Query psy16742
Match_columns 620
No_of_seqs 360 out of 2654
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:49:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0123 AcuC Deacetylases, inc 100.0 1.8E-45 3.9E-50 389.7 21.4 281 29-596 2-296 (340)
2 PTZ00063 histone deacetylase; 100.0 8.7E-43 1.9E-47 377.2 20.2 288 30-611 5-316 (436)
3 PTZ00346 histone deacetylase; 100.0 1.5E-42 3.3E-47 373.3 19.4 296 16-611 13-334 (429)
4 PF00850 Hist_deacetyl: Histon 100.0 1.6E-41 3.4E-46 357.2 11.4 269 36-595 1-296 (311)
5 KOG1343|consensus 100.0 1E-39 2.2E-44 372.7 20.4 543 29-615 29-688 (797)
6 KOG1342|consensus 100.0 1.8E-36 3.9E-41 315.1 17.4 283 30-605 8-312 (425)
7 KOG1344|consensus 100.0 1.9E-29 4.1E-34 248.1 10.5 286 28-602 13-311 (324)
8 PF00850 Hist_deacetyl: Histon 99.9 3.9E-29 8.5E-34 263.3 3.6 188 409-614 39-239 (311)
9 KOG1343|consensus 99.9 2.9E-28 6.2E-33 279.0 10.8 231 45-286 463-765 (797)
10 COG0123 AcuC Deacetylases, inc 99.9 2.2E-28 4.8E-33 259.5 8.8 162 413-600 57-230 (340)
11 PTZ00346 histone deacetylase; 99.9 2.9E-28 6.3E-33 263.0 9.8 127 115-244 129-299 (429)
12 PTZ00063 histone deacetylase; 99.9 8.1E-27 1.8E-31 253.1 10.4 169 115-289 112-332 (436)
13 KOG1342|consensus 99.9 3.5E-22 7.6E-27 208.8 7.0 170 414-603 63-246 (425)
14 KOG1344|consensus 99.6 1.1E-15 2.4E-20 151.3 7.2 109 134-244 136-279 (324)
15 KOG0121|consensus 52.2 13 0.00029 35.1 2.9 41 510-550 74-119 (153)
16 cd01835 SGNH_hydrolase_like_3 33.9 79 0.0017 30.3 5.4 49 195-244 51-100 (193)
17 PF13277 YmdB: YmdB-like prote 29.7 74 0.0016 33.3 4.5 54 198-257 12-65 (253)
18 TIGR02855 spore_yabG sporulati 28.8 64 0.0014 34.2 3.9 27 203-230 143-169 (283)
19 cd03110 Fer4_NifH_child This p 28.8 91 0.002 29.7 4.8 25 199-223 78-102 (179)
20 COG0112 GlyA Glycine/serine hy 25.2 47 0.001 36.9 2.3 22 205-228 158-179 (413)
21 PF02310 B12-binding: B12 bind 24.8 1.7E+02 0.0038 25.7 5.6 40 159-222 21-60 (121)
22 PF05582 Peptidase_U57: YabG p 23.2 94 0.002 33.1 3.9 27 203-230 144-170 (287)
No 1
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-45 Score=389.70 Aligned_cols=281 Identities=22% Similarity=0.251 Sum_probs=244.4
Q ss_pred ccccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCChh-hh
Q psy16742 29 VHLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEK-EQ 106 (620)
Q Consensus 29 m~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~~-~~ 106 (620)
|++.++||+.|.. .++++|||+|.|++++.++|++.++.. .+.+++|++++.++|++||+++||+.+.+...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~-~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~~~~ 80 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPD-SLELVEPRPATLEELLLVHSPDYVEFLESLSEEEGYGN 80 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccc-cccccCCCcCCHHHHHhhCCHHHHHHHHHhcccccccc
Confidence 5678999998887 899999999999999999999999776 78899999999999999999999999988654421 24
Q ss_pred hhcCcccCHHhHHHHHhccCchhHHHhh-cCCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCCcce
Q psy16742 107 KVTGFEWSAGLASRVRTDPVPTHVIAVY-LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHF 185 (620)
Q Consensus 107 ~~~g~~~s~~s~e~A~lAaGgti~Aa~~-~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGngih~ 185 (620)
.+.+++++++++++|++++||+++|++. ++|.
T Consensus 81 ~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~----------------------------------------------- 113 (340)
T COG0123 81 LDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE----------------------------------------------- 113 (340)
T ss_pred ccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-----------------------------------------------
Confidence 5567899999999999999999988531 1111
Q ss_pred ecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcccccccccc
Q psy16742 186 MVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGK 265 (620)
Q Consensus 186 ~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~ 265 (620)
.
T Consensus 114 ----------------------------------------------------------------------~--------- 114 (340)
T COG0123 114 ----------------------------------------------------------------------D--------- 114 (340)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred cccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccccCCCeEeec
Q psy16742 266 LNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQ 345 (620)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~C~~~ 345 (620)
.++ |+++||+|||.+ +.++|||+|
T Consensus 115 ---------------------~~~------------------------------~~~rppgHHA~~----~~a~GFC~f- 138 (340)
T COG0123 115 ---------------------NAF------------------------------ALVRPPGHHAGR----DRASGFCLF- 138 (340)
T ss_pred ---------------------ceE------------------------------EECCCCcccccC----CCCceeeee-
Confidence 122 889999999998 999999999
Q ss_pred CCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccChhHHHHH
Q psy16742 346 PPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFI 425 (620)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng~~~i 425 (620)
||+| |||+.++ +. +..||+||| +|+|||||||+|
T Consensus 139 ----------------------Nn~A------iaa~~l~---------------~~-~~~RVaIiD--~DvHHGnGTqei 172 (340)
T COG0123 139 ----------------------NNVA------IAAKYLL---------------KK-GVKRVAIID--FDVHHGNGTQEI 172 (340)
T ss_pred ----------------------cHHH------HHHHHHH---------------Hc-CCCcEEEEE--ecCCCChhhHHH
Confidence 9999 9999994 23 689999999 999999999999
Q ss_pred HhhCCCceeeccccC--CCCCCccc---------cCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhc
Q psy16742 426 FDKDPAVFTFSMHCG--RNYPFRKQ---------CSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLR 494 (620)
Q Consensus 426 f~~~p~v~t~S~H~~--~~yP~~~~---------~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (620)
|+++|+|+++|+|+. .+||+++. ..+.|+||++|+.++.|+.+ +.... ..+.+.|+
T Consensus 173 fy~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a-~~~~v--~~~~~~f~---------- 239 (340)
T COG0123 173 FYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEA-LEEIV--LPLLEEFK---------- 239 (340)
T ss_pred HccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHHHHHH-HHHHH--HHHHHhcC----------
Confidence 999999999999995 78999876 57799999999999999999 55433 44556666
Q ss_pred cCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCccccchhH
Q psy16742 495 LSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYV 574 (620)
Q Consensus 495 ~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v 574 (620)
|| ++||++++|...+ |+++.|++|.++|..++..+
T Consensus 240 ---------------Pd--------------------------lvivsaG~D~h~~----Dpl~~~~Lt~~~~~~~~~~v 274 (340)
T COG0123 240 ---------------PD--------------------------LVIVSAGFDAHRG----DPLGRLNLTEEGYAKIGRAV 274 (340)
T ss_pred ---------------CC--------------------------EEEEecCcccCCC----CccceeecCHHHHHHHHHHH
Confidence 89 9999988888888 99999999999999999999
Q ss_pred HHHHHhcCCCeeecCCCCChhh
Q psy16742 575 LDTAISAGIPVATVTGGGYCAD 596 (620)
Q Consensus 575 ~~~~~~~niPl~~~~gGGY~~~ 596 (620)
.+.+...++|++.++||||+.+
T Consensus 275 ~~~a~~~~~~~~~vleGGY~~~ 296 (340)
T COG0123 275 RKLAEGYGGPVVAVLEGGYNLD 296 (340)
T ss_pred HHHHHhcCCCeEEEecCCCChH
Confidence 9999988999999999999885
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=8.7e-43 Score=377.16 Aligned_cols=288 Identities=18% Similarity=0.199 Sum_probs=231.3
Q ss_pred cccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCChhh---
Q psy16742 30 HLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKE--- 105 (620)
Q Consensus 30 ~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~~~--- 105 (620)
++.++|+|.|.. .++++|||+|.|+++++++|+++|+.. .+++++|++||.++|++|||++||++|++.......
T Consensus 5 ~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~-~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~ 83 (436)
T PTZ00063 5 RVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYK-HMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRDFT 83 (436)
T ss_pred eEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcc-cCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcccch
Confidence 477999999998 788999999999999999999999987 899999999999999999999999999864322100
Q ss_pred --hh--h----cCcccCHHhHHHHHhccCchhHHHhhc-CCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEee
Q psy16742 106 --QK--V----TGFEWSAGLASRVRTDPVPTHVIAVYL-PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIA 176 (620)
Q Consensus 106 --~~--~----~g~~~s~~s~e~A~lAaGgti~Aa~~~-~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D 176 (620)
.. . .++|+++++++++++++||+|.||..+ .|.
T Consensus 84 ~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~-------------------------------------- 125 (436)
T PTZ00063 84 YQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQ-------------------------------------- 125 (436)
T ss_pred hhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCC--------------------------------------
Confidence 11 1 257899999999999999999885422 111
Q ss_pred eeeCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCc
Q psy16742 177 AVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVD 256 (620)
Q Consensus 177 ~HhGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~ 256 (620)
.++
T Consensus 126 --------------------------------------------------------------~~i--------------- 128 (436)
T PTZ00063 126 --------------------------------------------------------------ADI--------------- 128 (436)
T ss_pred --------------------------------------------------------------CCE---------------
Confidence 011
Q ss_pred ccccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccc
Q psy16742 257 PHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQ 336 (620)
Q Consensus 257 ~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 336 (620)
++++.|+.|||.+ +
T Consensus 129 --------------------------------------------------------------Ain~~GG~HHA~~----~ 142 (436)
T PTZ00063 129 --------------------------------------------------------------CVNWSGGLHHAKR----S 142 (436)
T ss_pred --------------------------------------------------------------EeeCCCCCCCCcc----C
Confidence 2344444477776 9
Q ss_pred cCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCc
Q psy16742 337 FTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPC 416 (620)
Q Consensus 337 ~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldv 416 (620)
.++||||| ||+| |||+++++ ..+||+||| |||
T Consensus 143 ~A~GFC~~-----------------------Ndia------iAi~~L~~-----------------~~~RVliID--~Dv 174 (436)
T PTZ00063 143 EASGFCYI-----------------------NDIV------LGILELLK-----------------YHARVMYID--IDV 174 (436)
T ss_pred CCCceeee-----------------------cHHH------HHHHHHHH-----------------hCCeEEEEe--CCC
Confidence 99999999 9999 99999942 236999999 999
Q ss_pred cChhHHHHHHhhCCCceeeccccCC-CCCCcccc----------CCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhh
Q psy16742 417 YDGDGTAFIFDKDPAVFTFSMHCGR-NYPFRKQC----------SDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRN 485 (620)
Q Consensus 417 H~gng~~~if~~~p~v~t~S~H~~~-~yP~~~~~----------~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~ 485 (620)
|||||||++|+.+|+|+|+|+|+.+ .||.++.. .++|+||++|+.+..|+.+ +.... ..+...|+
T Consensus 175 HHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~-f~~ii--~~~i~~f~- 250 (436)
T PTZ00063 175 HHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDL-FKPVI--SKCVEVYR- 250 (436)
T ss_pred CCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHH-HHHHH--HHHHHHhC-
Confidence 9999999999999999999999976 67987532 2489999999999999998 54333 44456666
Q ss_pred cchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecC
Q psy16742 486 NGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVP 565 (620)
Q Consensus 486 ~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~ 565 (620)
|+ ++|+++++|...+ |+++.|+||..
T Consensus 251 ------------------------Pd--------------------------~IvvqaG~D~~~~----DpLg~l~Lt~~ 276 (436)
T PTZ00063 251 ------------------------PG--------------------------AIVLQCGADSLTG----DRLGRFNLTIK 276 (436)
T ss_pred ------------------------CC--------------------------EEEEECCccccCC----CCCCCcccCHH
Confidence 88 9999999998888 99999999999
Q ss_pred CccccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHHHHHHHHH
Q psy16742 566 GLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611 (620)
Q Consensus 566 g~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~a 611 (620)
|+.. +.+.++++++|++.++||||+. ..++..+....-++
T Consensus 277 g~~~----~~~~~~~~~~pil~l~gGGY~~--~~lar~w~~~t~~~ 316 (436)
T PTZ00063 277 GHAA----CVEFVRSLNIPLLVLGGGGYTI--RNVARCWAYETGVI 316 (436)
T ss_pred HHHH----HHHHHHhcCCCEEEEeCccCCc--hHHHHHHHHHHHHH
Confidence 9865 3455677899999999999976 55555554444444
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=1.5e-42 Score=373.28 Aligned_cols=296 Identities=18% Similarity=0.187 Sum_probs=231.5
Q ss_pred ccchhhhhccCCCccccEEeCccccc-----cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCH
Q psy16742 16 ELTKEQKSQLDRLVHLPIIHTNKYEC-----TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTK 90 (620)
Q Consensus 16 ~~~~~~~~~~~~~m~~~ivy~p~y~~-----~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~ 90 (620)
.|++|-+++ ..+||++.|.. .++++|||+|+|++++++.|+++|+.. ++.+++|++||.++|++|||+
T Consensus 13 ~~~~~~~~~------~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~-~~~~~~p~~At~eeL~~vHs~ 85 (429)
T PTZ00346 13 LLNTESRGR------VALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDA-HCRTVVPPLVKVEELMAYHTD 85 (429)
T ss_pred cCCccccce------eEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcc-cCeeecCCCCCHHHHHHhCCH
Confidence 355555553 67896666553 688899999999999999999999987 889999999999999999999
Q ss_pred HHHHHHhcCCCC----hhhhhh----cCcccCHHhHHHHHhccCchhHHHh-hcCCCcCCCCccccchhhhhHHHHHHHH
Q psy16742 91 EYVHKFFNGKTT----EKEQKV----TGFEWSAGLASRVRTDPVPTHVIAV-YLPFFLQRRPVFFDIAAVLADLICIAVY 161 (620)
Q Consensus 91 ~YI~~l~~~~~~----~~~~~~----~g~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg~~GHHA~~d~a~ifNnvAiAa~~ 161 (620)
+||++|++.... .++... .++|+++++++++++++||++.||+ ++.|.
T Consensus 86 ~YI~~l~~~~~~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~----------------------- 142 (429)
T PTZ00346 86 TYLANLGLHSCRSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQ----------------------- 142 (429)
T ss_pred HHHHHHHHhcccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCC-----------------------
Confidence 999999752111 111111 2368999999999999999998864 22222
Q ss_pred HHHhCCCCeEEEEeeeeeCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHH
Q psy16742 162 LTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGE 241 (620)
Q Consensus 162 l~~~~~~RVlIVD~D~HhGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~ 241 (620)
.++
T Consensus 143 -----------------------------------------------------------------------------~~~ 145 (429)
T PTZ00346 143 -----------------------------------------------------------------------------VDV 145 (429)
T ss_pred -----------------------------------------------------------------------------CCE
Confidence 001
Q ss_pred HhhccccccccCCCcccccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccc
Q psy16742 242 CISSSARISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGIN 321 (620)
Q Consensus 242 ~~~~~~~~~~~agg~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (620)
+++
T Consensus 146 -----------------------------------------------------------------------------Ai~ 148 (429)
T PTZ00346 146 -----------------------------------------------------------------------------AVH 148 (429)
T ss_pred -----------------------------------------------------------------------------EEe
Confidence 134
Q ss_pred cCCCCCCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCC
Q psy16742 322 TQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGM 401 (620)
Q Consensus 322 ~~p~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 401 (620)
+.|+.|||.+ +.++||||| ||+| |||+.+++
T Consensus 149 ~pGG~HHA~~----~~a~GFC~f-----------------------NdvA------IAa~~ll~---------------- 179 (429)
T PTZ00346 149 WGGGMHHSKC----GECSGFCYV-----------------------NDIV------LGILELLK---------------- 179 (429)
T ss_pred CCCCcCcCCC----CCCCcchHH-----------------------hHHH------HHHHHHHH----------------
Confidence 4443477777 999999999 9999 99999842
Q ss_pred CCcceeEEEecccCccChhHHHHHHhhCCCceeeccccCC--CCCCcccc----------CCCCccccCCchHHHHhhcc
Q psy16742 402 KSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGR--NYPFRKQC----------SDLDVAIDVGTDDAGNRTVA 469 (620)
Q Consensus 402 ~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~~--~yP~~~~~----------~d~D~pl~~gt~~aa~la~G 469 (620)
+.+||+||| ||||||||||++|+++|+|+|+|+|+.+ +||+++.. .+.|+||++|+.++.|+.+
T Consensus 180 -~~~RVliID--~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~- 255 (429)
T PTZ00346 180 -CHDRVLYVD--IDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGL- 255 (429)
T ss_pred -cCCeEEEEe--CCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHH-
Confidence 246999999 9999999999999999999999999864 89987542 3479999999999999999
Q ss_pred hhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCC
Q psy16742 470 LTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHT 549 (620)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~Gd 549 (620)
+.... ..+.+.|+ |+ ++||++++|...
T Consensus 256 f~~ii--~p~l~~F~-------------------------Pd--------------------------lIvvsaG~Da~~ 282 (429)
T PTZ00346 256 FEHAL--HSIVRRYS-------------------------PD--------------------------AIVLQCGADSLA 282 (429)
T ss_pred HHHHH--HHHHHhcC-------------------------CC--------------------------EEEEECCccCCC
Confidence 54333 44556666 89 999999888888
Q ss_pred CCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHHHHHHHHH
Q psy16742 550 RSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRAA 611 (620)
Q Consensus 550 G~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~a 611 (620)
+ |+++.|+||..|+.... +...++++|++.++||||+. ..++..+..++.++
T Consensus 283 ~----DpLg~l~LT~~g~~~~~----~~l~~~~~plv~vleGGY~~--~~lar~w~~~t~~l 334 (429)
T PTZ00346 283 G----DRLGLLNLSSFGHGQCV----QAVRDLGIPMLALGGGGYTI--RNVAKLWAYETSIL 334 (429)
T ss_pred C----CCCCCceeCHHHHHHHH----HHHHhcCCCEEEEeCCcCCc--cHHHHHHHHHHHHH
Confidence 8 99999999999987754 44556799999999999976 44555555554443
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=1.6e-41 Score=357.20 Aligned_cols=269 Identities=21% Similarity=0.254 Sum_probs=198.4
Q ss_pred CccccccCCCCCCCCchHHHHHHHHHHhc-CCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCChhhhh-------
Q psy16742 36 TNKYECTLPPNHRFPMSKFSKTFNYLVRD-KVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEKEQK------- 107 (620)
Q Consensus 36 ~p~y~~~~~~~HPe~p~R~~~i~~~L~~~-gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~~~~~------- 107 (620)
||.|...+++.|||+|+|++.+.+.|++. ++++ . ++++.++|++|||++||+.|++.........
T Consensus 1 ~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~-~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQHQLGDGHPESPERLESIVEALKESYGLLP-R------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----TT-CCTTSSSCTHHHHHHHHHHHHTTTGGG-G----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCcccCCCCCCcCCCHHHHHHHHHHHHHhcCCCC-C------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 68888888999999999999999999986 7765 2 9999999999999999999976331111110
Q ss_pred -----hcCcccCHHhHHHHHhccCchhHHHh-hcCCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeeeeeCC
Q psy16742 108 -----VTGFEWSAGLASRVRTDPVPTHVIAV-YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLAD 181 (620)
Q Consensus 108 -----~~g~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGn 181 (620)
..++++++++++++++++||++.|++ ++.|.
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~------------------------------------------- 110 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGE------------------------------------------- 110 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------------
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhccc-------------------------------------------
Confidence 23568899999999999999998853 22221
Q ss_pred CcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcccccc
Q psy16742 182 LIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHD 261 (620)
Q Consensus 182 gih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~~~ 261 (620)
..
T Consensus 111 --------------------------------------------------------------------------~~---- 112 (311)
T PF00850_consen 111 --------------------------------------------------------------------------IK---- 112 (311)
T ss_dssp --------------------------------------------------------------------------SS----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred cccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccccCCCe
Q psy16742 262 ELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPI 341 (620)
Q Consensus 262 ~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~ 341 (620)
+++ .++ |||+|||.+ +.++||
T Consensus 113 -------------------------~~~-----------------------------a~~-rppgHHA~~----~~a~GF 133 (311)
T PF00850_consen 113 -------------------------NAF-----------------------------ALV-RPPGHHAER----DRAMGF 133 (311)
T ss_dssp -------------------------EEE-----------------------------EEE-SS--TT-BT----TBBBTT
T ss_pred -------------------------cee-----------------------------eec-CccccccCc----CcCcce
Confidence 233 234 999999988 999999
Q ss_pred EeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccChhH
Q psy16742 342 CYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDG 421 (620)
Q Consensus 342 C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng 421 (620)
|+| ||+| ||+++++ +....+||+||| ||+|||||
T Consensus 134 C~~-----------------------Nnva------iaa~~l~---------------~~~~~~rV~iiD--~DvHhGnG 167 (311)
T PF00850_consen 134 CYF-----------------------NNVA------IAAKYLR---------------KKYGLKRVAIID--FDVHHGNG 167 (311)
T ss_dssp BSS------------------------HHH------HHHHHHH---------------HTTTTSSEEEEE---SSS--HH
T ss_pred eee-----------------------ccHH------HHHHHHh---------------hccccceEEEEE--eCCCCccc
Confidence 999 9999 9999993 334578999999 99999999
Q ss_pred HHHHHhhCCCceeecccc--CCCCC-Cccc----------cCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcch
Q psy16742 422 TAFIFDKDPAVFTFSMHC--GRNYP-FRKQ----------CSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGI 488 (620)
Q Consensus 422 ~~~if~~~p~v~t~S~H~--~~~yP-~~~~----------~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~ 488 (620)
||.+|+.||+|+++|+|+ ..+|| .++. ..+.|+||++|+.+..|+.+ +.... ..+.++|+
T Consensus 168 tq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~-~~~~l--~~~~~~f~---- 240 (311)
T PF00850_consen 168 TQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEA-FEEIL--LPALEEFR---- 240 (311)
T ss_dssp HHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHH-HHHHH--HHHHHHHT----
T ss_pred chhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHH-Hhhcc--ccchhccc----
Confidence 999999999999999999 67899 3321 25689999999999999988 54333 44556676
Q ss_pred hhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCcc
Q psy16742 489 FLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLY 568 (620)
Q Consensus 489 ~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~ 568 (620)
|+ +++|.+++|...+ |+++.+.+|.++|.
T Consensus 241 ---------------------P~--------------------------~ivvsaG~D~~~~----Dplg~~~lt~~~~~ 269 (311)
T PF00850_consen 241 ---------------------PD--------------------------LIVVSAGFDAHAG----DPLGGLNLTPEGYR 269 (311)
T ss_dssp ----------------------S--------------------------EEEEEE-STTBTT----STT-SEBB-HHHHH
T ss_pred ---------------------Cc--------------------------EEEEccCcccchh----ccccCcCCCHHHHH
Confidence 88 9999988888888 99999999999999
Q ss_pred ccchhHHHHHHhcCCCeeecCCCCChh
Q psy16742 569 MRDYYVLDTAISAGIPVATVTGGGYCA 595 (620)
Q Consensus 569 ~~~~~v~~~~~~~niPl~~~~gGGY~~ 595 (620)
.++..+.+.+.+.++|++.++||||+.
T Consensus 270 ~~~~~~~~~a~~~~~~~v~vleGGY~~ 296 (311)
T PF00850_consen 270 ELTRRLKSLAKRHCIPVVSVLEGGYNP 296 (311)
T ss_dssp HHHHHHHTTHSHHSGCEEEEE-S-SSH
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCh
Confidence 999999999888877999999999988
No 5
>KOG1343|consensus
Probab=100.00 E-value=1e-39 Score=372.68 Aligned_cols=543 Identities=16% Similarity=0.115 Sum_probs=334.3
Q ss_pred ccccEEeCcccccc---CCCCCC-CCchHHHHHHHHHHhcCCCCcCceeecC-CCCCHHHHHhcCCHHHHHHHhcCC-CC
Q psy16742 29 VHLPIIHTNKYECT---LPPNHR-FPMSKFSKTFNYLVRDKVIDKSKQLIEP-QQISESIAELVHTKEYVHKFFNGK-TT 102 (620)
Q Consensus 29 m~~~ivy~p~y~~~---~~~~HP-e~p~R~~~i~~~L~~~gl~~~~~~~~~P-~~At~eeL~~vHs~~YI~~l~~~~-~~ 102 (620)
++..++|++.-..+ ..+.|+ +.++|++.+.+.+.+.++.. ++.+..+ +.+++++++.+|+++|++.+.... ..
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~ 107 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQ-PLLILRNKREAKESAVASVHVKEKLQEFLLSKKMT 107 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCcc-ccccccchhhcccchhcccccHHHHHHHHhhhhhc
Confidence 45678888777653 344555 88999999999999998887 7766666 899999999999999999997644 11
Q ss_pred hhh-hhh-----cCcccCHHhHHHHHhccCchhHHHh-hcCC-----Cc----CCCCccccchh---hhhHHHHHHHH-H
Q psy16742 103 EKE-QKV-----TGFEWSAGLASRVRTDPVPTHVIAV-YLPF-----FL----QRRPVFFDIAA---VLADLICIAVY-L 162 (620)
Q Consensus 103 ~~~-~~~-----~g~~~s~~s~e~A~lAaGgti~Aa~-~~~G-----g~----~GHHA~~d~a~---ifNnvAiAa~~-l 162 (620)
.+. .+. -...+++.++..+.++.|+.+.... .+.| .. +|||++++... +|||||++++. +
T Consensus 108 ~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~ 187 (797)
T KOG1343|consen 108 AEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPL 187 (797)
T ss_pred chhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhccc
Confidence 111 111 1124578889999999999998543 2333 11 59999998766 99999999997 6
Q ss_pred HHhCCCCeEEEEeeeeeCCC-----------------cceec----------------------CCcc--------CChH
Q psy16742 163 TFFLQRRPVFFDIAAVLADL-----------------IHFMV----------------------GINT--------QPVS 195 (620)
Q Consensus 163 ~~~~~~RVlIVD~D~HhGng-----------------ih~~~----------------------G~n~--------~gD~ 195 (620)
.++..+||+|+|||+|||+| +|... |+++ .+|.
T Consensus 188 ~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~ 267 (797)
T KOG1343|consen 188 LRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDA 267 (797)
T ss_pred cccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcch
Confidence 66668999999999999977 11110 2221 4799
Q ss_pred HHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCC-CCCcccCHHHHHhhccccccccCC-Ccccccccccccccccc--
Q psy16742 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE-LGKLNLTDHGECISSSARISSEAG-VDPHQHDELGKLNLTDH-- 271 (620)
Q Consensus 196 ~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~Dp-LG~l~LT~~g~~~~~~~~~~~~ag-g~~~~~~~~g~~~~~~~-- 271 (620)
+|..+|.++++|...+|+||+|++|||||++-+|| +|.|..|+.+|+.++.. ...+| |.. .....|++++-..
T Consensus 268 dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~--~~~~~r~~l-~v~~e~gy~le~l~~ 344 (797)
T KOG1343|consen 268 DYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSM--HRPLGRGQL-VVVLEGGYFLEKLAQ 344 (797)
T ss_pred hhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhcc--ccccccCcc-ceecchhHHHHHHHH
Confidence 99999999999999999999999999999999997 79999999999998332 12222 221 1222244443311
Q ss_pred ---cchhhccCCCCCCCch-------------hhhhhhhhh--cccCchhhhHHHHHHHHHhh------hhccccCCCCC
Q psy16742 272 ---GVKYILNDRTDPVPTH-------------VIAVYLTFF--LQRRPVFFDIAAVLADLIHF------MVGINTQPVSA 327 (620)
Q Consensus 272 ---~~~~~l~~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~p~~~ 327 (620)
=+..+|++...++..- +.++.+-+| ..+..+....+ -....++. .......++.|
T Consensus 345 ~~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (797)
T KOG1343|consen 345 SQLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGGSTSADSSA-LVQDQLEQVGLVKEEDEPVRSDEDG 423 (797)
T ss_pred hhhhHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhcccccccCCcchhhhh-hhhhhhhhhhhhhhccccccCCCCC
Confidence 1144555533333221 333444444 11111111100 00011111 11122233332
Q ss_pred CCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCC--CCC-ccCCCCc
Q psy16742 328 RSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCR--PGC-TSGMKSS 404 (620)
Q Consensus 328 ~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~--~~~-~~~~~~~ 404 (620)
-..+ -.+.-...-+-+ +...-..+-....|...+.++.. .....++-| ++. .-..++.
T Consensus 424 ~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~r~~t~~~~gl~~~c 484 (797)
T KOG1343|consen 424 EIGE-DELPAAGMQAPF----------LKQQAEHALSADQAELELAGLDR--------SRSPESPARFTTGLHTGLLGKC 484 (797)
T ss_pred cccc-ccccchhcccch----------hhhhhhhcccccccccccccccc--------cCCcccchhhhccccccccccc
Confidence 2221 111100001111 11111111111112222111111 000000111 000 0112345
Q ss_pred ceeEEEecccCccChhHHHHHHhhCCCceeeccccCCCCCCccccCCCCccccCCchHHHHhhcchhhhhhhhHHH--HH
Q psy16742 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRS--EK 482 (620)
Q Consensus 405 ~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~~~yP~~~~~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~--~~ 482 (620)
+|++.++...-||...|+...-.. ......++... ....-.-+.+.+.|+..+..+.|+...++..+.. ..
T Consensus 485 ~r~at~~el~~vHs~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~ 557 (797)
T KOG1343|consen 485 ERIATLEELQLVHSEAHVLLYGSR-KLLGDLSLKFE------SRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFK 557 (797)
T ss_pred ccccchhhhhhcccchhhcccchh-hhcccccchhh------hhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 677888888899999988772200 00000001100 0011123566677777777777665555443322 22
Q ss_pred HhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCC--CCCCCCCCeE
Q psy16742 483 MRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTR--SIPVPSLTVL 560 (620)
Q Consensus 483 ~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG--~if~D~~~vl 560 (620)
+.+ +| +++|||||||.+..++|||+|||+|+|+++|+.....+||+|+||||||||| .+|+.++.+|
T Consensus 558 ~~~--g~---------avvRppGHha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhhgngtq~~f~~~~~vl 626 (797)
T KOG1343|consen 558 VAS--GF---------AVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHHGNGTQQAFYSDPSVL 626 (797)
T ss_pred hhc--ce---------eEecCCccccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccCCcceeeeeccCcccc
Confidence 221 23 5889999999999999999999999999999998888999999999999999 6999999999
Q ss_pred EeecCC-----ccccchhHHHHHH----hcCCCeeecCCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy16742 561 SSCVPG-----LYMRDYYVLDTAI----SAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHVY 615 (620)
Q Consensus 561 ~lS~~g-----~~~~~~~v~~~~~----~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~a~~~~ 615 (620)
++|.|. +++.++.+.+.++ ..|+. ..+.||.+.|.+.+.+++.+++|+|++|.
T Consensus 627 yislhr~~~G~~fp~~g~~~e~g~~~g~g~~vN--v~~~~~~~~D~ey~~a~~~vv~Pia~~F~ 688 (797)
T KOG1343|consen 627 YISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVN--VAWTGGLDPDAEYLAAFRTVVMPIAYEFN 688 (797)
T ss_pred ccccchhccCCcCCCCCCchhcccccccceeec--ccccCCCCCCHHHHHHHHHhhHHHHHHhC
Confidence 999874 4566655544332 33333 33445555599999999999999999996
No 6
>KOG1342|consensus
Probab=100.00 E-value=1.8e-36 Score=315.06 Aligned_cols=283 Identities=18% Similarity=0.217 Sum_probs=230.7
Q ss_pred cccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCCh-----
Q psy16742 30 HLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTE----- 103 (620)
Q Consensus 30 ~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~----- 103 (620)
.+.++|++.... +++.+||..|.|++++++++..+||.. ++.+++|.+|+.+|+.++||++||+.+.+.+...
T Consensus 8 ~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k-~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~~~~ 86 (425)
T KOG1342|consen 8 RVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYK-KMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENMETFN 86 (425)
T ss_pred eEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhh-ceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccccccc
Confidence 466888888876 899999999999999999999999998 9999999999999999999999999997754322
Q ss_pred hhhhhcC----cccCHHhHHHHHhccCchhHHHhhcCCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeeeee
Q psy16742 104 KEQKVTG----FEWSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVL 179 (620)
Q Consensus 104 ~~~~~~g----~~~s~~s~e~A~lAaGgti~Aa~~~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~Hh 179 (620)
+++++++ .|+++++++.+++.+||||.||..++-+
T Consensus 87 ~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~----------------------------------------- 125 (425)
T KOG1342|consen 87 KELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRG----------------------------------------- 125 (425)
T ss_pred hHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCC-----------------------------------------
Confidence 2344433 3889999999999999999997655544
Q ss_pred CCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcccc
Q psy16742 180 ADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQ 259 (620)
Q Consensus 180 Gngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~ 259 (620)
...++.+ |+||.|
T Consensus 126 ----------------------------------------------------------~~dIaIN-------W~GGlH-- 138 (425)
T KOG1342|consen 126 ----------------------------------------------------------ECDIAIN-------WAGGLH-- 138 (425)
T ss_pred ----------------------------------------------------------CceEEEe-------cCcccc--
Confidence 2333444 555555
Q ss_pred cccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccccCC
Q psy16742 260 HDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFTG 339 (620)
Q Consensus 260 ~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 339 (620)
||++ ++++
T Consensus 139 --------------------------------------------------------------------HAKK----~eAS 146 (425)
T KOG1342|consen 139 --------------------------------------------------------------------HAKK----SEAS 146 (425)
T ss_pred --------------------------------------------------------------------cccc----cccC
Confidence 5555 9999
Q ss_pred CeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccCh
Q psy16742 340 PICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDG 419 (620)
Q Consensus 340 g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~g 419 (620)
||||+ |||+ ++|.+++ +..+||+||| +|+|||
T Consensus 147 GFCYv-----------------------NDIV------L~ILeLl-----------------K~h~RVLYID--IDvHHG 178 (425)
T KOG1342|consen 147 GFCYV-----------------------NDIV------LGILELL-----------------KYHKRVLYID--IDVHHG 178 (425)
T ss_pred cceee-----------------------hHHH------HHHHHHH-----------------HhCCceEEEE--ecccCC
Confidence 99999 9999 9999995 3567999999 999999
Q ss_pred hHHHHHHhhCCCceeeccccC--CCCCCcccc----------CCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcc
Q psy16742 420 DGTAFIFDKDPAVFTFSMHCG--RNYPFRKQC----------SDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNG 487 (620)
Q Consensus 420 ng~~~if~~~p~v~t~S~H~~--~~yP~~~~~----------~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~ 487 (620)
||+|+.|+..++|+|+|+|.. ..||.++.. ..+|+||..|..|..|..+ +.-.. ..+.+.++
T Consensus 179 DGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~i-f~pIi--~~v~e~f~--- 252 (425)
T KOG1342|consen 179 DGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESI-FKPII--SKVMERFQ--- 252 (425)
T ss_pred ccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHH-HHHHH--HHHHHHhC---
Confidence 999999999999999999985 478987543 2479999999999999998 54333 33445555
Q ss_pred hhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCc
Q psy16742 488 IFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGL 567 (620)
Q Consensus 488 ~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~ 567 (620)
|. .+|++++++.-.| |+++.|+||+.|.
T Consensus 253 ----------------------P~--------------------------AiVLQCGaDSL~g----DRlgcFnLsi~Gh 280 (425)
T KOG1342|consen 253 ----------------------PE--------------------------AIVLQCGADSLAG----DRLGCFNLSIKGH 280 (425)
T ss_pred ----------------------Cc--------------------------eEEEEcCCccccC----CccceeeecchhH
Confidence 77 8999999998888 9999999999886
Q ss_pred cccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHHH
Q psy16742 568 YMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQT 605 (620)
Q Consensus 568 ~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h~ 605 (620)
.+.- +..+++|+|+..+.||||+. ..+++.+.
T Consensus 281 ~~Cv----~fvksfn~pllvlGGGGYT~--rNVARcWt 312 (425)
T KOG1342|consen 281 AECV----KFVKSFNLPLLVLGGGGYTL--RNVARCWT 312 (425)
T ss_pred HHHH----HHHHHcCCcEEEecCCccch--hhhHHHHH
Confidence 5444 55567799999999999976 55555543
No 7
>KOG1344|consensus
Probab=99.96 E-value=1.9e-29 Score=248.11 Aligned_cols=286 Identities=25% Similarity=0.339 Sum_probs=233.8
Q ss_pred CccccEEeCccccc---cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCChh
Q psy16742 28 LVHLPIIHTNKYEC---TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTEK 104 (620)
Q Consensus 28 ~m~~~ivy~p~y~~---~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~~ 104 (620)
+.+++|||++.|.. .+...|||+..|+..|++.|.+.++++ ...+++|.++|.|+|++|||++|++.++..- .-.
T Consensus 13 ~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~-d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~-~vA 90 (324)
T KOG1344|consen 13 AGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLT-DETLVEPNEATKEDLLRVHTRKYLKSLRWSI-KVA 90 (324)
T ss_pred cccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhcccc-ccccccCcccCHHHHHhHhhHHHHHHhhccc-eee
Confidence 34689999999997 567889999999999999999999998 8889999999999999999999999997632 111
Q ss_pred hhhh---cCc-c---cCHHhHHHHHhccCchhHHHhhcCCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeee
Q psy16742 105 EQKV---TGF-E---WSAGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAA 177 (620)
Q Consensus 105 ~~~~---~g~-~---~s~~s~e~A~lAaGgti~Aa~~~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~ 177 (620)
...+ .++ | +........++.+||||.|+.
T Consensus 91 ~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~k-------------------------------------------- 126 (324)
T KOG1344|consen 91 QITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAK-------------------------------------------- 126 (324)
T ss_pred EEEeccccccCchhhhhhhhccceeeccCceeehhh--------------------------------------------
Confidence 1111 122 2 255667788899999998731
Q ss_pred eeCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcc
Q psy16742 178 VLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDP 257 (620)
Q Consensus 178 HhGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~ 257 (620)
-++ +.|++.+ +.||.|
T Consensus 127 ---------------------LAl------------------------------------e~GWAIN-------vGGGFH 142 (324)
T KOG1344|consen 127 ---------------------LAL------------------------------------ERGWAIN-------VGGGFH 142 (324)
T ss_pred ---------------------hhh------------------------------------hcCeEEe-------ecCccc
Confidence 012 5788888 889999
Q ss_pred cccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCcccccc
Q psy16742 258 HQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQF 337 (620)
Q Consensus 258 ~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 337 (620)
|+. . +.
T Consensus 143 -----------------------------Hcs----------------------------------------s-----~r 148 (324)
T KOG1344|consen 143 -----------------------------HCS----------------------------------------S-----SR 148 (324)
T ss_pred -----------------------------eec----------------------------------------c-----CC
Confidence 555 3 78
Q ss_pred CCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCcc
Q psy16742 338 TGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCY 417 (620)
Q Consensus 338 ~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH 417 (620)
++|||.+ .||. ++|..+ -+.....|+.|+| +|.|
T Consensus 149 GGGFC~y-----------------------ADIt------l~I~~l---------------Fer~~isr~mivD--LDAH 182 (324)
T KOG1344|consen 149 GGGFCAY-----------------------ADIT------LAIFFL---------------FERKAISRAMIVD--LDAH 182 (324)
T ss_pred CCceeeh-----------------------hhHH------HHHHHH---------------HhhhhhhheEEEe--cccc
Confidence 9999999 9999 999998 4556689999999 9999
Q ss_pred ChhHHHHHHhhCCCceeeccccCCCCCCc---cccCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhc
Q psy16742 418 DGDGTAFIFDKDPAVFTFSMHCGRNYPFR---KQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLR 494 (620)
Q Consensus 418 ~gng~~~if~~~p~v~t~S~H~~~~yP~~---~~~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (620)
||||.+.-|.++ .|..+.+....-||.. ++.++.-+.+..||.+..|+.. ..... .+...+++
T Consensus 183 QGNghErdf~~~-~vyi~d~ynr~iyp~D~~Ak~~Ir~kVEl~~gTeddeYLrk-l~r~l--~~sl~ef~---------- 248 (324)
T KOG1344|consen 183 QGNGHERDFEDD-AVYIFDMYNRFIYPRDHVAKESIRCKVELRNGTEDDEYLRK-LKRCL--MQSLAEFR---------- 248 (324)
T ss_pred cCCccccccccc-eeehhhhhhhhccchhHHHHHHhhheeeeecCCCchHHHHH-HHHHH--HHHHHhhC----------
Confidence 999999999987 6777777766677743 4455667889999999999988 44333 44455665
Q ss_pred cCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCccccchhH
Q psy16742 495 LSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYV 574 (620)
Q Consensus 495 ~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v 574 (620)
|| ++|+..+.+--+| ||+|.|.+|.+|+-.+|..|
T Consensus 249 ---------------Pd--------------------------~VvYNAGTDiLeG----DpLG~L~ISp~Gi~~RDelV 283 (324)
T KOG1344|consen 249 ---------------PD--------------------------MVVYNAGTDILEG----DPLGNLAISPEGIIERDELV 283 (324)
T ss_pred ---------------Cc--------------------------EEEEeCCCccccC----CCCCCeeecccccchhhHHH
Confidence 88 9999999988888 99999999999999999999
Q ss_pred HHHHHhcCCCeeecCCCCChhhHHHHHH
Q psy16742 575 LDTAISAGIPVATVTGGGYCADIDQLAQ 602 (620)
Q Consensus 575 ~~~~~~~niPl~~~~gGGY~~~~~~lv~ 602 (620)
+...+.+|||+++.++|||++....+++
T Consensus 284 Fr~~R~~~iPvvMltSGGY~K~sArvIa 311 (324)
T KOG1344|consen 284 FRTFRALGIPVVMLTSGGYLKASARVIA 311 (324)
T ss_pred HHHHHHcCCcEEEEecCceehhhhhhhH
Confidence 9999999999999999999997666554
No 8
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=99.95 E-value=3.9e-29 Score=263.30 Aligned_cols=188 Identities=24% Similarity=0.283 Sum_probs=130.0
Q ss_pred EEecccCccChhHHHHHHhhCCCceeeccccCCCCCCccccCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcch
Q psy16742 409 IMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGI 488 (620)
Q Consensus 409 ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~~~yP~~~~~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~ 488 (620)
-.+.++.||+.+|++.+....+.......-.....+ ....+.|+|+++++++++.+++|+.+.+++.++.++.++ +
T Consensus 39 ~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~~--~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~--~ 114 (311)
T PF00850_consen 39 TDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEFP--NILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKN--A 114 (311)
T ss_dssp -HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHHC--CBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSE--E
T ss_pred CHHHHHHcCCHHHHHHHHHhcccccccccccccccc--cccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccc--e
Confidence 344458999999999998754322100000000000 001267999999999999999999999988777654432 3
Q ss_pred hhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCC--CCCCCCCCeEEeecCC
Q psy16742 489 FLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTR--SIPVPSLTVLSSCVPG 566 (620)
Q Consensus 489 ~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG--~if~D~~~vl~lS~~g 566 (620)
| +++|||||||.+++++|||+|||+|||+++|+++++.+||+|||||+||||| ++|++++++|++|+|+
T Consensus 115 ~---------a~~rppgHHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~ 185 (311)
T PF00850_consen 115 F---------ALVRPPGHHAERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQ 185 (311)
T ss_dssp E---------EEESS--TT-BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE
T ss_pred e---------eecCccccccCcCcCcceeeeccHHHHHHHHhhccccceEEEEEeCCCCcccchhheeCCCCEEecCccc
Confidence 4 4779999999999999999999999999999998888999999999999999 7999999999999886
Q ss_pred ----ccc-cchhHHHHH------HhcCCCeeecCCCCChhhHHHHHHHHHHHHHHHHHH
Q psy16742 567 ----LYM-RDYYVLDTA------ISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHV 614 (620)
Q Consensus 567 ----~~~-~~~~v~~~~------~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~a~~~ 614 (620)
+|| +++...+.+ ..+|||++.+++ +.+.+..+..++.|++.+|
T Consensus 186 ~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~-----d~~y~~~~~~~l~~~~~~f 239 (311)
T PF00850_consen 186 YPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTG-----DDEYLEAFEEILLPALEEF 239 (311)
T ss_dssp -CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEB-----HHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcCCCccccCCCcccceeEecccccccc-----hHHHHHHHhhccccchhcc
Confidence 588 787777653 457888887544 4466666777777887776
No 9
>KOG1343|consensus
Probab=99.95 E-value=2.9e-28 Score=279.04 Aligned_cols=231 Identities=19% Similarity=0.184 Sum_probs=180.0
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhc----CCCChhhhh---hcCcccCHHh
Q psy16742 45 PNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN----GKTTEKEQK---VTGFEWSAGL 117 (620)
Q Consensus 45 ~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~----~~~~~~~~~---~~g~~~s~~s 117 (620)
..||++|.|+- -.+. .|+.. +|+.+ ||.++|..||+..|+..+.. ...+..... -.+....+.+
T Consensus 463 ~~~~~~p~r~~---t~~~-~gl~~-~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt 533 (797)
T KOG1343|consen 463 SRSPESPARFT---TGLH-TGLLG-KCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDT 533 (797)
T ss_pred cCCcccchhhh---cccc-ccccc-ccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccH
Confidence 36889999922 2222 78877 78776 99999999999999998531 111111111 1233457777
Q ss_pred HHHHHhccCchhHHHh--------hcCCCc----CCCCccccchh---hhhHHHHHHHHHHHh-CCCCeEEEEeeeeeCC
Q psy16742 118 ASRVRTDPVPTHVIAV--------YLPFFL----QRRPVFFDIAA---VLADLICIAVYLTFF-LQRRPVFFDIAAVLAD 181 (620)
Q Consensus 118 ~e~A~lAaGgti~Aa~--------~~~Gg~----~GHHA~~d~a~---ifNnvAiAa~~l~~~-~~~RVlIVD~D~HhGn 181 (620)
|.....++|++..++. ...|.. +||||....++ +|||+|+|+++++.. ..+||+|+|||+||||
T Consensus 534 ~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppGHha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhhgn 613 (797)
T KOG1343|consen 534 WWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHHGN 613 (797)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCccccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccCCc
Confidence 7777777777666652 122222 69999998876 999999999985544 5899999999999999
Q ss_pred C---------------cceec--------------------CC--cc------CChHHHHHHHHHHHHhHHhhcCCCEEE
Q psy16742 182 L---------------IHFMV--------------------GI--NT------QPVSGYQATLKEHLPGILAQFKPDLVI 218 (620)
Q Consensus 182 g---------------ih~~~--------------------G~--n~------~gD~~Yl~a~~~vl~pil~~F~PdlIl 218 (620)
| +|... |+ |+ -+|.+|+.+++.+++|+.++|+||+|+
T Consensus 614 gtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd~Vl 693 (797)
T KOG1343|consen 614 GTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPDLVL 693 (797)
T ss_pred ceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCCeEE
Confidence 8 22110 22 22 268999999999999999999999999
Q ss_pred EecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcccccccccccccc------cccchhhccCCCCCCCc
Q psy16742 219 YDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLT------DHGVKYILNDRTDPVPT 286 (620)
Q Consensus 219 vSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~~~~~------~~~~~~~l~~~~~~~~~ 286 (620)
||+|||+..+||||+..+|.++|..+ +++|+.+|||++..++| |++|+| .++++++||++..|++.
T Consensus 694 vSagfDaa~~dplg~~~vt~~~~~~l-t~~l~~lagGRvv~~LE-ggy~lt~is~s~~~~~~~llg~~~p~~~~ 765 (797)
T KOG1343|consen 694 VSAGFDAAEGDPLGGYKVTAECFGYL-TQQLMGLAGGRVVLALE-GGYDLTAISDSAEACVRALLGDSLPPLSE 765 (797)
T ss_pred EeccccccccCccccccccHhHHHHH-HHHHHHhcCCcEEEEec-CCcchhhhhHHHHHHHHhccCCCCCCccc
Confidence 99999999999999999999999998 89999999999999999 778888 78899999999988766
No 10
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=2.2e-28 Score=259.54 Aligned_cols=162 Identities=25% Similarity=0.325 Sum_probs=134.3
Q ss_pred ccCccChhHHHHHHhhCCCceeeccccCCCCCCccccCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhh
Q psy16742 413 GLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFL 492 (620)
Q Consensus 413 ~ldvH~gng~~~if~~~p~v~t~S~H~~~~yP~~~~~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~ 492 (620)
++.+|..+|++++....+.. . +...+.|+|++++|++++.+++|+++.+++.++.++ . .+|
T Consensus 57 l~~vH~~~yv~~l~~~~~~~--------~-----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~-~--~~~--- 117 (340)
T COG0123 57 LLLVHSPDYVEFLESLSEEE--------G-----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE-D--NAF--- 117 (340)
T ss_pred HHhhCCHHHHHHHHHhcccc--------c-----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-c--ceE---
Confidence 37899999999999876541 0 224678999999999999999999999977666543 1 233
Q ss_pred hccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCC--CCCCCCCCeEEeecCC----
Q psy16742 493 LRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTR--SIPVPSLTVLSSCVPG---- 566 (620)
Q Consensus 493 ~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG--~if~D~~~vl~lS~~g---- 566 (620)
+++|||||||++++++|||+|||+|||+++|+++ +.+||+|||||+||||| +||||+++++.+|+|+
T Consensus 118 ------~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~ 190 (340)
T COG0123 118 ------ALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRP 190 (340)
T ss_pred ------EECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCC
Confidence 3669999999999999999999999999999999 78899999999999999 6999999999999987
Q ss_pred ccccchhHHHH-----HHhcCCCeeecCC-CCChhhHHHH
Q psy16742 567 LYMRDYYVLDT-----AISAGIPVATVTG-GGYCADIDQL 600 (620)
Q Consensus 567 ~~~~~~~v~~~-----~~~~niPl~~~~g-GGY~~~~~~l 600 (620)
+||+++...+. +.++|||++.+++ ..|...++.+
T Consensus 191 ~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a~~~~ 230 (340)
T COG0123 191 FYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEALEEI 230 (340)
T ss_pred CCCcCCCccccccCcccceEeeecCCCCCcHHHHHHHHHH
Confidence 48888774433 3568999998887 6666655553
No 11
>PTZ00346 histone deacetylase; Provisional
Probab=99.95 E-value=2.9e-28 Score=262.97 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=108.4
Q ss_pred HHhHHHHHhccCchhHHHhhcCCCcCCCCccccchh---hhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCC---------
Q psy16742 115 AGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADL--------- 182 (620)
Q Consensus 115 ~~s~e~A~lAaGgti~Aa~~~~Gg~~GHHA~~d~a~---ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGng--------- 182 (620)
-++..+|.....|....|.+++|| +|||.+++|+ +|||+||||+++++. .+||+|||||+|||||
T Consensus 129 Ggsl~Aa~~v~~g~~~~Ai~~pGG--~HHA~~~~a~GFC~fNdvAIAa~~ll~~-~~RVliID~DVHHGnGTqeiF~~dp 205 (429)
T PTZ00346 129 SGTLMGAVLLNSGQVDVAVHWGGG--MHHSKCGECSGFCYVNDIVLGILELLKC-HDRVLYVDIDMHHGDGVDEAFCTSD 205 (429)
T ss_pred HHHHHHHHHHHcCCCCEEEeCCCC--cCcCCCCCCCcchHHhHHHHHHHHHHHc-CCeEEEEeCCCCCCchHHHHHcCCC
Confidence 356777777766655555677776 7999999998 999999999986664 4899999999999998
Q ss_pred ------ccee----c---------C------C--cc-----CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCC
Q psy16742 183 ------IHFM----V---------G------I--NT-----QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE 230 (620)
Q Consensus 183 ------ih~~----~---------G------~--n~-----~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~Dp 230 (620)
+|+. + | + |+ ++|++|+.+|+++|.|++++|+||+||||||||+|++||
T Consensus 206 ~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~Dp 285 (429)
T PTZ00346 206 RVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDR 285 (429)
T ss_pred CeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCC
Confidence 5533 1 1 2 33 589999999999999999999999999999999999999
Q ss_pred CCCcccCHHHHHhh
Q psy16742 231 LGKLNLTDHGECIS 244 (620)
Q Consensus 231 LG~l~LT~~g~~~~ 244 (620)
||+|+||.+||.++
T Consensus 286 Lg~l~LT~~g~~~~ 299 (429)
T PTZ00346 286 LGLLNLSSFGHGQC 299 (429)
T ss_pred CCCceeCHHHHHHH
Confidence 99999999999987
No 12
>PTZ00063 histone deacetylase; Provisional
Probab=99.94 E-value=8.1e-27 Score=253.13 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=125.9
Q ss_pred HHhHHHHHhccCchhHHHhhcCCCcCCCCccccchh---hhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCC---------
Q psy16742 115 AGLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADL--------- 182 (620)
Q Consensus 115 ~~s~e~A~lAaGgti~Aa~~~~Gg~~GHHA~~d~a~---ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGng--------- 182 (620)
-++..+|....-+...-|.+++|| .|||.+++|+ +|||+||||+++++.. +||+|||||+|||||
T Consensus 112 Ggsl~Aa~~l~~g~~~iAin~~GG--~HHA~~~~A~GFC~~NdiaiAi~~L~~~~-~RVliID~DvHHGdGtqe~F~~~~ 188 (436)
T PTZ00063 112 GASIDGAYKLNNHQADICVNWSGG--LHHAKRSEASGFCYINDIVLGILELLKYH-ARVMYIDIDVHHGDGVEEAFYVTH 188 (436)
T ss_pred hHHHHHHHHHHcCCCCEEeeCCCC--CCCCccCCCCceeeecHHHHHHHHHHHhC-CeEEEEeCCCCCCcchHHHhccCC
Confidence 356677776655544445577777 7999999998 9999999999876654 899999999999998
Q ss_pred ------ccee--c----------C------C--cc-----CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCC
Q psy16742 183 ------IHFM--V----------G------I--NT-----QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDEL 231 (620)
Q Consensus 183 ------ih~~--~----------G------~--n~-----~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpL 231 (620)
+|+. + | + |+ ++|++|+.+|+++|.|++++|+||+||+|||||+|.+|||
T Consensus 189 ~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpL 268 (436)
T PTZ00063 189 RVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRL 268 (436)
T ss_pred CeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCC
Confidence 4542 1 1 1 33 5899999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHhhccccccccCCCcccccccccccccc--cccc----hhhcc---CCCCCCCchhh
Q psy16742 232 GKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLT--DHGV----KYILN---DRTDPVPTHVI 289 (620)
Q Consensus 232 G~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~~~~~--~~~~----~~~l~---~~~~~~~~~~~ 289 (620)
|+|+||.+||+++.. .+.++ ++ .......|+|+++ +.|+ +.+|+ +..+.+|.|.+
T Consensus 269 g~l~Lt~~g~~~~~~-~~~~~-~~-pil~l~gGGY~~~~lar~w~~~t~~~~~~~~~~~~~iP~~~~ 332 (436)
T PTZ00063 269 GRFNLTIKGHAACVE-FVRSL-NI-PLLVLGGGGYTIRNVARCWAYETGVILNKHDEMSDQISLNDY 332 (436)
T ss_pred CCcccCHHHHHHHHH-HHHhc-CC-CEEEEeCccCCchHHHHHHHHHHHHHhCCcccCCccCCCCcc
Confidence 999999999998722 22222 22 2233334555554 3333 44555 35667777654
No 13
>KOG1342|consensus
Probab=99.86 E-value=3.5e-22 Score=208.76 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=136.2
Q ss_pred cCccChhHHHHHHhhCCCceeeccccCCCCCCccccCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhh
Q psy16742 414 LPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLL 493 (620)
Q Consensus 414 ldvH~gng~~~if~~~p~v~t~S~H~~~~yP~~~~~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~ 493 (620)
..+|+.+|++++....|+-... ++.. ..+.....|+|+++|.++-+.+.+|+++.++.. + |.+
T Consensus 63 ~~FHt~eYi~fL~~V~p~n~~~-~~~~----~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~k-L-----n~~------ 125 (425)
T KOG1342|consen 63 TRFHTDEYINFLQSVTPENMET-FNKE----LKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQK-L-----NRG------ 125 (425)
T ss_pred HhhchHHHHHHHhhCCcccccc-cchH----HHhcCCCCCCccccCHHHHHHHhcccchHHHHH-h-----CCC------
Confidence 6899999999999887765411 1110 112246689999999999999999999988432 2 111
Q ss_pred ccCCCccc-cCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCC--CCCCCCCCeEEeecC----C
Q psy16742 494 RLSDPEIN-RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTR--SIPVPSLTVLSSCVP----G 566 (620)
Q Consensus 494 ~~~~~~i~-rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG--~if~D~~~vl~lS~~----g 566 (620)
.++.+|| .||.|||+++.|+|||++|||+++|..|+|.++ ||++||+|+||||| ++|+...+||++|.| +
T Consensus 126 -~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~h~--RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~ 202 (425)
T KOG1342|consen 126 -ECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHK--RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPG 202 (425)
T ss_pred -CceEEEecCcccccccccccCcceeehHHHHHHHHHHHhCC--ceEEEEecccCCccHHHHHhccceeEEEEEEeccCC
Confidence 2346788 899999999999999999999999999999985 89999999999999 799999999999987 4
Q ss_pred ccccchhHHHHHH------hcCCCeeecCC-CCChhhHHHHHHH
Q psy16742 567 LYMRDYYVLDTAI------SAGIPVATVTG-GGYCADIDQLAQR 603 (620)
Q Consensus 567 ~~~~~~~v~~~~~------~~niPl~~~~g-GGY~~~~~~lv~~ 603 (620)
|||+|+.+.+.+. ++|+||-.+.. ..|..-++.++..
T Consensus 203 fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pIi~~ 246 (425)
T KOG1342|consen 203 FFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPIISK 246 (425)
T ss_pred CCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHHHHH
Confidence 8999999987653 57999998877 5555555554443
No 14
>KOG1344|consensus
Probab=99.60 E-value=1.1e-15 Score=151.31 Aligned_cols=109 Identities=26% Similarity=0.285 Sum_probs=92.4
Q ss_pred hcCCCcCCCCccccchh---hhhHHHHHHHH-HHHhCCCCeEEEEeeeeeCCC-----------cceecC----------
Q psy16742 134 YLPFFLQRRPVFFDIAA---VLADLICIAVY-LTFFLQRRPVFFDIAAVLADL-----------IHFMVG---------- 188 (620)
Q Consensus 134 ~~~Gg~~GHHA~~d~a~---ifNnvAiAa~~-l~~~~~~RVlIVD~D~HhGng-----------ih~~~G---------- 188 (620)
|+.|| .||+..++++ .+.|+.+|+.. ..+..+.|++|||+|+|+||| +..+|+
T Consensus 136 NvGGG--FHHcss~rGGGFC~yADItl~I~~lFer~~isr~mivDLDAHQGNghErdf~~~~vyi~d~ynr~iyp~D~~A 213 (324)
T KOG1344|consen 136 NVGGG--FHHCSSSRGGGFCAYADITLAIFFLFERKAISRAMIVDLDAHQGNGHERDFEDDAVYIFDMYNRFIYPRDHVA 213 (324)
T ss_pred eecCc--cceeccCCCCceeehhhHHHHHHHHHhhhhhhheEEEecccccCCccccccccceeehhhhhhhhccchhHHH
Confidence 45555 7999999987 89999999975 444559999999999999998 222221
Q ss_pred ---C-------ccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhh
Q psy16742 189 ---I-------NTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECIS 244 (620)
Q Consensus 189 ---~-------n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~ 244 (620)
+ |-+.|++|+..+++.++..+++|+||+|+++||.|.+.|||||.+.+|++|+..+
T Consensus 214 k~~Ir~kVEl~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~R 279 (324)
T KOG1344|consen 214 KESIRCKVELRNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIER 279 (324)
T ss_pred HHHhhheeeeecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchh
Confidence 1 1168999999999999999999999999999999999999999999999998766
No 15
>KOG0121|consensus
Probab=52.23 E-value=13 Score=35.10 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=31.3
Q ss_pred CCCCceeeee-----chHHHHHHHHHHcCCccEEEEEEecccCCCC
Q psy16742 510 PDHGAGFCLM-----NDMALAARYLIRHGIVRKVLIVDLDVHQHTR 550 (620)
Q Consensus 510 pd~a~GFC~~-----Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG 550 (620)
.-.++|||++ .+.-.|++|+-.-...+|++-+|||.=--+|
T Consensus 74 kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eG 119 (153)
T KOG0121|consen 74 KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEG 119 (153)
T ss_pred CcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhh
Confidence 4578999997 3666788888777777789999998755444
No 16
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.86 E-value=79 Score=30.31 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHhhcCCCEEEEecCC-CccCCCCCCCcccCHHHHHhh
Q psy16742 195 SGYQATLKEHLPGILAQFKPDLVIYDAGV-DPHQHDELGKLNLTDHGECIS 244 (620)
Q Consensus 195 ~~Yl~a~~~vl~pil~~F~PdlIlvSAGf-Da~~~DpLG~l~LT~~g~~~~ 244 (620)
.+++..++..+.+.+..++||+|+|..|. |...++.. ....+.+.|...
T Consensus 51 ~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~ 100 (193)
T cd01835 51 EDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFG 100 (193)
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCc-ccccCHHHHHHH
Confidence 35666777776666666899999999999 77665321 223455555543
No 17
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=29.71 E-value=74 Score=33.34 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcc
Q psy16742 198 QATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDP 257 (620)
Q Consensus 198 l~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~ 257 (620)
+.++++.|+.+-+++++|+||+++ ..--|+..||++-|..+-.+=+.+..+|-|
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~~~L~~~GvDviT~GNH 65 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIAEELFKAGVDVITMGNH 65 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHHHHHHHHT-SEEE--TT
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHHHHHHhcCCCEEecCcc
Confidence 567888999999999999999986 445678999999999985555666667766
No 18
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=28.82 E-value=64 Score=34.21 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=21.8
Q ss_pred HHHHhHHhhcCCCEEEEecCCCccCCCC
Q psy16742 203 EHLPGILAQFKPDLVIYDAGVDPHQHDE 230 (620)
Q Consensus 203 ~vl~pil~~F~PdlIlvSAGfDa~~~Dp 230 (620)
+.+.+++++++||++++ .|=|+...+.
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~ 169 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNK 169 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCC
Confidence 67889999999997765 7889887554
No 19
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=28.77 E-value=91 Score=29.72 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHhhcCCCEEEEecCC
Q psy16742 199 ATLKEHLPGILAQFKPDLVIYDAGV 223 (620)
Q Consensus 199 ~a~~~vl~pil~~F~PdlIlvSAGf 223 (620)
..+.+.+..+..+.+.|+||+.++-
T Consensus 78 ~~~~~~~~~~~~~~~~d~viiDtpp 102 (179)
T cd03110 78 TEVRKHAKEIAKAEGAELIIIDGPP 102 (179)
T ss_pred HHHHHHHHHhhhhcCCCEEEEECcC
Confidence 3444444444556789999998863
No 20
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=25.21 E-value=47 Score=36.88 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=15.9
Q ss_pred HHhHHhhcCCCEEEEecCCCccCC
Q psy16742 205 LPGILAQFKPDLVIYDAGVDPHQH 228 (620)
Q Consensus 205 l~pil~~F~PdlIlvSAGfDa~~~ 228 (620)
+..++++++|.+|+ ||+-++-.
T Consensus 158 ~~k~a~e~kPK~ii--~G~SaY~r 179 (413)
T COG0112 158 VEKLAKEVKPKLII--AGGSAYSR 179 (413)
T ss_pred HHHHHHHhCCCEEE--ECcccccc
Confidence 34678899999988 56666543
No 21
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.83 E-value=1.7e+02 Score=25.72 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCeEEEEeeeeeCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecC
Q psy16742 159 AVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAG 222 (620)
Q Consensus 159 a~~l~~~~~~RVlIVD~D~HhGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAG 222 (620)
+.++++.|. .|-++|.++.. +.+...+.+++||+|.+|+-
T Consensus 21 a~~l~~~G~-~v~~~d~~~~~-----------------------~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 21 AAYLRKAGH-EVDILDANVPP-----------------------EELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHTTB-EEEEEESSB-H-----------------------HHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHCCC-eEEEECCCCCH-----------------------HHHHHHHhcCCCcEEEEEcc
Confidence 344666554 66677777742 34455677889999999985
No 22
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.16 E-value=94 Score=33.11 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=21.9
Q ss_pred HHHHhHHhhcCCCEEEEecCCCccCCCC
Q psy16742 203 EHLPGILAQFKPDLVIYDAGVDPHQHDE 230 (620)
Q Consensus 203 ~vl~pil~~F~PdlIlvSAGfDa~~~Dp 230 (620)
+.+..++++++||++++ .|=|+...+.
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~ 170 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNK 170 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCC
Confidence 67888999999997765 7888876665
Done!