bsw20308]
Length = 297
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ D+G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 118 HHAYSDYGSGFCIFNDLAIAAAHLINTEQADTVLIFDCDVHQ 159
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + T S+HC +N+P KQ S D A+ T DA ++T L
Sbjct: 158 HQGDGTAQITQNHDQIITCSIHCEQNFPRNKQQSTYDFALPAKTTDA-------EYLTTL 210
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q + F +R+ +P+I ++ GA
Sbjct: 211 KQALD---------FCVRIHNPDIILYNA-------GA---------------------- 232
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
D+++ L +L+ + G+Y RD++VL+ IP+ GGGY +
Sbjct: 233 -------DIYEKDE------LGLLNVSLNGVYKRDFFVLNFCKQQKIPLMCSLGGGYQRN 279
Query: 597 IDQLAQRQTIIHRAA 611
+ L + +AA
Sbjct: 280 LTSLVNVHKQLFKAA 294
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 42 TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKT 101
TLP HRFP+ K+ K + + + P + + + L H + Y++ F NG
Sbjct: 13 TLPERHRFPIQKYQKLKAEI--EGLGLTPNNFTSPIKATPAQLSLCHNQTYINNFLNGTL 70
Query: 102 TEKEQKVTGFEWSAGLASRV 121
+ K K GF +S L R
Sbjct: 71 SNKAIKKMGFPYSNELVERT 90
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TLK+ L + PD+++Y+AG D ++ DELG LN++ +G
Sbjct: 206 YLTTLKQALDFCVRIHNPDIILYNAGADIYEKDELGLLNVSLNG 249
>gi|119897892|ref|YP_933105.1| histone deacetylase family protein [Azoarcus sp. BH72]
gi|119670305|emb|CAL94218.1| histone deacetylase family protein [Azoarcus sp. BH72]
Length = 305
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+ + + + + LPP HRFPM K+S+ LV V L EP +++ H
Sbjct: 1 MKLYYADHFVLPLPPGHRFPMEKYSRLRARLVASGVFGDG-DLREPAAATDAELARAHDP 59
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
YV + G+ E + GF WS + R R
Sbjct: 60 AYVARVAQGELAADEIRRIGFPWSEAMVERSR 91
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
+ GDGTA I P VFT S+H +N+PFRK SDLDV + DD G+
Sbjct: 158 HQGDGTAAILAGVPEVFTCSLHGAKNFPFRKARSDLDVEL---PDDTGD 203
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGFCLMND 521
R + W + +RS R+ G L R + E IN THHA D G+GFC+ ND
Sbjct: 76 RRIGFPWSEAMVERSR--RSAGATLAACRSALDEGCGINLAGGTHHAHRDFGSGFCVFND 133
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
A+AA + G V++V +VD DVHQ
Sbjct: 134 AAVAALAMRAEGRVQRVAVVDCDVHQ 159
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L L + ++F+P L+IY AG DP+ D LG+L L+ G
Sbjct: 206 YLAALDNALERVFSEFRPQLLIYLAGADPYAGDRLGRLALSKQG 249
>gi|237831431|ref|XP_002365013.1| histone deacetylase, putative [Toxoplasma gondii ME49]
gi|211962677|gb|EEA97872.1| histone deacetylase, putative [Toxoplasma gondii ME49]
Length = 280
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 404 SHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ R LI++ L + GDGTA IF +P V T S+HC N+PF K SD+D+ + GT D
Sbjct: 126 AERILILD--LDVHQGDGTAEIFSNEPRVKTVSIHCEDNFPFPKAQSDVDIGLPAGTGD 182
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHA D G FC+ ND+A+AA ++ GI ++LI+DLDVHQ
Sbjct: 95 GTHHAKTDSGGKFCVFNDVAVAAALALKQGIAERILILDLDVHQ 138
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E LP +L + +P L++Y AGVD H+ D G +TD G
Sbjct: 185 YLRQLNEVLPRVLLEHRPTLILYVAGVDIHEQDTFGNFQITDAG 228
>gi|331005118|ref|ZP_08328521.1| putative histone deacetylase family protein [gamma proteobacterium
IMCC1989]
gi|330421087|gb|EGG95350.1| putative histone deacetylase family protein [gamma proteobacterium
IMCC1989]
Length = 223
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 468 VALTWVTFLSQRSEKMRNNGIFL---FLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+ L W L +R+ + NG FL L+ THHA D +GFC+ ND+A+
Sbjct: 1 MGLPWSEGLVKRT-LISPNGTFLTAQLALKHGIACHLAGGTHHAHVDFASGFCIFNDLAI 59
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
A+ L+ G V K+LI D DVHQ
Sbjct: 60 TAKALLAQGKVNKILIFDCDVHQ 82
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA I + +T S+HC +N+P +K SD DV + GT D
Sbjct: 81 HQGDGTASILQHEKRAYTCSIHCEKNFPAKKALSDFDVGLPPGTSD 126
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQ 602
+D++QH L +L+ + G+ +RD VL+T+ IP+ATV GGGY D LA+
Sbjct: 155 VDIYQH------DPLGLLNITLQGIRLRDKMVLETSKKNNIPIATVIGGGYDDDRYALAK 208
Query: 603 RQTII 607
R I+
Sbjct: 209 RHAIV 213
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 213 KPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+PDL++YDAGVD +QHD LG LN+T G
Sbjct: 145 QPDLILYDAGVDIYQHDPLGLLNITLQG 172
>gi|421116476|ref|ZP_15576861.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410011936|gb|EKO70042.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
Length = 271
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ G D
Sbjct: 124 ILFIDLDLHQGNGNSFIFQNDPDVFTFSMHQENLYP-KKEKSDLDISLEEGIGD 176
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ + + P + S
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSFIFQNDPDVFTFS 151
Query: 562 SCVPGLY-MRDYYVLDTAISAGI 583
LY ++ LD ++ GI
Sbjct: 152 MHQENLYPKKEKSDLDISLEEGI 174
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FK DL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEKSLRKIESDFKSDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|392538695|ref|ZP_10285832.1| histone deacetylase superfamily protein [Pseudoalteromonas marina
mano4]
Length = 299
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ D+G+GFC+ ND+A+AA +L+ + VLI D DVHQ
Sbjct: 118 HHAYSDYGSGFCIFNDLAIAATHLLNTHKAKTVLIFDCDVHQ 159
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFP+ K+ + + + + +P + S S L H+++Y++ F G +
Sbjct: 14 LPERHRFPIQKYQRLKTEIEHLGFLPTA--FKQPAKASPSQLALCHSEQYINNFLTGNLS 71
Query: 103 EKEQKVTGFEWSAGLASRV 121
+K K GF +SA L R
Sbjct: 72 DKAIKKIGFPYSAQLVERT 90
>gi|304570490|ref|YP_001104.2| histone deacetylase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 302
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ G D
Sbjct: 155 ILFIDLDLHQGNGNSFIFQNDPDVFTFSMHQENLYP-KKEKSDLDISLEEGIGD 207
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ + + P + S
Sbjct: 123 HHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSFIFQNDPDVFTFS 182
Query: 562 SCVPGLY-MRDYYVLDTAISAGI 583
LY ++ LD ++ GI
Sbjct: 183 MHQENLYPKKEKSDLDISLEEGI 205
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 210 YLELLEKSLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 253
>gi|326669858|ref|XP_693858.4| PREDICTED: histone deacetylase 6 [Danio rerio]
Length = 1081
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
INR HHA D GFC+ N++A+AARY + V++VLIVD DVH
Sbjct: 186 INRPPGHHAQADKMNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVH 232
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR---KVLIVDLDVH 546
I R HHA D GFC N AL ARY I R +VLIVD DVH
Sbjct: 567 IVRPPGHHAEKDTACGFCFFNTAALTARYA--QSITRESLRVLIVDWDVH 614
>gi|24215622|ref|NP_713103.1| histone deacetylase [Leptospira interrogans serovar Lai str. 56601]
gi|386074823|ref|YP_005989141.1| histone deacetylase [Leptospira interrogans serovar Lai str. IPAV]
gi|24196779|gb|AAN50121.1| histone deacetylase [Leptospira interrogans serovar Lai str. 56601]
gi|353458613|gb|AER03158.1| histone deacetylase [Leptospira interrogans serovar Lai str. IPAV]
Length = 302
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ G D
Sbjct: 155 ILFIDLDLHQGNGNSFIFQNDPDVFTFSMHQENLYP-KKEKSDLDISLEEGIGD 207
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ + + P + S
Sbjct: 123 HHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSFIFQNDPDVFTFS 182
Query: 562 SCVPGLY-MRDYYVLDTAISAGI 583
LY ++ LD ++ GI
Sbjct: 183 MHQENLYPKKEKSDLDISLEEGI 205
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 210 YLELLEKSLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 253
>gi|94985520|ref|YP_604884.1| histone deacetylase superfamily protein [Deinococcus geothermalis
DSM 11300]
gi|94555801|gb|ABF45715.1| histone deacetylase superfamily [Deinococcus geothermalis DSM
11300]
Length = 306
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D GFCL+ND A+ + G+ R+V I+DLDVHQ
Sbjct: 123 GTHHAFRDRAEGFCLVNDAAILTHLALDEGLARRVAILDLDVHQ 166
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
L + G+GTA + + T S+H RNYPFRK+ S LD+ + G DA
Sbjct: 162 LDVHQGNGTAALLAGEERALTLSIHGERNYPFRKETSSLDLGLPDGVTDA 211
>gi|417760258|ref|ZP_12408284.1| histone deacetylase family protein [Leptospira interrogans str.
2002000624]
gi|417766916|ref|ZP_12414865.1| histone deacetylase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417768599|ref|ZP_12416526.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417774430|ref|ZP_12422295.1| histone deacetylase family protein [Leptospira interrogans str.
2002000621]
gi|417785462|ref|ZP_12433166.1| histone deacetylase family protein [Leptospira interrogans str.
C10069]
gi|418675465|ref|ZP_13236756.1| histone deacetylase family protein [Leptospira interrogans str.
2002000623]
gi|418679801|ref|ZP_13241058.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418693218|ref|ZP_13254281.1| histone deacetylase family protein [Leptospira interrogans str.
FPW2026]
gi|418706491|ref|ZP_13267339.1| histone deacetylase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418709210|ref|ZP_13270004.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717391|ref|ZP_13277053.1| histone deacetylase family protein [Leptospira interrogans str. UI
08452]
gi|418723865|ref|ZP_13282699.1| histone deacetylase family protein [Leptospira interrogans str. UI
12621]
gi|418729853|ref|ZP_13288395.1| histone deacetylase family protein [Leptospira interrogans str. UI
12758]
gi|421087108|ref|ZP_15547949.1| histone deacetylase family protein [Leptospira santarosai str.
HAI1594]
gi|421104756|ref|ZP_15565349.1| histone deacetylase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421120054|ref|ZP_15580368.1| histone deacetylase family protein [Leptospira interrogans str.
Brem 329]
gi|421126066|ref|ZP_15586310.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136771|ref|ZP_15596868.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|45600255|gb|AAS69741.1| histone deacetylase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|400328402|gb|EJO80634.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400350722|gb|EJP02980.1| histone deacetylase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400356876|gb|EJP13034.1| histone deacetylase family protein [Leptospira interrogans str.
FPW2026]
gi|409943825|gb|EKN89416.1| histone deacetylase family protein [Leptospira interrogans str.
2002000624]
gi|409949245|gb|EKN99222.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409951327|gb|EKO05842.1| histone deacetylase family protein [Leptospira interrogans str.
C10069]
gi|409962663|gb|EKO26397.1| histone deacetylase family protein [Leptospira interrogans str. UI
12621]
gi|410018953|gb|EKO85781.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347140|gb|EKO98059.1| histone deacetylase family protein [Leptospira interrogans str.
Brem 329]
gi|410365066|gb|EKP20461.1| histone deacetylase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430217|gb|EKP74587.1| histone deacetylase family protein [Leptospira santarosai str.
HAI1594]
gi|410436718|gb|EKP85830.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575763|gb|EKQ38780.1| histone deacetylase family protein [Leptospira interrogans str.
2002000621]
gi|410577627|gb|EKQ45497.1| histone deacetylase family protein [Leptospira interrogans str.
2002000623]
gi|410764116|gb|EKR34835.1| histone deacetylase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410770546|gb|EKR45765.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410775466|gb|EKR55458.1| histone deacetylase family protein [Leptospira interrogans str. UI
12758]
gi|410786988|gb|EKR80723.1| histone deacetylase family protein [Leptospira interrogans str. UI
08452]
gi|455666672|gb|EMF32079.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
gi|455790835|gb|EMF42682.1| histone deacetylase family protein [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456825484|gb|EMF73880.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456969210|gb|EMG10271.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
gi|456988116|gb|EMG23271.1| histone deacetylase family protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 271
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ G D
Sbjct: 124 ILFIDLDLHQGNGNSFIFQNDPDVFTFSMHQENLYP-KKEKSDLDISLEEGIGD 176
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ + + P + S
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSFIFQNDPDVFTFS 151
Query: 562 SCVPGLY-MRDYYVLDTAISAGI 583
LY ++ LD ++ GI
Sbjct: 152 MHQENLYPKKEKSDLDISLEEGI 174
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEKSLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|359449448|ref|ZP_09238941.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20480]
gi|358044758|dbj|GAA75190.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20480]
Length = 299
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ D+G+GFC+ ND+A+AA +L+ + VLI D DVHQ
Sbjct: 118 HHAYSDYGSGFCIFNDLAIAATHLLNTHKAKTVLIFDCDVHQ 159
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFP+ K+ + + + + +P + S L H+++Y++ F G +
Sbjct: 14 LPEKHRFPIQKYQRLKTEIEHLGFLPTA--FKQPAKARPSQLALCHSEQYINNFLTGNLS 71
Query: 103 EKEQKVTGFEWSAGLASRV 121
+K K GF +SA L R
Sbjct: 72 DKAIKKMGFPYSAQLVERT 90
>gi|332532183|ref|ZP_08408064.1| histone deacetylase family protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038281|gb|EGI74726.1| histone deacetylase family protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 297
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ D+G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 118 HHAYSDYGSGFCIFNDLAIAAAHLINTEQADTVLIFDCDVHQ 159
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI---EPQQISESIAELVHTKEYVHKFFNG 99
LP HRFP+ K+ L++ ++ + I EP++ ++S L H + Y++ F NG
Sbjct: 14 LPERHRFPIQKYK-----LLKTEIENLGVSAIHFQEPKKATKSQLSLCHNQTYINNFLNG 68
Query: 100 KTTEKEQKVTGFEWSAGLASRV 121
+ K K GF +S L R
Sbjct: 69 TLSNKAIKKMGFPYSNELVERT 90
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + T S+HC +N+P KQ S D A+ T DA ++ L
Sbjct: 158 HQGDGTAQITQNHDQIITCSIHCEQNFPRNKQESTYDFALPAKTTDA-------EYLATL 210
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q + F +R+ +P+I ++ GA +++ L
Sbjct: 211 EQALD---------FCVRIHNPDIILYNA-------GADIYTKDELGL------------ 242
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
DV + G+Y RD++ L+ IP+ GGGY +
Sbjct: 243 ------FDV-----------------SIDGVYKRDFFTLNFCKQHQIPLMCGLGGGYQRN 279
Query: 597 IDQLAQRQTIIHRAA 611
+ L + +AA
Sbjct: 280 LSSLINVHKQLFKAA 294
>gi|418668158|ref|ZP_13229562.1| histone deacetylase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410756191|gb|EKR17817.1| histone deacetylase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 271
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +FIF DP VFTFSMH YP +K+ SDLD++++ G D
Sbjct: 124 ILFIDLDLHQGNGNSFIFQNDPDVFTFSMHQENLYP-KKEKSDLDISLEEGIGD 176
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ + + P + S
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEYPDKKILFIDLDLHQGNGNSFIFQNDPDVFTFS 151
Query: 562 SCVPGLY-MRDYYVLDTAISAGI 583
LY ++ LD ++ GI
Sbjct: 152 MHQENLYPKKEKSDLDISLEEGI 174
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEKSLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|320156918|ref|YP_004189297.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
MO6-24/O]
gi|319932230|gb|ADV87094.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
MO6-24/O]
Length = 312
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 53/259 (20%)
Query: 28 LVHLPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISES 82
++ +P+I+ Y + LP HR+P+ K+ + + R + Q +P+ +S
Sbjct: 1 MMSIPLIYHPIYSQLPLPEGHRYPIMKYHHLYQAVCRYQQQHLEWQQAFAFYQPEALSIE 60
Query: 83 IAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAV 133
+ VH +EYV G + + GF WS L R T T H +A+
Sbjct: 61 AIKQVHQQEYVDLLTTGLLPAAKMRRIGFPWSEKLIERTLTSTAGTVLTAEKALQHGVAI 120
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ- 192
+L + L + + +A + L+ V D ++ +H G T
Sbjct: 121 HLSGGYHHAHFDYGSGFCLFNDLVMAAHKA--LEHASV--DKVLIIDSDVHHGDGTATLC 176
Query: 193 -----------------PVSGYQATLKEHLP------GILAQFK-----------PDLVI 218
P + L LP LA FK PDL+I
Sbjct: 177 QRRDDIVTLSFHCDKNFPARKPDSDLDIGLPRECGDEAFLAAFKEVVPMAIRLHQPDLII 236
Query: 219 YDAGVDPHQHDELGKLNLT 237
YDAGVD H DELG LN++
Sbjct: 237 YDAGVDIHHEDELGYLNVS 255
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +G+ + L HHA D+G+GFCL ND+ +
Sbjct: 97 ERTLTSTAGTVLT--AEKALQHGVAIHL---------SGGYHHAHFDYGSGFCLFNDLVM 145
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA + H V KVLI+D DVH
Sbjct: 146 AAHKALEHASVDKVLIIDSDVHH 168
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 65/221 (29%)
Query: 403 SSHRAL-------IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++H+AL ++ I + GDGTA + + + T S HC +N+P RK SDLD+
Sbjct: 146 AAHKALEHASVDKVLIIDSDVHHGDGTATLCQRRDDIVTLSFHCDKNFPARKPDSDLDIG 205
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAG 515
+ D FL+ E + +RL P++
Sbjct: 206 LPRECGDEA----------FLAAFKE------VVPMAIRLHQPDL--------------- 234
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVL 575
+I D V H L L+ LY RD ++
Sbjct: 235 -----------------------IIYDAGVDIHHED----ELGYLNVSTVALYQRDAFLF 267
Query: 576 DTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
A + IPVA V GGGY D + L + AA VY+
Sbjct: 268 GQAKANAIPVAAVVGGGYRTDHEALVPLHLQLLNAAFDVYR 308
>gi|428180359|gb|EKX49227.1| histone deacetylase HstD [Guillardia theta CCMP2712]
Length = 391
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
H I+ + + G+G A +F +P VFTFSMHC N+ +Q SDLDV I V D
Sbjct: 247 HIKKILIVDCDVHQGNGNAVLFQDNPFVFTFSMHCAGNFFSERQKSDLDVEIPVHCKDDD 306
Query: 465 NRTVALTWVTFLSQRSE 481
++ W+ RS+
Sbjct: 307 YMSLLHYWLPLAVDRSQ 323
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIR-HGIVRKVLIVDLDVHQ 547
THHAF D G GFC+ +D+A+AA +R + ++K+LIVD DVHQ
Sbjct: 216 GTHHAFRDRGEGFCVFSDIAVAANVALRDYEHIKKILIVDCDVHQ 260
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKV--IDKSKQLIEPQQISESI-AELV 87
L + + + Y LP HRFPM K+ VR+++ +K +++P I+ +
Sbjct: 102 LRLFYNDIYHVELPQGHRFPMHKYRA-----VRERIHHANKPNIVLQPSPIARTDDIRTT 156
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWS 114
H EY+ +F T+KE + GF WS
Sbjct: 157 HCHEYLRRFLCNMLTDKENRNIGFPWS 183
>gi|410637975|ref|ZP_11348545.1| histone deacetylase/AcuC/AphA family protein [Glaciecola lipolytica
E3]
gi|410142661|dbj|GAC15750.1| histone deacetylase/AcuC/AphA family protein [Glaciecola lipolytica
E3]
Length = 300
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF + G+GFC++ND+ L+A ++RH + +VLI D DVHQ
Sbjct: 119 HHAFANFGSGFCMVNDLYLSALQMLRHPQIDRVLIFDCDVHQ 160
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
R LI + + + GDGTA + + +P + T S+H +N+P RKQ SDLD + GT D
Sbjct: 150 RVLIFDCDV--HQGDGTAKLAENNPNIKTVSIHGEKNFPHRKQQSDLDFPLPKGTTD 204
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFP+ K+ ++ L V Q +P+ ++ + V Y+ + +GK
Sbjct: 15 LPVRHRFPIQKYQAIYSQLRELGV--PETQFYQPEPVAIDNLKQVFNPLYIQELTSGKLD 72
Query: 103 EKEQKVTGFEWSAGLASRVRT 123
K + GF WS L +R T
Sbjct: 73 AKAMRRIGFPWSEQLITRTLT 93
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 212 FKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
F+PD VIYDAGVD H++D+LG L ++ G
Sbjct: 222 FQPDAVIYDAGVDVHENDDLGHLLISTQG 250
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
G+Y+RD V + G+PVA V GGGY +ID L + +AA VY++
Sbjct: 250 GVYLRDKLVFELCERKGLPVAAVIGGGYQRNIDALVDVHLQLFQAAG-VYQK 300
>gi|339500822|ref|YP_004698857.1| histone deacetylase superfamily [Spirochaeta caldaria DSM 7334]
gi|338835171|gb|AEJ20349.1| histone deacetylase superfamily [Spirochaeta caldaria DSM 7334]
Length = 363
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D GAGFCL+ND+ +AAR L G++ + I+DLD H+
Sbjct: 169 HHARYDSGAGFCLLNDIIIAARRLKAEGLISSIWIIDLDAHK 210
>gi|117618465|ref|YP_857293.1| histone deacetylase/AcuC/AphA family protein [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117559872|gb|ABK36820.1| histone deacetylase/AcuC/AphA family protein [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 319
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 458 VGTDDAGN-RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST----HHAFPDH 512
GT DA R + W L +R+ +R+ G L R + + HHA D
Sbjct: 87 AGTLDADAIRQLGFPWSPLLMERT--LRSVGATLAASRHALEQGCGLQISGGYHHAHRDV 144
Query: 513 GAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
G+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 145 GSGFCLFNDLVIAAQVCLDEGRCEQVLIVDLDVHQ 179
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL E L L + PDL++Y AGVD H+ DELG L L+D G
Sbjct: 226 YLTTLAEALNLALRLYAPDLILYQAGVDVHKDDELGYLALSDEG 269
>gi|410941483|ref|ZP_11373280.1| histone deacetylase family protein [Leptospira noguchii str.
2006001870]
gi|410783432|gb|EKR72426.1| histone deacetylase family protein [Leptospira noguchii str.
2006001870]
Length = 271
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
I+ I L + G+G +F+F DP VFTFSMH YP +K+ SDLDV + GT+D
Sbjct: 124 ILFIDLDLHQGNGNSFVFQDDPDVFTFSMHQEDLYP-KKEKSDLDVPLKEGTED 176
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A++ + +K+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIASKLYQKEHPGKKILFIDLDLHQ 133
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L++ L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEKSLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|334132984|ref|ZP_08506739.1| hypothetical protein METUNv1_03832 [Methyloversatilis universalis
FAM5]
gi|333441894|gb|EGK69866.1| hypothetical protein METUNv1_03832 [Methyloversatilis universalis
FAM5]
Length = 300
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 407 ALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNR 466
A + + L + GDGTA I VFT S+H RN+PFRK+ S LDVA+ GT D
Sbjct: 146 ARVAIVDLDVHQGDGTADILGDADDVFTLSLHGDRNFPFRKEVSHLDVALPDGTGDQAYL 205
Query: 467 TVALTWVTFLSQRSEKMRNNGIFLFLLRLSDP 498
+ +S+R E F+ L +DP
Sbjct: 206 AALDQALATMSRRFEPQ-----FVIYLAGADP 232
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPE---IN-RFSTHHAFPDHGAGFCLMND 521
RT+ W + +RS R+ G + R + E +N THHA GAG+C+ ND
Sbjct: 74 RTIGFPWSPEMIERSR--RSAGATMSACRSALREGVSVNLAGGTHHAKHASGAGYCVFND 131
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A L + +V IVDLDVHQ
Sbjct: 132 AAVATCMLQAECGIARVAIVDLDVHQ 157
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y A L + L + +F+P VIY AG DP + D LG+L LT G
Sbjct: 204 YLAALDQALATMSRRFEPQFVIYLAGADPFEGDRLGRLKLTRAG 247
>gi|119471110|ref|ZP_01613642.1| histone deacetylase family protein [Alteromonadales bacterium TW-7]
gi|119445766|gb|EAW27048.1| histone deacetylase family protein [Alteromonadales bacterium TW-7]
Length = 299
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ D+G+GFC+ ND+A+AA +L+ + VLI D DVHQ
Sbjct: 118 HHAYSDYGSGFCIFNDLAIAATHLLSTHKAKTVLIFDCDVHQ 159
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFP+ K+ + + + + + +P + S L H++ Y++ F G +
Sbjct: 14 LPEKHRFPIQKYQRLKTEIEHLSFLPTAFK--QPAKARPSQLALCHSEHYINNFLTGNLS 71
Query: 103 EKEQKVTGFEWSAGLASRV 121
+K K GF +SA L R
Sbjct: 72 DKAIKKMGFPYSAQLVERT 90
>gi|256083850|ref|XP_002578149.1| histone deacetylase 4 5 [Schistosoma mansoni]
Length = 701
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA PD GFC N +A+AA +L+R IV KVLI+D D+H
Sbjct: 352 HHAEPDQAMGFCYFNSVAIAALHLLRERIVSKVLILDWDIHH 393
>gi|397617237|gb|EJK64344.1| hypothetical protein THAOC_14934 [Thalassiosira oceanica]
Length = 345
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLI-RHGIVRKVLIVDLDVHQ 547
THHAF D G GFC+ +D+A+AA L+ + ++++LI+DLDVHQ
Sbjct: 146 GTHHAFSDFGEGFCIFSDIAVAANVLLDKFPSIKRILIIDLDVHQ 190
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+G A +F D V TFSMHC N+ +K+ SDLDV + +G DD+
Sbjct: 181 ILIIDLDVHQGNGNAVLFQGDDRVQTFSMHCAGNFFSKKEKSDLDVELPIGCDDS 235
>gi|157278867|gb|AAI15263.1| Hdac6 protein [Danio rerio]
Length = 929
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
INR HHA D GFC+ N++A+AARY + V++VLIVD DVH
Sbjct: 34 INRPPGHHAQADKMNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVH 80
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR---KVLIVDLDVH 546
I R HHA D GFC N AL ARY I R +VLIVD DVH
Sbjct: 415 IVRPPGHHAEKDTACGFCFFNTAALTARYA--QSITRESLRVLIVDWDVH 462
>gi|334705473|ref|ZP_08521339.1| histone deacetylase/AcuC/AphA family protein [Aeromonas caviae
Ae398]
Length = 298
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA G+GFCL ND+ +AAR + G+ +VLIVDLDVHQ
Sbjct: 117 HHAHRGFGSGFCLFNDLVIAARTCLDEGLCERVLIVDLDVHQ 158
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 35 HTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVH 94
H + TLP HRFP++K+ F +++I L + S E VH YV
Sbjct: 8 HPHYSALTLPERHRFPLAKYQALF-----ERLIALDYPLAQAAPASREQIEKVHDAAYVQ 62
Query: 95 KFFNGKTTEKEQKVTGFEWSAGLASRV 121
G E + GF WS L R
Sbjct: 63 AALAGTLDEGAIRRLGFPWSPLLIERT 89
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL + L + PD ++Y AGVD H+ DELG L+L+D G
Sbjct: 205 YLETLDQALALAHRLYAPDFILYQAGVDVHRDDELGYLSLSDSG 248
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 557 LTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
L LS G+ RD V D+A+ G+P+ V GGGY D QL + AA H +
Sbjct: 239 LGYLSLSDSGVRQRDAMVFDSALRHGLPITAVPGGGYRRDWQQLIPLHLSLFEAARHRF 297
>gi|429220434|ref|YP_007182078.1| deacetylase [Deinococcus peraridilitoris DSM 19664]
gi|429131297|gb|AFZ68312.1| deacetylase, histone deacetylase/acetoin utilization protein
[Deinococcus peraridilitoris DSM 19664]
Length = 297
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF D GF L+ND+ +A +R G V +V IVDLDVHQ
Sbjct: 114 GTHHAFFDRAEGFSLLNDVVIAVTLALREGWVSRVAIVDLDVHQ 157
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 397 CTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
T ++ + + + L + G+GTA + ++ +T S+H RNYPFRK+ S LD+A+
Sbjct: 136 VTLALREGWVSRVAIVDLDVHQGNGTASLLAREARAYTLSVHGERNYPFRKERSSLDIAL 195
Query: 457 DVGTDD 462
G D
Sbjct: 196 GDGVSD 201
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 38 KYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL--IEPQQISESIAELVHTKEYVHK 95
+Y LP HRFP+ K++ + QL + + +AE VH + Y+ +
Sbjct: 11 EYTFPLPEGHRFPLYKYAGV--------ALQLQGQLPILPAPALEWELAEAVHDRGYLDR 62
Query: 96 FFNGKTTEKEQKVTGFEWSAGLASRVR 122
+ G+ + E +V G WS + R R
Sbjct: 63 WRAGEVSRDEVRVFGLPWSPEVVERAR 89
>gi|424047263|ref|ZP_17784823.1| histone deacetylase domain protein [Vibrio cholerae HENC-03]
gi|408884107|gb|EKM22861.1| histone deacetylase domain protein [Vibrio cholerae HENC-03]
Length = 306
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
RT+ T T L+ +EK +G+ + L HHA + G+GFCL ND+A+A
Sbjct: 95 RTLTSTAGTVLT--AEKALEHGVAIHL---------SGGYHHAHKNFGSGFCLFNDLAIA 143
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
A++++ H V KV+I+D DVH
Sbjct: 144 AKHMLDHEHVDKVMIIDSDVHH 165
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
+ H +M I + GDGTA I + +P + T S HC +N+P RK SDLDV + T
Sbjct: 148 LDHEHVDKVMIIDSDVHHGDGTATICESEPDIVTLSFHCDKNFPARKPDSDLDVPLSRDT 207
Query: 461 DD 462
+D
Sbjct: 208 ND 209
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 22/260 (8%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIE---PQQISESIAEL 86
LP+I+ Y + LP HR+P+ K+ + ++ + IE P +S +
Sbjct: 2 LPLIYHPVYSQLDLPNGHRYPIMKYRYLYQAVMEKLASEDWGGQIEVFQPSLLSTDDIKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF 137
VH EYV G + + GF WS L +R T T H +A++L
Sbjct: 62 VHDGEYVDLLVTGTMPAAKMRRIGFPWSEALITRTLTSTAGTVLTAEKALEHGVAIHLSG 121
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGY 197
F L + + IA L V D ++ +H G T S
Sbjct: 122 GYHHAHKNFGSGFCLFNDLAIAA--KHMLDHEHV--DKVMIIDSDVHHGDGTATICESEP 177
Query: 198 Q-ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---ISSEA 253
TL H KPD + D + +DE + + E + R + +A
Sbjct: 178 DIVTLSFHCDKNFPARKPDSDL-DVPLSRDTNDETYLMAFKEVVEMAINLHRPDMVIYDA 236
Query: 254 GVDPHQHDELGKLNLTDHGV 273
GVD H DELG N++ G+
Sbjct: 237 GVDIHVDDELGYFNVSTEGI 256
>gi|84393623|ref|ZP_00992375.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
12B01]
gi|84375764|gb|EAP92659.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
12B01]
Length = 326
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + ++ + T S HC +N+P RK SDLDV + T+D
Sbjct: 167 GDGTATLCQENDDIITLSFHCDKNFPARKPLSDLDVPLSRETEDEE-------------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
LR + ++ + + H PD +
Sbjct: 213 -------------FLRCFE-QVTKLAIAHHQPD--------------------------L 232
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L L+ G++ RD ++++ A S IP+A V GGGY
Sbjct: 233 IIYDAGIDIHQDDE------LGYLNVSTQGIFERDCFMIELAKSESIPMACVVGGGY 283
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA++ + + KVLIVD DVH
Sbjct: 125 HHAHHDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDSDVHH 166
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+A +PDL+IYDAG+D HQ DELG LN++ G
Sbjct: 225 IAHHQPDLIIYDAGIDIHQDDELGYLNVSTQG 256
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKF----SKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ S + RD + ++ +P +S +
Sbjct: 2 IPLIYHPIYSQLPLPEGHRYPINKYQLLHSAVEALMDRDPLWKSQFEMFQPTPVSVEQVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VH EYV +G + + GF WS L R
Sbjct: 62 QVHDSEYVDLLVSGNLPAAKMRRIGFPWSEQLIER 96
>gi|255081060|ref|XP_002504096.1| histone deacetylase [Micromonas sp. RCC299]
gi|226519363|gb|ACO65354.1| histone deacetylase [Micromonas sp. RCC299]
Length = 805
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIR------HGIVRKVLIVDLDVHQ 547
THHAF D G GFC+ ND+A+AA +R G +L++DLDVHQ
Sbjct: 185 THHAFRDKGEGFCVFNDIAVAATMALRKYPARFEGCAHPILVIDLDVHQ 233
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFR-KQCSDLDVAIDVGTDD 462
I+ I L + G+GTA IF+ DP V TFS H NYP++ K SD DV + GT D
Sbjct: 224 ILVIDLDVHQGNGTAKIFEDDPRVITFSAHGAGNYPWKTKMRSDHDVDVPDGTGD 278
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 22 KSQLDRLVHLPIIHT---NKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQ 78
+S+ R+ P + T + E LP HRFPM K+ T L +D K L + +
Sbjct: 55 RSEETRVARPPPLRTYYADWAEVILPEGHRFPMEKYQATRLMLEQD------KSLSDIME 108
Query: 79 ISESIAEL--VHTKEYVHKFFNGKTTEKEQKVTGF 111
+ S+ ++ VH + YV + TEKE + GF
Sbjct: 109 LKASLIDVLAVHEEGYVTRVLGCALTEKEGRAIGF 143
>gi|37679340|ref|NP_933949.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
YJ016]
gi|37198083|dbj|BAC93920.1| histone deacetylase/AcuC/AphA family protein [Vibrio vulnificus
YJ016]
Length = 312
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
RT+ T T L+ +EK +G+ + L HHA D+G+GFCL ND+ +
Sbjct: 97 ERTLTSTAGTVLT--AEKALQHGVAIHL---------SGGYHHAHFDYGSGFCLFNDLVM 145
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
AA + H V KVLI+D DVH
Sbjct: 146 AAHKALEHASVDKVLIIDSDVHH 168
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 53/259 (20%)
Query: 28 LVHLPIIHTNKYE-CTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISES 82
++ +P+I+ Y LP HR+P+ K+ + + R + Q +P+ +S
Sbjct: 1 MMSIPLIYHPIYSRLPLPEGHRYPIMKYHHLYQAVCRYQQQHLEWQQAFAFYQPEALSIE 60
Query: 83 IAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAV 133
+ VH +EYV G + + GF WS L R T T H +A+
Sbjct: 61 AIKQVHQQEYVDLLTTGLLPAAKMRRIGFPWSEQLIERTLTSTAGTVLTAEKALQHGVAI 120
Query: 134 YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQ- 192
+L + L + + +A + L+ V D ++ +H G T
Sbjct: 121 HLSGGYHHAHFDYGSGFCLFNDLVMAAHKA--LEHASV--DKVLIIDSDVHHGDGTATLC 176
Query: 193 -----------------PVSGYQATLKEHLP------GILAQFK-----------PDLVI 218
P + L LP LA FK PDL+I
Sbjct: 177 QRRDDIVTLSFHCDKNFPARKPDSDLDIGLPRECGDEAFLAAFKEVVPMAIRLHQPDLII 236
Query: 219 YDAGVDPHQHDELGKLNLT 237
YDAGVD H DELG LN++
Sbjct: 237 YDAGVDIHHEDELGYLNVS 255
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 65/221 (29%)
Query: 403 SSHRAL-------IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++H+AL ++ I + GDGTA + + + T S HC +N+P RK SDLD+
Sbjct: 146 AAHKALEHASVDKVLIIDSDVHHGDGTATLCQRRDDIVTLSFHCDKNFPARKPDSDLDIG 205
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAG 515
+ D FL+ E + +RL P++
Sbjct: 206 LPRECGDEA----------FLAAFKE------VVPMAIRLHQPDL--------------- 234
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVL 575
+I D V H L L+ LY RD ++
Sbjct: 235 -----------------------IIYDAGVDIHHED----ELGYLNVSTDALYQRDAFLF 267
Query: 576 DTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
A ++ IPVA V GGGY D + L + AA VY+
Sbjct: 268 GQAKASAIPVAAVVGGGYRTDHEALVPLHLQLLNAAFDVYR 308
>gi|71280821|ref|YP_270049.1| histone deacetylase [Colwellia psychrerythraea 34H]
gi|71146561|gb|AAZ27034.1| histone deacetylase family protein [Colwellia psychrerythraea 34H]
Length = 300
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W L +R+ I L L + + HHAF + G+GFC+
Sbjct: 73 DSKAMRRIGFPWSQQLIERTLTAVGGTIMTAQLALEYGKSLNLTGGYHHAFANFGSGFCM 132
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+ LAA ++++ + KVLI D DVHQ
Sbjct: 133 INDLYLAALTMLQNDNISKVLIFDADVHQ 161
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 416 CYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ GDGTA + + VFT S+H +N+P RKQ S+LD A+ GT D+
Sbjct: 159 VHQGDGTAKLASNNQNVFTVSIHGEKNFPHRKQVSNLDFALPKGTTDS 206
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ N LV + V + +P ++ + V+ Y
Sbjct: 6 VFHPIYSQLELPIRHRFPIEKYVGIRNALVANGV--PNNWFKKPTPVNPDNVKTVYDPTY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+H+ N + K + GF WS L R T
Sbjct: 64 IHQLINNQLDSKAMRRIGFPWSQQLIERTLT 94
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
S Y T+ L + FKPD VIYDAGVD H +D+LG L+++ G
Sbjct: 206 SLYLETVDNALNKAFSSFKPDAVIYDAGVDIHCNDDLGHLDISTQG 251
>gi|262166159|ref|ZP_06033896.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM223]
gi|262025875|gb|EEY44543.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM223]
Length = 306
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLR--LSDPEIN-RFSTHHAFPDHGAGFCLM 519
A R + W L +R+ + G L + R LSD I+ HHA D G+GFCL
Sbjct: 80 AKMRRIGFPWSEKLIERT-LLSVGGTCLTVERALLSDVAIHLSGGYHHAHADFGSGFCLF 138
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVH 546
ND+A+AA + + V KVLI+D DVH
Sbjct: 139 NDLAIAAHFALSLSGVDKVLIIDSDVH 165
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + + + PQ S+ E
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEDIVRQQAQSEEWREAFGFFTPQTAELSLVE 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+H EYV +G + + GF WS L R
Sbjct: 62 SLHDSEYVQALLDGALPAAKMRRIGFPWSEKLIER 96
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK SD+D+ T D
Sbjct: 167 GDGTATLCAECDEIITLSFHCDKNFPARKPASDMDIEFTKQTGD 210
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 213 KPDLVIYDAGVDPHQHDELGKLNLT 237
+PDL+IYDAGVD H DELG L+++
Sbjct: 229 QPDLIIYDAGVDIHSDDELGYLSIS 253
>gi|348028362|ref|YP_004871048.1| histone deacetylase family protein [Glaciecola nitratireducens
FR1064]
gi|347945705|gb|AEP29055.1| histone deacetylase family protein [Glaciecola nitratireducens
FR1064]
Length = 298
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCL 518
D R + W T L +R+ + L + + + HHAF + G+GFC+
Sbjct: 72 DPKAMRRIGFPWSTQLVERTLTAAGGTVLTSTLAIEYGKALNLTGGYHHAFGNFGSGFCM 131
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ND+ LAA +++ + KVLI D DVHQ
Sbjct: 132 VNDLYLAALNMLQSPSIDKVLIFDCDVHQ 160
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRTVALTW 472
+ GDGTA + + AV+T S+H +N+P RKQ SDLD + GT DD TV W
Sbjct: 159 HQGDGTAKLAANNSAVYTVSIHGEKNFPHRKQVSDLDFGLTKGTGDDEYLATVEQAW 215
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y AT+++ + F+PD VIYDAGVD H D+LG LN+T G
Sbjct: 207 YLATVEQAWQMAMTYFQPDAVIYDAGVDVHIDDDLGHLNITTEG 250
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ + L+R+KV ++ EP+ +S ++ Y
Sbjct: 5 VFHPIYSQLDLPVRHRFPIQKYQGIKDALLREKV--SAEFFYEPKPLSIEALSRIYDPVY 62
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+ + +G+ K + GF WS L R T
Sbjct: 63 ISQLCSGELDPKAMRRIGFPWSTQLVERTLT 93
>gi|116620212|ref|YP_822368.1| histone deacetylase superfamily protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223374|gb|ABJ82083.1| histone deacetylase superfamily [Candidatus Solibacter usitatus
Ellin6076]
Length = 305
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAFP HG GFC +ND+A+A R L ++++ ++VD DVH
Sbjct: 120 HHAFPGHGEGFCAINDVAIAVRRLQADRLIKRAMVVDCDVHH 161
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 410 MEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
M + + G+GTA IF D +VFT S+H NYP K S LD+ + G DA
Sbjct: 153 MVVDCDVHHGNGTAAIFTDDQSVFTLSIHQFNNYPSEKPLSSLDIHLTDGIGDA 206
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 98/250 (39%), Gaps = 48/250 (19%)
Query: 34 IHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYV 93
++ ++Y+ L H FP KF + L+ + ++ + P+ ++ LVH EYV
Sbjct: 7 VYHDRYDLNLG-EHVFPSQKFRWLRDRLLHTRFA-AAEDFVTPESATDDDVRLVHDPEYV 64
Query: 94 HKFFNGKTTEKE----------QKVTGFEWSAG---LASRVRTDPVPT--------HVIA 132
K G + ++ Q V F +AG LA+R+ H
Sbjct: 65 AKLRGGTLSYQDILRLEIPYSRQMVEAFWLAAGGSILAARLALQDGIGFNIGGGFHHAFP 124
Query: 133 VYLPFFLQRRPVFFDIAAVLAD-LICIAVYLTFFLQR----RPVFFDIAAVLADLIHFMV 187
+ F V + + AD LI A+ + + +F D +V IH
Sbjct: 125 GHGEGFCAINDVAIAVRRLQADRLIKRAMVVDCDVHHGNGTAAIFTDDQSVFTLSIH--- 181
Query: 188 GINTQPVSGYQATLKEHLP-GI----------------LAQFKPDLVIYDAGVDPHQHDE 230
N P ++L HL GI L FKP+L++Y AG DP+ D+
Sbjct: 182 QFNNYPSEKPLSSLDIHLTDGIGDAEYLHRLGNGYRAALTMFKPELLMYVAGADPYMEDQ 241
Query: 231 LGKLNLTDHG 240
LG L+LT G
Sbjct: 242 LGGLSLTFEG 251
>gi|302340046|ref|YP_003805252.1| histone deacetylase superfamily protein [Spirochaeta smaragdinae
DSM 11293]
gi|301637231|gb|ADK82658.1| histone deacetylase superfamily [Spirochaeta smaragdinae DSM 11293]
Length = 347
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HHA PD G GFCL+ND+ +AAR L+ V V ++D+D H+ S + PS+ LS
Sbjct: 152 HHAHPDFGHGFCLINDIMIAARRLMAERRVESVWVIDVDAHKGDGSAAIAHSDPSIRTLS 211
>gi|218708941|ref|YP_002416562.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
LGP32]
gi|218321960|emb|CAV17960.1| histone deacetylase/AcuC/AphA family protein [Vibrio splendidus
LGP32]
Length = 306
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK SDLDV + T+D
Sbjct: 167 GDGTATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLSRETEDEE-------------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
LR + ++ + + H PD +
Sbjct: 213 -------------FLRCFE-QVTKLAIAHHQPD--------------------------L 232
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L L+ G++ RD ++++ A S IP+A V GGGY
Sbjct: 233 IIYDAGIDIHQDDE------LGYLNVSTKGIFERDCFMIELAKSESIPMACVVGGGY 283
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA++ + + KVLIVD DVH
Sbjct: 125 HHAHRDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDSDVHH 166
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+A +PDL+IYDAG+D HQ DELG LN++ G
Sbjct: 225 IAHHQPDLIIYDAGIDIHQDDELGYLNVSTKG 256
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 32 PIIHTNKY-ECTLPPNHRFPMSKF----SKTFNYLVRDKVIDKSKQLIEPQQISESIAEL 86
P+I+ Y + LP HR+P++K+ S + D + ++ +P +S +
Sbjct: 3 PLIYHPIYSQLPLPEGHRYPINKYQLLHSAVEALMDSDPKWGNAFEMFQPMPVSVEQVKQ 62
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VH EYV +G + + GF WS L R
Sbjct: 63 VHDGEYVDLLVSGNLPAAKMRRIGFPWSEQLIER 96
>gi|171463998|ref|YP_001798111.1| histone deacetylase superfamily protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193536|gb|ACB44497.1| histone deacetylase superfamily [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 299
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS--THHAFPDHGAGFCLMNDM 522
R + W T + +RS + + L + + + THHA+ D G+GFC+ ND
Sbjct: 72 QREIRFPWSTLMVERSRRSAGATVAAAKTALKEGIASNLAGGTHHAYRDAGSGFCVFNDS 131
Query: 523 ALAARYLIRH-GIVRKVLIVDLDVHQ 547
A+A R L + K+ ++DLDVHQ
Sbjct: 132 AIADRTLQKEISASLKIAVIDLDVHQ 157
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I I L + G+GTA I D ++FT S+H N+PF+K+ SDLD+ + G +D
Sbjct: 148 IAVIDLDVHQGNGTASILQNDDSIFTPSIHGENNFPFKKEQSDLDLGLTDGCNDE----- 202
Query: 469 ALTWVTFLSQRSEKM--RNNGIFLFLLRLSDP 498
++ LSQ +++ R FL L +DP
Sbjct: 203 --IYLHSLSQCLDQLDARFKADFLIFLAGADP 232
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 43/268 (16%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK-QLIEPQQISESIAELVHT 89
+ +T+ + LP HRFPM K S+ +RD V ++ +L+E +++ H
Sbjct: 1 MKAFYTDHFVLPLPEGHRFPMEKHSR-----LRDLVSSQASIELVEVPPATDTQILYAHD 55
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIA 149
Y+ K +G + +EQ+ F WS + R R T A + + IA
Sbjct: 56 PSYLIKIIDGTLSAQEQREIRFPWSTLMVERSRRSAGATVAAA--------KTALKEGIA 107
Query: 150 AVLADLI---------CIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQAT 200
+ LA V+ + R + +I+A L + + ++ +G +
Sbjct: 108 SNLAGGTHHAYRDAGSGFCVFNDSAIADRTLQKEISASLKIAV---IDLDVHQGNGTASI 164
Query: 201 LKEH----LPGILAQ----FKPDLVIYDAGVDPHQHDELGKLNLTDHGECISS-SARISS 251
L+ P I + FK + D G+ +DE+ +L+ +C+ AR +
Sbjct: 165 LQNDDSIFTPSIHGENNFPFKKEQSDLDLGLTDGCNDEIYLHSLS---QCLDQLDARFKA 221
Query: 252 E-----AGVDPHQHDELGKLNLTDHGVK 274
+ AG DPH+ D LG+L ++ G++
Sbjct: 222 DFLIFLAGADPHEGDCLGRLKISKKGMR 249
>gi|301298973|gb|ADK66830.1| putative histone deacetylase superfamily protein [Amphidinium
carterae]
Length = 337
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQC-SDLDVAIDV 458
G+KS ++ + L + G+GTA IF DP VFTFS+H + YPF +C SD+D+ +
Sbjct: 188 GIKS-----MLVVDLDVHQGNGTAGIFKDDPNVFTFSVHQAKGYPFSTRCASDIDIGLHD 242
Query: 459 GTDD 462
G +D
Sbjct: 243 GCED 246
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
THHAF G GFC+ ND+A+AAR ++ +L+VDLDVHQ
Sbjct: 158 GTHHAFASSGEGFCVFNDIAVAARLAAVDYGIKSMLVVDLDVHQ 201
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HRFP+ K++ LV+++ + ++++ + S ELVH YV +G +
Sbjct: 55 LPGKHRFPIEKYAMVKEILVKEQDL----EVLDGPLATLSETELVHDAAYVQSISSGSAS 110
Query: 103 EKEQKVTGF 111
E+ +K GF
Sbjct: 111 EQTRKRVGF 119
>gi|403222692|dbj|BAM40823.1| uncharacterized protein TOT_030000085 [Theileria orientalis strain
Shintoku]
Length = 840
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC+ N++A+AAR+L R +R+V IVD DVH
Sbjct: 210 HHATPDKMMGFCIFNNVAIAARHLQRKHGLRRVAIVDWDVH 250
>gi|86148483|ref|ZP_01066772.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. MED222]
gi|85833723|gb|EAQ51892.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. MED222]
Length = 306
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK SDLDV + T+D
Sbjct: 167 GDGTATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLSRETEDEE-------------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
LR + ++ + + H PD +
Sbjct: 213 -------------FLRCFE-QVTKLAIAHHQPD--------------------------L 232
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L L+ G++ RD ++++ A S IP+A V GGGY
Sbjct: 233 IIYDAGIDIHQDDE------LGYLNVSTKGIFERDCFMIELAKSESIPMACVVGGGY 283
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA++ + + KVLIVD DVH
Sbjct: 125 HHAHRDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDSDVHH 166
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+A +PDL+IYDAG+D HQ DELG LN++ G
Sbjct: 225 IAHHQPDLIIYDAGIDIHQDDELGYLNVSTKG 256
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKF----SKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ S + D + ++ +P +S +
Sbjct: 2 IPLIYHPIYSQLPLPEGHRYPINKYLLLHSAVEALMDSDPQWGNAFEMFQPMPVSVEQVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VH EYV +G + + GF WS L R
Sbjct: 62 QVHDGEYVDLLVSGNLPAAKMRRIGFPWSEQLIER 96
>gi|410619155|ref|ZP_11330068.1| histone deacetylase family protein [Glaciecola polaris LMG 21857]
gi|410161283|dbj|GAC34206.1| histone deacetylase family protein [Glaciecola polaris LMG 21857]
Length = 299
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + +P VFT S+H +N+P RKQ SD+D A+ GT D
Sbjct: 160 HQGDGTAKLAANNPKVFTVSIHGEKNFPLRKQISDMDFALAKGTSD 205
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L+ + S Q +PQ +S + V++ EY
Sbjct: 6 VFHPIYSQLDLPHRHRFPIEKYQAIYDRLIDSGI--PSSQFHQPQALSPTQLARVYSPEY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
V+ G K + GF WSA L R T
Sbjct: 64 VNALTQGVLESKAMRRIGFPWSAQLIERSLT 94
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCLMNDMA 523
R + W L +RS + L + + + HHAF + G+GFCL ND+
Sbjct: 78 RRIGFPWSAQLIERSLTAVAGTVLTSSLAIEHGKALNLTGGYHHAFANFGSGFCLFNDLY 137
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
LAA +++ + KVLI D DVHQ
Sbjct: 138 LAALNMLQTPNIDKVLIFDCDVHQ 161
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
G+Y RD V D +PVA V GGGY DI+ L + ++RAA
Sbjct: 251 GVYARDCMVFDACAKHRVPVAAVIGGGYQRDINALVEVHIQLYRAA 296
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y ++ L F+PD VIYDAGVD H +D+LG L+++ G
Sbjct: 208 YLEVVESALNLAFTAFQPDAVIYDAGVDIHINDDLGHLHISTQG 251
>gi|168012290|ref|XP_001758835.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689972|gb|EDQ76341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 497
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 30/222 (13%)
Query: 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFR-KQCSDLDVAIDVGT 460
K + + I+ + L + G+GT+ +F+ D V TF MH NYP++ K S+ D+ GT
Sbjct: 286 KCNSQTPILVVDLDVHQGNGTSKLFENDDRVITFDMHGAGNYPWKTKMKSNYDIGFPDGT 345
Query: 461 DDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTH-HAFPDHGAGFCLM 519
D W+ L + L DP + F A + G M
Sbjct: 346 KDEEYLAKLADWLPHL----------------IELHDPSLIFFQAGVDALKEDSFGRLAM 389
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVH----QHTRSIPVPSLTVLSSCV--PGLYMRDYY 573
R L K+L +L V+ R+ + +S+C GL R+
Sbjct: 390 T------RCLSSSVTCAKILDANLYVYFPLLLKWRAYVMVLFLSMSACFFRQGLLKRNNM 443
Query: 574 VLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
V + +P+ GGGY ID + ++R+A Y
Sbjct: 444 VYSACMERNLPLVITMGGGYSRPIDASIEAHADVYRSAALRY 485
>gi|145298536|ref|YP_001141377.1| histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|418362734|ref|ZP_12963359.1| histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida 01-B526]
gi|142851308|gb|ABO89629.1| Histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356686045|gb|EHI50657.1| histone deacetylase/AcuC/AphA family protein [Aeromonas salmonicida
subsp. salmonicida 01-B526]
Length = 309
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA HG+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 117 HHAHRAHGSGFCLFNDLVIAAQTCLDEGRCDQVLIVDLDVHQ 158
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y TL + L L + PDLV+Y AGVD H DELG L L+D G
Sbjct: 205 YLDTLAQALTLALRLYNPDLVLYQAGVDVHHADELGYLALSDEG 248
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 31 LPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
L I H Y LP HRFP++K+ F L + L E Q + + + VH
Sbjct: 3 LCIFHHPYYSSLALPERHRFPLAKYQALFQTLS-----TRGYPLQETQAATRAQIDRVHD 57
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRV 121
+YV G+ + + GF WS L R
Sbjct: 58 SDYVSAALAGQLDDNAIRQLGFPWSPRLIERT 89
>gi|158521985|ref|YP_001529855.1| histone deacetylase superfamily protein [Desulfococcus oleovorans
Hxd3]
gi|158510811|gb|ABW67778.1| histone deacetylase superfamily [Desulfococcus oleovorans Hxd3]
Length = 345
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA PD GFCL+N++A+AARY + ++LIVD DVH
Sbjct: 125 HHALPDRATGFCLLNNLAIAARYARMRYNLERILIVDWDVHH 166
>gi|411008749|ref|ZP_11385078.1| histone deacetylase/AcuC/AphA family protein [Aeromonas aquariorum
AAK1]
Length = 298
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 458 VGTDDAGN-RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST----HHAFPDH 512
GT DA R + W L +R+ +R+ G L R + + HHA D
Sbjct: 66 TGTLDADAIRQLGFPWSPVLIERT--LRSVGATLAASRHALAQGCGLQISGGYHHAHRDF 123
Query: 513 GAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
G+GFCL ND+ +AA+ + G +VLIVDLDVHQ
Sbjct: 124 GSGFCLFNDLVIAAQTCLDEGRCEQVLIVDLDVHQ 158
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y +TL E L L + PDL++Y AGVD H DELG L L+D G
Sbjct: 205 YLSTLAEALNLALRLYAPDLILYQAGVDVHHADELGYLALSDEG 248
>gi|152993099|ref|YP_001358820.1| acetoin utilization protein [Sulfurovum sp. NBC37-1]
gi|151424960|dbj|BAF72463.1| acetoin utilization protein [Sulfurovum sp. NBC37-1]
Length = 307
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P+H GFCL N++A+ ARY + G +KV+I+D DVH
Sbjct: 121 HHARPEHAMGFCLFNNIAITARYAQQQG-YKKVMIIDFDVH 160
>gi|383864231|ref|XP_003707583.1| PREDICTED: histone deacetylase 6-like [Megachile rotundata]
Length = 1169
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N++++AARY I ++KVLIVD DVH
Sbjct: 666 HHAEQDAACGFCIFNNISIAARYAIEFHNIKKVLIVDWDVH 706
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+AA +R+ + +K+LIVD DVH
Sbjct: 239 HHAMKSEYCGYCFFNNVAIAAESALRNNLAKKILIVDWDVH 279
>gi|68069367|ref|XP_676595.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496364|emb|CAH97023.1| hypothetical protein PB000008.02.0 [Plasmodium berghei]
Length = 71
Score = 52.4 bits (124), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ D G GFC+ ND+A+A +L+ + IV+ V+I+D+DVHQ
Sbjct: 10 HHSKRDKGDGFCIFNDIAIAVDFLLFYKIVKSVIILDVDVHQ 51
>gi|221133465|ref|ZP_03559770.1| histone deacetylase superfamily protein [Glaciecola sp. HTCC2999]
Length = 300
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCLMNDMA 523
R + W L QR+ + L + + + HHAF D G+GFC++ND+
Sbjct: 77 RRIGFPWSEQLIQRTLTAAAGTVLTAELAMEHGKALNLTGGYHHAFADFGSGFCMVNDLY 136
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
LAA+ ++ + + VLI D DVHQ
Sbjct: 137 LAAKTMLINPDIDSVLIFDCDVHQ 160
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + KD +FT S+H +N+P RKQ S++D+ + GT D
Sbjct: 159 HQGDGTALLASKDNDIFTVSIHGEKNFPHRKQVSNIDIGLAKGTGD 204
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LP HRFP+ K+ ++ L++ V PQ + S ++ +Y
Sbjct: 5 VFHPIYSQLDLPHRHRFPIEKYQGIYDALIKLGV--DCANFHTPQALDPSYLTQIYDHDY 62
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
+H+ +G+ K + GF WS L R T T + A
Sbjct: 63 IHQLCSGQLDPKAMRRIGFPWSEQLIQRTLTAAAGTVLTA 102
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
Y T+ L Q +PD VIYDAGVD H +D+LG L++T
Sbjct: 207 YLETVDSALHLAFVQAQPDAVIYDAGVDIHINDDLGHLDIT 247
>gi|302342023|ref|YP_003806552.1| histone deacetylase superfamily protein [Desulfarculus baarsii DSM
2075]
gi|301638636|gb|ADK83958.1| histone deacetylase superfamily [Desulfarculus baarsii DSM 2075]
Length = 344
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA D GFC+ N++ LAAR+ +R G+ R+VLIVD D+H
Sbjct: 120 RPPGHHALADRAGGFCIFNNLGLAARHALRRGL-RRVLIVDWDIH 163
>gi|85712658|ref|ZP_01043704.1| Histone deacetylase/AcuC/AphA family protein [Idiomarina baltica
OS145]
gi|85693508|gb|EAQ31460.1| Histone deacetylase/AcuC/AphA family protein [Idiomarina baltica
OS145]
Length = 302
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
I H E LP HR+P+ K+ + + + + Q I+P ++ S L H+ Y
Sbjct: 6 IYHPIYSELQLPERHRYPIHKYKMLYQWALAHGA--RPDQFIQPTPMNWSQVALAHSSNY 63
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
++K + +KE + GF WS L +R T
Sbjct: 64 INKLITNQFDKKEWRKVGFPWSTQLLTRTLT 94
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEIN-RFST--HHAFPDHGAGFCLMNDM 522
R V W T L R+ G F + D I FS HHA D G+GFCL+ND+
Sbjct: 78 RKVGFPWSTQLLTRT-LTSAGGTFETVKTALDKRIAIHFSGGYHHAHHDWGSGFCLINDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAIS 580
A++A + K+LI D DVHQ T ++ + + + G + +D+ +
Sbjct: 137 AMSAVLATKAKPNLKILIFDTDVHQGDGTATLLRDHENIFTCSIHGERNFPFTKVDSDLD 196
Query: 581 AGIPVATVTGGGYCADIDQLAQRQT-------IIHRAATHVYKERGL 620
+P T T G Y + + T I++ A +Y+ L
Sbjct: 197 VALPKGT-TDGAYLDAVKHTLHKVTKDFKPDLILYDAGVDIYRRDDL 242
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 416 CYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
+ GDGTA + +FT S+H RN+PF K SDLDVA+ GT D
Sbjct: 159 VHQGDGTATLLRDHENIFTCSIHGERNFPFTKVDSDLDVALPKGTTDGA 207
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 560 LSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
L + G++ RDY+VLD A I +A V GGGY ++ +L + RA+ V+ +
Sbjct: 245 LDVSIEGIFSRDYFVLDYAKQNNISLAAVIGGGYQRNLSRLILAHAQLLRASHQVWSD 302
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y +K L + FKPDL++YDAGVD ++ D+LG L+++ G
Sbjct: 206 GAYLDAVKHTLHKVTKDFKPDLILYDAGVDIYRRDDLGHLDVSIEG 251
>gi|237653134|ref|YP_002889448.1| histone deacetylase [Thauera sp. MZ1T]
gi|237624381|gb|ACR01071.1| Histone deacetylase [Thauera sp. MZ1T]
Length = 305
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
+ GDGTA I P VFT S+H +N+PFRKQ SDLDV + DD G+
Sbjct: 162 HQGDGTATILADTPEVFTCSLHGAKNFPFRKQASDLDVEL---PDDTGD 207
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+ + + + + LP HRFPM K+S+ +RD + L P S++ H
Sbjct: 1 MKLYYADHFVLPLPAGHRFPMEKYSR-LRARLRDSGLFADDDLRVPAAASDAEILRAHDA 59
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
Y+ + G E + GF WSA + R R
Sbjct: 60 GYLQRVAGGTLDAAEVRRIGFPWSAAMVERSR 91
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 459 GTDDAGN-RTVALTWVTFLSQRSEKMRNNGIFLFLLRLS-DPEINRF-------STHHAF 509
GT DA R + W + +RS R+ G L R + D E THHA
Sbjct: 68 GTLDAAEVRRIGFPWSAAMVERSR--RSAGATLAACRSALDREGGAACAANLAGGTHHAH 125
Query: 510 PDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
D G+GFC+ ND A+AA + G ++ IVD DVHQ
Sbjct: 126 RDFGSGFCVFNDAAIAALAMRAEGRAGRIAIVDCDVHQ 163
>gi|118594918|ref|ZP_01552265.1| histone deacetylase family protein [Methylophilales bacterium
HTCC2181]
gi|118440696|gb|EAV47323.1| histone deacetylase family protein [Methylophilales bacterium
HTCC2181]
Length = 346
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G GFC+ N++A+AARYL + + ++LIVD DVH
Sbjct: 156 HHASSDKGMGFCIYNNIAIAARYLQQQFGLERILIVDFDVH 196
>gi|194763445|ref|XP_001963843.1| GF21044 [Drosophila ananassae]
gi|190618768|gb|EDV34292.1| GF21044 [Drosophila ananassae]
Length = 1142
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA PD GFC+ N++A+AA+Y IR +++VLIVD DVH
Sbjct: 670 RPPGHHAEPDQPHGFCIFNNVAIAAQYAIRDYGLQRVLIVDWDVH 714
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 21/122 (17%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI----P 553
I R HHA G+C N++ALAA++ + ++++LI+D DVH Q T+ P
Sbjct: 235 IIRPPGHHAMKAEFNGYCFFNNVALAAQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 294
Query: 554 VPSLTVL---------SSCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADID 598
TVL S P L+ DY+ + + G +P+ + +T G Y A
Sbjct: 295 RQVNTVLYFSIHRFEYGSFWPHLHESDYHAIGSGPGTGYTFNVPLNSTGMTNGDYLAIFQ 354
Query: 599 QL 600
QL
Sbjct: 355 QL 356
>gi|308812688|ref|XP_003083651.1| Histone deacetylase superfamily (ISS) [Ostreococcus tauri]
gi|116055532|emb|CAL58200.1| Histone deacetylase superfamily (ISS) [Ostreococcus tauri]
Length = 749
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIV---RKVLIVDLDVHQ 547
THHA+ D G GFC+ ND+ A R + R ++ RK+L++DLDVHQ
Sbjct: 560 GTHHAYRDRGEGFCVFNDIGTAIRVVQRDELLPRDRKILVIDLDVHQ 606
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + G+GTA +F+ D V TFSMH +NYP + + DVG D N +
Sbjct: 597 ILVIDLDVHQGNGTAKMFEHDQQVVTFSMHGEKNYPIKTRERSTH---DVGLPDDANDEM 653
Query: 469 ALT----WVTFLSQRSE 481
L W+ L Q E
Sbjct: 654 FLEQLDHWLPRLWQEYE 670
>gi|94499634|ref|ZP_01306171.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Bermanella marisrubri]
gi|94428388|gb|EAT13361.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Oceanobacter sp. RED65]
Length = 308
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 478 QRSEKMRNNGIFLFLLRLSDPEINRFST-----HHAFPDHGAGFCLMNDMALAARYLIRH 532
+ +E+ +GI LS N F HHA P GFC +N++ALAA++ +
Sbjct: 93 EATEEAAGSGIQAVESILSGKHQNAFCAIRPPGHHAEPKKTKGFCFVNNIALAAQHALNQ 152
Query: 533 GIVRKVLIVDLDVHQHTRSIPV----PSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+ +VLI D DVHQ +I + V++S Y ++++ IPV
Sbjct: 153 AGINRVLIFDFDVHQANGTIEAFRGRDDVVVVTSFQHPYYPNSHWLVKEENIINIPVEEH 212
Query: 589 TG 590
TG
Sbjct: 213 TG 214
>gi|195432308|ref|XP_002064165.1| GK20022 [Drosophila willistoni]
gi|194160250|gb|EDW75151.1| GK20022 [Drosophila willistoni]
Length = 1136
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC+ N++A+AA+Y IR +++VLIVD DVH
Sbjct: 678 HHAEPDQPHGFCIFNNVAIAAQYAIRDFGLQRVLIVDWDVH 718
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSL 557
I R HHA G+C N++ALAA++ + ++++LI+D DVH Q T+
Sbjct: 239 IIRPPGHHAMKAEFNGYCFFNNVALAAKHALDKHKLQRILIIDYDVHHGQGTQRFFYDDP 298
Query: 558 TVL---------SSCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
VL S P L+ D++ + T G + +T G Y A QL
Sbjct: 299 RVLYFSIHRFEYGSFWPNLHESDFHAIGTGAGQGYNFNVPLNATGMTNGDYLAIFQQL 356
>gi|359436411|ref|ZP_09226516.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20311]
gi|358028866|dbj|GAA62765.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20311]
Length = 267
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ ++G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 88 HHAYSNYGSGFCIFNDLAIAAAHLITTEQADTVLIFDCDVHQ 129
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + + + S+HC +N+P +KQ S+ D + T DA ++T L
Sbjct: 128 HQGDGTAQITQQHEQIVSCSIHCEQNFPRQKQLSNYDFGLPANTTDA-------EYLTTL 180
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q E +RL P+I ++ GA +++ L
Sbjct: 181 EQALE---------LCVRLHQPDIILYNA-------GADIYTKDELGL------------ 212
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
DV + G+Y RD+ VL+ IP+ GGGY +
Sbjct: 213 ------FDVS-----------------LAGVYKRDFAVLNFCKQRNIPLMCALGGGYQRN 249
Query: 597 IDQLAQRQTIIHRAA 611
I+ L + +AA
Sbjct: 250 INNLVSVHKQLFKAA 264
>gi|307212499|gb|EFN88230.1| Histone deacetylase 6 [Harpegnathos saltator]
Length = 1136
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N++A+AA+Y I+ V+KVLIVD DVH
Sbjct: 614 HHAEEDAACGFCIFNNVAVAAKYAIQFHHVKKVLIVDWDVH 654
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++ALAA + K+LIVD DVH
Sbjct: 194 HHAMKSEYCGYCFFNNVALAAEKALTSNWASKILIVDWDVH 234
>gi|195130223|ref|XP_002009552.1| GI15174 [Drosophila mojavensis]
gi|193908002|gb|EDW06869.1| GI15174 [Drosophila mojavensis]
Length = 1137
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC+ N++A+AA+Y IR + ++LIVD DVH
Sbjct: 644 HHAEPDQPHGFCIFNNIAIAAQYAIREFGLERILIVDWDVH 684
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSL 557
I R HHA G+C N++ALAA++ + ++++LI+D DVH Q T+
Sbjct: 208 IIRPPGHHAMKSEFNGYCYFNNVALAAQHALEAHQLQRILIIDYDVHHGQGTQRFFYNDS 267
Query: 558 TVL---------SSCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
VL S P L DY+ + + G +P+ T + G Y A QL
Sbjct: 268 RVLYFSIHRYEHGSFWPNLQESDYHAIGSGPGTGYNFNVPLNTKGMGNGDYLAIFQQL 325
>gi|257094856|ref|YP_003168497.1| histone deacetylase superfamily [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047380|gb|ACV36568.1| histone deacetylase superfamily [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 306
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS----THHAFPDHGAGFCLMND 521
R + W + +RS R+ G + R++ E + THHA DHG GFC+ ND
Sbjct: 79 RRIGFPWSEGMVERSR--RSAGATIAACRIALQETCAINLAGGTHHAHADHGEGFCVFND 136
Query: 522 MALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLS 561
A+AAR L G V+++ +VD DVHQ T SI +V +
Sbjct: 137 AAVAARVLRAEGCVQRLAVVDCDVHQGNGTASICAEDASVFT 178
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ G+GTA I +D +VFTFS+H +N+PF K SDLDV + GT D
Sbjct: 161 HQGNGTASICAEDASVFTFSIHAQKNFPFAKAISDLDVGLPDGTGD 206
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
+ + +T+ + LPP HRFPM K+++ L R P S H
Sbjct: 4 VKLFYTDTFVLPLPPGHRFPMEKYARLRERL-RASGQFADADFRSPMAASTEQLCHAHVA 62
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
EYV + G + E + GF WS G+ R R
Sbjct: 63 EYVARVCRGDLSAAEIRRIGFPWSEGMVERSR 94
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L L + A+ +PDLVIY AG DP+ D LG+L LT G
Sbjct: 209 YLQQLAWALDQVFARARPDLVIYLAGADPYCDDRLGRLALTFDG 252
>gi|451975732|ref|ZP_21926914.1| histone deacetylase family, putative [Vibrio alginolyticus E0666]
gi|451930317|gb|EMD78029.1| histone deacetylase family, putative [Vibrio alginolyticus E0666]
Length = 307
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 399 SGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDV 458
++ H ++ I + GDGTA + D +P + T S HC +N+P RK SDLDV +
Sbjct: 146 QALEVEHVDKVLIIDSDVHHGDGTATLCDDEPDIITLSFHCDKNFPARKPQSDLDVPLVR 205
Query: 459 GTDD 462
GT D
Sbjct: 206 GTGD 209
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK---QLIEPQQISESIAEL 86
LP I+ Y + LP HR+P+ K+ + ++ D K Q +P+ ++ +
Sbjct: 2 LPFIYHPVYSQLELPEGHRYPIMKYQYLYESILVHMEKDDWKEHVQFFQPEALTVEEVKR 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
VH ++YV NG + + GF WS L +R T T + A
Sbjct: 62 VHDQKYVDLLVNGNMPAAKMRRIGFPWSESLITRTLTSAAGTALTA 107
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + G+GFCL ND+ +AAR + V KVLI+D DVH
Sbjct: 124 HHAHKEFGSGFCLFNDLVIAARQALEVEHVDKVLIIDSDVHH 165
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 213 KPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+PDLVIYDAGVD HQ DELG +++ G
Sbjct: 228 RPDLVIYDAGVDIHQDDELGYFDVSTQG 255
>gi|320352964|ref|YP_004194303.1| histone deacetylase superfamily protein [Desulfobulbus propionicus
DSM 2032]
gi|320121466|gb|ADW17012.1| histone deacetylase superfamily [Desulfobulbus propionicus DSM
2032]
Length = 343
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEIN------RFSTHHAFPDHGAGFCLMNDMAL 524
T++ S + + G R+ D EI+ R HHA P G GFC+ N++A+
Sbjct: 86 TYLMEQSLYTAALAAGGCLELADRILDGEIDYGFALIRPPGHHAEPGRGMGFCVFNNVAI 145
Query: 525 AARYLIRHGIVRKVLIVDLDVH 546
A+YL R +R++LIVD DVH
Sbjct: 146 TAQYLRRVYGLRRILIVDFDVH 167
>gi|70946093|ref|XP_742797.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521975|emb|CAH81316.1| hypothetical protein PC108209.00.0 [Plasmodium chabaudi chabaudi]
Length = 64
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ D G GFC+ ND+A+A +L+ + IV+ V+I+D+DVHQ
Sbjct: 10 HHSKRDKGDGFCIFNDIAIAIDFLLLYKIVQNVIILDVDVHQ 51
>gi|406898250|gb|EKD41915.1| histone deacetylase family protein [uncultured bacterium]
Length = 315
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA DH GFC+ N++A+AA+YLI+ ++++I+D DVH
Sbjct: 130 HHAESDHAMGFCIFNNVAIAAQYLIKQKNKKRIVIMDFDVHH 171
>gi|328781356|ref|XP_001121726.2| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6 [Apis
mellifera]
Length = 1129
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N++A+AA+Y I V++VLIVD DVH
Sbjct: 665 HHATEDAACGFCIFNNVAIAAKYAIEFHHVKRVLIVDWDVH 705
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+AA ++ + + K+LIVD DVH
Sbjct: 238 HHAMKSEYCGYCFFNNVAIAAEKVLCNNLASKILIVDWDVH 278
>gi|51246214|ref|YP_066098.1| hypothetical protein DP2362 [Desulfotalea psychrophila LSv54]
gi|50877251|emb|CAG37091.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 341
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P G GFC++N++A+ A+YL H + ++LI+D DVH
Sbjct: 125 HHAEPGRGMGFCILNNIAITAKYLQTHYNLSRILIIDFDVH 165
>gi|392554229|ref|ZP_10301366.1| histone deacetylase/AcuC/AphA family protein [Pseudoalteromonas
undina NCIMB 2128]
Length = 295
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ ++G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 116 HHAYSNYGSGFCIFNDLAIAAAHLISTEQADTVLIFDCDVHQ 157
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + + + S+HC +N+P +KQ S+ D + T DA ++T L
Sbjct: 156 HQGDGTAQITQQHEQIISCSIHCEQNFPRQKQYSNYDFGLPANTTDA-------EYLTTL 208
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q E +RL P I ++ GA +++ L
Sbjct: 209 DQALE---------LCVRLHQPYIILYNA-------GADIYTKDELGL------------ 240
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
DV + G+Y RD+ VL+ IP+ GGGY +
Sbjct: 241 ------FDV-----------------SLAGVYKRDFAVLNFCKQRNIPLMCALGGGYQRN 277
Query: 597 IDQLAQRQTIIHRAA 611
I+ L + +AA
Sbjct: 278 INNLVSVHKQLFKAA 292
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 42 TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKT 101
TLP HRFP+ K+ + + + R + I P +++ L H+ +Y+ F NG
Sbjct: 13 TLPERHRFPIKKYQQLKHEVERLGYT----RFISPSPATKAQLSLCHSSDYIADFLNGSL 68
Query: 102 TEKEQKVTGFEWSAGLASRV 121
T+K K GF S L R
Sbjct: 69 TDKAVKKMGFPHSYKLVERT 88
>gi|183220191|ref|YP_001838187.1| putative deacetylase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189910311|ref|YP_001961866.1| histone deacetylase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167774987|gb|ABZ93288.1| Histone deacetylase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167778613|gb|ABZ96911.1| Putative deacetylase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 311
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFCL N++A+ A+YL GI +++LI+D DVH
Sbjct: 125 HHAESDHAMGFCLFNNIAITAKYLQSQGI-KRILILDWDVH 164
>gi|58264444|ref|XP_569378.1| histone deacetylase clr3 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110099|ref|XP_776260.1| hypothetical protein CNBC6490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258932|gb|EAL21613.1| hypothetical protein CNBC6490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225610|gb|AAW42071.1| histone deacetylase clr3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 737
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA P+ GFC N++A+A R + R G+ +KVLI+D DVH
Sbjct: 197 IVRPPGHHAEPNEHMGFCFFNNVAVATREMQREGLAKKVLILDWDVH 243
>gi|407791878|ref|ZP_11138955.1| histone deacetylase superfamily protein [Gallaecimonas xiamenensis
3-C-1]
gi|407198705|gb|EKE68734.1| histone deacetylase superfamily protein [Gallaecimonas xiamenensis
3-C-1]
Length = 299
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 460 TDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLM 519
+D RT+A T L +E ++G+ L L HHA G GFC+
Sbjct: 83 SDQLIERTLAANKGTLLC--AELALDHGLALHL---------SGGYHHAHYAQGGGFCIF 131
Query: 520 NDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND+A+AA+ L+ G R+VL+ D DVHQ
Sbjct: 132 NDLAMAAQTLVDQGKARRVLVFDCDVHQ 159
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 109/298 (36%), Gaps = 73/298 (24%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL-IEPQQISESIAELVHT 89
LP+++ Y LP NHRFP+ K+ + L D + EP + + H
Sbjct: 2 LPLVYHPSYSFPLPANHRFPVGKYLRLKEGLAEDLAAVAHRYFSAEPDPLYPAH---WHC 58
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL----- 135
+YV F + + GF S L R T H +A++L
Sbjct: 59 PDYVQGFLSQSLPATMARRIGFPMSDQLIERTLAANKGTLLCAELALDHGLALHLSGGYH 118
Query: 136 -PFFLQ-----------------------RRPVFFD--------IAAVLA---DLICIAV 160
+ Q RR + FD A +LA D I ++V
Sbjct: 119 HAHYAQGGGFCIFNDLAMAAQTLVDQGKARRVLVFDCDVHQGDGTATMLAQHPDCISVSV 178
Query: 161 YLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYD 220
+ R D+ L + G+ QP Y + + L L ++PDLV+YD
Sbjct: 179 HAQRNYPARKPDSDLDVALPE------GLTDQP---YLDAVTDALDLALRYYQPDLVLYD 229
Query: 221 AGVDPHQHDELGKLNLTDHG----------ECISSSARISSEAGVDPHQHDELGKLNL 268
AGVD H DELG ++ G C++ +++ G +Q D G +NL
Sbjct: 230 AGVDIHADDELGHFKVSSQGLLHRDRLVLSRCLAKDIPVAAVIG-GGYQRDLQGVVNL 286
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
+ GDGTA + + P + S+H RNYP RK SDLDVA+ G D
Sbjct: 158 HQGDGTATMLAQHPDCISVSVHAQRNYPARKPDSDLDVALPEGLTD 203
>gi|380012501|ref|XP_003690319.1| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6-like [Apis
florea]
Length = 1179
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N++A+AA+Y I V++VLIVD DVH
Sbjct: 680 HHATEDAACGFCIFNNVAIAAKYAIEFHHVKRVLIVDWDVH 720
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+AA ++ + + K+LIVD DVH
Sbjct: 234 HHAMKSEYCGYCFFNNVAIAAEKVLCNNLASKILIVDWDVH 274
>gi|408792422|ref|ZP_11204032.1| histone deacetylase family protein [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408463832|gb|EKJ87557.1| histone deacetylase family protein [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 278
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 36/167 (21%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGN 465
ALI+++ L + G+G ++IF D VFTFSMH G YP +K+ S+LDV ++ T D
Sbjct: 131 NALIIDLDL--HQGNGNSYIFQYDDKVFTFSMHQGNLYP-KKEVSNLDVNLEPNTKDDEY 187
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALA 525
T T T L+Q ++ +N ++ + +DP + D G ++ L
Sbjct: 188 LT---TLETSLNQIRKEFDSN--IIYYVAGADP----------YEDDSLGELKVSMKGLK 232
Query: 526 ARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDY 572
R DL V + S+ VP + L+ G Y RD+
Sbjct: 233 ER--------------DLMVRKFAESLNVPCVVTLA----GGYARDF 261
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+FPD GFC +ND+A+A R LI+DLD+HQ
Sbjct: 100 HHSFPDKAEGFCYLNDVAIAIRKQKETNPELNALIIDLDLHQ 141
>gi|398342481|ref|ZP_10527184.1| deacetylase [Leptospira inadai serovar Lyme str. 10]
Length = 330
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
++ I L + G+G A +F DPAV+TFSMH + YP +K+ S LD+ ++ GT D
Sbjct: 183 VLYIDLDLHQGNGNAKVFKDDPAVWTFSMHQEQLYP-KKERSSLDIPLENGTGDK----- 236
Query: 469 ALTWVTFLSQRSEKMRNN 486
T++ L + +K+R N
Sbjct: 237 --TYLKALVEGLDKVRAN 252
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + ++ +KVL +DLD+HQ
Sbjct: 151 HHSMPDRAEGFCYLNDAAVATKLYLQKYPDKKVLYIDLDLHQ 192
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L + A F PDL+ Y AG DP + D LG L LT G
Sbjct: 238 YLKALVEGLDKVRANFMPDLIYYFAGADPFEDDSLGDLKLTFEG 281
>gi|148980163|ref|ZP_01815914.1| deacetylase [Vibrionales bacterium SWAT-3]
gi|145961381|gb|EDK26688.1| deacetylase [Vibrionales bacterium SWAT-3]
Length = 306
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK SDLDV + T+D
Sbjct: 167 GDGTATLCQESDEIITLSFHCDKNFPARKPLSDLDVPLSRETEDEE-------------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
LR + ++ + + H PD +
Sbjct: 213 -------------FLRCFE-QVTKLAIAHHQPD--------------------------L 232
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L L+ G++ RD ++++ A S IP+A V GGGY
Sbjct: 233 IIYDAGVDIHQDDE------LGYLNVSEQGIFERDCFMINLAKSESIPMACVVGGGY 283
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ LAA++ + V KVLIVD DVH
Sbjct: 125 HHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLIVDSDVH 165
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 103/266 (38%), Gaps = 33/266 (12%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKF----SKTFNYLVRDKVIDKSKQLIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ S + D + ++ EP+ +S +
Sbjct: 2 IPLIYHPIYSQLPLPEGHRYPINKYQLLHSAVEALMDSDPLWKNMFEVFEPKPVSVEQVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR---------VRTDPVPTHVIAVYLP 136
VH +YV +G + + GF WS L R + D +A++L
Sbjct: 62 QVHDSDYVDLLVSGSLPAAKMRRIGFPWSEQLIERTLYSSGGTCLAADMAIESGLAIHLS 121
Query: 137 -FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVS 195
+ F +L DL+ A + F Q V V +D+ H S
Sbjct: 122 GGYHHAHHDFGSGFCLLNDLVLAAKHALTFEQVDKVLI----VDSDVHHGDGTATLCQES 177
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE--------LGKLNLTDHGECISSSA 247
TL H KP L D + DE + KL + H
Sbjct: 178 DEIITLSFHCDKNFPARKP-LSDLDVPLSRETEDEEFLRCFEQVTKLAIAHH-----QPD 231
Query: 248 RISSEAGVDPHQHDELGKLNLTDHGV 273
I +AGVD HQ DELG LN+++ G+
Sbjct: 232 LIIYDAGVDIHQDDELGYLNVSEQGI 257
>gi|198470023|ref|XP_001355195.2| GA19406 [Drosophila pseudoobscura pseudoobscura]
gi|198147145|gb|EAL32252.2| GA19406 [Drosophila pseudoobscura pseudoobscura]
Length = 1095
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA PD GFC+ N++A+AA+Y IR +++VLI+D DVH
Sbjct: 635 RPPGHHAEPDQPHGFCIFNNVAIAAQYAIREFGLKRVLILDWDVH 679
>gi|327279554|ref|XP_003224521.1| PREDICTED: histone deacetylase 7-like [Anolis carolinensis]
Length = 931
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA P GFC N +A+AAR L + G + K+LIVD DVH
Sbjct: 647 RPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKINKILIVDWDVH 691
>gi|70941957|ref|XP_741203.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519433|emb|CAH84752.1| hypothetical protein PC301218.00.0 [Plasmodium chabaudi chabaudi]
Length = 71
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ D G GFC+ ND+A+A +L+ + IV+ V+I+D+DVHQ
Sbjct: 10 HHSKRDKGDGFCIFNDIAIAIDFLLLYKIVQNVIILDVDVHQ 51
>gi|405123003|gb|AFR97768.1| histone deacetylase clr3 [Cryptococcus neoformans var. grubii H99]
Length = 731
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA P+ GFC N++A+A R + R G+ +KVLI+D DVH
Sbjct: 187 IVRPPGHHAEPNEHMGFCFFNNVAVATREMQREGLAKKVLILDWDVH 233
>gi|195163866|ref|XP_002022770.1| GL14573 [Drosophila persimilis]
gi|194104793|gb|EDW26836.1| GL14573 [Drosophila persimilis]
Length = 1095
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA PD GFC+ N++A+AA+Y IR +++VLI+D DVH
Sbjct: 635 RPPGHHAEPDQPHGFCIFNNVAIAAQYAIREFGLKRVLILDWDVH 679
>gi|321253099|ref|XP_003192629.1| histone deacetylase clr3 [Cryptococcus gattii WM276]
gi|317459098|gb|ADV20842.1| histone deacetylase clr3, putative [Cryptococcus gattii WM276]
Length = 734
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA P+ GFC N++A+A R + R G+ +KVLI+D DVH
Sbjct: 185 IVRPPGHHAEPNEHMGFCFFNNVAVATREMQREGLAKKVLILDWDVH 231
>gi|322785610|gb|EFZ12265.1| hypothetical protein SINV_07643 [Solenopsis invicta]
Length = 1170
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D+ GFC+ N++A+AA Y ++ +V++VLI+D DVH
Sbjct: 661 HHAEKDNACGFCIFNNVAVAAMYAVQFHLVKRVLIIDWDVH 701
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++ALAA + G+ ++LIVD DVH
Sbjct: 234 HHAMKSEYCGYCFFNNVALAAEKALSSGLANRILIVDWDVH 274
>gi|381151608|ref|ZP_09863477.1| deacetylase, histone deacetylase/acetoin utilization protein
[Methylomicrobium album BG8]
gi|380883580|gb|EIC29457.1| deacetylase, histone deacetylase/acetoin utilization protein
[Methylomicrobium album BG8]
Length = 270
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA PD GFCL N++A+AA + +H +R++ IVD DVH
Sbjct: 122 RPPGHHAEPDRAMGFCLFNNVAIAAEHARKHPSIRRIAIVDFDVHH 167
>gi|456063892|ref|YP_007502862.1| histone deacetylase superfamily protein [beta proteobacterium CB]
gi|455441189|gb|AGG34127.1| histone deacetylase superfamily protein [beta proteobacterium CB]
Length = 279
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 412 IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALT 471
I L + G+GTA I D ++FT S+H N+PF K+ SDLD+ + G D
Sbjct: 131 IDLDVHQGNGTASILQNDQSIFTLSIHGENNFPFTKERSDLDIGLPNGCQDD-------D 183
Query: 472 WVTFLSQRSEKMRN-NGIFLFLLRLSDP-EINRFSTHHAFPDHGAGFCLMNDMALAARYL 529
+++ L+Q EK+ F+ L +DP E +R D G C + +Y+
Sbjct: 184 YLSALNQGLEKLDVFKPDFIIYLAGADPHEGDRLGKLSISKD---GMCQRD------QYV 234
Query: 530 IRHGIVRKV 538
++G+ R++
Sbjct: 235 FQYGLDRQI 243
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVR-KVLIVDLDVHQ 547
THHA+ D G+GFC+ ND A+ A+ L + + KV I+DLDVHQ
Sbjct: 93 GTHHAYRDKGSGFCIFNDSAITAKALQKEIHQKLKVAIIDLDVHQ 137
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 212 FKPDLVIYDAGVDPHQHDELGKLNLTDHGEC 242
FKPD +IY AG DPH+ D LGKL+++ G C
Sbjct: 198 FKPDFIIYLAGADPHEGDRLGKLSISKDGMC 228
>gi|384917228|ref|ZP_10017357.1| Deacetylase family enzyme [Methylacidiphilum fumariolicum SolV]
gi|384525376|emb|CCG93230.1| Deacetylase family enzyme [Methylacidiphilum fumariolicum SolV]
Length = 314
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA P+ GFC+ N + +AARY I++ ++++LI+D DVH
Sbjct: 122 RPPGHHALPNSAMGFCIFNTVGIAARYAIKNYGIKRILILDWDVHH 167
>gi|195060356|ref|XP_001995788.1| GH17575 [Drosophila grimshawi]
gi|193896574|gb|EDV95440.1| GH17575 [Drosophila grimshawi]
Length = 1098
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + ++LIVD DVH
Sbjct: 650 HHAESDHPHGFCIFNNVAIAAQYAIREYQLERILIVDWDVH 690
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA G+C N++ALAA++ I ++++LI+D DVH
Sbjct: 204 IIRPPGHHAMKSEFNGYCYFNNVALAAQHAIDAYQLQRILIIDYDVH 250
>gi|381393718|ref|ZP_09919437.1| histone deacetylase/AcuC/AphA family protein [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330612|dbj|GAB54570.1| histone deacetylase/AcuC/AphA family protein [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 299
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D G+GFC+ ND+ L+A ++++ + KVL D DVHQ
Sbjct: 119 HHAFSDFGSGFCVFNDIVLSATHMLKQEGIDKVLTFDCDVHQ 160
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVG-TDD 462
+ GDGTA + + A++T S+HC +N+P RKQ SDLD ++ G TDD
Sbjct: 159 HQGDGTALLASGNDAIYTVSLHCEKNFPARKQHSDLDFPLERGMTDD 205
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 33 IIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEY 92
+ H + LPP HRFP+ K+ + L+ + V + + + P+ I ++ H+ +Y
Sbjct: 5 VFHPIYSQLPLPPKHRFPIEKYQGIKDQLLANGVSENA--FLTPEAIPLEDLKVAHSAKY 62
Query: 93 VHKFFNGKTTEKEQKVTGFEWSAGLASR 120
V F +G ++K + G WS R
Sbjct: 63 VDSFIDGTISQKAIRRLGMPWSQQFVKR 90
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 557 LTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611
L L+ G++ RD V D G+PVA V GGGY +ID L ++RAA
Sbjct: 241 LGYLNITTKGVFERDKLVFDACKRHGVPVAAVIGGGYQRNIDDLVNVHLQLYRAA 295
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 214 PDLVIYDAGVDPHQHDELGKLNLTDHG 240
PD VIYDAGVD H+ D+LG LN+T G
Sbjct: 224 PDAVIYDAGVDIHESDDLGYLNITTKG 250
>gi|196229464|ref|ZP_03128329.1| histone deacetylase superfamily [Chthoniobacter flavus Ellin428]
gi|196226696|gb|EDY21201.1| histone deacetylase superfamily [Chthoniobacter flavus Ellin428]
Length = 313
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G GFC++N++A+AAR+ R + +VLIVD DVH
Sbjct: 124 HHASTDRGMGFCVLNNIAIAARHAQRRHGIERVLIVDWDVH 164
>gi|268551831|ref|XP_002633897.1| Hypothetical protein CBG19959 [Caenorhabditis briggsae]
Length = 935
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----P 555
I R HHA +GFC+ N++A+AA+Y RH ++VLI+D DVH + + P
Sbjct: 541 IVRPPGHHASASKSSGFCIFNNVAVAAKYAQRHHRAKRVLILDWDVHHGNGTQEIFYEDP 600
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID-QLAQRQTII 607
S+ +S + P +DY+ + + G V G D++ Q+A ++ I+
Sbjct: 601 SVMYMSIHRHDKGNFYPIGEPKDYFDVGESAGEGTSVNVPFSGAPMGDLEYQMAFQRVIM 660
>gi|251797783|ref|YP_003012514.1| histone deacetylase [Paenibacillus sp. JDR-2]
gi|247545409|gb|ACT02428.1| Histone deacetylase [Paenibacillus sp. JDR-2]
Length = 391
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAFPD GAGFC+ ND A+A +Y IR +VL +D DVH
Sbjct: 136 HHAFPDRGAGFCVYNDAAVAIQY-IRQTYGARVLYIDTDVHH 176
>gi|326936481|ref|XP_003214282.1| PREDICTED: histone deacetylase 7-like [Meleagris gallopavo]
Length = 931
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA P GFC N +A+AAR L + G + K+LIVD DVH
Sbjct: 644 RPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLNKILIVDWDVH 688
>gi|195566858|ref|XP_002106992.1| HDAC6 [Drosophila simulans]
gi|194204389|gb|EDX17965.1| HDAC6 [Drosophila simulans]
Length = 777
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 309 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 349
>gi|71026484|ref|XP_762912.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349864|gb|EAN30629.1| hypothetical protein TP03_0788 [Theileria parva]
Length = 900
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC+ N++A+AARYL +++V IVD DVH
Sbjct: 225 HHATPDKMMGFCIYNNVAIAARYLQHKFGLKRVAIVDWDVH 265
>gi|262170966|ref|ZP_06038644.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus
MB-451]
gi|261892042|gb|EEY38028.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus
MB-451]
Length = 306
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVH 165
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + + + PQ S+ E
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEDIVRQQAQSEEWRDAFGFFTPQIAELSLVE 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+H EYV +G + + GF WS L R
Sbjct: 62 SLHDSEYVQALLDGTLPAAKMRRIGFPWSEKLIER 96
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK SD+D+ T D
Sbjct: 167 GDGTATLCAERDEIITLSFHCDKNFPARKPASDMDIEFTKQTGD 210
>gi|343517076|ref|ZP_08754091.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. N418]
gi|342794575|gb|EGU30338.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. N418]
Length = 305
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + D + T S HC +N+P RK SD+D+
Sbjct: 165 GDGTATMCSDDERIITLSFHCDKNFPARKPSSDIDIGF---------------------- 202
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + ++N + + IN + PD V
Sbjct: 203 -ARETQDNEFLEHFYSVVETTINLYR-----PD--------------------------V 230
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L + GLY RD ++L A IP+A V GGGY
Sbjct: 231 IIYDAGVDIHQDDE------LGYFNISTQGLYQRDRFILALAQQRNIPIACVVGGGY 281
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 21/259 (8%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI--EPQQISESIAELV 87
+P+I+ Y + +LP HR+P+ K+ ++ L + + + + +P+ ++++
Sbjct: 2 IPVIYHPIYSQLSLPEGHRYPIDKYRLLYHALTDKMQGEWANRFMVFQPKPLTQATISQY 61
Query: 88 HTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------IAVYLPFF 138
H +Y+ NG+ + + GF WS L R T T + IA++L
Sbjct: 62 HCSDYIDALVNGRLPAVKMRRIGFPWSEALIERTFTSAGGTWLTTQLAIEQGIAIHLSGG 121
Query: 139 LQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQ 198
F L + + ++ L++ D ++ +H G T +
Sbjct: 122 YHHAHYDFGSGFCLINDLVLSAKQALTLEK----IDRVLIVDSDVHHGDGTATMCSDDER 177
Query: 199 -ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---ISSEAG 254
TL H KP I D G D + E + R I +AG
Sbjct: 178 IITLSFHCDKNFPARKPSSDI-DIGFARETQDNEFLEHFYSVVETTINLYRPDVIIYDAG 236
Query: 255 VDPHQHDELGKLNLTDHGV 273
VD HQ DELG N++ G+
Sbjct: 237 VDIHQDDELGYFNISTQGL 255
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ L+A+ + + +VLIVD DVH
Sbjct: 123 HHAHYDFGSGFCLINDLVLSAKQALTLEKIDRVLIVDSDVH 163
>gi|258625470|ref|ZP_05720363.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM603]
gi|258582274|gb|EEW07130.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM603]
Length = 306
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVH 165
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + + + PQ S+ +
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEDIVRQQAQSEEWRDVFGFFTPQIAELSLVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+H EYV +G + + GF WS L R
Sbjct: 62 SLHDSEYVQALLDGALPAAKMRRIGFPWSEKLIER 96
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK SD+D+ T D
Sbjct: 167 GDGTATLCAERDEIITLSFHCDKNFPARKPASDMDIEFTKQTGD 210
>gi|258621190|ref|ZP_05716224.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM573]
gi|424807274|ref|ZP_18232682.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus SX-4]
gi|258586578|gb|EEW11293.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus VM573]
gi|342325216|gb|EGU20996.1| histone deacetylase/AcuC/AphA family protein [Vibrio mimicus SX-4]
Length = 306
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + + + I PQ + S+
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQQEHSEEWRTAFNFIAPQMAALSLVM 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VH +YV G + + GF WS L R
Sbjct: 62 SVHDSDYVRALLEGTLPAAKMRRIGFPWSEKLIER 96
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 58/175 (33%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK SD+D+ T GN FLS
Sbjct: 167 GDGTATLCAERDEIITLSFHCDKNFPARKPASDMDIEF---TKQTGNE-------EFLST 216
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
++ + + L P++
Sbjct: 217 FTQ------VVEMAVNLHQPDL-------------------------------------- 232
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
++ D V H+ L LS + RD ++L A + IP+A V GGGY
Sbjct: 233 ILYDAGVDIHSDD----ELGYLSISQAAIARRDCFMLSLAKQSNIPIACVIGGGY 283
>gi|221632213|ref|YP_002521434.1| histone deacetylase family protein [Thermomicrobium roseum DSM
5159]
gi|221156465|gb|ACM05592.1| histone deacetylase family protein [Thermomicrobium roseum DSM
5159]
Length = 319
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P+ G GFCL N++A+AA+Y + +R++ I+D DVH
Sbjct: 126 HHAEPERGMGFCLFNNIAVAAQYALERYGLRRIAIIDWDVH 166
>gi|410621570|ref|ZP_11332416.1| histone deacetylase family protein [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410158808|dbj|GAC27790.1| histone deacetylase family protein [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 298
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 466 RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFST--HHAFPDHGAGFCLMNDMA 523
R + W L +R+ + L L + + HHAF + G+GFC++ND+
Sbjct: 77 RRIGFPWSKQLIERTLTAAAGTVLTSSLALEHGKALNLTGGYHHAFANFGSGFCMVNDLY 136
Query: 524 LAARYLIRHGIVRKVLIVDLDVHQ 547
LAA +++ + KVL+ D DVHQ
Sbjct: 137 LAALNMLQSKNIDKVLVFDCDVHQ 160
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT-DDAGNRTVALTW 472
+ GDGTA + + AV+T S+H +N+P RKQ SDLD + GT DD TV W
Sbjct: 159 HQGDGTAKLAANNNAVYTVSIHGEKNFPHRKQISDLDFGLAKGTGDDEFLATVEQAW 215
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ AT+++ + F+PD VIYDAGVD H D+LG LN+T G
Sbjct: 207 FLATVEQAWQMAITYFQPDAVIYDAGVDVHIDDDLGHLNITTEG 250
>gi|386764457|ref|NP_001245681.1| HDAC6, isoform F [Drosophila melanogaster]
gi|383293407|gb|AFH07395.1| HDAC6, isoform F [Drosophila melanogaster]
Length = 1022
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 666 RPPGHHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L+ DY+ + + G +P+ +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|255982634|gb|ACU45748.1| AT13940p [Drosophila melanogaster]
Length = 1022
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 666 RPPGHHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L+ DY+ + + G +P+ +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|52548847|gb|AAU82696.1| acetoin utilization protein [uncultured archaeon GZfos19A5]
Length = 351
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P+ G GFC+ N++A+AA +L R + +VLI D DVH
Sbjct: 129 HHATPNKGMGFCIFNNIAIAAEHLKREYGINRVLIADWDVHH 170
>gi|52550445|gb|AAU84294.1| acetoin utilization protein [uncultured archaeon GZfos9D1]
Length = 351
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P+ G GFC+ N++A+AA +L R + +VLI D DVH
Sbjct: 129 HHATPNKGMGFCIFNNIAIAAEHLKREYGINRVLIADWDVHH 170
>gi|24642146|ref|NP_727843.1| HDAC6, isoform C [Drosophila melanogaster]
gi|22833161|gb|AAN09662.1| HDAC6, isoform C [Drosophila melanogaster]
gi|225579769|gb|ACN94051.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579778|gb|ACN94059.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579796|gb|ACN94075.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579805|gb|ACN94083.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579841|gb|ACN94115.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579859|gb|ACN94131.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579868|gb|ACN94139.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579877|gb|ACN94147.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579886|gb|ACN94155.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579895|gb|ACN94163.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579904|gb|ACN94171.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579922|gb|ACN94187.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579931|gb|ACN94195.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579949|gb|ACN94211.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579967|gb|ACN94227.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|225579940|gb|ACN94203.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFQHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|52352410|gb|AAU43699.1| acetoin utilization protein [uncultured archaeon GZfos26D8]
Length = 351
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P+ G GFC+ N++A+AA +L R + +VLI D DVH
Sbjct: 129 HHATPNKGMGFCIFNNIAIAAEHLKREYGINRVLIADWDVHH 170
>gi|225579814|gb|ACN94091.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579823|gb|ACN94099.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|384875350|gb|AFI26269.1| HDAC6 [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|225579850|gb|ACN94123.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + +++VLI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRVLIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|24642144|ref|NP_727842.1| HDAC6, isoform B [Drosophila melanogaster]
gi|22833160|gb|AAN09661.1| HDAC6, isoform B [Drosophila melanogaster]
gi|225579768|gb|ACN94050.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579777|gb|ACN94058.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579795|gb|ACN94074.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579804|gb|ACN94082.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579840|gb|ACN94114.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579858|gb|ACN94130.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579867|gb|ACN94138.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579876|gb|ACN94146.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579885|gb|ACN94154.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579894|gb|ACN94162.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579903|gb|ACN94170.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579921|gb|ACN94186.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579930|gb|ACN94194.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579948|gb|ACN94210.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579966|gb|ACN94226.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579936|gb|ACN94199.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFQHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|225579849|gb|ACN94122.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + +++VLI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRVLIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579832|gb|ACN94107.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|225579786|gb|ACN94066.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579760|gb|ACN94043.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579913|gb|ACN94179.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
gi|225579958|gb|ACN94219.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|24642142|ref|NP_573017.2| HDAC6, isoform A [Drosophila melanogaster]
gi|22833159|gb|AAF48443.2| HDAC6, isoform A [Drosophila melanogaster]
gi|28557633|gb|AAO45222.1| LD43531p [Drosophila melanogaster]
gi|220947430|gb|ACL86258.1| HDAC6-PA [synthetic construct]
gi|225579765|gb|ACN94047.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579774|gb|ACN94055.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579792|gb|ACN94071.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579801|gb|ACN94079.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579837|gb|ACN94111.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579855|gb|ACN94127.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579864|gb|ACN94135.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579873|gb|ACN94143.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579882|gb|ACN94151.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579891|gb|ACN94159.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579900|gb|ACN94167.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579918|gb|ACN94183.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579927|gb|ACN94191.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579947|gb|ACN94209.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579963|gb|ACN94223.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|225579939|gb|ACN94202.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 297 RVVYFSIHRFQHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579846|gb|ACN94119.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + +++VLI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRVLIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|225579810|gb|ACN94087.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579819|gb|ACN94095.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|225579759|gb|ACN94042.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579912|gb|ACN94178.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579957|gb|ACN94218.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L+ DY+ + + G +P+ +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579758|gb|ACN94041.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579909|gb|ACN94175.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
gi|225579954|gb|ACN94215.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|384875348|gb|AFI26267.1| HDAC6 [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579828|gb|ACN94103.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|225579813|gb|ACN94090.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
gi|225579822|gb|ACN94098.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579787|gb|ACN94067.1| histone deacetylase 6 isoform C [Drosophila melanogaster]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 673 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 713
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 240 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 299
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 300 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 357
>gi|384875349|gb|AFI26268.1| HDAC6 [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|88602220|ref|YP_502398.1| histone deacetylase superfamily protein [Methanospirillum hungatei
JF-1]
gi|88187682|gb|ABD40679.1| histone deacetylase superfamily [Methanospirillum hungatei JF-1]
Length = 364
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
++R HHA HGAGFC +N++A+ RYL R G+ R+++++D D H
Sbjct: 119 LSRPPGHHAGRSHGAGFCYLNNVAIMVRYLQRRGL-RRIMVLDWDAHH 165
>gi|297797055|ref|XP_002866412.1| hypothetical protein ARALYDRAFT_919345 [Arabidopsis lyrata subsp.
lyrata]
gi|297312247|gb|EFH42671.1| hypothetical protein ARALYDRAFT_919345 [Arabidopsis lyrata subsp.
lyrata]
Length = 660
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVHQHTRSIPV-- 554
I R HHA D GFCL N++A+AA YL+ V+K+LIVD DVH + +
Sbjct: 151 IVRPPGHHAEADEAMGFCLFNNIAVAASYLLNQRPDLGVKKILIVDWDVHHGNGTQKMFW 210
Query: 555 --PSLTVLS-------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQT 605
P + S S P DY ++ G + G C D D LA
Sbjct: 211 EDPRVLFFSVHRHEYGSFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDH 270
Query: 606 II 607
I+
Sbjct: 271 IL 272
>gi|225579831|gb|ACN94106.1| histone deacetylase 6 isoform B [Drosophila melanogaster]
Length = 1135
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 670 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 710
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 237 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 296
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L+ DY+ + + G +P+ +T G Y A QL
Sbjct: 297 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 354
>gi|225579783|gb|ACN94063.1| histone deacetylase 6 isoform A [Drosophila melanogaster]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L+ DY+ + + G +P+ +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|317123806|ref|YP_004097918.1| histone deacetylase [Intrasporangium calvum DSM 43043]
gi|315587894|gb|ADU47191.1| Histone deacetylase [Intrasporangium calvum DSM 43043]
Length = 398
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA PD +GFC+ ND+A+ R+L+ HG +V VD+DVH
Sbjct: 133 HHAMPDRASGFCIYNDIAVGIRWLLDHG-AERVAYVDVDVHH 173
>gi|71897189|ref|NP_001026573.1| histone deacetylase 7 [Gallus gallus]
gi|60098543|emb|CAH65102.1| hypothetical protein RCJMB04_3k14 [Gallus gallus]
Length = 946
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA P GFC N +A+AAR L + G + K+LIVD DVH
Sbjct: 659 RPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLSKILIVDWDVH 703
>gi|386764455|ref|NP_001245680.1| HDAC6, isoform E [Drosophila melanogaster]
gi|383293406|gb|AFH07394.1| HDAC6, isoform E [Drosophila melanogaster]
Length = 1108
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 643 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 683
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 210 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 269
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 270 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 327
>gi|85001508|ref|XP_955470.1| histone deacetylase family protein [Theileria annulata strain
Ankara]
gi|65303616|emb|CAI75994.1| histone deacetylase family protein, putative [Theileria annulata]
Length = 878
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC+ N++A+AARYL +++V IVD DVH
Sbjct: 217 HHATPDKMMGFCIYNNVAIAARYLQHKFGLKRVAIVDWDVH 257
>gi|324504135|gb|ADY41786.1| Histone deacetylase 6 [Ascaris suum]
Length = 572
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 478 QRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRK 537
+R E+ RN + R HHA P AGFC+ N++A+AA+Y + + +
Sbjct: 257 ERKERARNAFALI-----------RPPGHHATPSQAAGFCIFNNVAIAAKYAMEKYGLER 305
Query: 538 VLIVDLDVH 546
+LIVD DVH
Sbjct: 306 ILIVDWDVH 314
>gi|442616414|ref|NP_001259569.1| HDAC6, isoform G [Drosophila melanogaster]
gi|440216793|gb|AGB95411.1| HDAC6, isoform G [Drosophila melanogaster]
Length = 1179
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 663 HHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 703
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 230 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 289
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L+ DY+ + + G +P+ +T G Y A QL
Sbjct: 290 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 347
>gi|156742869|ref|YP_001432998.1| histone deacetylase superfamily protein [Roseiflexus castenholzii
DSM 13941]
gi|156234197|gb|ABU58980.1| histone deacetylase superfamily [Roseiflexus castenholzii DSM
13941]
Length = 345
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P GFCL N++A+AARY I H + +V IVD DVH
Sbjct: 123 HHATPTESMGFCLFNNVAVAARYAIDHLSIGRVAIVDFDVHH 164
>gi|281360899|ref|NP_001162760.1| HDAC6, isoform D [Drosophila melanogaster]
gi|4455131|gb|AAD21090.1| histone deacetylase HDA2 [Drosophila melanogaster]
gi|272506112|gb|ACZ95295.1| HDAC6, isoform D [Drosophila melanogaster]
gi|384875351|gb|AFI26270.1| HDAC6 [Drosophila melanogaster]
Length = 883
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 584 RPPGHHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 628
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALA ++ + ++++LI+D DVH Q T+ P
Sbjct: 155 IIRPPGHHAMKAEYNGYCFFNNVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 214
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 215 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 272
>gi|410450935|ref|ZP_11304962.1| histone deacetylase family protein [Leptospira sp. Fiocruz LV3954]
gi|418746281|ref|ZP_13302611.1| histone deacetylase family protein [Leptospira santarosai str.
CBC379]
gi|418753911|ref|ZP_13310147.1| histone deacetylase family protein [Leptospira santarosai str.
MOR084]
gi|421110535|ref|ZP_15571030.1| histone deacetylase family protein [Leptospira santarosai str. JET]
gi|409965752|gb|EKO33613.1| histone deacetylase family protein [Leptospira santarosai str.
MOR084]
gi|410015247|gb|EKO77352.1| histone deacetylase family protein [Leptospira sp. Fiocruz LV3954]
gi|410792828|gb|EKR90753.1| histone deacetylase family protein [Leptospira santarosai str.
CBC379]
gi|410804131|gb|EKS10254.1| histone deacetylase family protein [Leptospira santarosai str. JET]
gi|456876398|gb|EMF91500.1| histone deacetylase family protein [Leptospira santarosai str.
ST188]
Length = 270
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 386 DRAQSPHCRPGCTSGMKSSHRAL----IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGR 441
DRA+ +K RA I+ I L + G+G + +F +DP VFTFSMH
Sbjct: 97 DRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQGNGNSVVFQEDPDVFTFSMHQEN 156
Query: 442 NYPFRKQCSDLDVAIDVGTDDA 463
YP +K+ S LD+ ++ GT+D
Sbjct: 157 LYP-KKEKSGLDIPLEEGTNDG 177
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQ 133
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLVESLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 222
>gi|392573396|gb|EIW66536.1| hypothetical protein TREMEDRAFT_34982 [Tremella mesenterica DSM
1558]
Length = 732
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+A + + R G+ +KVLI+D DVH
Sbjct: 196 IVRPPGHHAEPDEHMGFCFYNNVAVATKEVQRLGLAKKVLILDWDVH 242
>gi|451946585|ref|YP_007467180.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfocapsa sulfexigens DSM 10523]
gi|451905933|gb|AGF77527.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfocapsa sulfexigens DSM 10523]
Length = 342
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 474 TFLSQRS---EKMRNNGIFLFLLRLSDPEIN------RFSTHHAFPDHGAGFCLMNDMAL 524
T+L + S ++ G F R+ + +I+ R HHA P G GFC+ N++AL
Sbjct: 85 TYLMEESLPTARLAAGGCFALANRIMEGDIDYGFGLIRPPGHHATPGRGMGFCIFNNVAL 144
Query: 525 AARYLIRHGIVRKVLIVDLDVHQ 547
A YL +R++LI+D DVH
Sbjct: 145 TAEYLRNTYGLRRILILDFDVHH 167
>gi|343509659|ref|ZP_08746924.1| histone deacetylase/AcuC/AphA family protein [Vibrio scophthalmi
LMG 19158]
gi|342804010|gb|EGU39349.1| histone deacetylase/AcuC/AphA family protein [Vibrio scophthalmi
LMG 19158]
Length = 260
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 62/177 (35%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + D + T S HC +N+P RK SD+D+
Sbjct: 120 GDGTATMCSDDERIITLSFHCDKNFPARKPNSDIDIGF---------------------- 157
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
+ + ++N + + IN + PD V
Sbjct: 158 -ARETQDNEFLEHFYSVVETAINLYQ-----PD--------------------------V 185
Query: 539 LIVD--LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
+I D +D+HQ L + GLY RD ++L A IP+A V GGGY
Sbjct: 186 IIYDAGVDIHQDDE------LGYFNISTQGLYQRDRFILALAQQRNIPIACVVGGGY 236
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ L+A+ + + +VLIVD DVH
Sbjct: 78 HHAHYDFGSGFCLINDLVLSAKQALTLEKIDRVLIVDSDVH 118
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 212 FKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
++PD++IYDAGVD HQ DELG N++ G
Sbjct: 181 YQPDVIIYDAGVDIHQDDELGYFNISTQG 209
>gi|195356210|ref|XP_002044573.1| GM20078 [Drosophila sechellia]
gi|194132204|gb|EDW53826.1| GM20078 [Drosophila sechellia]
Length = 619
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA DH GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 147 RPPGHHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 191
>gi|325108524|ref|YP_004269592.1| histone deacetylase superfamily protein [Planctomyces brasiliensis
DSM 5305]
gi|324968792|gb|ADY59570.1| histone deacetylase superfamily [Planctomyces brasiliensis DSM
5305]
Length = 322
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ R HHA GFCL+N+ A+AA+Y I H + +VLIVD DVH
Sbjct: 128 VTRPPGHHAVAGSAMGFCLLNNAAIAAQYAIDHFKLNRVLIVDWDVH 174
>gi|448339399|ref|ZP_21528424.1| histone deacetylase superfamily protein [Natrinema pallidum DSM
3751]
gi|445620067|gb|ELY73575.1| histone deacetylase superfamily protein [Natrinema pallidum DSM
3751]
Length = 333
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 459 GTDDAGNRTVALTWVTFLSQR--SEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGF 516
G DA V TW L+ +E + R + R HHA D GF
Sbjct: 72 GNWDADTVAVESTWEASLASAGLAEWAAKTALDRRTERFPPFSLGRPPGHHAVEDDAMGF 131
Query: 517 CLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
C N++A+AAR +I G +V I+D DVH
Sbjct: 132 CFFNNVAIAARSVIDAGTAERVAIIDWDVH 161
>gi|422002976|ref|ZP_16350210.1| deacetylase [Leptospira santarosai serovar Shermani str. LT 821]
gi|417258446|gb|EKT87834.1| deacetylase [Leptospira santarosai serovar Shermani str. LT 821]
Length = 292
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 386 DRAQSPHCRPGCTSGMKSSHRAL----IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGR 441
DRA+ +K RA I+ I L + G+G + +F +DP VFTFSMH
Sbjct: 119 DRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQGNGNSVVFQEDPDVFTFSMHQEN 178
Query: 442 NYPFRKQCSDLDVAIDVGTDDA 463
YP +K+ S LD+ ++ GT+D
Sbjct: 179 LYP-KKEKSGLDIPLEEGTNDG 199
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 114 HHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQ 155
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 201 YLELLVESLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 244
>gi|381209320|ref|ZP_09916391.1| histone deacetylase superfamily protein [Lentibacillus sp. Grbi]
Length = 368
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P+ G GFCL N++A+AA+Y + ++++LI+D DVH
Sbjct: 140 HHAEPEEGMGFCLFNNVAIAAKYARQKYGLKRILILDWDVH 180
>gi|350400444|ref|XP_003485837.1| PREDICTED: histone deacetylase 6-like [Bombus impatiens]
Length = 1173
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + GFC+ N++A+AARY + V++VLIVD DVH
Sbjct: 676 HHAAENTACGFCIFNNIAVAARYAVEFHHVKRVLIVDWDVH 716
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+AA ++ + K+LIVD D+H
Sbjct: 249 HHAMKSEYCGYCFFNNVAIAAEKVLSSNLASKILIVDWDIH 289
>gi|183220176|ref|YP_001838172.1| putative arginase/deacetylase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910296|ref|YP_001961851.1| deacetylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774972|gb|ABZ93273.1| Deacetylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778598|gb|ABZ96896.1| Putative arginase/deacetylase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 299
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 52/254 (20%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L +I+ + Y LP H FP K+S +N + RD V S ++ P+++ ++ ELVHTK
Sbjct: 6 LALIYHSSYNLELP-GHVFPAHKYSHLYNRVKRDPVY-ASWDILLPKKVDDADLELVHTK 63
Query: 91 EYVHKFFNGKTTEKEQK---------VTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQR 141
EY+ F+ + T + V F + G + + ++ H A +
Sbjct: 64 EYLDDLFSYEHTPRTMYSELPLNRSIVESFMYGVG-GTVLASELSDKHQFAFNMGGGYHH 122
Query: 142 RPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADL-IHFMVG------------ 188
F D A L +A+ + + +P DI A++ DL +H G
Sbjct: 123 S--FPDRAEGFCYLNDVAIAVKKQKETKP---DINALIIDLDLHQGNGNSYIFQYDDKVF 177
Query: 189 -------------------INTQPVSG---YQATLKEHLPGILAQFKPDLVIYDAGVDPH 226
+N +P + Y + L+ L I F +++ Y AG DP+
Sbjct: 178 TFSMHQGNLYPKKEISNLDVNLEPNTKDDEYLSILETSLNQIRKDFDSNIIYYVAGADPY 237
Query: 227 QHDELGKLNLTDHG 240
+ D LG+L ++ G
Sbjct: 238 EDDSLGELKISMKG 251
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 406 RALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
ALI+++ L + G+G ++IF D VFTFSMH G YP +K+ S+LDV ++ T D
Sbjct: 152 NALIIDLDL--HQGNGNSYIFQYDDKVFTFSMHQGNLYP-KKEISNLDVNLEPNTKD 205
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+FPD GFC +ND+A+A + LI+DLD+HQ
Sbjct: 121 HHSFPDRAEGFCYLNDVAIAVKKQKETKPDINALIIDLDLHQ 162
>gi|359683254|ref|ZP_09253255.1| deacetylase [Leptospira santarosai str. 2000030832]
Length = 292
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 386 DRAQSPHCRPGCTSGMKSSHRAL----IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGR 441
DRA+ +K RA I+ I L + G+G + +F +DP VFTFSMH
Sbjct: 119 DRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQGNGNSVVFQEDPDVFTFSMHQEN 178
Query: 442 NYPFRKQCSDLDVAIDVGTDDA 463
YP +K+ S LD+ ++ GT+D
Sbjct: 179 LYP-KKEKSGLDIPLEEGTNDG 199
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 114 HHSMPDRAEGFCYLNDAAIAVKLYQRAYPGRKILFIDLDLHQ 155
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 201 YLELLVESLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTFQG 244
>gi|427702267|ref|YP_007045489.1| deacetylase [Cyanobium gracile PCC 6307]
gi|427345435|gb|AFY28148.1| deacetylase, histone deacetylase/acetoin utilization protein
[Cyanobium gracile PCC 6307]
Length = 321
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRF------STHHAFPDHGAGFCLMNDMALAARYL- 529
S+R+ ++ G+ + + + ++R HHA P G GFC+ N++A+AAR+L
Sbjct: 94 SERTARLAAGGVLAAVEAVMEQRVHRAYAVVRPPGHHASPARGMGFCIYNNVAVAARHLQ 153
Query: 530 IRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLSSCVPGLY 568
HG+ R +L+VD DVH + + PS+ LSS LY
Sbjct: 154 AVHGLER-ILVVDWDVHHGNGTQDIFWSDPSVLFLSSHQAPLY 195
>gi|294139409|ref|YP_003555387.1| histone deacetylase/AcuC/AphA family protein [Shewanella violacea
DSS12]
gi|293325878|dbj|BAJ00609.1| histone deacetylase/AcuC/AphA family protein [Shewanella violacea
DSS12]
Length = 311
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL ND+ LAA + ++ + KVLI+D DVH
Sbjct: 125 HHAHNDFGSGFCLFNDLVLAAHFSLQKDDIHKVLIIDSDVH 165
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
H+ LI++ + + GDGTA + + T S HC +N+P RK SDLDV + GT D
Sbjct: 155 HKVLIIDSDV--HHGDGTATLCQGRDDIITLSFHCDKNFPARKPDSDLDVPLTRGTGD 210
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
LP+I+ Y + LP HR+P+ K+ ++ ++ D + Q PQ ++ +
Sbjct: 2 LPLIYHPIYSQLPLPEGHRYPIMKYQFLYDAIMEKTQNDTNWQQEITFFSPQALTLQDIK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIA 132
VH +YV G+ + + GF WS L R T T + A
Sbjct: 62 QVHDADYVDMLACGQLPANKMRRIGFPWSEALMQRTLTSAAGTVLTA 108
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 213 KPDLVIYDAGVDPHQHDELGKLNLT 237
+PDLVIYDAGVD H+ DELG L+++
Sbjct: 229 RPDLVIYDAGVDLHRDDELGYLDIS 253
>gi|324503375|gb|ADY41470.1| Histone deacetylase 6 [Ascaris suum]
Length = 847
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
+R E+ RN + R HHA P AGFC+ N++A+AA+Y + +
Sbjct: 533 EERKERARNAFALI-----------RPPGHHATPSQAAGFCIFNNVAIAAKYAMEKYGLE 581
Query: 537 KVLIVDLDVH 546
++LIVD DVH
Sbjct: 582 RILIVDWDVH 591
>gi|449488629|ref|XP_004186156.1| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 7 [Taeniopygia
guttata]
Length = 682
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ R HHA P GFC N +A+AAR L + G + K+LIVD DVH
Sbjct: 393 VVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLSKILIVDWDVH 439
>gi|307183184|gb|EFN70093.1| Histone deacetylase 6 [Camponotus floridanus]
Length = 1165
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D+ GFC+ N++A+AA+Y ++ +++VLIVD DVH
Sbjct: 654 HHAEEDNACGFCIFNNVAIAAQYAVQFHHLKRVLIVDWDVH 694
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+A + + ++LIVD DVH
Sbjct: 242 HHAMKSEYCGYCFFNNVAIAVEKALSSNLANRILIVDWDVH 282
>gi|147674598|ref|YP_001217568.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|227118489|ref|YP_002820385.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|262167664|ref|ZP_06035367.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC27]
gi|146316481|gb|ABQ21020.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|227013939|gb|ACP10149.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O395]
gi|262023869|gb|EEY42567.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC27]
Length = 306
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 61/178 (34%), Gaps = 58/178 (32%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK S +DV N+T +++ Q
Sbjct: 167 GDGTATLCAERDEIITLSFHCDKNFPARKPASSMDVGY-------ANQTGDEEFLSTFIQ 219
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
E N L P++ + AG + ND L
Sbjct: 220 AVEMAVN---------LHRPDLILYD---------AGVDIHNDDELG------------- 248
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
LS + RD ++L A IP+A V GGGY D
Sbjct: 249 --------------------YLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYRED 286
>gi|15642044|ref|NP_231676.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|153820272|ref|ZP_01972939.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae NCTC
8457]
gi|153824175|ref|ZP_01976842.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|227082169|ref|YP_002810720.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
M66-2]
gi|229507869|ref|ZP_04397374.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae BX
330286]
gi|229511896|ref|ZP_04401375.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|229519032|ref|ZP_04408475.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC9]
gi|229607414|ref|YP_002878062.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MJ-1236]
gi|254849129|ref|ZP_05238479.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MO10]
gi|255745211|ref|ZP_05419160.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholera CIRS
101]
gi|262155929|ref|ZP_06029050.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae INDRE
91/1]
gi|298497930|ref|ZP_07007737.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MAK
757]
gi|360035924|ref|YP_004937687.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. 2010EL-1786]
gi|379741866|ref|YP_005333835.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
IEC224]
gi|417814079|ref|ZP_12460732.1| histone deacetylase domain protein [Vibrio cholerae HC-49A2]
gi|417817817|ref|ZP_12464446.1| histone deacetylase domain protein [Vibrio cholerae HCUF01]
gi|418335058|ref|ZP_12943971.1| histone deacetylase domain protein [Vibrio cholerae HC-06A1]
gi|418338671|ref|ZP_12947565.1| histone deacetylase domain protein [Vibrio cholerae HC-23A1]
gi|418346594|ref|ZP_12951354.1| histone deacetylase domain protein [Vibrio cholerae HC-28A1]
gi|418350352|ref|ZP_12955083.1| histone deacetylase domain protein [Vibrio cholerae HC-43A1]
gi|418355888|ref|ZP_12958607.1| histone deacetylase domain protein [Vibrio cholerae HC-61A1]
gi|419827012|ref|ZP_14350511.1| histone deacetylase domain protein [Vibrio cholerae CP1033(6)]
gi|421318129|ref|ZP_15768697.1| histone deacetylase domain protein [Vibrio cholerae CP1032(5)]
gi|421321807|ref|ZP_15772360.1| histone deacetylase domain protein [Vibrio cholerae CP1038(11)]
gi|421325608|ref|ZP_15776132.1| histone deacetylase domain protein [Vibrio cholerae CP1041(14)]
gi|421333176|ref|ZP_15783653.1| histone deacetylase domain protein [Vibrio cholerae CP1046(19)]
gi|421336765|ref|ZP_15787226.1| histone deacetylase domain protein [Vibrio cholerae CP1048(21)]
gi|421340193|ref|ZP_15790625.1| histone deacetylase domain protein [Vibrio cholerae HC-20A2]
gi|421348484|ref|ZP_15798861.1| histone deacetylase domain protein [Vibrio cholerae HC-46A1]
gi|422897146|ref|ZP_16934594.1| histone deacetylase domain protein [Vibrio cholerae HC-40A1]
gi|422903345|ref|ZP_16938319.1| histone deacetylase domain protein [Vibrio cholerae HC-48A1]
gi|422907228|ref|ZP_16942031.1| histone deacetylase domain protein [Vibrio cholerae HC-70A1]
gi|422914075|ref|ZP_16948581.1| histone deacetylase domain protein [Vibrio cholerae HFU-02]
gi|422926281|ref|ZP_16959295.1| histone deacetylase domain protein [Vibrio cholerae HC-38A1]
gi|423145602|ref|ZP_17133196.1| histone deacetylase domain protein [Vibrio cholerae HC-19A1]
gi|423150278|ref|ZP_17137592.1| histone deacetylase domain protein [Vibrio cholerae HC-21A1]
gi|423154096|ref|ZP_17141277.1| histone deacetylase domain protein [Vibrio cholerae HC-22A1]
gi|423157181|ref|ZP_17144274.1| histone deacetylase domain protein [Vibrio cholerae HC-32A1]
gi|423160750|ref|ZP_17147690.1| histone deacetylase domain protein [Vibrio cholerae HC-33A2]
gi|423165576|ref|ZP_17152302.1| histone deacetylase domain protein [Vibrio cholerae HC-48B2]
gi|423768874|ref|ZP_17713020.1| histone deacetylase domain protein [Vibrio cholerae HC-50A2]
gi|423895478|ref|ZP_17727225.1| histone deacetylase domain protein [Vibrio cholerae HC-62A1]
gi|423930915|ref|ZP_17731618.1| histone deacetylase domain protein [Vibrio cholerae HC-77A1]
gi|424003030|ref|ZP_17746105.1| histone deacetylase domain protein [Vibrio cholerae HC-17A2]
gi|424006819|ref|ZP_17749789.1| histone deacetylase domain protein [Vibrio cholerae HC-37A1]
gi|424024802|ref|ZP_17764453.1| histone deacetylase domain protein [Vibrio cholerae HC-62B1]
gi|424027687|ref|ZP_17767290.1| histone deacetylase domain protein [Vibrio cholerae HC-69A1]
gi|424586963|ref|ZP_18026542.1| histone deacetylase domain protein [Vibrio cholerae CP1030(3)]
gi|424591759|ref|ZP_18031184.1| histone deacetylase domain protein [Vibrio cholerae CP1037(10)]
gi|424595611|ref|ZP_18034932.1| histone deacetylase domain protein [Vibrio cholerae CP1040(13)]
gi|424599529|ref|ZP_18038708.1| histone deacetylase domain protein [Vibrio Cholerae CP1044(17)]
gi|424602249|ref|ZP_18041390.1| histone deacetylase domain protein [Vibrio cholerae CP1047(20)]
gi|424607222|ref|ZP_18046164.1| histone deacetylase domain protein [Vibrio cholerae CP1050(23)]
gi|424611043|ref|ZP_18049882.1| histone deacetylase domain protein [Vibrio cholerae HC-39A1]
gi|424613854|ref|ZP_18052642.1| histone deacetylase domain protein [Vibrio cholerae HC-41A1]
gi|424617831|ref|ZP_18056503.1| histone deacetylase domain protein [Vibrio cholerae HC-42A1]
gi|424622615|ref|ZP_18061120.1| histone deacetylase domain protein [Vibrio cholerae HC-47A1]
gi|424645578|ref|ZP_18083314.1| histone deacetylase domain protein [Vibrio cholerae HC-56A2]
gi|424653344|ref|ZP_18090724.1| histone deacetylase domain protein [Vibrio cholerae HC-57A2]
gi|424657167|ref|ZP_18094452.1| histone deacetylase domain protein [Vibrio cholerae HC-81A2]
gi|440710238|ref|ZP_20890889.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
4260B]
gi|443504398|ref|ZP_21071356.1| histone deacetylase domain protein [Vibrio cholerae HC-64A1]
gi|443508297|ref|ZP_21075060.1| histone deacetylase domain protein [Vibrio cholerae HC-65A1]
gi|443512139|ref|ZP_21078777.1| histone deacetylase domain protein [Vibrio cholerae HC-67A1]
gi|443515696|ref|ZP_21082207.1| histone deacetylase domain protein [Vibrio cholerae HC-68A1]
gi|443519489|ref|ZP_21085885.1| histone deacetylase domain protein [Vibrio cholerae HC-71A1]
gi|443524380|ref|ZP_21090593.1| histone deacetylase domain protein [Vibrio cholerae HC-72A2]
gi|443531976|ref|ZP_21097990.1| histone deacetylase domain protein [Vibrio cholerae HC-7A1]
gi|443535776|ref|ZP_21101653.1| histone deacetylase domain protein [Vibrio cholerae HC-80A1]
gi|443539319|ref|ZP_21105173.1| histone deacetylase domain protein [Vibrio cholerae HC-81A1]
gi|449055536|ref|ZP_21734204.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. Inaba G4222]
gi|9656588|gb|AAF95190.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126509182|gb|EAZ71776.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae NCTC
8457]
gi|126518301|gb|EAZ75526.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|227010057|gb|ACP06269.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
M66-2]
gi|229343721|gb|EEO08696.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae RC9]
gi|229351861|gb|EEO16802.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae B33]
gi|229355374|gb|EEO20295.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae BX
330286]
gi|229370069|gb|ACQ60492.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MJ-1236]
gi|254844834|gb|EET23248.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MO10]
gi|255737041|gb|EET92437.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholera CIRS
101]
gi|262030240|gb|EEY48883.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae INDRE
91/1]
gi|297542263|gb|EFH78313.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae MAK
757]
gi|340036565|gb|EGQ97541.1| histone deacetylase domain protein [Vibrio cholerae HC-49A2]
gi|340037540|gb|EGQ98515.1| histone deacetylase domain protein [Vibrio cholerae HCUF01]
gi|341620789|gb|EGS46543.1| histone deacetylase domain protein [Vibrio cholerae HC-48A1]
gi|341620988|gb|EGS46740.1| histone deacetylase domain protein [Vibrio cholerae HC-70A1]
gi|341621824|gb|EGS47555.1| histone deacetylase domain protein [Vibrio cholerae HC-40A1]
gi|341637299|gb|EGS61987.1| histone deacetylase domain protein [Vibrio cholerae HFU-02]
gi|341646063|gb|EGS70181.1| histone deacetylase domain protein [Vibrio cholerae HC-38A1]
gi|356417082|gb|EHH70701.1| histone deacetylase domain protein [Vibrio cholerae HC-06A1]
gi|356418270|gb|EHH71873.1| histone deacetylase domain protein [Vibrio cholerae HC-21A1]
gi|356422816|gb|EHH76285.1| histone deacetylase domain protein [Vibrio cholerae HC-19A1]
gi|356428656|gb|EHH81882.1| histone deacetylase domain protein [Vibrio cholerae HC-22A1]
gi|356430313|gb|EHH83522.1| histone deacetylase domain protein [Vibrio cholerae HC-23A1]
gi|356432899|gb|EHH86094.1| histone deacetylase domain protein [Vibrio cholerae HC-28A1]
gi|356439455|gb|EHH92424.1| histone deacetylase domain protein [Vibrio cholerae HC-32A1]
gi|356444848|gb|EHH97657.1| histone deacetylase domain protein [Vibrio cholerae HC-43A1]
gi|356445491|gb|EHH98295.1| histone deacetylase domain protein [Vibrio cholerae HC-33A2]
gi|356450597|gb|EHI03314.1| histone deacetylase domain protein [Vibrio cholerae HC-48B2]
gi|356452386|gb|EHI05065.1| histone deacetylase domain protein [Vibrio cholerae HC-61A1]
gi|356647078|gb|AET27133.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. 2010EL-1786]
gi|378795376|gb|AFC58847.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
IEC224]
gi|395916387|gb|EJH27217.1| histone deacetylase domain protein [Vibrio cholerae CP1032(5)]
gi|395917446|gb|EJH28274.1| histone deacetylase domain protein [Vibrio cholerae CP1041(14)]
gi|395918801|gb|EJH29625.1| histone deacetylase domain protein [Vibrio cholerae CP1038(11)]
gi|395928578|gb|EJH39331.1| histone deacetylase domain protein [Vibrio cholerae CP1046(19)]
gi|395931864|gb|EJH42608.1| histone deacetylase domain protein [Vibrio cholerae CP1048(21)]
gi|395939476|gb|EJH50158.1| histone deacetylase domain protein [Vibrio cholerae HC-20A2]
gi|395943063|gb|EJH53739.1| histone deacetylase domain protein [Vibrio cholerae HC-46A1]
gi|395958647|gb|EJH69126.1| histone deacetylase domain protein [Vibrio cholerae HC-56A2]
gi|395959239|gb|EJH69682.1| histone deacetylase domain protein [Vibrio cholerae HC-57A2]
gi|395961942|gb|EJH72251.1| histone deacetylase domain protein [Vibrio cholerae HC-42A1]
gi|395970729|gb|EJH80469.1| histone deacetylase domain protein [Vibrio cholerae HC-47A1]
gi|395972960|gb|EJH82534.1| histone deacetylase domain protein [Vibrio cholerae CP1030(3)]
gi|395975395|gb|EJH84886.1| histone deacetylase domain protein [Vibrio cholerae CP1047(20)]
gi|408007037|gb|EKG45148.1| histone deacetylase domain protein [Vibrio cholerae HC-39A1]
gi|408012616|gb|EKG50391.1| histone deacetylase domain protein [Vibrio cholerae HC-41A1]
gi|408030652|gb|EKG67306.1| histone deacetylase domain protein [Vibrio cholerae CP1037(10)]
gi|408031991|gb|EKG68591.1| histone deacetylase domain protein [Vibrio cholerae CP1040(13)]
gi|408041546|gb|EKG77652.1| histone deacetylase domain protein [Vibrio Cholerae CP1044(17)]
gi|408042813|gb|EKG78846.1| histone deacetylase domain protein [Vibrio cholerae CP1050(23)]
gi|408053174|gb|EKG88194.1| histone deacetylase domain protein [Vibrio cholerae HC-81A2]
gi|408607802|gb|EKK81205.1| histone deacetylase domain protein [Vibrio cholerae CP1033(6)]
gi|408633618|gb|EKL05943.1| histone deacetylase domain protein [Vibrio cholerae HC-50A2]
gi|408654347|gb|EKL25489.1| histone deacetylase domain protein [Vibrio cholerae HC-77A1]
gi|408655278|gb|EKL26403.1| histone deacetylase domain protein [Vibrio cholerae HC-62A1]
gi|408845427|gb|EKL85543.1| histone deacetylase domain protein [Vibrio cholerae HC-37A1]
gi|408845564|gb|EKL85679.1| histone deacetylase domain protein [Vibrio cholerae HC-17A2]
gi|408870259|gb|EKM09539.1| histone deacetylase domain protein [Vibrio cholerae HC-62B1]
gi|408878990|gb|EKM17983.1| histone deacetylase domain protein [Vibrio cholerae HC-69A1]
gi|439974461|gb|ELP50638.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
4260B]
gi|443431343|gb|ELS73895.1| histone deacetylase domain protein [Vibrio cholerae HC-64A1]
gi|443435239|gb|ELS81383.1| histone deacetylase domain protein [Vibrio cholerae HC-65A1]
gi|443439122|gb|ELS88837.1| histone deacetylase domain protein [Vibrio cholerae HC-67A1]
gi|443443106|gb|ELS96408.1| histone deacetylase domain protein [Vibrio cholerae HC-68A1]
gi|443446907|gb|ELT03563.1| histone deacetylase domain protein [Vibrio cholerae HC-71A1]
gi|443449714|gb|ELT10005.1| histone deacetylase domain protein [Vibrio cholerae HC-72A2]
gi|443457366|gb|ELT24763.1| histone deacetylase domain protein [Vibrio cholerae HC-7A1]
gi|443461052|gb|ELT32126.1| histone deacetylase domain protein [Vibrio cholerae HC-80A1]
gi|443465419|gb|ELT40079.1| histone deacetylase domain protein [Vibrio cholerae HC-81A1]
gi|448264575|gb|EMB01812.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae O1
str. Inaba G4222]
Length = 306
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDEIITLSFHCDKNFPARKPASSMDVGYANQTGD 210
>gi|384248980|gb|EIE22463.1| hypothetical protein COCSUDRAFT_16559 [Coccomyxa subellipsoidea
C-169]
Length = 370
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVHQ---HTRS---IPVPSL 557
HHA D+G G+C+ +D LA R L R +V+K +++DLDVHQ H R+ L
Sbjct: 169 HHASVDNGGGWCVYDDWTLALRKLRRETGNVVQKAMLIDLDVHQGNGHARTKLHFGDKDL 228
Query: 558 TVLSSCVPGLYMRDYYVLDT----AISAGIPVATVTG 590
+L LY D + DT AI+ +P+ + TG
Sbjct: 229 YILD-----LYNADLWPWDTTAKAAINCELPMKSGTG 260
>gi|52549579|gb|AAU83428.1| deacetylase [uncultured archaeon GZfos28B8]
Length = 361
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P G GFCL ND+A A+YL++ ++++LI+D D H
Sbjct: 138 HHAKPSFGEGFCLYNDVAYTAKYLMQEYDLKRILILDTDAH 178
>gi|153831403|ref|ZP_01984070.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
623-39]
gi|148873114|gb|EDL71249.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
623-39]
Length = 306
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|407070923|ref|ZP_11101761.1| histone deacetylase/AcuC/AphA family protein [Vibrio cyclitrophicus
ZF14]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA++ + + KVLIVD DVH
Sbjct: 125 HHAHHDFGSGFCLLNDLVLAAKHALTFEHIDKVLIVDSDVHH 166
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 72/197 (36%), Gaps = 58/197 (29%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + ++ + T S HC +N+P RK SDLDV + T D
Sbjct: 167 GDGTATLCQENDDIITLSFHCDKNFPARKPLSDLDVPLSRETGDEE-------------- 212
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
LR + ++ + + H PD LI V
Sbjct: 213 -------------FLRCFE-QVTKLAIAHHQPD-----------------LI-------V 234
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADID 598
+D+HQ L L+ G++ RD ++ A IP+A V GGGY
Sbjct: 235 YDAGIDIHQDDE------LGYLNVSTQGIFERDCLMVSLAKLESIPMACVVGGGYRTQHQ 288
Query: 599 QLAQRQTIIHRAATHVY 615
L + +AA +Y
Sbjct: 289 DLVPIHMQLLKAAYEIY 305
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 209 LAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+A +PDL++YDAG+D HQ DELG LN++ G
Sbjct: 225 IAHHQPDLIVYDAGIDIHQDDELGYLNVSTQG 256
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFS---KTFNYLVRDKVIDKSK-QLIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ L+ + KS+ ++ +P +S +
Sbjct: 2 IPLIYHPIYSQLPLPEGHRYPINKYQLLHGAVEALMDSDPLWKSQFEVFQPMPVSVEQVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VH EYV +G + + GF WS L R
Sbjct: 62 QVHDSEYVDLLISGNLPAAKMRRIGFPWSEQLIER 96
>gi|392404048|ref|YP_006440660.1| histone deacetylase superfamily [Turneriella parva DSM 21527]
gi|390612002|gb|AFM13154.1| histone deacetylase superfamily [Turneriella parva DSM 21527]
Length = 294
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF DH GFC +ND LA R L + KV ++DLDVHQ
Sbjct: 117 HHAFADHAEGFCFVNDTVLAIRALRKTRPGLKVAVIDLDVHQ 158
>gi|419830506|ref|ZP_14353991.1| histone deacetylase domain protein [Vibrio cholerae HC-1A2]
gi|419834188|ref|ZP_14357643.1| histone deacetylase domain protein [Vibrio cholerae HC-61A2]
gi|422917892|ref|ZP_16952210.1| histone deacetylase domain protein [Vibrio cholerae HC-02A1]
gi|423822793|ref|ZP_17716803.1| histone deacetylase domain protein [Vibrio cholerae HC-55C2]
gi|423856759|ref|ZP_17720611.1| histone deacetylase domain protein [Vibrio cholerae HC-59A1]
gi|423883062|ref|ZP_17724199.1| histone deacetylase domain protein [Vibrio cholerae HC-60A1]
gi|423998319|ref|ZP_17741571.1| histone deacetylase domain protein [Vibrio cholerae HC-02C1]
gi|424017213|ref|ZP_17757042.1| histone deacetylase domain protein [Vibrio cholerae HC-55B2]
gi|424020137|ref|ZP_17759923.1| histone deacetylase domain protein [Vibrio cholerae HC-59B1]
gi|424625511|ref|ZP_18063972.1| histone deacetylase domain protein [Vibrio cholerae HC-50A1]
gi|424629994|ref|ZP_18068281.1| histone deacetylase domain protein [Vibrio cholerae HC-51A1]
gi|424634042|ref|ZP_18072142.1| histone deacetylase domain protein [Vibrio cholerae HC-52A1]
gi|424637120|ref|ZP_18075128.1| histone deacetylase domain protein [Vibrio cholerae HC-55A1]
gi|424641029|ref|ZP_18078912.1| histone deacetylase domain protein [Vibrio cholerae HC-56A1]
gi|424649095|ref|ZP_18086758.1| histone deacetylase domain protein [Vibrio cholerae HC-57A1]
gi|443528013|ref|ZP_21094061.1| histone deacetylase domain protein [Vibrio cholerae HC-78A1]
gi|341636774|gb|EGS61468.1| histone deacetylase domain protein [Vibrio cholerae HC-02A1]
gi|408012064|gb|EKG49860.1| histone deacetylase domain protein [Vibrio cholerae HC-50A1]
gi|408017961|gb|EKG55433.1| histone deacetylase domain protein [Vibrio cholerae HC-52A1]
gi|408023175|gb|EKG60354.1| histone deacetylase domain protein [Vibrio cholerae HC-56A1]
gi|408023669|gb|EKG60828.1| histone deacetylase domain protein [Vibrio cholerae HC-55A1]
gi|408032614|gb|EKG69195.1| histone deacetylase domain protein [Vibrio cholerae HC-57A1]
gi|408054782|gb|EKG89741.1| histone deacetylase domain protein [Vibrio cholerae HC-51A1]
gi|408620279|gb|EKK93291.1| histone deacetylase domain protein [Vibrio cholerae HC-1A2]
gi|408634769|gb|EKL07004.1| histone deacetylase domain protein [Vibrio cholerae HC-55C2]
gi|408640551|gb|EKL12340.1| histone deacetylase domain protein [Vibrio cholerae HC-59A1]
gi|408641186|gb|EKL12967.1| histone deacetylase domain protein [Vibrio cholerae HC-60A1]
gi|408649010|gb|EKL20327.1| histone deacetylase domain protein [Vibrio cholerae HC-61A2]
gi|408852674|gb|EKL92496.1| histone deacetylase domain protein [Vibrio cholerae HC-02C1]
gi|408859924|gb|EKL99578.1| histone deacetylase domain protein [Vibrio cholerae HC-55B2]
gi|408867231|gb|EKM06593.1| histone deacetylase domain protein [Vibrio cholerae HC-59B1]
gi|443453529|gb|ELT17348.1| histone deacetylase domain protein [Vibrio cholerae HC-78A1]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|417821386|ref|ZP_12468000.1| histone deacetylase domain protein [Vibrio cholerae HE39]
gi|423956550|ref|ZP_17735104.1| histone deacetylase domain protein [Vibrio cholerae HE-40]
gi|423985338|ref|ZP_17738655.1| histone deacetylase domain protein [Vibrio cholerae HE-46]
gi|340039017|gb|EGQ99991.1| histone deacetylase domain protein [Vibrio cholerae HE39]
gi|408657344|gb|EKL28424.1| histone deacetylase domain protein [Vibrio cholerae HE-40]
gi|408663942|gb|EKL34787.1| histone deacetylase domain protein [Vibrio cholerae HE-46]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|121591754|ref|ZP_01678964.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
2740-80]
gi|121546385|gb|EAX56637.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
2740-80]
Length = 171
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
>gi|153827202|ref|ZP_01979869.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-2]
gi|149738887|gb|EDM53215.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-2]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 61/178 (34%), Gaps = 58/178 (32%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK S +DV N+T +++ Q
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGF-------ANQTGDEEFLSTFIQ 219
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
E N L P++ + AG + ND
Sbjct: 220 VVEMAVN---------LHQPDLILYD---------AGVDIHND----------------- 244
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
L LS + RD ++L A IP+A V GGGY D
Sbjct: 245 ----------------DELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYRED 286
>gi|328699049|ref|XP_001942623.2| PREDICTED: histone deacetylase 6-like [Acyrthosiphon pisum]
Length = 839
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+ A Y++RH V K+LIVD DVH
Sbjct: 185 HHAMKSEFCGYCFFNNIAITAEYVLRHYSVSKILIVDWDVH 225
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N +A+AA Y + +++++I+D D+H
Sbjct: 599 HHAELDIACGFCIFNSVAIAASYALNKYGLKRIMILDWDIH 639
>gi|229524050|ref|ZP_04413455.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae bv.
albensis VL426]
gi|229337631|gb|EEO02648.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae bv.
albensis VL426]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|421351773|ref|ZP_15802138.1| histone deacetylase domain protein [Vibrio cholerae HE-25]
gi|395952218|gb|EJH62832.1| histone deacetylase domain protein [Vibrio cholerae HE-25]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|422910892|ref|ZP_16945520.1| histone deacetylase domain protein [Vibrio cholerae HE-09]
gi|424660555|ref|ZP_18097802.1| histone deacetylase domain protein [Vibrio cholerae HE-16]
gi|341632766|gb|EGS57623.1| histone deacetylase domain protein [Vibrio cholerae HE-09]
gi|408050285|gb|EKG85450.1| histone deacetylase domain protein [Vibrio cholerae HE-16]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|451946710|ref|YP_007467305.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfocapsa sulfexigens DSM 10523]
gi|451906058|gb|AGF77652.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfocapsa sulfexigens DSM 10523]
Length = 354
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA D GFCL N++A+AA+Y I H +++V+IVD D+H
Sbjct: 121 RPPGHHAERDRSMGFCLFNNVAVAAKYAISHHKMKRVMIVDWDLHH 166
>gi|429885836|ref|ZP_19367411.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae PS15]
gi|429227354|gb|EKY33385.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae PS15]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|327400501|ref|YP_004341340.1| histone deacetylase superfamily protein [Archaeoglobus veneficus
SNP6]
gi|327316009|gb|AEA46625.1| histone deacetylase superfamily [Archaeoglobus veneficus SNP6]
Length = 359
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P GAGFC +N++A+A ++L R+G +K+LI+D D H
Sbjct: 125 HHARPYTGAGFCYLNNIAIATKWLQRNGF-KKILILDWDAH 164
>gi|229513698|ref|ZP_04403160.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TMA
21]
gi|229348879|gb|EEO13836.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TMA
21]
Length = 306
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|417825291|ref|ZP_12471879.1| histone deacetylase domain protein [Vibrio cholerae HE48]
gi|340046776|gb|EGR07706.1| histone deacetylase domain protein [Vibrio cholerae HE48]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAECDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|229528940|ref|ZP_04418330.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
12129(1)]
gi|297579548|ref|ZP_06941476.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
RC385]
gi|384425022|ref|YP_005634380.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
LMA3984-4]
gi|229332714|gb|EEN98200.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
12129(1)]
gi|297537142|gb|EFH75975.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
RC385]
gi|327484575|gb|AEA78982.1| Histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
LMA3984-4]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|262189882|ref|ZP_06048207.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae CT
5369-93]
gi|262034235|gb|EEY52650.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae CT
5369-93]
Length = 295
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 61/178 (34%), Gaps = 58/178 (32%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK S +DV N+T +++ Q
Sbjct: 167 GDGTATLCAECDDIITLSFHCDKNFPARKPASSMDVGF-------ANQTGDEEFLSTFIQ 219
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
E N L P++ + AG + ND L
Sbjct: 220 VVEMAVN---------LHRPDLILYD---------AGVDIHNDDELG------------- 248
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
LS + RD ++L A IP+A V GGGY D
Sbjct: 249 --------------------YLSISQAAIAQRDRFMLGLAKQQSIPIACVIGGGYRED 286
>gi|392410691|ref|YP_006447298.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfomonile tiedjei DSM 6799]
gi|390623827|gb|AFM25034.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfomonile tiedjei DSM 6799]
Length = 346
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLI-RHGIVRKVLIVDLDVHQ 547
HHA PD G+C+ N++ +AA+Y I RHG R++LI+D D+H
Sbjct: 125 HHATPDKAGGYCIFNNIGIAAKYAIERHGF-RRILILDFDIHH 166
>gi|422923349|ref|ZP_16956503.1| histone deacetylase domain protein [Vibrio cholerae BJG-01]
gi|341644088|gb|EGS68329.1| histone deacetylase domain protein [Vibrio cholerae BJG-01]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|302038518|ref|YP_003798840.1| putative deacetylase, histone deacetylase family [Candidatus
Nitrospira defluvii]
gi|300606582|emb|CBK42915.1| putative Deacetylase, histone deacetylase family [Candidatus
Nitrospira defluvii]
Length = 314
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFCL N++A+AARY + V++VLIVD DVH
Sbjct: 126 HHAEADRAMGFCLFNNVAIAARYAQKRYGVQRVLIVDWDVH 166
>gi|229522001|ref|ZP_04411418.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TM
11079-80]
gi|419837765|ref|ZP_14361203.1| histone deacetylase domain protein [Vibrio cholerae HC-46B1]
gi|421344657|ref|ZP_15795060.1| histone deacetylase domain protein [Vibrio cholerae HC-43B1]
gi|421354707|ref|ZP_15805039.1| histone deacetylase domain protein [Vibrio cholerae HE-45]
gi|422307990|ref|ZP_16395143.1| histone deacetylase domain protein [Vibrio cholerae CP1035(8)]
gi|423735719|ref|ZP_17708915.1| histone deacetylase domain protein [Vibrio cholerae HC-41B1]
gi|424010057|ref|ZP_17752993.1| histone deacetylase domain protein [Vibrio cholerae HC-44C1]
gi|229340926|gb|EEO05931.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae TM
11079-80]
gi|395940737|gb|EJH51418.1| histone deacetylase domain protein [Vibrio cholerae HC-43B1]
gi|395953832|gb|EJH64445.1| histone deacetylase domain protein [Vibrio cholerae HE-45]
gi|408618659|gb|EKK91724.1| histone deacetylase domain protein [Vibrio cholerae CP1035(8)]
gi|408629577|gb|EKL02258.1| histone deacetylase domain protein [Vibrio cholerae HC-41B1]
gi|408856313|gb|EKL96008.1| histone deacetylase domain protein [Vibrio cholerae HC-46B1]
gi|408863585|gb|EKM03062.1| histone deacetylase domain protein [Vibrio cholerae HC-44C1]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + ++ Q P S
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+H +YV GK + + GF WS L R
Sbjct: 62 RLHDPDYVQALLEGKLPAAKMRRIGFPWSKPLIER 96
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTAILCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|121730304|ref|ZP_01682673.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae V52]
gi|121627942|gb|EAX60511.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae V52]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|288931849|ref|YP_003435909.1| histone deacetylase superfamily [Ferroglobus placidus DSM 10642]
gi|288894097|gb|ADC65634.1| histone deacetylase superfamily [Ferroglobus placidus DSM 10642]
Length = 240
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC N++A+A R L R G +RK IVD D+H
Sbjct: 96 HHASPDSCWGFCYFNNVAIAVRKLQRLGKIRKAAIVDFDLH 136
>gi|254286837|ref|ZP_04961790.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
AM-19226]
gi|150423128|gb|EDN15076.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
AM-19226]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAERDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|302343340|ref|YP_003807869.1| histone deacetylase superfamily protein [Desulfarculus baarsii DSM
2075]
gi|301639953|gb|ADK85275.1| histone deacetylase superfamily [Desulfarculus baarsii DSM 2075]
Length = 343
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA PD GFCL N++A+AA +LI + +VLIVD DVH
Sbjct: 123 HHATPDRAMGFCLFNNVAVAAAHLIEARGLERVLIVDWDVHH 164
>gi|153217599|ref|ZP_01951280.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae 1587]
gi|153803619|ref|ZP_01958205.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-3]
gi|124113455|gb|EAY32275.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae 1587]
gi|124120845|gb|EAY39588.1| histone deacetylase/AcuC/AphA family protein [Vibrio cholerae
MZO-3]
Length = 306
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHH 166
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + + T S HC +N+P RK S +DV T D
Sbjct: 167 GDGTATLCAECDDIITLSFHCDKNFPARKPASSMDVGFANQTGD 210
>gi|170052821|ref|XP_001862395.1| histone deacetylase [Culex quinquefasciatus]
gi|167873617|gb|EDS37000.1| histone deacetylase [Culex quinquefasciatus]
Length = 1108
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA D GFC+ N++A+AA+Y IR +++VLIVD DVH
Sbjct: 635 IVRPPGHHAESDMPHGFCIFNNVAIAAQYAIRDHGLKRVLIVDWDVH 681
>gi|408791371|ref|ZP_11202981.1| histone deacetylase family protein [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408462781|gb|EKJ86506.1| histone deacetylase family protein [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 313
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA DH GFC+ N++A+ A+YL GI +++LI+D DVH
Sbjct: 128 HHAEADHAMGFCIFNNIAITAKYLQSKGI-KRILILDWDVHH 168
>gi|359728114|ref|ZP_09266810.1| deacetylase [Leptospira weilii str. 2006001855]
gi|417781407|ref|ZP_12429159.1| histone deacetylase family protein [Leptospira weilii str.
2006001853]
gi|410778658|gb|EKR63284.1| histone deacetylase family protein [Leptospira weilii str.
2006001853]
Length = 270
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+G + IF +D VFTFSMH YP +K+ S LD+ ++ GTDD
Sbjct: 124 ILFIDLDLHQGNGNSVIFQEDSNVFTFSMHQENLYP-KKEKSGLDIPLEEGTDDG 177
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + + RK+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIAVKLYQKAYPGRKILFIDLDLHQ 133
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLLESLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTLQG 222
>gi|261209974|ref|ZP_05924273.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. RC341]
gi|260840920|gb|EEX67457.1| histone deacetylase/AcuC/AphA family protein [Vibrio sp. RC341]
Length = 306
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+A+AA + + V KVLI+D DVH
Sbjct: 125 HHAHVDFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDVHH 166
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + + + + PQ + S+
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQQEHSEEWRTAFHFMAPQMAALSLVR 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
VH +YV G + + GF WS L R
Sbjct: 62 SVHDSDYVRTLLEGTLPAAKMRRIGFPWSEKLIER 96
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
GDGTA + + + T S HC +N+P RK SD+D+ T D+
Sbjct: 167 GDGTATLCAQRDDIITLSFHCDKNFPARKPASDMDIEFCKQTGDS 211
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
S + +T K+ + ++ +PDL+IYDAGVD H DELG L+++
Sbjct: 211 SEFISTFKQVVEIAVSVHQPDLIIYDAGVDIHHDDELGYLSIS 253
>gi|300088549|ref|YP_003759071.1| histone deacetylase superfamily protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528282|gb|ADJ26750.1| histone deacetylase superfamily [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 309
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 451 DLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFP 510
DLD + G+ A T A + V + + ++G FL ++R HHAF
Sbjct: 79 DLDTVLSPGSWQAA-VTAAGSAVAAVEAVTNGGVDSGCFL---------LSRPPGHHAFA 128
Query: 511 DHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ G+GFCL+N++A+A R + + + I+D DVH
Sbjct: 129 ERGSGFCLLNNIAIATRAALERFGLERAAIIDWDVHH 165
>gi|229821747|ref|YP_002883273.1| histone deacetylase [Beutenbergia cavernae DSM 12333]
gi|229567660|gb|ACQ81511.1| histone deacetylase superfamily [Beutenbergia cavernae DSM 12333]
Length = 411
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P AGFC+ ND+A+A R+L+ G R+V VDLD H
Sbjct: 152 HHAMPGAAAGFCVYNDLAIAIRWLLDAG-ARRVAYVDLDAHH 192
>gi|320164043|gb|EFW40942.1| histone deacetylase 11 [Capsaspora owczarzaki ATCC 30864]
Length = 372
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ---HTRSIPVPSLTVLSS 562
HHA + G GFC+ D++ A + L+R G+ R +IVDLD HQ H V
Sbjct: 218 HHASCNEGGGFCIFADISFAIKLLMREGLQR-AMIVDLDAHQGNGHENDFAQDKDRVY-- 274
Query: 563 CVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHR 609
+ +Y RD Y D +G+ + G AD + Q I+ R
Sbjct: 275 -ILDVYNRDIYPGDRKAKSGMSLNVPVSSG-IADAEMAVSEQGILDR 319
>gi|358637882|dbj|BAL25179.1| histone deacetylase family protein [Azoarcus sp. KH32C]
Length = 329
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
+ + + + + + LPP HRFPM K+S+ L +S I P S++ H
Sbjct: 12 LEVKLFYADHFVLPLPPGHRFPMEKYSRLRARLAASGHFGES-DFIVPTAASDTEILRAH 70
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVR 122
Y+ + +G+ EQ+ GF W+ + R R
Sbjct: 71 DAGYLSRAASGRLEPAEQRRIGFPWTPQMIERSR 104
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS----THHAFPDHGAGFCL 518
A R + W + +RS R+ G L R + E + THHA D G+GFC+
Sbjct: 86 AEQRRIGFPWTPQMIERSR--RSAGATLAACRRALTEGCSANLAGGTHHAHRDFGSGFCV 143
Query: 519 MNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
ND A+AA + G+ RKV +VD DVHQ
Sbjct: 144 FNDAAIAALAMQAEGLARKVAVVDCDVHQ 172
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ GDGTA I +FT S+H +N+PFRK SDLDV + GT D+
Sbjct: 171 HQGDGTATILAGRRDLFTLSLHGAKNFPFRKAVSDLDVELPDGTGDS 217
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
S Y A L + L + ++F+PDLVIY AG DP + D LG+L LT G
Sbjct: 217 SAYLAALNDALSDLFSRFEPDLVIYLAGADPFEGDRLGRLALTFDG 262
>gi|297570602|ref|YP_003691946.1| Histone deacetylase [Desulfurivibrio alkaliphilus AHT2]
gi|296926517|gb|ADH87327.1| Histone deacetylase [Desulfurivibrio alkaliphilus AHT2]
Length = 350
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA DH +GFCL N++A+AAR+ +++ + +VLIVD D+H
Sbjct: 126 HHAEHDHTSGFCLFNNIAVAARHALKNHGLERVLIVDWDLH 166
>gi|312883681|ref|ZP_07743405.1| histone deacetylase/AcuC/AphA family protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368654|gb|EFP96182.1| histone deacetylase/AcuC/AphA family protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 307
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ LAAR ++ + KVLIVD DVH
Sbjct: 125 HHAHYDFGSGFCLFNDLVLAARSALQLEGIGKVLIVDSDVHH 166
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 62/199 (31%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI--DVGTDDAGNRTVALTWVTFL 476
GDGTA + + D + T S HC +N+P RK SDLDV D G D+ N +F
Sbjct: 167 GDGTASLCNGDERIVTLSFHCDKNFPARKPESDLDVPFCRDTGDDEFLN--------SFT 218
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
S I + H PD C++ D
Sbjct: 219 S----------------------IVEMAVHMHQPD-----CILYDAG------------- 238
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+D+H L L +Y RD ++ + A +P+A V GGGY ++
Sbjct: 239 ------VDIHTDDE------LGYLDVSTGAIYKRDVFMFNLAKRYHLPIACVVGGGYRSN 286
Query: 597 IDQLAQRQTIIHRAATHVY 615
L + RA+ V+
Sbjct: 287 HSDLVPIHLQLVRASLTVF 305
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSK-----QLIEPQQISESIA 84
+P+I+ Y + LP HR+P++K+ F+ + ++ ++ +EP ++ +
Sbjct: 2 IPLIYHPIYSQLPLPEGHRYPINKYRLLFD-AIEERCNEQPSWRQNFHFVEPTPLTLNDV 60
Query: 85 ELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYL 135
E VH + +V++ +G + + GF WS L R T T H +AV+L
Sbjct: 61 EKVHNEAFVNQLASGTLPGAKMRRIGFPWSEQLIKRTLTSAGGTCETVKQALSHGVAVHL 120
>gi|390337555|ref|XP_783282.2| PREDICTED: histone deacetylase 11-like [Strongylocentrotus
purpuratus]
Length = 491
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH G GFC D+ LA R+L G ++K +I+DLD HQ
Sbjct: 249 HHCSSKQGGGFCAYADITLALRFLFHQGTIKKAMILDLDAHQ 290
>gi|157114211|ref|XP_001657988.1| histone deacetylase [Aedes aegypti]
gi|108883594|gb|EAT47819.1| AAEL001069-PA [Aedes aegypti]
Length = 1059
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA D GFC+ N++A+AA+Y IR +++VLIVD DVH
Sbjct: 583 IVRPPGHHAESDMPHGFCIFNNVAIAAQYAIRDHGLKRVLIVDWDVH 629
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA G+C N++A+AA++ + ++K+L+VD D+H
Sbjct: 157 IIRPPGHHAMKAEYNGYCFFNNVAIAAQHALDRLGLKKILVVDWDIH 203
>gi|149175826|ref|ZP_01854444.1| acetoin utilization protein [Planctomyces maris DSM 8797]
gi|148845273|gb|EDL59618.1| acetoin utilization protein [Planctomyces maris DSM 8797]
Length = 310
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D GFCL+N++A+AAR+ I + +VLIVD DVH
Sbjct: 122 HHALSDRAMGFCLLNNVAIAARHAIDFHGLNRVLIVDWDVHH 163
>gi|116619442|ref|YP_821598.1| histone deacetylase superfamily protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116222604|gb|ABJ81313.1| histone deacetylase superfamily [Candidatus Solibacter usitatus
Ellin6076]
Length = 312
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA G GFCL+N++A+AARY R + +V IVD DVH
Sbjct: 125 HHANAARGMGFCLLNNVAIAARYAQRRHGIERVAIVDWDVHH 166
>gi|11499871|ref|NP_071115.1| acetylpolyamine aminohydrolase [Archaeoglobus fulgidus DSM 4304]
gi|2648229|gb|AAB88964.1| acetylpolyamine aminohydrolase, putative [Archaeoglobus fulgidus
DSM 4304]
Length = 187
Score = 48.9 bits (115), Expect = 0.007, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD GFC N++A+A + L+ G ++K +IVD D+H
Sbjct: 41 HHASPDSSWGFCYFNNIAIAVKKLLVEGRIKKAVIVDFDLH 81
>gi|110677510|ref|YP_680517.1| acetoin utilization protein [Roseobacter denitrificans OCh 114]
gi|109453626|gb|ABG29831.1| acetoin utilization protein, putative [Roseobacter denitrificans
OCh 114]
Length = 376
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV-----PSLT 558
THH PD GFC +ND LA L R+G V+++ VD+D H H + P
Sbjct: 129 GTHHGMPDRANGFCYLNDPVLAMLSLRRNG-VQRIAYVDIDAH-HCDGVAAGFHGDPQCL 186
Query: 559 VLSSCVPGLYMRDYYVLDTAISAGI 583
++S GL+ R + DTA AG+
Sbjct: 187 MISVHEEGLWPRTGLLEDTAGGAGL 211
>gi|383935850|ref|ZP_09989283.1| histone deacetylase superfamily protein [Rheinheimera nanhaiensis
E407-8]
gi|383703169|dbj|GAB59374.1| histone deacetylase superfamily protein [Rheinheimera nanhaiensis
E407-8]
Length = 313
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAI 456
+ GDG+A + +P + + S+HC +N+P+RKQ SD D+A+
Sbjct: 163 HQGDGSALLLADEPRIISCSVHCEKNFPYRKQQSDWDIAL 202
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102
LP HR+P+ K+ L+ V + + QL EP +SE+ VH Y+ +G
Sbjct: 19 LPTQHRYPIMKYRALHQQLLSLGVPEGAFQLAEP--VSEAALSQVHCPTYIQSLKDGSID 76
Query: 103 EKEQKVTGFEWSAGLASR 120
K + GF WSA L R
Sbjct: 77 AKAMRRIGFPWSAQLYQR 94
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT 237
Y + + L +L +PDLV+YDAGVD H+ DELG LN++
Sbjct: 211 YLTAVGQSLSSLLNWHQPDLVLYDAGVDIHRDDELGLLNIS 251
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 21/89 (23%)
Query: 457 DVGTDDAGNRTVALTWVTFLSQRS------------EKMRNNGIFLFLLRLSDPEINRFS 504
D D R + W L QRS + GI L L
Sbjct: 72 DGSIDAKAMRRIGFPWSAQLYQRSLCSVGGTVQTAQAAVDTGGIALHL---------SGG 122
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHG 533
HHAF G+GFCL ND+ +AA+ L++ G
Sbjct: 123 YHHAFYAEGSGFCLFNDLVVAAKTLLKQG 151
>gi|421098612|ref|ZP_15559277.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200901122]
gi|410798365|gb|EKS00460.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200901122]
Length = 313
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L LS N FS HHA + GFC++N++A+ ARYL ++G+ +K+
Sbjct: 99 NSGITLADALLSGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGL-KKIF 157
Query: 540 IVDLDVHQ 547
I+D DVH
Sbjct: 158 IIDWDVHH 165
>gi|456865517|gb|EMF83851.1| histone deacetylase family protein [Leptospira weilii serovar Topaz
str. LT2116]
Length = 316
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L LS N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 99 NSGIILADALLSGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGF-KKIF 157
Query: 540 IVDLDVHQ 547
I+D DVH
Sbjct: 158 IIDWDVHH 165
>gi|115379349|ref|ZP_01466456.1| deacetylase [Stigmatella aurantiaca DW4/3-1]
gi|310825011|ref|YP_003957369.1| histone deacetylase family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363631|gb|EAU62759.1| deacetylase [Stigmatella aurantiaca DW4/3-1]
gi|309398083|gb|ADO75542.1| Histone deacetylase family protein [Stigmatella aurantiaca DW4/3-1]
Length = 487
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 491 FLLRLSDPEINRFST-HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ L P +N HHA PDHG GFC++ND+A+A L G V ++DLD H
Sbjct: 125 WALSTQRPAVNMAGGFHHAAPDHGGGFCVLNDIAVAIATLRHEGFDGPVGVLDLDAH 181
>gi|418738197|ref|ZP_13294593.1| histone deacetylase family protein [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410746371|gb|EKQ99278.1| histone deacetylase family protein [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 270
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQ 133
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+G + +F +D VFTFSMH YP +K+ S LD+ ++ GT+D
Sbjct: 124 ILFIDLDLHQGNGNSVVFQEDSDVFTFSMHQENLYP-KKEKSGLDIPLEEGTEDG 177
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEESLHKIKSDFKPDLIFYIAGADPFEGDSLGDLKLTLQG 222
>gi|52549274|gb|AAU83123.1| acetoin utilization protein [uncultured archaeon GZfos26F9]
Length = 351
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P+ G GFC+ N++A+A +L R + +VLI D DVH
Sbjct: 129 HHATPNKGMGFCIFNNIAIATEHLKREYGINRVLIADWDVHH 170
>gi|421098269|ref|ZP_15558940.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200901122]
gi|410798537|gb|EKS00626.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200901122]
Length = 270
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQ 133
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+G + +F +D VFTFSMH YP +K+ S LD+ ++ GTDD
Sbjct: 124 ILFIDLDLHQGNGNSVVFQEDSDVFTFSMHQENLYP-KKEKSGLDIPLEEGTDDG 177
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLVESLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTLQG 222
>gi|428216994|ref|YP_007101459.1| histone deacetylase superfamily protein [Pseudanabaena sp. PCC
7367]
gi|427988776|gb|AFY69031.1| histone deacetylase superfamily [Pseudanabaena sp. PCC 7367]
Length = 309
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P+ G GFC+ ++ A+AA Y + H + +V I+D DVH
Sbjct: 130 HHAKPERGMGFCIFSNAAIAANYALEHAQIDRVAILDWDVH 170
>gi|256076430|ref|XP_002574515.1| histone deacetylase hda2 [Schistosoma mansoni]
Length = 1132
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRS----IPVPSLTVLS 561
HHA + GFC+ N++A+AA Y I ++LIVD DVH + P + +S
Sbjct: 181 HHALTNEACGFCIYNNVAIAANYAIEKLNYNRILIVDWDVHHGNTTQYAFYDNPKVLFIS 240
Query: 562 -------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHR 609
P L +Y + T G V Y D D L TI HR
Sbjct: 241 IHRYDNGEFWPNLRESNYDFIGTGRGRGFNVNIALNDVYIGDSDYL----TIFHR 291
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 489 FLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
++ + L+ + R HHA D GFC N++A+ AR+ + + ++ I+D DVH
Sbjct: 584 YIMVFYLNGMALIRPPGHHALKDRCMGFCFFNNVAIGARHAQQVYGLERIAIIDWDVHH 642
>gi|418720651|ref|ZP_13279847.1| histone deacetylase family protein [Leptospira borgpetersenii str.
UI 09149]
gi|410742925|gb|EKQ91670.1| histone deacetylase family protein [Leptospira borgpetersenii str.
UI 09149]
Length = 270
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQ 133
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+G + +F +D VFTFSMH YP +K+ S LD+ ++ GT+D
Sbjct: 124 ILFIDLDLHQGNGNSVVFQEDSDVFTFSMHQENLYP-KKEKSGLDIPLEEGTEDG 177
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L+E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLEESLHKIKSDFKPDLIFYIAGADPFEGDSLGDLKLTLQG 222
>gi|421092686|ref|ZP_15553418.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200801926]
gi|410364537|gb|EKP15558.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200801926]
gi|456889867|gb|EMG00737.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200701203]
Length = 270
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 92 HHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQ 133
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + G+G + +F +D VFTFSMH YP +K+ S LD+ ++ GT+D
Sbjct: 124 ILFIDLDLHQGNGNSVVFQEDSDVFTFSMHQENLYP-KKEKSGLDIPLEEGTEDG----- 177
Query: 469 ALTWVTFLSQRSEKMRNN 486
++ L++ K++++
Sbjct: 178 --KYLELLTESLHKIKSD 193
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 179 YLELLTESLHKIKSDFKPDLIFYIAGADPFEGDSLGDLKLTLQG 222
>gi|402815920|ref|ZP_10865512.1| acetoin utilization protein AcuC [Paenibacillus alvei DSM 29]
gi|402506960|gb|EJW17483.1| acetoin utilization protein AcuC [Paenibacillus alvei DSM 29]
Length = 391
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAF D GAGFC+ ND A+A +L RH +VL +D DVH
Sbjct: 139 HHAFGDKGAGFCVYNDAAVAIAWL-RHTYCARVLYIDTDVHH 179
>gi|308478451|ref|XP_003101437.1| hypothetical protein CRE_13458 [Caenorhabditis remanei]
gi|308263338|gb|EFP07291.1| hypothetical protein CRE_13458 [Caenorhabditis remanei]
Length = 364
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSLTVLSSC 563
HHA +GFC+ N++A+AA+Y R +++LI+D DVH T+ I V+
Sbjct: 59 HHASASKSSGFCIFNNVAVAAKYAQRRYKAKRILILDWDVHHGNGTQEIFYEDANVMYMS 118
Query: 564 V---------PGLYMRDYYVLDTAISAGIPVATVTGGGYCADID-QLAQRQTII 607
+ P +DY+ + G+ V G DI+ Q+A ++ I+
Sbjct: 119 IHRHDKGNFYPVGEPKDYFDVGEGAGEGMSVNVPFSGAQMGDIEYQMAFQRVIM 172
>gi|392533893|ref|ZP_10281030.1| histone deacetylase superfamily protein [Pseudoalteromonas arctica
A 37-1-2]
Length = 297
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ D G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 118 HHSHSDFGSGFCIFNDLAIAAAHLINTEQADTVLIFDCDVHQ 159
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI---EPQQISESIAELVHTKEYVHKFFNG 99
L HRFP+ K+ L++ ++ + I EP++++ S L H++ Y+ F NG
Sbjct: 14 LAERHRFPIQKYK-----LLKTEIENLGVSAIHFQEPKKVTVSQLALCHSQRYIDDFLNG 68
Query: 100 KTTEKEQKVTGFEWSAGLASRV 121
++K K GF +S L R
Sbjct: 69 TLSDKAIKKMGFPYSQQLVERT 90
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + T S+HC +N+P KQ S D A+ T D ++ L
Sbjct: 158 HQGDGTAQITQNHNQIITCSIHCEQNFPRNKQESTYDFALPAKTADD-------EYLATL 210
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q + F +R+ +P+I ++ GA +++ L
Sbjct: 211 KQALD---------FCVRIHNPDIILYNA-------GADIYTKDELGL------------ 242
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+ + G+Y RD +VL+ IP+ GGGY +
Sbjct: 243 -----------------------FNISLNGVYERDLFVLNFCKQHQIPLMCALGGGYQRN 279
Query: 597 IDQLAQRQTIIHRAA 611
+ L + +AA
Sbjct: 280 LSSLINVHKQLFKAA 294
>gi|359442098|ref|ZP_09231977.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20429]
gi|358036038|dbj|GAA68226.1| histone deacetylase family protein [Pseudoalteromonas sp. BSi20429]
Length = 297
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ D G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 118 HHSHSDFGSGFCIFNDLAIAAAHLINTEQADTVLIFDCDVHQ 159
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 43 LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLI---EPQQISESIAELVHTKEYVHKFFNG 99
L HRFP+ K+ L++ ++ + I EP++++ S L H++ Y+ F NG
Sbjct: 14 LAERHRFPIQKYK-----LLKTEIENLGVSAIHFQEPKKVTVSQLALCHSQRYIDDFLNG 68
Query: 100 KTTEKEQKVTGFEWSAGLASRV 121
+K K GF +S L R
Sbjct: 69 TLGDKAIKKMGFPYSQQLVERT 90
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + T S+HC +N+P KQ S D A+ T D ++ L
Sbjct: 158 HQGDGTAQITQNHNQIITCSIHCEQNFPRNKQESTYDFALPAKTADD-------EYLATL 210
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q + F +R+ +P+I ++ GA +++ L
Sbjct: 211 KQALD---------FCVRIHNPDIILYNA-------GADIYTKDELGL------------ 242
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
+ + G+Y RD +VL+ P+ GGGY +
Sbjct: 243 -----------------------FNISLNGVYERDLFVLNFCKQHQTPLMCALGGGYQRN 279
Query: 597 IDQLAQRQTIIHRAA 611
+ L + +AA
Sbjct: 280 LSSLINVHKQLFKAA 294
>gi|260767385|ref|ZP_05876323.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii CIP
102972]
gi|260617620|gb|EEX42801.1| histone deacetylase/AcuC/AphA family protein [Vibrio furnissii CIP
102972]
Length = 306
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 65/222 (29%)
Query: 403 SSHRALIME-------IGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVA 455
++H+AL+++ + + GDGTA + + T S HC +N+P RK SD+D+A
Sbjct: 143 AAHQALLLDGIDKVLIVDSDVHHGDGTATLCAARDDIITLSFHCDKNFPARKPESDIDIA 202
Query: 456 IDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAG 515
+ + DAG+ FLS + + L P++ + AG
Sbjct: 203 L---SRDAGDE-------EFLSHF------QSVVTMAVNLHRPDLIIYD---------AG 237
Query: 516 FCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVL 575
+D+HQ L ++ RD +++
Sbjct: 238 ---------------------------IDIHQDDE------LGYFHVSTDAIFQRDCFMM 264
Query: 576 DTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYKE 617
A +P+A V GGGY +D L + +AA HV+KE
Sbjct: 265 RLAKQHQLPMACVVGGGYRSDHQTLVPIHMQLFKAAFHVHKE 306
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ LAA + + KVLIVD DVH
Sbjct: 124 HHAHRDFGSGFCLYNDLVLAAHQALLLDGIDKVLIVDSDVHH 165
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 99/260 (38%), Gaps = 30/260 (11%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVR---DKVIDKSKQLIEPQQISESIAEL 86
+P+I+ + Y + LP HR+P++K+ ++ L+ D ++ + P ++ +
Sbjct: 2 IPLIYHSIYSQLPLPQGHRYPINKYRLLYDALIEMQADADWLRTFEFFSPTALTCDAIKQ 61
Query: 87 VHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLPF 137
VH EYV G + + GF WS L R T T H +A++L
Sbjct: 62 VHDSEYVDALTFGTLPAAKMRRIGFPWSDALIERTLTSAGGTCLTAQLAVEHGVAIHLSG 121
Query: 138 FLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGY 197
F L + + +A + L D ++ +H G T +
Sbjct: 122 GYHHAHRDFGSGFCLYNDLVLAAHQALLLDG----IDKVLIVDSDVHHGDGTATLCAARD 177
Query: 198 Q-ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSA-------RI 249
TL H KP ++ +D + G H + + + A I
Sbjct: 178 DIITLSFHCDKNFPARKP-----ESDIDIALSRDAGDEEFLSHFQSVVTMAVNLHRPDLI 232
Query: 250 SSEAGVDPHQHDELGKLNLT 269
+AG+D HQ DELG +++
Sbjct: 233 IYDAGIDIHQDDELGYFHVS 252
>gi|422002105|ref|ZP_16349343.1| histone deacetylase [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259037|gb|EKT88416.1| histone deacetylase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 313
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L LS N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYS-----AANSGITLADALLSGTIKNGFSLLRPPGHHAERNRIMGFCILNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
ARYL ++G +K+ I+D DVH
Sbjct: 145 ARYLQKNGF-KKIFIIDWDVH 164
>gi|291449725|ref|ZP_06589115.1| histone deacetylase-like amidohydrolase [Streptomyces albus J1074]
gi|421743543|ref|ZP_16181600.1| deacetylase, histone deacetylase/acetoin utilization protein
[Streptomyces sp. SM8]
gi|291352674|gb|EFE79576.1| histone deacetylase-like amidohydrolase [Streptomyces albus J1074]
gi|406688034|gb|EKC91998.1| deacetylase, histone deacetylase/acetoin utilization protein
[Streptomyces sp. SM8]
Length = 382
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA PD CL N++A+AAR RHG VR+VL++D DVH
Sbjct: 137 RPPGHHAEPDRAMALCLYNNLAVAARAAQRHG-VRRVLVLDWDVHH 181
>gi|116753988|ref|YP_843106.1| histone deacetylase superfamily protein [Methanosaeta thermophila
PT]
gi|116665439|gb|ABK14466.1| histone deacetylase superfamily [Methanosaeta thermophila PT]
Length = 344
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 492 LLRLSDP--EINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+++ DP + R HHA P G GFC+ N++A+ ARY G+ +KVLIVD DVH
Sbjct: 110 VMKKPDPVFALVRPPGHHATPHRGMGFCVFNNVAIGARYAQSLGL-KKVLIVDWDVHH 166
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
SGY A KE L + +F+P++V AG DPHQ D LG + LT++G
Sbjct: 221 SGYLAVYKEILVPVADEFRPEIVFVSAGFDPHQMDPLGGMRLTENG 266
>gi|298529624|ref|ZP_07017027.1| Histone deacetylase [Desulfonatronospira thiodismutans ASO3-1]
gi|298511060|gb|EFI34963.1| Histone deacetylase [Desulfonatronospira thiodismutans ASO3-1]
Length = 315
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P G GFCL N++ALAAR+ ++ + ++L++D DVH
Sbjct: 126 HHARPGMGMGFCLFNNVALAARHAMKKYGLDRILVIDWDVH 166
>gi|116327589|ref|YP_797309.1| deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116331800|ref|YP_801518.1| deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
gi|116120333|gb|ABJ78376.1| Deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116125489|gb|ABJ76760.1| Deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
Length = 301
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + R RK+L +DLD+HQ
Sbjct: 123 HHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQ 164
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 45/258 (17%)
Query: 22 KSQLDRLVHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISE 81
+ QL+R+ +++ Y L P H FP K+ ++ + +D+ + + P+ +
Sbjct: 2 EKQLERI---GLVYHPDYNIDLGP-HIFPARKYQMIYDLVKQDRKL-ADLYVYRPEPAKD 56
Query: 82 SIAELVHTKEYVHKFFNGKTTEK---------EQKVTGFEWSAGLASRVRTDPVPTHVIA 132
LVHTKE++ FF+ K TE+ +Q V F + G + + T+ +
Sbjct: 57 KDLTLVHTKEFLKDFFSLKITERTQYSELPLTKQIVQSFVLAVG-GTILATELTQKYKFV 115
Query: 133 VYLPF-FLQRRPVFFDIAAVLADL-ICIAVYLTFFLQRRPVFFDI--------AAVL--- 179
++ F P + L D I + +Y + R+ +F D+ + V
Sbjct: 116 YHIGGGFHHSMPDRAEGFCYLNDAAIAVKLYQRTYPGRKILFIDLDLHQGNGNSVVFQED 175
Query: 180 ADLIHFMV------------GINTQPVSG-----YQATLKEHLPGILAQFKPDLVIYDAG 222
+D+ F + G++ G Y L E L I + FKPDL+ Y AG
Sbjct: 176 SDVFTFSMHQENLYPKKEKSGLDIPLEEGTEDGKYLELLTESLHKIKSDFKPDLIFYIAG 235
Query: 223 VDPHQHDELGKLNLTDHG 240
DP + D LG L LT G
Sbjct: 236 ADPFEGDSLGDLKLTLQG 253
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ I L + G+G + +F +D VFTFSMH YP +K+ S LD+ ++ GT+D
Sbjct: 155 ILFIDLDLHQGNGNSVVFQEDSDVFTFSMHQENLYP-KKEKSGLDIPLEEGTEDG----- 208
Query: 469 ALTWVTFLSQRSEKMRNN 486
++ L++ K++++
Sbjct: 209 --KYLELLTESLHKIKSD 224
>gi|224012517|ref|XP_002294911.1| histone deacetylase Rpd3 HDA2 HDA1 HDAC HD2 [Thalassiosira
pseudonana CCMP1335]
gi|220969350|gb|EED87691.1| histone deacetylase Rpd3 HDA2 HDA1 HDAC HD2 [Thalassiosira
pseudonana CCMP1335]
Length = 348
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 557 LTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVYK 616
L LS G+ RD +V+ + IPVA V GGGY D+ +L R ++I R + +++
Sbjct: 281 LGRLSLSWEGMKQRDIHVVRRCLIDNIPVACVVGGGYSTDVRELGIRHSLISRVCSLMWR 340
Query: 617 ERGL 620
E GL
Sbjct: 341 EYGL 344
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVHQ 547
THHA G GF ++ND+A+ AR + + V +VL+VD DVHQ
Sbjct: 138 GTHHAESCRGKGFTILNDLAVVARLMTWNEGDEVERVLVVDCDVHQ 183
>gi|219851271|ref|YP_002465703.1| histone deacetylase superfamily protein [Methanosphaerula palustris
E1-9c]
gi|219545530|gb|ACL15980.1| histone deacetylase superfamily [Methanosphaerula palustris E1-9c]
Length = 328
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFCL N+ A+AA +L R G+ +V IVD D+H
Sbjct: 119 HHAEPDRGMGFCLFNNAAIAATHLQREGM--RVAIVDWDLH 157
>gi|88798310|ref|ZP_01113896.1| Deacetylase, including yeast histone deacetylase and acetoin
utilization protein [Reinekea blandensis MED297]
gi|88779086|gb|EAR10275.1| Deacetylase, including yeast histone deacetylase and acetoin
utilization protein [Reinekea sp. MED297]
Length = 308
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HHA P+ GFC N++A+AA + ++H + +V I+D DVHQ +I + P + + +
Sbjct: 126 HHAEPNVTMGFCFFNNIAVAAEHALKHHKLSRVAIIDFDVHQCNGTIEMYENRPEVMICT 185
Query: 562 SCVPGLYMRDYYVLD 576
S Y ++ L+
Sbjct: 186 SFQHPFYPNKHWALE 200
>gi|311743330|ref|ZP_07717137.1| acetoin dehydrogenase AcuC [Aeromicrobium marinum DSM 15272]
gi|311313398|gb|EFQ83308.1| acetoin dehydrogenase AcuC [Aeromicrobium marinum DSM 15272]
Length = 393
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVP 565
HHA P +GFC+ ND+ALA R+L+ HG +V VD+D H V
Sbjct: 133 HHAMPGRASGFCIYNDVALAIRWLLDHG-AERVAYVDVDAHH-------------GDGVQ 178
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIH 608
++ D VL ++ G P G GY + T ++
Sbjct: 179 AMFWDDPRVLTISVHEG-PQTLFPGTGYATETGGEGAEGTAVN 220
>gi|119487596|ref|ZP_01621206.1| hypothetical protein L8106_27107 [Lyngbya sp. PCC 8106]
gi|119455765|gb|EAW36901.1| hypothetical protein L8106_27107 [Lyngbya sp. PCC 8106]
Length = 308
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----P 555
+ R HHA D G GFCL ++ A+AA Y ++ ++KV I+D DVH + + P
Sbjct: 123 LARPPGHHAEADRGMGFCLFSNAAIAAYYALKQPNIKKVAILDWDVHHGNGTQAIIENNP 182
Query: 556 SLTVL----SSCVPG 566
+L S C PG
Sbjct: 183 NLAYCSLHQSPCYPG 197
>gi|443669257|ref|ZP_21134491.1| histone deacetylase domain protein [Microcystis aeruginosa
DIANCHI905]
gi|159027296|emb|CAO86838.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330452|gb|ELS45166.1| histone deacetylase domain protein [Microcystis aeruginosa
DIANCHI905]
Length = 305
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L SDP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTSDPTFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|398336031|ref|ZP_10520736.1| histone deacetylase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 352
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L +S N FS HHA + GFC++N++A+AARYL ++G +K+
Sbjct: 118 NSGITLADALISGKIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIAARYLQKNGF-KKIF 176
Query: 540 IVDLDVH 546
I+D DVH
Sbjct: 177 IIDWDVH 183
>gi|298675423|ref|YP_003727173.1| histone deacetylase superfamily protein [Methanohalobium
evestigatum Z-7303]
gi|298288411|gb|ADI74377.1| histone deacetylase superfamily [Methanohalobium evestigatum
Z-7303]
Length = 337
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFCL N++A+AA+Y G+ ++VLI+D DVH
Sbjct: 119 HHAESDRAKGFCLFNNIAIAAKYAQSQGM-KRVLIIDWDVH 158
>gi|309792427|ref|ZP_07686893.1| histone deacetylase superfamily [Oscillochloris trichoides DG-6]
gi|308225537|gb|EFO79299.1| histone deacetylase superfamily [Oscillochloris trichoides DG6]
Length = 349
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA P+ GFCL+N++A+AAR+ + +R+V IVD DVH
Sbjct: 123 RPPGHHATPNRAMGFCLINNVAVAARHALNRYGLRRVAIVDYDVHH 168
>gi|391329901|ref|XP_003739405.1| PREDICTED: histone deacetylase 6-like [Metaseiulus occidentalis]
Length = 1260
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRS 551
I R HHA G+CL N++A+AA+Y + H + +VLIVD DVH S
Sbjct: 131 IIRPPGHHAMEGEHCGYCLFNNVAIAAKYAVEHMGLERVLIVDWDVHHGQAS 182
>gi|303280659|ref|XP_003059622.1| histone deacetylase [Micromonas pusilla CCMP1545]
gi|226459458|gb|EEH56754.1| histone deacetylase [Micromonas pusilla CCMP1545]
Length = 403
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIR---HGIVRK----VLIVDLDVHQ 547
THHAF D G GFC+ ND+A+AA +R H + + +LIVDLDVHQ
Sbjct: 190 GTHHAFADAGEGFCVFNDIAVAATMALREYDHLLSARSKTPILIVDLDVHQ 240
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFR-KQCSDLDVAIDVGTDDAGNRT 467
I+ + L + G+GTA IF+ DP V TFS H +NYP++ K S DV + D
Sbjct: 231 ILIVDLDVHQGNGTAKIFEDDPRVVTFSAHGEKNYPWKTKMRSTHDVELPDDASDDQCVK 290
Query: 468 VALTWVTFL 476
V W+ FL
Sbjct: 291 VFEEWIPFL 299
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
L + + E LP NHRFPM K+ T L D + +L+ + + VH
Sbjct: 70 LRTYYADWAEVILPDNHRFPMEKYKATRLLLEADASLAGKLELLPSPALDLADVLAVHES 129
Query: 91 EYVHKFFNGKTTEKEQKVTGF 111
YV + + TEKE + GF
Sbjct: 130 GYVDRVLRCELTEKETRAIGF 150
>gi|418713784|ref|ZP_13274507.1| histone deacetylase family protein [Leptospira interrogans str. UI
08452]
gi|410789775|gb|EKR83473.1| histone deacetylase family protein [Leptospira interrogans str. UI
08452]
Length = 313
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|24213615|ref|NP_711096.1| histone deacetylase [Leptospira interrogans serovar Lai str. 56601]
gi|386073219|ref|YP_005987536.1| histone deacetylase [Leptospira interrogans serovar Lai str. IPAV]
gi|24194411|gb|AAN48114.1| histone deacetylase [Leptospira interrogans serovar Lai str. 56601]
gi|353457008|gb|AER01553.1| histone deacetylase [Leptospira interrogans serovar Lai str. IPAV]
Length = 313
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|261253511|ref|ZP_05946084.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417956016|ref|ZP_12599014.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260936902|gb|EEX92891.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342811536|gb|EGU46573.1| histone deacetylase/AcuC/AphA family protein [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 307
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 96/261 (36%), Gaps = 63/261 (24%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQL----IEPQQISESIAE 85
+P+I+ + Y E LP HR+P++K+ + + + + + Q + P +
Sbjct: 2 IPLIYHSIYSELPLPEGHRYPINKYRLLHDAINSEINANAAWQEQFTHVVPSMLDRQAVT 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT---------HVIAVYLP 136
VH +EY+ F+G + + GF WS L +R T T H IA++L
Sbjct: 62 QVHCQEYIDLLFSGTLPAPKMRRIGFPWSETLITRTLTSAGGTCETVNQSVEHGIAIHLS 121
Query: 137 FFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVL---ADLIHFMVGINTQP 193
F C+ L +R DI VL +D+ H G T
Sbjct: 122 GGYHHAHHDFGSG------FCLVNDLVLAAKRALTIDDIDKVLIVDSDVHH---GDGTAT 172
Query: 194 VSGYQA---TLKEHLPGILAQFKP----------------------------------DL 216
+ A TL H KP DL
Sbjct: 173 LCADDASIVTLSFHCDKNFPARKPQSDLDVPLARESGDDEFLETFTSVVEMAVNLHQPDL 232
Query: 217 VIYDAGVDPHQHDELGKLNLT 237
++YDAGVD H+ DELG L+++
Sbjct: 233 ILYDAGVDIHKDDELGYLSVS 253
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL+ND+ LAA+ + + KVLIVD DVH
Sbjct: 125 HHAHHDFGSGFCLVNDLVLAAKRALTIDDIDKVLIVDSDVHH 166
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDV--AIDVGTDD 462
GDGTA + D ++ T S HC +N+P RK SDLDV A + G D+
Sbjct: 167 GDGTATLCADDASIVTLSFHCDKNFPARKPQSDLDVPLARESGDDE 212
>gi|343503019|ref|ZP_08740854.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii ATCC
19109]
gi|418480546|ref|ZP_13049603.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342812689|gb|EGU47681.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii ATCC
19109]
gi|384571835|gb|EIF02364.1| histone deacetylase/AcuC/AphA family protein [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 307
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G+GFCL+ND+ LAA+ + + KVLIVD DVH
Sbjct: 125 HHAHRDFGSGFCLVNDLVLAAKRALTFEGIDKVLIVDSDVH 165
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVID----KSKQLIEPQQISESIAE 85
+P+I+ + Y E LP HR+P++K+ F + + + ++ ++ Q ++P + +
Sbjct: 2 IPLIYHSLYSELPLPDGHRYPINKYRLLFEAIEQQRAVNPVWQQAFQYVQPAPVDQVEVS 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
VH +Y+ +G+ + + GF WS L +R T
Sbjct: 62 QVHCPDYIQLLTSGELPAPKMRRIGFPWSETLITRTLT 99
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
GDGTA + +++ A+ T S HC +N+P RK SDLDV + T DA
Sbjct: 167 GDGTATLCEEEDAIVTLSFHCEKNFPARKPDSDLDVPLGRDTGDA 211
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 556 SLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615
L LS +Y RD ++ A +P+A V GGGYC + L + RAA +VY
Sbjct: 246 ELGYLSISSDAIYTRDVFMFQLARKKQLPIACVVGGGYCTEHQALVPIHMQLIRAALNVY 305
>gi|322370186|ref|ZP_08044748.1| histone deacetylase superfamily protein [Haladaptatus
paucihalophilus DX253]
gi|320550522|gb|EFW92174.1| histone deacetylase superfamily protein [Haladaptatus
paucihalophilus DX253]
Length = 341
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 445 FRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQR--SEKMRNNGIFLFLLRLSDPEINR 502
FR+ C D G D VA TW L +E + R + + R
Sbjct: 63 FREFCED-----GGGNWDPDTVAVAATWDAALESAGLAEWAAKAALSGEDGRSTPFALGR 117
Query: 503 FSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D GFC N+ A+AAR +I G +V I+D DVH
Sbjct: 118 PPGHHAVEDDAMGFCFFNNAAVAARSVIDEGEAERVAILDWDVHH 162
>gi|45658561|ref|YP_002647.1| acetoin-histone deacetylase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|417761510|ref|ZP_12409519.1| histone deacetylase family protein [Leptospira interrogans str.
2002000624]
gi|417775766|ref|ZP_12423615.1| histone deacetylase family protein [Leptospira interrogans str.
2002000621]
gi|417784566|ref|ZP_12432272.1| histone deacetylase family protein [Leptospira interrogans str.
C10069]
gi|418674690|ref|ZP_13235989.1| histone deacetylase family protein [Leptospira interrogans str.
2002000623]
gi|418701546|ref|ZP_13262471.1| histone deacetylase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418729578|ref|ZP_13288125.1| histone deacetylase family protein [Leptospira interrogans str. UI
12758]
gi|421085449|ref|ZP_15546302.1| histone deacetylase family protein [Leptospira santarosai str.
HAI1594]
gi|421103681|ref|ZP_15564278.1| histone deacetylase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601805|gb|AAS71284.1| acetoin- histone deacetylase family [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|409942591|gb|EKN88199.1| histone deacetylase family protein [Leptospira interrogans str.
2002000624]
gi|409952383|gb|EKO06896.1| histone deacetylase family protein [Leptospira interrogans str.
C10069]
gi|410366644|gb|EKP22035.1| histone deacetylase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432085|gb|EKP76443.1| histone deacetylase family protein [Leptospira santarosai str.
HAI1594]
gi|410574414|gb|EKQ37447.1| histone deacetylase family protein [Leptospira interrogans str.
2002000621]
gi|410578349|gb|EKQ46211.1| histone deacetylase family protein [Leptospira interrogans str.
2002000623]
gi|410759628|gb|EKR25840.1| histone deacetylase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410775756|gb|EKR55747.1| histone deacetylase family protein [Leptospira interrogans str. UI
12758]
gi|455791354|gb|EMF43170.1| histone deacetylase family protein [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456824751|gb|EMF73177.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456982662|gb|EMG19194.1| histone deacetylase family protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 313
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|421114631|ref|ZP_15575046.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410013813|gb|EKO71889.1| histone deacetylase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
Length = 313
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|417772111|ref|ZP_12420001.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418680417|ref|ZP_13241666.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418707007|ref|ZP_13267844.1| histone deacetylase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|400327775|gb|EJO80015.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|409946068|gb|EKN96082.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|410763358|gb|EKR34088.1| histone deacetylase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|455667658|gb|EMF32954.1| histone deacetylase family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 313
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|254467831|ref|ZP_05081237.1| histone deacetylase superfamily protein [beta proteobacterium KB13]
gi|207086641|gb|EDZ63924.1| histone deacetylase superfamily protein [beta proteobacterium KB13]
Length = 324
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 501 NRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
NR HHA D G GFC+ N A+AA+YL + ++LI+D DVH
Sbjct: 128 NRPPGHHATRDRGMGFCIYNHAAIAAKYLQMKYSLSRILIIDFDVHH 174
>gi|359728013|ref|ZP_09266709.1| histone deacetylase [Leptospira weilii str. 2006001855]
Length = 315
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L LS N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 101 NSGITLADALLSGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGF-KKIF 159
Query: 540 IVDLDVHQ 547
I+D DVH
Sbjct: 160 IIDWDVHH 167
>gi|417781233|ref|ZP_12428985.1| histone deacetylase family protein [Leptospira weilii str.
2006001853]
gi|410778484|gb|EKR63110.1| histone deacetylase family protein [Leptospira weilii str.
2006001853]
Length = 321
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L LS N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 107 NSGITLADALLSGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGF-KKIF 165
Query: 540 IVDLDVHQ 547
I+D DVH
Sbjct: 166 IIDWDVHH 173
>gi|417766121|ref|ZP_12414075.1| histone deacetylase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|418670332|ref|ZP_13231703.1| histone deacetylase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418689537|ref|ZP_13250658.1| histone deacetylase family protein [Leptospira interrogans str.
FPW2026]
gi|418710471|ref|ZP_13271242.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418725219|ref|ZP_13283895.1| histone deacetylase family protein [Leptospira interrogans str. UI
12621]
gi|421128071|ref|ZP_15588289.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421133453|ref|ZP_15593601.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|400351575|gb|EJP03794.1| histone deacetylase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400361216|gb|EJP17183.1| histone deacetylase family protein [Leptospira interrogans str.
FPW2026]
gi|409961601|gb|EKO25346.1| histone deacetylase family protein [Leptospira interrogans str. UI
12621]
gi|410022461|gb|EKO89238.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410434538|gb|EKP83676.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410753714|gb|EKR15372.1| histone deacetylase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410769407|gb|EKR44649.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|456971347|gb|EMG11975.1| histone deacetylase family protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 313
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|345489606|ref|XP_003426178.1| PREDICTED: histone deacetylase 6-like [Nasonia vitripennis]
Length = 1094
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSL 557
I R HHA D GFC+ N++A+AA+Y + +++VLIVD D+H T+SI
Sbjct: 617 IVRPPGHHAEEDAACGFCIFNNVAIAAKYAVSCHNLKRVLIVDWDIHHGNGTQSILENDS 676
Query: 558 TVL---------SSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
++L S P +Y V+ T G V D + +A Q ++
Sbjct: 677 SILYISLHRYDNGSFFPHSKAANYNVVGTGKGEGFNVNIPWNKRGMGDAEYIAAFQQVV 735
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A++A +++ + +++LIVD DVH
Sbjct: 248 HHAMKAEYCGYCFFNNVAISAEVALKNNLAKRILIVDWDVH 288
>gi|421121713|ref|ZP_15582006.1| histone deacetylase family protein [Leptospira interrogans str.
Brem 329]
gi|410345564|gb|EKO96660.1| histone deacetylase family protein [Leptospira interrogans str.
Brem 329]
Length = 313
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGIILSEFLISGTIKNGFSLLRPPDHHAEHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVHH 165
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F+PD+V+ AG D H++D LG +N+T G
Sbjct: 214 QVNSGDQAYIQKFKEIIVPTMERFEPDIVLISAGFDAHKNDPLGGMNITTKG 265
>gi|145355001|ref|XP_001421761.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581999|gb|ABP00055.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 350
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 505 THHAFPDHGAGFCLMNDMALA---ARYLIRHGIV-RKVLIVDLDVHQ 547
THHA+ D G GFC+ ND+A+A AR + RK+L++DLDVHQ
Sbjct: 158 THHAYRDRGEGFCVFNDVAVAINVARREFADSLRDRKILVIDLDVHQ 204
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQIS-ESIAELVHT 89
L + + LP HRFPM K+++T L RD + L+E ++ ES L H
Sbjct: 39 LSVFFADWARVDLPDGHRFPMDKYARTREALRRDAALVNKITLLESPKVDIESELLLTHC 98
Query: 90 KEYVHKFFNGKTTEKEQKVTGF 111
EYV + E E + GF
Sbjct: 99 PEYVQRVLTLTLREDEVRKIGF 120
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFR-KQCSDLDVAIDVGTDDAGNRT 467
I+ I L + G+GTA IF+ D V TFSMH +NYP + ++ S DV + +D +
Sbjct: 195 ILVIDLDVHQGNGTAKIFEGDAQVVTFSMHGEKNYPIKTREKSTHDVELPDDCEDEEYLS 254
Query: 468 VALTWV 473
+ W+
Sbjct: 255 LLEQWL 260
>gi|120611121|ref|YP_970799.1| histone deacetylase superfamily protein [Acidovorax citrulli
AAC00-1]
gi|120589585|gb|ABM33025.1| histone deacetylase superfamily [Acidovorax citrulli AAC00-1]
Length = 356
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI 552
R HHA PD G+C +N+ A+AA++L+ G R+V ++D+D H T+SI
Sbjct: 157 RPPGHHAGPDFMGGYCFLNNAAVAAQWLLDAGTARRVAVLDVDYHHGNGTQSI 209
>gi|443894818|dbj|GAC72165.1| histone deacetylase complex, catalytic component HDA1 [Pseudozyma
antarctica T-34]
Length = 725
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+A RYL + +RK+LI+D DVH
Sbjct: 217 IVRPPGHHAEPDKSMGFCFYNNVAVATRYLQQKYPQTIRKILILDWDVH 265
>gi|340718184|ref|XP_003397551.1| PREDICTED: histone deacetylase 6-like [Bombus terrestris]
Length = 1160
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + GFC+ N++A+AA+Y + V++VLIVD DVH
Sbjct: 663 HHAGENIACGFCIFNNIAIAAKYAVEFHHVKRVLIVDWDVH 703
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++A+AA ++ + K+LIVD D+H
Sbjct: 236 HHAMKSEYCGYCFFNNVAIAAEKVLSSNLASKILIVDWDIH 276
>gi|268325288|emb|CBH38876.1| conserved hypothetical protein, histone deacetylase family
[uncultured archaeon]
Length = 361
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P G GFC+ ND+A A+YL++ + ++LI+D D H
Sbjct: 138 HHAKPSFGEGFCIYNDVAFTAKYLMQEYGLTRILILDTDAH 178
>gi|390565991|ref|ZP_10246535.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390170759|emb|CCF85878.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 318
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + G GFCL N++A+AA++ I +R+V I+D DVH
Sbjct: 125 HHALQNRGMGFCLFNNIAIAAQHAIERKGLRRVAIIDWDVH 165
>gi|422301429|ref|ZP_16388797.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
gi|389790685|emb|CCI13467.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
Length = 305
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL+++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLLSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|209809743|ref|YP_002265282.1| hypothetical protein VSAL_II0998 [Aliivibrio salmonicida LFI1238]
gi|208011306|emb|CAQ81752.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 300
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+GFCL ND+ +AA + ++ + VLIVD DVH
Sbjct: 120 HHAHYDFGSGFCLFNDLVVAAHHALKQECIETVLIVDSDVHH 161
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDD 462
GDGTA + + T S HC +N+P RK S+ DV + +GT D
Sbjct: 162 GDGTATLCADKDDIITVSFHCDKNFPARKPMSNYDVPLFIGTQD 205
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHT 89
LP+I+ Y + LP HR+P+ K+ + + ++ D EP + + VH
Sbjct: 2 LPLIYHPIYSQLDLPEGHRYPIQKYQRLYQ-AIQSLHSDDRLCYFEPTALPIRDIKQVHE 60
Query: 90 KEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPT 128
YV NG + + GF WS L R T T
Sbjct: 61 TNYVDAVVNGTLPAAKMRRIGFPWSDFLIERTLTSTAGT 99
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 213 KPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+PDL+IYDAGVD H DELG LN++ G
Sbjct: 224 QPDLIIYDAGVDIHCDDELGYLNVSTKG 251
>gi|449144557|ref|ZP_21775372.1| Histone deacetylase/AcuC/AphA family protein [Vibrio mimicus CAIM
602]
gi|449080058|gb|EMB50977.1| Histone deacetylase/AcuC/AphA family protein [Vibrio mimicus CAIM
602]
Length = 306
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDV 545
HHA D G+GFCL ND+A+AA + + V KVLI+D DV
Sbjct: 125 HHAHADFGSGFCLFNDLAIAAHFALSLSGVDKVLIIDSDV 164
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQ----LIEPQQISESIAE 85
+P+I+ Y + LP HR+P++K+ + +VR + ++ + PQ S+ +
Sbjct: 2 IPLIYHPIYSQLDLPVGHRYPINKYRLLYEDIVRQQTQNEEWREAFGFFTPQIAELSLVK 61
Query: 86 LVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASR 120
+H EYV G + + GF WS L R
Sbjct: 62 SLHDSEYVQALLEGALPAAKMRRIGFPWSEKLIER 96
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 58/175 (33%)
Query: 419 GDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQ 478
GDGTA + + + T S HC +N+P RK SD+D+ T D FLS
Sbjct: 167 GDGTATLCAEREEIITLSFHCDKNFPARKPASDMDIEFIKQTGDE----------EFLST 216
Query: 479 RSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKV 538
++ + + L P++ + AG + +D L + + I R+
Sbjct: 217 FTQVVE------MAVNLHQPDLILYD---------AGVDIHSDDELGYLSISQAAIARR- 260
Query: 539 LIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGY 593
DY++L A + IP+A V GGGY
Sbjct: 261 --------------------------------DYFMLSLAKQSNIPIACVIGGGY 283
>gi|456861311|gb|EMF79988.1| histone deacetylase family protein [Leptospira weilii serovar Topaz
str. LT2116]
Length = 203
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
I+ I L + G+G + IF +D VFTFSMH YP +K+ S LD+ ++ GTDD
Sbjct: 57 ILFIDLDLHQGNGNSVIFQEDSDVFTFSMHQENLYP-KKEKSGLDIPLEEGTDDG 110
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH+ PD GFC +ND A+A + + RK+L +DLD+HQ
Sbjct: 25 HHSMPDRAEGFCYLNDAAIAVKLYQKAYPGRKILFIDLDLHQ 66
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Y L E L I + FKPDL+ Y AG DP + D LG L LT G
Sbjct: 112 YLELLLESLRKIESDFKPDLIFYIAGADPFEGDSLGDLKLTLQG 155
>gi|409080659|gb|EKM81019.1| hypothetical protein AGABI1DRAFT_127061 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 547
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + ++K+LI+D DVH
Sbjct: 159 IVRPPGHHAEPDEHMGFCFFNNIAVAARVVQQLTPIKKILILDWDVH 205
>gi|359684037|ref|ZP_09254038.1| histone deacetylase [Leptospira santarosai str. 2000030832]
gi|410447986|ref|ZP_11302074.1| histone deacetylase family protein [Leptospira sp. Fiocruz LV3954]
gi|418744203|ref|ZP_13300559.1| histone deacetylase family protein [Leptospira santarosai str.
CBC379]
gi|418751647|ref|ZP_13307929.1| histone deacetylase family protein [Leptospira santarosai str.
MOR084]
gi|421111560|ref|ZP_15572034.1| histone deacetylase family protein [Leptospira santarosai str. JET]
gi|409967950|gb|EKO35765.1| histone deacetylase family protein [Leptospira santarosai str.
MOR084]
gi|410018191|gb|EKO80235.1| histone deacetylase family protein [Leptospira sp. Fiocruz LV3954]
gi|410794654|gb|EKR92554.1| histone deacetylase family protein [Leptospira santarosai str.
CBC379]
gi|410802969|gb|EKS09113.1| histone deacetylase family protein [Leptospira santarosai str. JET]
gi|456876209|gb|EMF91332.1| histone deacetylase family protein [Leptospira santarosai str.
ST188]
Length = 313
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L LS N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 99 NSGITLADALLSGTIKNGFSLLRPPGHHAERNRIMGFCILNNVAITARYLQKNGF-KKIF 157
Query: 540 IVDLDVH 546
I+D DVH
Sbjct: 158 IIDWDVH 164
>gi|426197573|gb|EKV47500.1| hypothetical protein AGABI2DRAFT_118070 [Agaricus bisporus var.
bisporus H97]
Length = 707
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + ++K+LI+D DVH
Sbjct: 214 IVRPPGHHAEPDEHMGFCFFNNIAVAARVVQQLTPIKKILILDWDVH 260
>gi|386284480|ref|ZP_10061702.1| acetoin utilization protein [Sulfurovum sp. AR]
gi|385344765|gb|EIF51479.1| acetoin utilization protein [Sulfurovum sp. AR]
Length = 307
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P GFCL N++A+AARY G +KV+IVD DVH
Sbjct: 121 HHARPAQAMGFCLFNNIAIAARYAQSIG-YKKVMIVDFDVHH 161
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 202 KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG-----ECISSSARI 249
+ LP ++ F PD+++ AG D H+ D L +LN+T G CI SA +
Sbjct: 223 ENDLPSLVKDFNPDIILVSAGYDLHESDPLAQLNITTEGIRDIVRCILDSADV 275
>gi|399066211|ref|ZP_10748296.1| deacetylase, histone deacetylase/acetoin utilization protein
[Novosphingobium sp. AP12]
gi|398028531|gb|EJL22039.1| deacetylase, histone deacetylase/acetoin utilization protein
[Novosphingobium sp. AP12]
Length = 132
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG-----ECISSSARISS 251
Y LK L G L F+PDL++ A VD H D LG+L LTD G E +S +AR S
Sbjct: 41 YLDILKRTLTGALDDFRPDLILLQASVDAHVDDRLGRLALTDAGLVERDEIVSHAARQRS 100
>gi|383825469|ref|ZP_09980618.1| histone deacetylase superfamily protein [Mycobacterium xenopi
RIVM700367]
gi|383334761|gb|EID13196.1| histone deacetylase superfamily protein [Mycobacterium xenopi
RIVM700367]
Length = 343
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA PD GFCL+ ++A+AAR+ +++VL+VD DVH
Sbjct: 120 RPPGHHAMPDRAMGFCLLGNVAIAARHAQNRYGIQRVLVVDYDVHH 165
>gi|337293697|emb|CCB91684.1| uncharacterized protein slr0245 [Waddlia chondrophila 2032/99]
Length = 318
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G GFCL N+ A+ ARY + + KV I+D DVH
Sbjct: 130 HHAESDQGMGFCLFNNAAVGARYAQTYKEIEKVAIIDWDVH 170
>gi|218246192|ref|YP_002371563.1| histone deacetylase superfamily protein [Cyanothece sp. PCC 8801]
gi|218166670|gb|ACK65407.1| histone deacetylase superfamily [Cyanothece sp. PCC 8801]
Length = 312
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + G GFCL ++ A+AA Y + H V++V I+D DVH
Sbjct: 130 HHAIKETGMGFCLFSNAAIAAYYSLEHSQVKRVAILDWDVH 170
>gi|392593606|gb|EIW82931.1| histone deacetylase clr3 [Coniophora puteana RWD-64-598 SS2]
Length = 670
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + +R++LI+D DVH
Sbjct: 172 IVRPPGHHAEPDEHMGFCFFNNVAVAARVVQQLTPIRRILILDWDVH 218
>gi|341884216|gb|EGT40151.1| hypothetical protein CAEBREN_23214 [Caenorhabditis brenneri]
Length = 1054
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA +GFC+ N++A+AA+Y R +++VLI+D DVH
Sbjct: 555 IVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKIKRVLILDWDVH 601
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 475 FLSQRSEKMRNNGIF----LFLLRLSDPEINRFST-----HHAFPDHGAGFCLMNDMALA 525
+++++S+K +G+ L +++ N F+ HHA D+ +GFC+ N+ + A
Sbjct: 105 YMTEKSQKAARDGVACVRELTNRIMANEASNGFAIIRPPGHHADRDNPSGFCIYNNASQA 164
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
A +G R +LIVDLDVH
Sbjct: 165 AEEAFFNGAER-ILIVDLDVH 184
>gi|297621481|ref|YP_003709618.1| histone deacetylase [Waddlia chondrophila WSU 86-1044]
gi|297376782|gb|ADI38612.1| histone deacetylase family protein [Waddlia chondrophila WSU
86-1044]
Length = 318
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D G GFCL N+ A+ ARY + + KV I+D DVH
Sbjct: 130 HHAESDQGMGFCLFNNAAVGARYAQTYKEIEKVAIIDWDVH 170
>gi|357625415|gb|EHJ75870.1| putative histone deacetylase 7A [Danaus plexippus]
Length = 906
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 446 RKQCSDLDVAIDVGTDDA----GNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEIN 501
R C L V D DA R A + ++ + NG +
Sbjct: 542 RLACGGLGVDADTAFSDAHTPPAARLAAGALIDLATRTATNELRNGFAIV---------- 591
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA P+ GFC N++A+AAR L ++++LIVD DVH
Sbjct: 592 RPPGHHAEPNQAMGFCFFNNVAIAARILHTRLGLQRILIVDWDVH 636
>gi|294497858|ref|YP_003561558.1| histone deacetylase family protein [Bacillus megaterium QM B1551]
gi|294347795|gb|ADE68124.1| histone deacetylase family protein [Bacillus megaterium QM B1551]
Length = 373
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSLTVLSSC 563
HHA D GFC N++A+ A Y I H +++V I+D DVH T+ I VL
Sbjct: 141 HHASSDQAMGFCFYNNVAVGAAYAIEHYGLKRVAILDWDVHHGNGTQDIFYERDDVL--- 197
Query: 564 VPGLYMRDYYVLDT------------AISAGIPVATVTG 590
V ++ DY+ L++ + IPV ++TG
Sbjct: 198 VISIHEEDYFPLESGQVYEIGQGKGEGYNVNIPVPSLTG 236
>gi|341894557|gb|EGT50492.1| hypothetical protein CAEBREN_16084 [Caenorhabditis brenneri]
Length = 1061
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA +GFC+ N++A+AA+Y R +++VLI+D DVH
Sbjct: 562 IVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKIKRVLILDWDVH 608
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 454 VAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIF----LFLLRLSDPEINRFST---- 505
+ I+ T + N+ +++++S+K +G+ L +++ N F+
Sbjct: 84 MEIENKTQEEINKECEKFDSIYMTEKSQKAARDGVACVRELTNRIMANEASNGFAIIRPP 143
Query: 506 -HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D+ +GFC+ N+ + AA +G R +LIVDLDVH
Sbjct: 144 GHHADRDNPSGFCIYNNASQAAEEAFFNGAER-ILIVDLDVH 184
>gi|308478251|ref|XP_003101337.1| hypothetical protein CRE_13460 [Caenorhabditis remanei]
gi|308263238|gb|EFP07191.1| hypothetical protein CRE_13460 [Caenorhabditis remanei]
Length = 524
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSLTVLSSC 563
HHA +GFC+ N++A+AA+Y R +++LI+D DVH T+ I V+
Sbjct: 59 HHASASKSSGFCIFNNVAVAAKYAQRRYKAKRILILDWDVHHGNGTQEIFYEDANVMYMS 118
Query: 564 V---------PGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
+ P +DY+ + G+ V G DI+ Q II
Sbjct: 119 IHRHDKGNFYPVGEPKDYFDVGEGAGEGMSVNVPFSGAQMGDIEYQMAFQRII 171
>gi|307719478|ref|YP_003875010.1| histone deacetylase superfamily protein [Spirochaeta thermophila
DSM 6192]
gi|306533203|gb|ADN02737.1| histone deacetylase superfamily [Spirochaeta thermophila DSM 6192]
Length = 341
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPV----PSLTVLS 561
HHA G GFC++ND+ +A R L+ G +R+ +VD+DVH+ + + PS+ LS
Sbjct: 143 HHAHAGFGHGFCVINDVVIALRRLMAEGRIRRAWVVDVDVHKGDGTAALTKDDPSIATLS 202
>gi|301612382|ref|XP_002935701.1| PREDICTED: histone deacetylase 4 [Xenopus (Silurana) tropicalis]
Length = 974
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEIN------RFSTHHAFPDHGAGFCLMNDMALA 525
W S + + + +++ E+ R HHA P GFC N +A+A
Sbjct: 647 WNELHSSNAARWAAGSVIDLAFKVASRELKNGFALVRPPGHHADPSTAMGFCFFNSVAIA 706
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
A+ L VRK+LIVD DVH
Sbjct: 707 AKQLQLRRDVRKILIVDWDVH 727
>gi|333919422|ref|YP_004493003.1| putative acetoin utilization protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481643|gb|AEF40203.1| Putative acetoin utilization protein [Amycolicicoccus subflavus
DQS3-9A1]
Length = 418
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P++ AGFC+ ND A+A +L+ HG R + +D+DVH
Sbjct: 143 HHAMPNYAAGFCIYNDCAIAISWLLDHGYTR-IAYIDVDVHH 183
>gi|328717398|ref|XP_001942814.2| PREDICTED: histone deacetylase 6-like [Acyrthosiphon pisum]
Length = 733
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA +G+C +N++A+A +YL+ ++K+LIVD D+H
Sbjct: 131 HHAMESEYSGYCFINNVAIATQYLLDKTAIQKILIVDWDIH 171
>gi|428221982|ref|YP_007106152.1| deacetylase [Synechococcus sp. PCC 7502]
gi|427995322|gb|AFY74017.1| deacetylase, histone deacetylase/acetoin utilization protein
[Synechococcus sp. PCC 7502]
Length = 311
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 474 TFLSQRSEKMRNNGIFLFL------LRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALA 525
T LSQ S ++ + +L L+ P ++R HHA D G GFC+ N+ A+A
Sbjct: 91 TVLSQNSYQVAQLAVSAWLDGVDQVLKSDKPVFILSRPPGHHAVRDSGMGFCIFNNGAIA 150
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
A Y + V +V I+D DVH
Sbjct: 151 ANYALEQYGVERVAILDWDVH 171
>gi|356511847|ref|XP_003524633.1| PREDICTED: histone deacetylase 5-like [Glycine max]
Length = 656
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVH--QHTRSIPVPSLTVL 560
HHA + GFCL N++A+AARYL+ V+K+LIVD DVH T+ + VL
Sbjct: 149 HHAEQNEAMGFCLFNNVAVAARYLLDERPELGVKKILIVDWDVHHGNGTQKMFWNDSRVL 208
Query: 561 ---------SSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
S P Y ++ AG + G C D D A I+
Sbjct: 209 FFSVHRHEFGSFYPANDDGFYTMIGEGAGAGYNINVPWENGRCGDADYFAVWDHIL 264
>gi|393721715|ref|ZP_10341642.1| histone deacetylase [Sphingomonas echinoides ATCC 14820]
Length = 308
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 504 STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+HHA GAG+C++ND+A+AA L R+VL+VD DVHQ
Sbjct: 115 GSHHALAATGAGYCVLNDLAIAAVRLAEED-ARRVLVVDCDVHQ 157
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 88/235 (37%), Gaps = 53/235 (22%)
Query: 52 SKFSKTFNYLVRD--KVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQKVT 109
S+ SK N +RD + + + EP + E VH +YV + + ++++
Sbjct: 20 SQLSK--NAAIRDLLRAHGAAIEWHEPAAMPLRWLEAVHDPDYVAEVLAARVPREKERRI 77
Query: 110 GFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA---------------VLAD 154
GF + +A+R P T +L L F +A VL D
Sbjct: 78 GFAVTPSVAARAAVVPGGT-----WLAGKLALERGFAANSAGGSHHALAATGAGYCVLND 132
Query: 155 LICIAVYLTFFLQRRPVFFDIAAVLADLIHFMV----GINTQPV---------------- 194
L AV L RR + D D + GI T +
Sbjct: 133 LAIAAVRLAEEDARRVLVVDCDVHQGDGTAALTAGHPGIATYSIHAEKNFPARKARSTRD 192
Query: 195 ---------SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y A L E + +L +++PDL++Y AGVDP D LG+L LT G
Sbjct: 193 VALPDGTGDAAYLAALSETVLPMLDEYRPDLILYQAGVDPLADDRLGRLALTPKG 247
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDA 463
+ GDGTA + P + T+S+H +N+P RK S DVA+ GT DA
Sbjct: 156 HQGDGTAALTAGHPGIATYSIHAEKNFPARKARSTRDVALPDGTGDA 202
>gi|195478791|ref|XP_002100654.1| GE17180 [Drosophila yakuba]
gi|194188178|gb|EDX01762.1| GE17180 [Drosophila yakuba]
Length = 1136
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA D GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 668 RPPGHHAEQDQPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 712
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALAA++ + ++++LI+D DVH Q T+ P
Sbjct: 239 IIRPPGHHAMKAEFNGYCFFNNVALAAQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 298
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG------IPVATVTGGGYCADIDQL 600
+ S S P L+ DY+ + + G + +T G Y A QL
Sbjct: 299 RVVYFSIHRFEHGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQL 356
>gi|421863552|ref|ZP_16295248.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378990|emb|CBX22443.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 357
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 180 ADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNL 236
++++H + T V+ +A ++ LPG LA FKP+LV+ AG D H+ DE G+LNL
Sbjct: 225 SNMVHLPLLPGTGSVAFREAVRRQWLPG-LAAFKPELVLLSAGFDAHRSDESGRLNL 280
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA GFCL+N++A A Y + + ++ ++D DVH
Sbjct: 147 HHAKSGKAGGFCLLNNVAAGAMYALAEYRLNRIAVIDFDVH 187
>gi|302525553|ref|ZP_07277895.1| acetoin dehydrogenase [Streptomyces sp. AA4]
gi|302434448|gb|EFL06264.1| acetoin dehydrogenase [Streptomyces sp. AA4]
Length = 417
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 489 FLFLLRLSDPEINRF-----STHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDL 543
L +++D E+ R HHA DH +GFC+ ND A+A +L+ HG R + VD
Sbjct: 133 LLAARKIADGEVRRAVNIAGGLHHAMRDHASGFCIYNDCAIAISWLLDHGFDR-IAYVDT 191
Query: 544 DVHQ 547
DVH
Sbjct: 192 DVHH 195
>gi|219119167|ref|XP_002180350.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408607|gb|EEC48541.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 534
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC +N +A+AARY I G KVLI+D D+H
Sbjct: 176 RPPGHHACQHREMGFCFLNSVAVAARYAIEQGHATKVLILDWDIH 220
>gi|358444918|ref|ZP_09155534.1| putative acetoin utilization protein AcuC [Corynebacterium casei
UCMA 3821]
gi|356609149|emb|CCE53754.1| putative acetoin utilization protein AcuC [Corynebacterium casei
UCMA 3821]
Length = 372
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAFPD +GFC+ ND A+A +L+ + + +V +D D H
Sbjct: 124 HHAFPDSMSGFCMYNDAAIAITWLLENTNIERVAYIDFDAHH 165
>gi|433605247|ref|YP_007037616.1| hypothetical protein BN6_34450 [Saccharothrix espanaensis DSM
44229]
gi|407883100|emb|CCH30743.1| hypothetical protein BN6_34450 [Saccharothrix espanaensis DSM
44229]
Length = 548
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC++ ++A+A R + R V +V +VD+DVH
Sbjct: 323 HHAVPDSGMGFCMLANIAIALRAVRRTHNVARVAVVDIDVH 363
>gi|194894640|ref|XP_001978099.1| GG17876 [Drosophila erecta]
gi|190649748|gb|EDV47026.1| GG17876 [Drosophila erecta]
Length = 1130
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N++A+AA+Y IR + +VLIVD DVH
Sbjct: 664 HHAEQDQPHGFCIFNNVAIAAQYAIRDFGLERVLIVDWDVH 704
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSI--PVP 555
I R HHA G+C N++ALAA++ + ++++LI+D DVH Q T+ P
Sbjct: 231 IIRPPGHHAMKAEYNGYCFFNNVALAAQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDP 290
Query: 556 SLTVLS-------SCVPGLYMRDYYVLDTAISAG----IPVAT--VTGGGYCADIDQL 600
+ S S P L DY+ + G +P+ +T G Y A QL
Sbjct: 291 RVVYFSIHRFEHGSFWPHLQESDYHAIGAGAGTGYNFNVPLNALGMTNGDYLAIFQQL 348
>gi|9759454|dbj|BAB10370.1| unnamed protein product [Arabidopsis thaliana]
Length = 1108
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVHQHTRSIPV----PSLT 558
HHA D GFCL N++A+AA +L+ V+K+LIVD DVH + + P +
Sbjct: 833 HHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVL 892
Query: 559 VLS-------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTII 607
S P DY ++ G + G C D D LA I+
Sbjct: 893 FFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHIL 948
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVH 546
HHA D GFCL N++A+AA +L+ V+K+LIVD D+H
Sbjct: 190 HHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIH 233
>gi|343506193|ref|ZP_08743701.1| histone deacetylase/AcuC/AphA family protein [Vibrio ichthyoenteri
ATCC 700023]
gi|342803497|gb|EGU38848.1| histone deacetylase/AcuC/AphA family protein [Vibrio ichthyoenteri
ATCC 700023]
Length = 312
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 446 RKQCSD-LDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS 504
R C D +D + A R + W L +R+ L L S
Sbjct: 67 RHHCPDYIDALLSGQLPAAKMRRIGFPWSEQLIERTLTSAGGTWLTTQLALDYGVAIHLS 126
Query: 505 T--HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G GFCL+ND+A++A+ + V +VLI+D DVH
Sbjct: 127 GGYHHAHYDFGTGFCLINDLAMSAKQALSMDHVDRVLIIDSDVHH 171
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 401 MKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGT 460
M R LI++ + + GDGTA + D + T S HC +N+P RK SD+D+A+ T
Sbjct: 156 MDHVDRVLIIDSDV--HHGDGTATMCADDERIITVSFHCDKNFPARKPHSDVDIALAKET 213
Query: 461 DDA 463
DA
Sbjct: 214 GDA 216
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 36/270 (13%)
Query: 31 LPIIHTNKY-ECTLPPNHRFPMSKFSKTFNYLVRD----KVIDKSK-----QLIEPQQIS 80
+P+I+ Y + TLP HR+P++K+ F + + + +K Q +P +S
Sbjct: 2 IPLIYHPIYSQLTLPAKHRYPINKYQLLFQAVEQKLHATSIASPAKWLNTFQFFKPCPLS 61
Query: 81 ESIAELVHTKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHV---------I 131
H +Y+ +G+ + + GF WS L R T T + +
Sbjct: 62 PETVSRHHCPDYIDALLSGQLPAAKMRRIGFPWSEQLIERTLTSAGGTWLTTQLALDYGV 121
Query: 132 AVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINT 191
A++L F L + + ++ + D ++ +H G T
Sbjct: 122 AIHLSGGYHHAHYDFGTGFCLINDLAMSAKQALSMDH----VDRVLIIDSDVHHGDGTAT 177
Query: 192 QPVSGYQ-ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSA--- 247
+ T+ H KP + VD E G DH + +A
Sbjct: 178 MCADDERIITVSFHCDKNFPARKP-----HSDVDIALAKETGDAEFLDHFYSVVETAVNV 232
Query: 248 ----RISSEAGVDPHQHDELGKLNLTDHGV 273
I +AGVD H DELG N++ G+
Sbjct: 233 YQPDLILYDAGVDIHCDDELGYFNVSTQGI 262
>gi|269215001|ref|ZP_06158971.1| histone deacetylase family protein [Neisseria lactamica ATCC 23970]
gi|269208543|gb|EEZ74998.1| histone deacetylase family protein [Neisseria lactamica ATCC 23970]
Length = 269
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 180 ADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNL 236
+++H + T V+ +A ++ LPG LA FKP+LV+ AG D H+ DE G+LNL
Sbjct: 124 GNMVHLPLPPGTGSVAFREAVRRQWLPG-LAAFKPELVLLSAGFDAHRSDESGRLNL 179
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA GFCL+N++A A Y + + ++ I+D DVH
Sbjct: 46 HHAKSGKAGGFCLLNNVAAGAMYALAEYRLNRIAIIDFDVH 86
>gi|197123911|ref|YP_002135862.1| histone deacetylase [Anaeromyxobacter sp. K]
gi|196173760|gb|ACG74733.1| histone deacetylase superfamily [Anaeromyxobacter sp. K]
Length = 336
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ--HTRSI--PVPSL 557
R HHA+ D G G+CL+N++A+AAR + G+ R+VL+VD DVH T+SI P++
Sbjct: 129 RPPGHHAWADRGGGYCLLNNVAIAARAVQAAGLARRVLVVDWDVHHCDGTQSIFWEDPAV 188
Query: 558 TVLS 561
VLS
Sbjct: 189 YVLS 192
>gi|71008885|ref|XP_758249.1| hypothetical protein UM02102.1 [Ustilago maydis 521]
gi|46097924|gb|EAK83157.1| hypothetical protein UM02102.1 [Ustilago maydis 521]
Length = 727
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLI-RHGIVRKVLIVDLDVH 546
I R HHA P GFC N++A+A R ++ RH ++KVLI+D DVH
Sbjct: 210 IVRPPGHHAEPQKSMGFCFFNNVAVATRVVLRRHAHIKKVLILDWDVH 257
>gi|113866835|ref|YP_725324.1| histone deacetylase family deacetylase [Ralstonia eutropha H16]
gi|113525611|emb|CAJ91956.1| Deacetylase, histone deacetylase family [Ralstonia eutropha H16]
Length = 307
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA PD GFC N++A+AAR+ +R + +V I+D DVH
Sbjct: 121 RPPGHHAEPDRAMGFCFYNNVAIAARHALRAHGLERVAIIDFDVHH 166
>gi|170117317|ref|XP_001889846.1| histone deacetylase complex protein [Laccaria bicolor S238N-H82]
gi|164635186|gb|EDQ99497.1| histone deacetylase complex protein [Laccaria bicolor S238N-H82]
Length = 705
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + ++K++I+D DVH
Sbjct: 170 IVRPPGHHAEPDEHMGFCFFNNVAVAARVVQQLTKIKKIMILDWDVH 216
>gi|397697645|ref|YP_006535528.1| histone deacetylase superfamily, partial [Pseudomonas putida
DOT-T1E]
gi|397334375|gb|AFO50734.1| histone deacetylase superfamily [Pseudomonas putida DOT-T1E]
Length = 102
Score = 47.8 bits (112), Expect = 0.020, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ Y + + L +L ++PDLV+YDAGVD H+ D LG L LTD G
Sbjct: 4 AAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHKDDALGYLQLTDAG 49
Score = 40.4 bits (93), Expect = 3.1, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHV 614
G+ RD VL + IPV V GGGY D LA+R I+H +A V
Sbjct: 49 GVAARDEAVLRHCLGRDIPVMGVIGGGYSKDRTALARRHGILHHSAARV 97
>gi|301630492|ref|XP_002944351.1| PREDICTED: histone deacetylase 6 [Xenopus (Silurana) tropicalis]
Length = 1165
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA D G+C+ N +A+AARY R ++VLIVD DVH
Sbjct: 206 RPPGHHAHVDQMNGYCMFNQLAIAARYAQRTYGAKRVLIVDWDVH 250
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR-------KVLIVDLDVH 546
I R HHA P GFC N +ALAARY R +R +V+I+D DVH
Sbjct: 605 IVRPPGHHAEPAEACGFCFFNTVALAARYAQR---LRSRSEDPLRVMILDWDVH 655
>gi|443921209|gb|ELU40937.1| histone deacetylase complex protein [Rhizoctonia solani AG-1 IA]
Length = 848
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+A R + V++VLI+D DVH
Sbjct: 193 IVRPPGHHAEPDEHMGFCFYNNVAVATRVVFNETPVKRVLILDWDVH 239
>gi|22327994|ref|NP_200914.2| histone deacetylase 5 [Arabidopsis thaliana]
gi|75247631|sp|Q8RX28.1|HDA5_ARATH RecName: Full=Histone deacetylase 5
gi|20259320|gb|AAM13986.1| putative histone deacetylase [Arabidopsis thaliana]
gi|21539579|gb|AAM53342.1| histone deacetylase-like protein [Arabidopsis thaliana]
gi|23197730|gb|AAN15392.1| histone deacetylase-like protein [Arabidopsis thaliana]
gi|332010034|gb|AED97417.1| histone deacetylase 5 [Arabidopsis thaliana]
Length = 660
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVHQHTRSIPV-- 554
I R HHA D GFCL N++A+AA +L+ V+K+LIVD DVH + +
Sbjct: 151 IVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFW 210
Query: 555 --PSLTVLS-------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQT 605
P + S P DY ++ G + G C D D LA
Sbjct: 211 KDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDH 270
Query: 606 II 607
I+
Sbjct: 271 IL 272
>gi|334188535|ref|NP_001190583.1| histone deacetylase 5 [Arabidopsis thaliana]
gi|332010035|gb|AED97418.1| histone deacetylase 5 [Arabidopsis thaliana]
Length = 664
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVHQHTRSIPV-- 554
I R HHA D GFCL N++A+AA +L+ V+K+LIVD DVH + +
Sbjct: 151 IVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFW 210
Query: 555 --PSLTVLS-------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQT 605
P + S P DY ++ G + G C D D LA
Sbjct: 211 KDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDH 270
Query: 606 II 607
I+
Sbjct: 271 IL 272
>gi|241662473|ref|YP_002980833.1| histone deacetylase superfamily protein [Ralstonia pickettii 12D]
gi|309781055|ref|ZP_07675793.1| histone deacetylase/AcuC/AphA family protein [Ralstonia sp.
5_7_47FAA]
gi|404394032|ref|ZP_10985836.1| hypothetical protein HMPREF0989_02642 [Ralstonia sp. 5_2_56FAA]
gi|240864500|gb|ACS62161.1| histone deacetylase superfamily [Ralstonia pickettii 12D]
gi|308920121|gb|EFP65780.1| histone deacetylase/AcuC/AphA family protein [Ralstonia sp.
5_7_47FAA]
gi|348614282|gb|EGY63834.1| hypothetical protein HMPREF0989_02642 [Ralstonia sp. 5_2_56FAA]
Length = 307
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA P GFC N++A+AAR+ + H +++V IVD DVH
Sbjct: 121 RPPGHHAEPGRAMGFCFFNNVAVAARHALEHHGLQRVAIVDFDVHH 166
>gi|339324972|ref|YP_004684665.1| deacetylase [Cupriavidus necator N-1]
gi|338165129|gb|AEI76184.1| deacetylase histone deacetylase family [Cupriavidus necator N-1]
Length = 307
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA PD GFC N++A+AAR+ +R + +V I+D DVH
Sbjct: 121 RPPGHHAEPDRAMGFCFYNNVAIAARHALRAHGLERVAIIDFDVHH 166
>gi|393906996|gb|EJD74475.1| hypothetical protein LOAG_18214 [Loa loa]
Length = 396
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 160 VYLTFFLQRRPVFFDIAA--VLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLV 217
VY+ R +D+ A + +H VG TQ Y + L +L +L++F+PD++
Sbjct: 265 VYILDMFNSRIYPYDLRARRAIKRSVHLHVG--TQDAE-YLSLLSSNLEDVLSEFRPDII 321
Query: 218 IYDAGVDPHQHDELGKLNLTDHG-----ECISSSAR-------ISSEAGVDPHQHDELGK 265
+Y+AG D + D LG L+++ G E + AR + G PH H+ + K
Sbjct: 322 VYNAGTDCLRGDPLGLLSISSKGIRKRDEIVFKMARDRHIPVVMLLSGGYMPHTHEVIAK 381
Query: 266 --LNLTDHGVKYILN 278
LNL D K +LN
Sbjct: 382 SILNLYD---KNLLN 393
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA G GFC+ D+ LA +L ++ K +IVDLD HQ
Sbjct: 210 HHASRSKGGGFCIYADITLALTFLFSSQLISKAVIVDLDAHQ 251
>gi|296119939|ref|ZP_06838493.1| acetoin utilization protein AcuC [Corynebacterium ammoniagenes DSM
20306]
gi|295967093|gb|EFG80364.1| acetoin utilization protein AcuC [Corynebacterium ammoniagenes DSM
20306]
Length = 372
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAFPD AGFC+ ND A+A +L+ + ++V +D D H
Sbjct: 124 HHAFPDSMAGFCMYNDAAIAITWLLNNTEAQRVAYIDFDAHH 165
>gi|359426187|ref|ZP_09217274.1| putative acetoin utilization protein [Gordonia amarae NBRC 15530]
gi|358238664|dbj|GAB06856.1| putative acetoin utilization protein [Gordonia amarae NBRC 15530]
Length = 377
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P+ AGFCL ND+A+A +L+ + +++V +D+DVH
Sbjct: 108 HHAMPESAAGFCLYNDVAVAISWLLDNTDIQRVAYIDVDVHH 149
>gi|421107226|ref|ZP_15567781.1| histone deacetylase family protein [Leptospira kirschneri str. H2]
gi|410007745|gb|EKO61431.1| histone deacetylase family protein [Leptospira kirschneri str. H2]
Length = 264
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 41 SWISAYSAA-----NSGIILSESLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 95
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
ARYL +G +K+ I+D DVH
Sbjct: 96 ARYLQNNG-YKKIFIIDWDVH 115
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F PD+V+ AG D H+ D LG +N+T G
Sbjct: 165 QANSGNQAYMQKFKEIVVPTMERFDPDIVLISAGFDAHKDDPLGGMNITTKG 216
>gi|428320012|ref|YP_007117894.1| histone deacetylase superfamily [Oscillatoria nigro-viridis PCC
7112]
gi|428243692|gb|AFZ09478.1| histone deacetylase superfamily [Oscillatoria nigro-viridis PCC
7112]
Length = 314
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA PD G GFC+ + A+AA Y + + +++V I+D DVH
Sbjct: 123 HHALPDEGMGFCIFCNAAIAAIYALTNENIKRVGILDWDVH 163
>gi|321460654|gb|EFX71695.1| hypothetical protein DAPPUDRAFT_308757 [Daphnia pulex]
Length = 357
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC N+ ALAA+Y I + + ++LIVD D+H
Sbjct: 122 HHAESDEAFGFCYFNNTALAAKYAIENHQLERILIVDWDIH 162
>gi|418686823|ref|ZP_13247987.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418741677|ref|ZP_13298051.1| histone deacetylase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089968|ref|ZP_15550769.1| histone deacetylase family protein [Leptospira kirschneri str.
200802841]
gi|410001231|gb|EKO51845.1| histone deacetylase family protein [Leptospira kirschneri str.
200802841]
gi|410738530|gb|EKQ83264.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410751125|gb|EKR08104.1| histone deacetylase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 278
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 55 SWISAYSAA-----NSGIILSESLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 109
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
ARYL +G +K+ I+D DVH
Sbjct: 110 ARYLQNNG-YKKIFIIDWDVH 129
>gi|117927455|ref|YP_872006.1| histone deacetylase superfamily protein [Acidothermus
cellulolyticus 11B]
gi|117647918|gb|ABK52020.1| histone deacetylase superfamily [Acidothermus cellulolyticus 11B]
Length = 392
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P+ +GFC+ ND A A R+L+ HG +V VD+DVH
Sbjct: 129 HHAMPNAASGFCVYNDPAAAIRWLLDHG-AERVAYVDIDVHH 169
>gi|312091972|ref|XP_003147172.1| histone deacetylase 11 [Loa loa]
Length = 317
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 160 VYLTFFLQRRPVFFDIAA--VLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLV 217
VY+ R +D+ A + +H VG TQ Y + L +L +L++F+PD++
Sbjct: 186 VYILDMFNSRIYPYDLRARRAIKRSVHLHVG--TQDAE-YLSLLSSNLEDVLSEFRPDII 242
Query: 218 IYDAGVDPHQHDELGKLNLTDHG-----ECISSSAR-------ISSEAGVDPHQHDELGK 265
+Y+AG D + D LG L+++ G E + AR + G PH H+ + K
Sbjct: 243 VYNAGTDCLRGDPLGLLSISSKGIRKRDEIVFKMARDRHIPVVMLLSGGYMPHTHEVIAK 302
Query: 266 --LNLTDHGVKYILN 278
LNL D K +LN
Sbjct: 303 SILNLYD---KNLLN 314
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA G GFC+ D+ LA +L ++ K +IVDLD HQ
Sbjct: 131 HHASRSKGGGFCIYADITLALTFLFSSQLISKAVIVDLDAHQ 172
>gi|220918680|ref|YP_002493984.1| histone deacetylase superfamily protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956534|gb|ACL66918.1| histone deacetylase superfamily [Anaeromyxobacter dehalogenans
2CP-1]
Length = 324
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ--HTRSI--PVPSL 557
R HHA+ D G G+CL+N++A+AAR + G+ R+VL+VD DVH T+SI P++
Sbjct: 129 RPPGHHAWADRGGGYCLLNNVAIAARAVQAAGLARRVLVVDWDVHHCDGTQSIFWEDPAV 188
Query: 558 TVLS 561
VLS
Sbjct: 189 YVLS 192
>gi|386811556|ref|ZP_10098781.1| histone deacetylase [planctomycete KSU-1]
gi|386403826|dbj|GAB61662.1| histone deacetylase [planctomycete KSU-1]
Length = 311
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P G GFCL N++A+AA+Y+ + ++ I+D DVH
Sbjct: 123 HHATPARGMGFCLFNNVAVAAKYIQSKYKLERIFIIDWDVHH 164
>gi|401406263|ref|XP_003882581.1| hypothetical protein NCLIV_023370 [Neospora caninum Liverpool]
gi|325116996|emb|CBZ52549.1| hypothetical protein NCLIV_023370 [Neospora caninum Liverpool]
Length = 2486
Score = 47.4 bits (111), Expect = 0.023, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLI-RHGIVRKVLIVDLDVHQ 547
I R HHA + AGFC+ N++ALAA YL+ +HG+ R V I+D DVH
Sbjct: 676 IIRPPGHHACSNEAAGFCIYNNVALAANYLLTKHGLSR-VAILDWDVHH 723
>gi|116328827|ref|YP_798547.1| histone deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331736|ref|YP_801454.1| histone deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116121571|gb|ABJ79614.1| Histone deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116125425|gb|ABJ76696.1| Histone deacetylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 317
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L +S N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 99 NSGITLADALISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGF-KKIF 157
Query: 540 IVDLDVH 546
I+D DVH
Sbjct: 158 IIDWDVH 164
>gi|418697320|ref|ZP_13258313.1| histone deacetylase family protein [Leptospira kirschneri str. H1]
gi|409954822|gb|EKO13770.1| histone deacetylase family protein [Leptospira kirschneri str. H1]
Length = 278
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 55 SWISAYSAA-----NSGIILSESLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 109
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
ARYL +G +K+ I+D DVH
Sbjct: 110 ARYLQNNG-YKKIFIIDWDVH 129
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 192 QPVSGYQATL---KEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
Q SG QA + KE + + +F PD+V+ AG D H+ D LG +N+T G
Sbjct: 179 QANSGNQAYMQKFKEIVVPTMERFDPDIVLISAGFDAHKDDPLGGMNITTKG 230
>gi|418720583|ref|ZP_13279780.1| histone deacetylase family protein [Leptospira borgpetersenii str.
UI 09149]
gi|421094501|ref|ZP_15555217.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200801926]
gi|410362563|gb|EKP13600.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200801926]
gi|410742989|gb|EKQ91733.1| histone deacetylase family protein [Leptospira borgpetersenii str.
UI 09149]
gi|456891461|gb|EMG02172.1| histone deacetylase family protein [Leptospira borgpetersenii str.
200701203]
Length = 313
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L +S N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 99 NSGITLADALISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGF-KKIF 157
Query: 540 IVDLDVHQ 547
I+D DVH
Sbjct: 158 IIDWDVHH 165
>gi|399155693|ref|ZP_10755760.1| histone deacetylase superfamily protein [SAR324 cluster bacterium
SCGC AAA001-C10]
Length = 315
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC N++ALAA +L R ++VLI D DVH
Sbjct: 124 HHAENDSAMGFCFFNNIALAAEFLTREMGFKRVLIFDFDVH 164
>gi|357405061|ref|YP_004916985.1| hypothetical protein MEALZ_1704 [Methylomicrobium alcaliphilum 20Z]
gi|351717726|emb|CCE23391.1| conserved protein of unknown function [Methylomicrobium
alcaliphilum 20Z]
Length = 315
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA PD GFCL N++A+AA Y H + K+ I+D DVH
Sbjct: 122 RPPGHHAEPDRPMGFCLFNNIAIAAEYARLHYSLGKIAIIDFDVHH 167
>gi|374340700|ref|YP_005097436.1| deacetylase [Marinitoga piezophila KA3]
gi|372102234|gb|AEX86138.1| deacetylase, histone deacetylase/acetoin utilization protein
[Marinitoga piezophila KA3]
Length = 300
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHAF + GFC+ ND+ + A+Y + G KV+I+D DVH
Sbjct: 114 HHAFENRARGFCIFNDVVIGAKYAQKKGF-SKVMIIDWDVH 153
>gi|337287253|ref|YP_004626726.1| histone deacetylase superfamily [Thermodesulfatator indicus DSM
15286]
gi|335360081|gb|AEH45762.1| histone deacetylase superfamily [Thermodesulfatator indicus DSM
15286]
Length = 347
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFCL N++ALAA Y ++ ++++LIVD D+H
Sbjct: 123 HHAEYDRAMGFCLFNNVALAAHYALKKLGLKRILIVDWDLH 163
>gi|418735717|ref|ZP_13292126.1| histone deacetylase family protein [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410748656|gb|EKR01551.1| histone deacetylase family protein [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 313
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 485 NNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVL 539
N+GI L +S N FS HHA + GFC++N++A+ ARYL ++G +K+
Sbjct: 99 NSGITLADALISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAITARYLQKNGF-KKIF 157
Query: 540 IVDLDVHQ 547
I+D DVH
Sbjct: 158 IIDWDVHH 165
>gi|399155825|ref|ZP_10755892.1| histone deacetylase superfamily protein [SAR324 cluster bacterium
SCGC AAA001-C10]
Length = 363
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA H G+C+ N++A+AA Y +R + +++I+DLD H
Sbjct: 123 HHAHSTHAMGYCIFNNVAIAANYAMREHKLDRIMIIDLDAHH 164
>gi|255722335|ref|XP_002546102.1| histone deacetylase HDA1 [Candida tropicalis MYA-3404]
gi|240136591|gb|EER36144.1| histone deacetylase HDA1 [Candida tropicalis MYA-3404]
Length = 849
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVH 546
HHA PD AGFCL +++A+AA+ ++++ VR+++IVD D+H
Sbjct: 289 HHAEPDTPAGFCLFSNVAVAAKNILKNYPESVRRIVIVDWDIH 331
>gi|148292204|dbj|BAF62919.1| putative histone deacetylase family protein [uncultured bacterium]
Length = 366
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH--QHTRSIPVPSL 557
++R HH PD GFCL+N++A+A + R G +V IVD DVH T I
Sbjct: 137 LSRPPGHHCLPDFPNGFCLLNNIAIAVQAARRAGKTERVAIVDWDVHHGNGTEHIFYDDA 196
Query: 558 TVLSSCVPGLYMRDYYVLDT--AISAGIPVATVT--------GGGY 593
VL+ L+ Y LDT A G P A ++ GGG+
Sbjct: 197 DVLTIS---LHQERNYPLDTGDAKDTGGPAAALSNLNIPLLPGGGH 239
>gi|374333861|ref|YP_005090548.1| histone deacetylase superfamily protein [Oceanimonas sp. GK1]
gi|372983548|gb|AEX99797.1| histone deacetylase superfamily protein [Oceanimonas sp. GK1]
Length = 368
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
++R HHA D G GFCL+ ++ +A R G+VR+V ++D DVH
Sbjct: 133 LSRPPGHHAEADRGMGFCLLGNIPIAIRAAQAQGLVRRVAVIDWDVH 179
>gi|432864418|ref|XP_004070312.1| PREDICTED: histone deacetylase 7-like [Oryzias latipes]
Length = 953
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 458 VGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEIN------RFSTHHAFPD 511
VG D N T+ W + + +M + R++ E+ R HHA P
Sbjct: 624 VGVD---NDTI---WNESHTSTASRMAAGSVVELAFRVAKGELKNGFAVVRPPGHHADPS 677
Query: 512 HGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ GFC N +A+AA+ L + V K+LIVD DVH
Sbjct: 678 NPMGFCYFNSVAIAAKQLQQKLSVSKILIVDWDVH 712
>gi|358336111|dbj|GAA54666.1| histone deacetylase 9 [Clonorchis sinensis]
Length = 1221
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFS-----THHAFPDHGAGFCLMNDMALA 525
W + R+ ++ + +++ EI N F+ HHA P GFC N +A+
Sbjct: 859 WNPSSTARAARLAVGQVLCLATKVAKNEIRNGFALVRPPGHHAEPGQAMGFCYFNSVAIT 918
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
A L+R +V +VLI+D D+H
Sbjct: 919 ALRLLRSQLVSRVLILDWDIH 939
>gi|425452530|ref|ZP_18832347.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
gi|389765617|emb|CCI08524.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|425442237|ref|ZP_18822492.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9717]
gi|389716835|emb|CCH98977.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9717]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|440756205|ref|ZP_20935406.1| histone deacetylase domain protein [Microcystis aeruginosa TAIHU98]
gi|440173427|gb|ELP52885.1| histone deacetylase domain protein [Microcystis aeruginosa TAIHU98]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|448730443|ref|ZP_21712751.1| HdaI-type histone deacetylase [Halococcus saccharolyticus DSM 5350]
gi|445793611|gb|EMA44183.1| HdaI-type histone deacetylase [Halococcus saccharolyticus DSM 5350]
Length = 336
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ R HHA D GFC +N+ A+AA +I G +V IVD DVH
Sbjct: 115 LGRPPGHHAVADDAMGFCFLNNAAIAAEAMIDDGRAERVAIVDWDVH 161
>gi|425468515|ref|ZP_18847528.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
gi|389884812|emb|CCI34911.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|390438178|ref|ZP_10226670.1| conserved hypothetical protein [Microcystis sp. T1-4]
gi|389838406|emb|CCI30794.1| conserved hypothetical protein [Microcystis sp. T1-4]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|254410273|ref|ZP_05024053.1| Histone deacetylase family, putative [Coleofasciculus
chthonoplastes PCC 7420]
gi|196183309|gb|EDX78293.1| Histone deacetylase family, putative [Coleofasciculus
chthonoplastes PCC 7420]
Length = 339
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA+ + G G+CL+N +A+AARY G K+L++D D+H
Sbjct: 134 HHAYSNWGHGYCLLNPLAVAARYAQMQGF-EKILMIDWDIH 173
>gi|166366746|ref|YP_001659019.1| histone deacetylase family protein [Microcystis aeruginosa
NIES-843]
gi|166089119|dbj|BAG03827.1| histone deacetylase family protein [Microcystis aeruginosa
NIES-843]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|297789218|ref|XP_002862598.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308222|gb|EFH38856.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 576
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 25/127 (19%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVHQHTRSIPV----PSLT 558
HHA D GFCL N++A+AA YL+ V+K+LIVD D+H + + P +
Sbjct: 131 HHAEADEAMGFCLFNNVAVAASYLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDPRVL 190
Query: 559 VLS------------------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQL 600
+ S S P DY ++ G + G C D D L
Sbjct: 191 IFSVHRFKVAGNAYVARYDHGSFYPAGDDGDYNMVGEGPGKGFNINVPWEQGGCGDADYL 250
Query: 601 AQRQTII 607
A I+
Sbjct: 251 AAWDHIL 257
>gi|301102851|ref|XP_002900512.1| histone deacetylase, putative [Phytophthora infestans T30-4]
gi|262101775|gb|EEY59827.1| histone deacetylase, putative [Phytophthora infestans T30-4]
Length = 370
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIR--HGIVRKVLIVDLDVH 546
+ R HHA D G GFCL+N++A+ A++L+ ++K+ IVD DVH
Sbjct: 129 LTRPPGHHAVADRGMGFCLLNNVAITAKHLLETYSSQIKKIAIVDYDVH 177
>gi|257059240|ref|YP_003137128.1| histone deacetylase [Cyanothece sp. PCC 8802]
gi|256589406|gb|ACV00293.1| Histone deacetylase [Cyanothece sp. PCC 8802]
Length = 312
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + G GFCL ++ A+AA Y + H V++V I+D DVH
Sbjct: 130 HHAIKETGMGFCLFSNAAIAAYYSLEHPQVKRVAILDWDVH 170
>gi|189220417|ref|YP_001941057.1| deacetylase [Methylacidiphilum infernorum V4]
gi|189187275|gb|ACD84460.1| Deacetylase family enzyme [Methylacidiphilum infernorum V4]
Length = 314
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + GFCL N +A+AARY + ++KV I+D DVH
Sbjct: 126 HHALANAAMGFCLFNTVAIAARYALEKHGLKKVFILDWDVH 166
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
S Y+ E + + FKPD+++ AG D H+ D LG++ LT+ G
Sbjct: 222 SHYEKAFDEKIIPAIESFKPDMILISAGFDAHKDDPLGEIYLTEQG 267
>gi|425457411|ref|ZP_18837114.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
gi|389801238|emb|CCI19573.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|425447723|ref|ZP_18827706.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
gi|389731639|emb|CCI04318.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
Length = 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|425465793|ref|ZP_18845100.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9809]
gi|389831912|emb|CCI24942.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9809]
Length = 305
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|425460812|ref|ZP_18840293.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
gi|389826457|emb|CCI23006.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
Length = 305
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|328718332|ref|XP_001945475.2| PREDICTED: histone deacetylase 4-like isoform 1 [Acyrthosiphon
pisum]
gi|328718334|ref|XP_003246454.1| PREDICTED: histone deacetylase 4-like isoform 2 [Acyrthosiphon
pisum]
Length = 1055
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA + GFC N +A+A R L + VR++LIVD DVH
Sbjct: 766 IVRPPGHHAEANQAMGFCFFNSIAVACRLLQQRQAVRRILIVDWDVH 812
>gi|425438250|ref|ZP_18818655.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
gi|389676633|emb|CCH94391.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
Length = 305
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 492 LLRLSDPE--INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+L DP + R HHA ++G GFCL ++ A+AA Y + + V+KV I+D DVH
Sbjct: 111 VLSTGDPAFILARPPGHHATSNYGMGFCLFSNAAIAAYYALENKRVQKVAILDWDVH 167
>gi|260804019|ref|XP_002596886.1| hypothetical protein BRAFLDRAFT_103129 [Branchiostoma floridae]
gi|229282147|gb|EEN52898.1| hypothetical protein BRAFLDRAFT_103129 [Branchiostoma floridae]
Length = 926
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFST-----HHAFPDHGAGFCLMNDMALA 525
W S + +M + +++ E+ N F+ HHA D GFC N +A+
Sbjct: 594 WNELHSPSALRMAAGCVIELAFKVAQGELKNGFAVVRPPGHHAEVDQAMGFCFFNSIAVT 653
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
AR L++ + KVLIVD DVH
Sbjct: 654 ARLLVQRLKLNKVLIVDWDVH 674
>gi|47847402|dbj|BAD21373.1| mFLJ00062 protein [Mus musculus]
Length = 852
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 566 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 610
>gi|418677399|ref|ZP_13238675.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|400322347|gb|EJO70205.1| histone deacetylase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
Length = 347
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 124 SWISAYSAA-----NSGIILSESLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 178
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 179 ARYLQNNG-YKKIFIIDWDVHH 199
>gi|347963763|ref|XP_310688.5| AGAP000410-PA [Anopheles gambiae str. PEST]
gi|333467046|gb|EAA06252.5| AGAP000410-PA [Anopheles gambiae str. PEST]
Length = 1004
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGI---VRKVLIVDLDVH 546
HHA D GFC N +ALAAR L+RH + +R++LIVD DVH
Sbjct: 716 HHAEADAAMGFCFFNSIALAAR-LLRHRMPHEMRRILIVDWDVH 758
>gi|347963990|ref|XP_003437019.1| AGAP000532-PB [Anopheles gambiae str. PEST]
gi|333466941|gb|EGK96427.1| AGAP000532-PB [Anopheles gambiae str. PEST]
Length = 1118
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N +A+AAR+ ++ +R+VLIVD DVH
Sbjct: 664 HHAEADTPHGFCIYNSIAVAARHAVKRYGLRRVLIVDWDVH 704
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA G+C N++A+AA++ + H +K+LIVD DVH
Sbjct: 231 ILRPPGHHAMTAEYNGYCFFNNVAIAAQHALDHLGTQKILIVDWDVH 277
>gi|308273423|emb|CBX30025.1| hypothetical protein N47_D28340 [uncultured Desulfobacterium sp.]
Length = 360
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 481 EKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLI 540
EK +NG F FL R HHA D GFCL N++A+ A+Y I + ++LI
Sbjct: 119 EKKIDNG-FAFL---------RPPGHHAEADRAMGFCLFNNIAIGAKYAIEKYNLDRILI 168
Query: 541 VDLDVHQ 547
+D D+H
Sbjct: 169 IDWDIHH 175
>gi|302680236|ref|XP_003029800.1| hypothetical protein SCHCODRAFT_78264 [Schizophyllum commune H4-8]
gi|300103490|gb|EFI94897.1| hypothetical protein SCHCODRAFT_78264 [Schizophyllum commune H4-8]
Length = 673
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ----HTRSIPVP 555
I R HHA P+ +GFC +N++A+AAR + + ++K++I+D D+H H I P
Sbjct: 153 IVRPPGHHAEPEEHSGFCFLNNVAVAARVVQQATNIKKIMILDWDIHHGNGTHRAFIDDP 212
Query: 556 SLTVLS 561
S+ +S
Sbjct: 213 SVLYIS 218
>gi|304404101|ref|ZP_07385763.1| Histone deacetylase [Paenibacillus curdlanolyticus YK9]
gi|304347079|gb|EFM12911.1| Histone deacetylase [Paenibacillus curdlanolyticus YK9]
Length = 393
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHAFPD G GFC+ ND A+A + IR ++L +D DVH
Sbjct: 137 HHAFPDRGTGFCIYNDAAIAIEH-IRSKYGSRILYIDTDVHH 177
>gi|6911184|gb|AAF31419.1|AF207749_1 histone deacetylase 7 [Mus musculus]
Length = 938
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 652 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 696
>gi|381211229|ref|ZP_09918300.1| histone deacetylase superfamily protein [Lentibacillus sp. Grbi]
Length = 368
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P G GFCL N++A+AA+Y ++++ I+D DVH
Sbjct: 140 HHAEPAEGMGFCLFNNVAIAAKYAREKYGLKRIAILDWDVH 180
>gi|347963988|ref|XP_310554.5| AGAP000532-PA [Anopheles gambiae str. PEST]
gi|333466940|gb|EAA06256.6| AGAP000532-PA [Anopheles gambiae str. PEST]
Length = 1118
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N +A+AAR+ ++ +R+VLIVD DVH
Sbjct: 664 HHAEADTPHGFCIYNSIAVAARHAVKRYGLRRVLIVDWDVH 704
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA G+C N++A+AA++ + H +K+LIVD DVH
Sbjct: 231 ILRPPGHHAMTAEYNGYCFFNNVAIAAQHALDHLGTQKILIVDWDVH 277
>gi|398339945|ref|ZP_10524648.1| acetoin-histone deacetylase [Leptospira kirschneri serovar Bim str.
1051]
gi|421130519|ref|ZP_15590713.1| histone deacetylase family protein [Leptospira kirschneri str.
2008720114]
gi|410358218|gb|EKP05399.1| histone deacetylase family protein [Leptospira kirschneri str.
2008720114]
Length = 347
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 124 SWISAYSAA-----NSGIILSESLISGTIKNGFSLLRPPGHHAEHNRIMGFCMLNNVAIT 178
Query: 526 ARYLIRHGIVRKVLIVDLDVHQ 547
ARYL +G +K+ I+D DVH
Sbjct: 179 ARYLQNNG-YKKIFIIDWDVHH 199
>gi|410899128|ref|XP_003963049.1| PREDICTED: histone deacetylase 7-like [Takifugu rubripes]
Length = 895
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 458 VGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFST-----HHAFPD 511
VG D N T+ W + + +M + R++ E+ N F+ HHA P
Sbjct: 566 VGVD---NDTI---WNESHTSTASRMAAGSVVELAFRVAKGELKNGFAVVRPPGHHADPS 619
Query: 512 HGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ GFC N +A+AA+ L V K+LIVD DVH
Sbjct: 620 NPMGFCYFNSVAIAAKQLQHKLSVSKILIVDWDVH 654
>gi|40254548|ref|NP_062518.2| histone deacetylase 7 isoform 4 [Mus musculus]
gi|30913081|sp|Q8C2B3.2|HDAC7_MOUSE RecName: Full=Histone deacetylase 7; Short=HD7; AltName:
Full=Histone deacetylase 7A; Short=HD7a
gi|34785723|gb|AAH57332.1| Histone deacetylase 7 [Mus musculus]
Length = 938
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 652 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 696
>gi|260222968|emb|CBA33065.1| hypothetical protein Csp_B17170 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 317
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARY-LIRHGIVRKVLIVDLDVHQ 547
HHA G GFC+ N++A+AARY L RHG+ R V IVD DVH
Sbjct: 135 HHACKSEGMGFCIFNNVAVAARYALERHGLQR-VAIVDFDVHH 176
>gi|410941647|ref|ZP_11373441.1| histone deacetylase family protein [Leptospira noguchii str.
2006001870]
gi|410783196|gb|EKR72193.1| histone deacetylase family protein [Leptospira noguchii str.
2006001870]
Length = 313
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 471 TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS-----THHAFPDHGAGFCLMNDMALA 525
+W++ S N+GI L +S N FS HHA + GFC++N++A+
Sbjct: 90 SWISAYSAA-----NSGITLSKSLISGTIKNGFSLLRPPGHHAGHNRIMGFCMLNNVAIT 144
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
ARYL +G +K+ I+D DVH
Sbjct: 145 ARYLQNNGF-KKIFIIDWDVH 164
>gi|337287997|ref|YP_004627469.1| histone deacetylase superfamily [Thermodesulfobacterium sp. OPB45]
gi|334901735|gb|AEH22541.1| histone deacetylase superfamily [Thermodesulfobacterium geofontis
OPF15]
Length = 350
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFCL N++A+AA Y + ++K+LIVD D+H
Sbjct: 125 HHAEKDRAMGFCLFNNVAIAAYYAKNYYGLKKILIVDWDLH 165
>gi|148672273|gb|EDL04220.1| histone deacetylase 7A, isoform CRA_b [Mus musculus]
Length = 908
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 622 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 666
>gi|148672272|gb|EDL04219.1| histone deacetylase 7A, isoform CRA_a [Mus musculus]
Length = 969
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 683 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 727
>gi|148672275|gb|EDL04222.1| histone deacetylase 7A, isoform CRA_d [Mus musculus]
Length = 932
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 646 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 690
>gi|89901305|ref|YP_523776.1| histone deacetylase superfamily protein [Rhodoferax ferrireducens
T118]
gi|89346042|gb|ABD70245.1| histone deacetylase superfamily [Rhodoferax ferrireducens T118]
Length = 315
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARY-LIRHGIVRKVLIVDLDVHQ 547
HHA D GFC N++ALAA+Y L RHG+ ++V IVD DVH
Sbjct: 133 HHACRDQAMGFCFFNNVALAAKYALERHGL-KRVAIVDFDVHH 174
>gi|298244138|ref|ZP_06967944.1| Histone deacetylase [Ktedonobacter racemifer DSM 44963]
gi|297551619|gb|EFH85484.1| Histone deacetylase [Ktedonobacter racemifer DSM 44963]
Length = 386
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARY-LIRHGIVRKVLIVDLDVH 546
HHA + GFC+ N++A+AARY L +HG+ R V+I+D DVH
Sbjct: 136 HHAVAESAMGFCIFNNVAVAARYALEKHGLER-VMIIDYDVH 176
>gi|330507266|ref|YP_004383694.1| histone deacetylase family protein [Methanosaeta concilii GP6]
gi|328928074|gb|AEB67876.1| histone deacetylase family protein [Methanosaeta concilii GP6]
Length = 339
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA P+ G GFC+ N++A+AAR+ + KVLIVD DVH
Sbjct: 119 RPPGHHAMPNRGMGFCVFNNVAIAARHAQSRDL-EKVLIVDWDVHH 163
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY +E L I +F PD+V+ AG DPH+ D LG + LT G
Sbjct: 218 EGYLMAYREILKPIAIEFSPDIVLVSAGQDPHKDDPLGGMGLTASG 263
>gi|448735068|ref|ZP_21717286.1| HdaI-type histone deacetylase [Halococcus salifodinae DSM 8989]
gi|445798937|gb|EMA49322.1| HdaI-type histone deacetylase [Halococcus salifodinae DSM 8989]
Length = 337
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
+ R HHA D GFC +N+ A+AA +I G +V I+D DVH
Sbjct: 115 LGRPPGHHAVADDAMGFCFLNNAAIAAEAMIDDGRAERVAIIDWDVH 161
>gi|26354072|dbj|BAC40666.1| unnamed protein product [Mus musculus]
Length = 916
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 630 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 674
>gi|194689096|gb|ACF78632.1| unknown [Zea mays]
gi|223975929|gb|ACN32152.1| unknown [Zea mays]
gi|414590783|tpg|DAA41354.1| TPA: histone deacetylase 6 [Zea mays]
Length = 700
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH----GIVRKVLIVDLDVH 546
HHA D GFCL N++A+AA YL+ GI +K+LIVD DVH
Sbjct: 145 HHAEHDEAMGFCLFNNVAVAANYLLNERPDLGI-KKILIVDWDVH 188
>gi|332021768|gb|EGI62119.1| Histone deacetylase 6 [Acromyrmex echinatior]
Length = 1204
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D GFC+ N++A+AA Y ++ V +VLIVD DVH
Sbjct: 692 HHAEKDIACGFCIFNNVAVAAMYAVQFYHVNRVLIVDWDVH 732
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA G+C N++ALA + + ++LIVD DVH
Sbjct: 245 HHAMKSEYCGYCFFNNVALAVEKALNFSLANRILIVDWDVH 285
>gi|324073114|ref|NP_001191204.1| histone deacetylase 7 isoform 1 [Mus musculus]
Length = 953
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 667 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 711
>gi|324073150|ref|NP_001191207.1| histone deacetylase 7 isoform 5 [Mus musculus]
Length = 916
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 630 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 674
>gi|392341654|ref|XP_003754392.1| PREDICTED: histone deacetylase 7 isoform 2 [Rattus norvegicus]
gi|392349713|ref|XP_003750451.1| PREDICTED: histone deacetylase 7 isoform 1 [Rattus norvegicus]
gi|149032186|gb|EDL87098.1| histone deacetylase 7A [Rattus norvegicus]
Length = 916
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 630 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 674
>gi|26326835|dbj|BAC27161.1| unnamed protein product [Mus musculus]
Length = 953
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 667 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 711
>gi|392341661|ref|XP_001059057.3| PREDICTED: histone deacetylase 7 isoform 1 [Rattus norvegicus]
gi|392349715|ref|XP_345869.4| PREDICTED: histone deacetylase 7 isoform 5 [Rattus norvegicus]
Length = 953
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 667 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 711
>gi|83647787|ref|YP_436222.1| deacetylase [Hahella chejuensis KCTC 2396]
gi|83635830|gb|ABC31797.1| Deacetylases, including yeast histone deacetylase and acetoin
utilization protein [Hahella chejuensis KCTC 2396]
Length = 318
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYL---IRHGIVRKVLIVDLDVHQ 547
HHAF DHG GFC +D ALA + L R G +VL++DLD H+
Sbjct: 132 HHAFRDHGEGFCFFSDAALAIQLLRAEKRLGSADEVLMIDLDAHR 176
>gi|403737303|ref|ZP_10950137.1| putative deacetylase [Austwickia chelonae NBRC 105200]
gi|403192603|dbj|GAB76907.1| putative deacetylase [Austwickia chelonae NBRC 105200]
Length = 397
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA PD +GFC+ ND A R+L+ HG +V VD+D H
Sbjct: 132 HHAMPDSASGFCVYNDAGAAIRWLLDHG-AERVAYVDVDAHH 172
>gi|359446646|ref|ZP_09236297.1| hypothetical protein P20439_2635 [Pseudoalteromonas sp. BSi20439]
gi|358039452|dbj|GAA72546.1| hypothetical protein P20439_2635 [Pseudoalteromonas sp. BSi20439]
Length = 267
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 58/195 (29%)
Query: 417 YDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFL 476
+ GDGTA I + + S+HC +N+P +KQ S+ D A+ T DA ++T L
Sbjct: 128 HQGDGTAQITQHHEQIISCSIHCEQNFPRQKQHSNYDFALPANTIDA-------EYLTTL 180
Query: 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVR 536
Q E +RL P+I ++ GA +++ L
Sbjct: 181 EQALE---------LCVRLHQPDIILYNA-------GADIYTKDELGL------------ 212
Query: 537 KVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCAD 596
DV + G+Y RD+ VL+ IP+ GGGY +
Sbjct: 213 ------FDVS-----------------LAGVYARDFAVLNFCKQRNIPLMCALGGGYQRN 249
Query: 597 IDQLAQRQTIIHRAA 611
I+ L + +AA
Sbjct: 250 INDLVSVHKQLFKAA 264
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA+ ++G+GFC+ ND+A+AA +LI VLI D DVHQ
Sbjct: 88 HHAYSNYGSGFCIFNDLAIAAAHLIATEQADTVLIFDCDVHQ 129
>gi|355572754|ref|ZP_09043820.1| histone deacetylase superfamily [Methanolinea tarda NOBI-1]
gi|354824298|gb|EHF08551.1| histone deacetylase superfamily [Methanolinea tarda NOBI-1]
Length = 359
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA GAGFC +N+MA+ R+L +H VRKVL++D D H
Sbjct: 121 RPPGHHARAGTGAGFCYLNNMAIMVRHL-QHEGVRKVLVLDWDAHH 165
>gi|324073170|ref|NP_001191208.1| histone deacetylase 7 isoform 6 [Mus musculus]
Length = 892
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 606 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 650
>gi|324073135|ref|NP_001191205.1| histone deacetylase 7 isoform 2 [Mus musculus]
Length = 946
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 660 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 704
>gi|392341674|ref|XP_003754394.1| PREDICTED: histone deacetylase 7 isoform 4 [Rattus norvegicus]
gi|392349719|ref|XP_003750453.1| PREDICTED: histone deacetylase 7 isoform 3 [Rattus norvegicus]
Length = 851
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 565 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 609
>gi|392341670|ref|XP_003754393.1| PREDICTED: histone deacetylase 7 isoform 3 [Rattus norvegicus]
gi|392349717|ref|XP_003750452.1| PREDICTED: histone deacetylase 7 isoform 2 [Rattus norvegicus]
Length = 892
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 606 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 650
>gi|343429070|emb|CBQ72644.1| related to HDA1-histone deacetylase A [Sporisorium reilianum SRZ2]
Length = 737
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIR-HGIVRKVLIVDLDVHQ 547
I R HHA P GFC N++A+A R+++R H ++KVLI+D DVH
Sbjct: 209 IVRPPGHHAEPHKSMGFCFFNNVAVATRHVMRQHDHIKKVLILDWDVHH 257
>gi|47207616|emb|CAF88355.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1260
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA D GFCL N++A+AARY V +VLIVD DVH
Sbjct: 200 RPPGHHAQKDLPNGFCLFNNVAIAARYAQTRHSVSRVLIVDWDVH 244
>gi|406888454|gb|EKD34928.1| hypothetical protein ACD_75C02122G0002, partial [uncultured
bacterium]
Length = 239
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P G GFC++N++A+ A+YL R + ++LI+D D H
Sbjct: 22 HHAEPGRGMGFCIINNVAVTAQYLRRKYHLNRILILDFDAH 62
>gi|299751193|ref|XP_002911602.1| histone deacetylase clr3 [Coprinopsis cinerea okayama7#130]
gi|298409263|gb|EFI28108.1| histone deacetylase clr3 [Coprinopsis cinerea okayama7#130]
Length = 692
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA PD GFC N++A+AAR + + ++K+LI+D DVH
Sbjct: 185 IVRPPGHHAEPDEHMGFCFFNNVAVAARVVQQLTPLKKILILDWDVH 231
>gi|324073138|ref|NP_001191206.1| histone deacetylase 7 isoform 3 [Mus musculus]
gi|26336342|dbj|BAC31856.1| unnamed protein product [Mus musculus]
Length = 944
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 658 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 702
>gi|324073184|ref|NP_001191210.1| histone deacetylase 7 isoform 8 [Mus musculus]
Length = 851
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 565 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 609
>gi|242046202|ref|XP_002460972.1| hypothetical protein SORBIDRAFT_02g038550 [Sorghum bicolor]
gi|241924349|gb|EER97493.1| hypothetical protein SORBIDRAFT_02g038550 [Sorghum bicolor]
Length = 703
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH----GIVRKVLIVDLDVH 546
HHA D GFCL N++A+AA YL+ GI +K+LIVD DVH
Sbjct: 147 HHAEHDEAMGFCLFNNVAVAANYLLNERPDLGI-KKILIVDWDVH 190
>gi|26331526|dbj|BAC29493.1| unnamed protein product [Mus musculus]
Length = 946
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 660 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 704
>gi|162458619|ref|NP_001105019.1| probable histone deacetylase 19 [Zea mays]
gi|32968028|gb|AAP92528.1|AF322918_1 HDA1 [Zea mays]
Length = 701
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH----GIVRKVLIVDLDVH 546
HHA D GFCL N++A+AA YL+ GI +K+LIVD DVH
Sbjct: 145 HHAEHDEAMGFCLFNNVAVAANYLLNERPDLGI-KKILIVDWDVH 188
>gi|405970377|gb|EKC35286.1| Histone deacetylase 6 [Crassostrea gigas]
Length = 887
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I+R HHA GFC N++A+AA+Y V+KVLIVD D+H
Sbjct: 696 ISRPPGHHAECTEAMGFCFFNNIAIAAKYAQNKYNVKKVLIVDWDIH 742
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA + GFC N++A+AA++ + + ++K+LI+D DVH
Sbjct: 219 IIRPPGHHAMTEEFNGFCFFNNVAIAAKHALENLKLKKILIIDWDVH 265
>gi|392412457|ref|YP_006449064.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfomonile tiedjei DSM 6799]
gi|390625593|gb|AFM26800.1| deacetylase, histone deacetylase/acetoin utilization protein
[Desulfomonile tiedjei DSM 6799]
Length = 345
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D GFC+ N++ + A+Y I ++++LIVD D+H
Sbjct: 124 HHALTDRAGGFCIFNNLGVTAKYAIETYGLKRILIVDWDIHH 165
>gi|47211722|emb|CAF93554.1| unnamed protein product [Tetraodon nigroviridis]
Length = 903
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEI-NRFST-----HHAFPDHGAGFCLMNDMALA 525
W + + +M + R++ E+ N F+ HHA P + GFC N +A+A
Sbjct: 513 WNESHTSTASRMAAGSVVELAFRVAKGELKNGFAVVRPPGHHADPSNPMGFCYFNSVAIA 572
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
A+ L V K+LIVD DVH
Sbjct: 573 AKQLQHKLSVSKILIVDWDVH 593
>gi|195604786|gb|ACG24223.1| histone deacetylase 6 [Zea mays]
Length = 701
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH----GIVRKVLIVDLDVH 546
HHA D GFCL N++A+AA YL+ GI +K+LIVD DVH
Sbjct: 145 HHAEHDEAMGFCLFNNVAVAANYLLNERPDLGI-KKILIVDWDVH 188
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,911,699,395
Number of Sequences: 23463169
Number of extensions: 421486040
Number of successful extensions: 1128143
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2126
Number of HSP's successfully gapped in prelim test: 960
Number of HSP's that attempted gapping in prelim test: 1116309
Number of HSP's gapped (non-prelim): 12032
length of query: 620
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 471
effective length of database: 8,863,183,186
effective search space: 4174559280606
effective search space used: 4174559280606
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)