BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16742
(620 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 92/207 (44%), Gaps = 58/207 (28%)
Query: 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTV 468
I+ + L + GDGTAFIF DP VFTFSMHC N+P +KQ SDLD+ + G DD G
Sbjct: 152 ILIVDLDVHQGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDG---- 207
Query: 469 ALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARY 528
++ L+ E LL P++ F D G
Sbjct: 208 ---YLQILAHHLED---------LLSQVKPDL-------VFYDAG--------------- 233
Query: 529 LIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATV 588
+D H R L L+ GLY R+ VL T ++AG PVA V
Sbjct: 234 --------------VDTHVGDR------LGKLAMTNTGLYRRERLVLSTCLAAGYPVACV 273
Query: 589 TGGGYCADIDQLAQRQTIIHRAATHVY 615
GGGY +I L R +++HRAA VY
Sbjct: 274 IGGGYAKNIHDLVYRHSLLHRAARDVY 300
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 31 LPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90
P+++ Y +P HRFPM KF L+ D VI + +Q+ +PQ + ELVH
Sbjct: 3 FPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVI-QPEQVYQPQLPDRAWLELVHEP 61
Query: 91 EYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRT 123
+YV + G T K Q+ G WSAG+ R T
Sbjct: 62 DYVTAYCQGTLTPKAQRRIGLPWSAGVVQRTLT 94
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEI--NRFSTHHAFPDHGAGFCLMNDM 522
R + L W + QR+ I L L THHAFP +G+GFC++ND+
Sbjct: 77 QRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDL 136
Query: 523 ALAARYLIRHGIVRKVLIVDLDVHQ 547
A+A R + + G+ +++LIVDLDVHQ
Sbjct: 137 AIATRTIQQRGLAQRILIVDLDVHQ 161
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
GY L HL +L+Q KPDLV YDAGVD H D LGKL +T+ G
Sbjct: 207 GYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGDRLGKLAMTNTG 251
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVHQHTRSIPV-- 554
I R HHA D GFCL N++A+AA +L+ V+K+LIVD DVH + +
Sbjct: 151 IVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFW 210
Query: 555 --PSLTVLS-------SCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQT 605
P + S P DY ++ G + G C D D LA
Sbjct: 211 KDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDH 270
Query: 606 II 607
I+
Sbjct: 271 IL 272
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2
Length = 938
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L +HG K+LIVD DVH
Sbjct: 652 RPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVH 696
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA +GFC+ N++A+AA+Y R ++VLI+D DVH
Sbjct: 560 HHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVH 600
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 475 FLSQRSEKMRNNGIF----LFLLRLSDPEINRFST-----HHAFPDHGAGFCLMNDMALA 525
F+++ S K+ +G+ L +++ N F+ HHA GFCL N++A A
Sbjct: 105 FMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQA 164
Query: 526 ARYLIRHGIVRKVLIVDLDVH 546
A G R +LIVDLDVH
Sbjct: 165 AEEAFFSGAER-ILIVDLDVH 184
>sp|P72702|Y245_SYNY3 Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0245 PE=3 SV=1
Length = 304
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ R HHA + G GFCL+N++A+AA Y + V +V I+D DVH
Sbjct: 119 LARPPGHHAIRNTGMGFCLLNNVAIAAHYALTRPGVERVAILDWDVHH 166
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1
Length = 682
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHG---IVRKVLIVDLDVH 546
HHA D GFCL N++A+AA +L+ V+K+LIVD D+H
Sbjct: 190 HHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIH 233
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA P GAGFC +N+MA+ ++L++ G R + I+D D H
Sbjct: 125 HHAKPYIGAGFCYLNNMAIMVKWLLKQGFER-IAILDWDAH 164
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+ A+YL + K+LIVDLDVH
Sbjct: 778 RPPGHHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVH 822
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 32 PIIHTNKYECT---LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
PI+++ +Y T L H F K+ K N+L +K++ S L+E ++ SE +VH
Sbjct: 17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDS-MLVEAREASEEDLLVVH 75
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVF 145
T+ Y+++ +WS +A+ PV ++LP FL +R V
Sbjct: 76 TRRYLNE---------------LKWSFAVATITEIPPV------IFLPNFLVQRKVL 111
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIR--HGIVRKVLIVDLDVHQ 547
HH D G GFC D+ LA ++L GI R I+DLD HQ
Sbjct: 142 HHCSSDRGGGFCAYADITLAIKFLFERVEGISRAT-IIDLDAHQ 184
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 32 PIIHTNKYECT---LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
PI+++ +Y T L H F K+ K N+L +K++ S L+E ++ SE +VH
Sbjct: 17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDS-MLVEAREASEEDLLVVH 75
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVF 145
T+ Y+++ +WS +A+ PV ++LP FL +R V
Sbjct: 76 TRRYLNE---------------LKWSFAVATITEIPPV------IFLPNFLVQRKVL 111
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIR--HGIVRKVLIVDLDVHQ 547
HH D G GFC D+ LA ++L GI R I+DLD HQ
Sbjct: 142 HHCSSDRGGGFCAYADITLAIKFLFERVEGISRAT-IIDLDAHQ 184
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P +GFC+ ND+A+ A+YL + ++VLI+D D H
Sbjct: 136 HHAQPGRASGFCIYNDIAITAQYLAKE-YNQRVLIIDTDAHH 176
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P +GFC+ ND+A+ A+YL + ++VLI+D D H
Sbjct: 136 HHAQPGRASGFCIYNDIAITAQYLAKE-YNQRVLIIDTDAHH 176
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P +GFC+ ND+A+ A+YL + ++VLI+D D H
Sbjct: 136 HHAQPGRASGFCIYNDIAITAQYLAKE-YNQRVLIIDTDAHH 176
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P +GFC+ ND+A+ A+YL + ++VLI+D D H
Sbjct: 136 HHAQPGRASGFCIYNDIAITAQYLAKE-YNQRVLIIDTDAHH 176
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P +GFC+ ND+A+ A+Y+ + ++VLI+D D H
Sbjct: 136 HHAQPGRASGFCIYNDIAITAQYIAKE-YNQRVLIIDTDAHH 176
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA P +GFC+ ND+A+ A+Y+ + ++VLI+D D H
Sbjct: 136 HHAQPGRASGFCIYNDIAITAQYIAKE-YNQRVLIIDTDAHH 176
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYL-IRHGIVRKVLIVDLDVH 546
HHA P+ GFC N +A+AAR+ I G ++LIVD DVH
Sbjct: 609 HHAEPNAACGFCFFNSVAVAARHAQIIAGRALRILIVDWDVH 650
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA + G+C+ N +A+AARY + +++VLIVD DVH
Sbjct: 214 HHAQHNLMDGYCMFNHLAVAARYAQKKHRIQRVLIVDWDVH 254
Score = 35.8 bits (81), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMH---CGRNYPFRK 447
R LI++ + + G GT FIFD+DP+V FS+H GR +P K
Sbjct: 244 QRVLIVDWDV--HHGQGTQFIFDQDPSVLYFSIHRYEHGRFWPHLK 287
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVH 546
HHA P GFCL +++A+AA+ ++++ VR+++I+D D+H
Sbjct: 205 HHAEPQAAGGFCLFSNVAVAAKNILKNYPESVRRIMILDWDIH 247
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
Length = 423
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 497 DPEIN----RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
DP I R HHA P GFC+ ++A+AAR+ R ++++ I+D DVH
Sbjct: 188 DPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVH 241
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA G+C+ N +A+AARY + +R+VLIVD DVH
Sbjct: 209 IIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVH 255
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 495 LSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIR-HGIVRKVLIVDLDVH 546
L+ + R HHA D GFC N +A+AAR+ G ++LIVD DVH
Sbjct: 599 LNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVDWDVH 651
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVH 546
HHA P GFCL N++++ AR +++ +++VLIVD D+H
Sbjct: 194 HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIH 236
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 25/117 (21%)
Query: 32 PIIHTNKYECT---LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVH 88
PI+++ +Y T L H F K+ K N+L +K++ L+E ++ SE +VH
Sbjct: 17 PIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDG-MLVEAREASEEDLLVVH 75
Query: 89 TKEYVHKFFNGKTTEKEQKVTGFEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVF 145
T+ Y+++ +WS +A+ PV ++LP FL +R V
Sbjct: 76 TRRYLNE---------------LKWSFVVATITEIPPV------IFLPNFLVQRKVL 111
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIR--HGIVRKVLIVDLDVHQ 547
HH D G GFC D+ LA ++L GI R I+DLD HQ
Sbjct: 142 HHCSSDRGGGFCAYADITLAIKFLFERVEGISRAT-IIDLDAHQ 184
>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2
Length = 1113
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA GFC N +A+ A+ L + V KVLIVD D+H
Sbjct: 817 IIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLSVGKVLIVDWDIH 863
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1
Length = 1080
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+AA+ L + V K+LIVD DVH
Sbjct: 794 RPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVH 838
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1
Length = 1111
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA GFC N +A+ A+ L + V KVLIVD D+H
Sbjct: 815 IIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIH 861
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3
Length = 1084
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+AA+ L + V K+LIVD DVH
Sbjct: 798 RPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVH 842
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2
Length = 952
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+A R L + K+LIVD DVH
Sbjct: 665 RPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVH 709
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+AA+ L + V K+LIVD DVH
Sbjct: 791 RPPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVH 835
>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1
Length = 1122
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA GFC N +A+ A+ L + V KVLIVD D+H
Sbjct: 826 IIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIH 872
>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=2
Length = 1122
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
I R HHA GFC N +A+ A+ L + V KVLIVD D+H
Sbjct: 826 IIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIH 872
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
R HHA GFC N +A+AA+ L + V K+LIVD DVH
Sbjct: 790 RPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLNVSKILIVDWDVH 834
>sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1
Length = 377
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HH+ P G+C +N+ ALA + + G +V ++D+DVH
Sbjct: 144 HHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVH 184
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA +GFC +ND+ALAA L+++ ++VL +D+DVH
Sbjct: 137 HHAKKREASGFCYVNDIALAALELLKYH--QRVLYIDIDVHH 176
>sp|Q569C4|HDA10_RAT Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1
Length = 588
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSI 552
R HH+ GFC+ N++A+AAR+ + ++++LIVD DVH H + I
Sbjct: 130 RPPGHHSQRAAANGFCVFNNVAIAARHAKQKYGLQRILIVDWDVH-HGQGI 179
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSI 552
R HH+ GFC+ N++ALAA++ + ++++LIVD DVH H + I
Sbjct: 130 RPPGHHSQRAAANGFCVFNNVALAAKHAKQKYGLQRILIVDWDVH-HGQGI 179
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HH+ P GFC+ ND+A+ YL++ ++VL +D D H
Sbjct: 136 HHSLPGRANGFCIYNDVAITISYLMQK-YNQRVLCIDTDAH 175
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 500 INRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
+ R HHA D GFC+ N++A+A + R+ V + L++D DVH
Sbjct: 111 LGRPPGHHATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHH 158
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKL 234
Y L LP +L F+PD++ AG D H+ D L ++
Sbjct: 217 YLWILGMILPAVLEGFRPDMIFVSAGFDAHRRDPLAEI 254
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 449 CSDLDVAIDVGTDDAGN----RTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS 504
C + + D +DA R A T + SQ +E NG R
Sbjct: 576 CGGIGIDSDTYFNDASTQIAARLAAGTLIELSSQVAEGRLKNGFACI----------RPP 625
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRHGIVR--KVLIVDLDVH 546
HHA + GFC N++A+ A+ L V+ K+ I+D DVH
Sbjct: 626 GHHAEAEQALGFCFFNNVAVTAKVLQAKYPVQCAKIAIIDWDVH 669
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 494 RLSDPEIN-RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R+ D IN HHA D +GFC +ND+ LA L++ +VL +D+DVH
Sbjct: 130 RMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELLK--FHARVLYIDIDVHH 182
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT--DHGECI 243
Y K + G++ ++P +++ G D + D LG NLT H EC+
Sbjct: 239 KNYLNIFKPVIQGVMDYYRPSVIVLQCGADSLRFDRLGCFNLTIKGHAECV 289
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 449 CSDLDVAIDVGTDDAGNRTVAL----TWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFS 504
C + V D +DA +T A T + SQ +E NG R
Sbjct: 556 CGGIGVDSDTYFNDASTQTAARLAAGTLIELSSQVAEGRLKNGFACI----------RPP 605
Query: 505 THHAFPDHGAGFCLMNDMALAARYLIRH--GIVRKVLIVDLDVH 546
HHA + GFC N++A+A + L K+ I+D DVH
Sbjct: 606 GHHAEHEQAMGFCFFNNVAVAVKVLQTKYPAQCAKIAIIDWDVH 649
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HH + G GFC D++L + + +V+I+DLD HQ
Sbjct: 200 HHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQ 241
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 183 IHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
+ M G T Y L E L F+P+LVIY+AG D D LG L ++ G
Sbjct: 280 VEVMSGTTTDE---YLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDG 334
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 28 LVHLPIIHTNKYECT---LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIA 84
L + II+++ Y+ + + H F SK+ + +LV D +++ K ++EP + S+
Sbjct: 71 LSKVSIIYSSSYDISFMGIEKLHPFDSSKWGRVCKFLVSDGFLEE-KAIVEPLEASKIDL 129
Query: 85 ELVHTKEYVHKFFNGKTTEKEQKV 108
+VH++ Y++ + T + +V
Sbjct: 130 LVVHSENYLNSLKSSATVARITEV 153
>sp|Q12214|HOS1_YEAST Histone deacetylase HOS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HOS1 PE=1 SV=1
Length = 470
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHAF +GFC +ND+ L + L R + K+ VD D+H
Sbjct: 210 HHAFKQRASGFCYINDVVLLIQRL-RKAKLNKITYVDFDLH 249
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHC---GRNYPFRKQCSDLDVAIDVGTD 461
HR L+++ + + G G ++F+ DP+V FS H GR +PF ++ SD D VG
Sbjct: 164 HRILVVDWDV--HHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRE-SDADA---VGRG 217
Query: 462 DAGNRTVALTW 472
TV L W
Sbjct: 218 QGLGFTVNLPW 228
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSI 552
R HH GFC+ N++A+AA + + + ++L+VD DVH H + I
Sbjct: 130 RPPGHHGQRAAANGFCVFNNVAIAAAHAKQKHGLHRILVVDWDVH-HGQGI 179
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HH F +GFC+ ND A+A +Y I+ +VL +D D H
Sbjct: 132 HHGFRGRASGFCIYNDSAVAIQY-IQKKYSARVLYIDTDAH 171
>sp|Q48935|APHA_MYCRA Acetylpolyamine aminohydrolase OS=Mycoplana ramosa GN=aphA PE=1
SV=1
Length = 341
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D G+C +N+ A+AA+ L+ G +K+ I+D+D H
Sbjct: 158 HHAGIDMFGGYCFINNAAVAAQRLLDKG-AKKIAILDVDFHH 198
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 21/161 (13%)
Query: 104 KEQKVTGFEWSAGLASRVRTDP-----VPTHVIAVYLPFFLQRRPVFFDIAAVLADLICI 158
Q WS GL + P V V+++ R ++ DI D +
Sbjct: 144 NNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHPRILYIDIDLHHGDGVQE 203
Query: 159 AVYLT------FFLQRRPVFFDIAAVLADL-----IHFMVGINTQPV---SGYQATLKEH 204
A Y T F + FF L ++ HF + + + Y K
Sbjct: 204 AFYTTDRVFTLSFHKYNGEFFPGTGDLTEIGCDKGKHFALNVPLEDGIDDDSYINLFKSI 263
Query: 205 LPGILAQFKPDLVIYDAGVDPHQHDELG--KLNLTDHGECI 243
+ ++ FKP L++ G D HD LG LN+ HGEC+
Sbjct: 264 VDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLNIKAHGECV 304
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA + +GFC +ND+ L+ L+R+ ++L +D+D+H
Sbjct: 158 HHAKKNSPSGFCYVNDIVLSILNLLRYH--PRILYIDIDLHH 197
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1
SV=1
Length = 480
Score = 37.4 bits (85), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 26/164 (15%)
Query: 104 KEQKVTGFEWSAGLASRVRTDP-----VPTHVIAVYLPFFLQRRPVFFDIAAVLADLICI 158
K+Q WS GL +++ V V+A+ +R V+ DI D +
Sbjct: 126 KQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEE 185
Query: 159 AVY-----LTFFLQRRPVFFDIAAVLADL---------IHFMV--GINTQPVSGYQATLK 202
A Y +T + +F L D+ +++ + GI+ + Y+A K
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDES---YEAIFK 242
Query: 203 EHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT--DHGECIS 244
+ ++ F+P V+ G D D LG NLT H +C+
Sbjct: 243 PVMSKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVE 286
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA +GFC +ND+ LA L+++ ++V+ +D+D+H
Sbjct: 140 HHAKKSEASGFCYVNDIVLAILELLKYH--QRVVYIDIDIH 178
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA +GFC +ND+ LA L++H +VL VD+D+H
Sbjct: 153 HHAKKCEASGFCYVNDIVLAILELLKHH--ERVLYVDIDIH 191
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA +GFC +ND+ LA L+++ ++VL +D+D+H
Sbjct: 140 HHAKKSEASGFCYVNDIVLAILELLKYH--QRVLYIDIDIH 178
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 26/164 (15%)
Query: 104 KEQKVTGFEWSAGLASRVRTDP-----VPTHVIAVYLPFFLQRRPVFFDIAAVLADLICI 158
K+Q W+ GL +++ V V+A+ +R ++ DI D +
Sbjct: 126 KQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE 185
Query: 159 AVY-----LTFFLQRRPVFFDIAAVLADL-----IHFMV------GINTQPVSGYQATLK 202
A Y +T + +F L D+ ++ V GI+ + Y+A K
Sbjct: 186 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDES---YEAIFK 242
Query: 203 EHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLT--DHGECIS 244
+ ++ F+P V+ G D D LG NLT H +C+
Sbjct: 243 PVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVE 286
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 506 HHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546
HHA D +GFC +ND L L R ++L VDLD+H
Sbjct: 142 HHAKKDEASGFCYLNDAVLGILRLRRK--FERILYVDLDLH 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,798,306
Number of Sequences: 539616
Number of extensions: 10016492
Number of successful extensions: 25729
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 25491
Number of HSP's gapped (non-prelim): 287
length of query: 620
length of database: 191,569,459
effective HSP length: 124
effective length of query: 496
effective length of database: 124,657,075
effective search space: 61829909200
effective search space used: 61829909200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)