Query psy16742
Match_columns 620
No_of_seqs 360 out of 2654
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 100.0 5E-49 1.7E-53 422.9 19.5 257 28-287 35-388 (421)
2 2vqm_A HD4, histone deacetylas 100.0 2.1E-48 7.1E-53 421.2 15.6 259 27-288 6-360 (413)
3 1c3p_A Protein (HDLP (histone 100.0 2.9E-48 1E-52 415.2 15.2 227 30-257 3-298 (375)
4 1zz1_A Histone deacetylase-lik 100.0 7.8E-48 2.7E-52 411.1 16.6 294 29-608 1-328 (369)
5 3ew8_A HD8, histone deacetylas 100.0 7.5E-46 2.6E-50 395.9 18.9 291 29-328 14-384 (388)
6 4a69_A Histone deacetylase 3,; 100.0 4.8E-45 1.6E-49 389.6 19.3 286 30-609 4-312 (376)
7 3max_A HD2, histone deacetylas 100.0 8.4E-45 2.9E-49 386.1 18.5 287 30-610 4-312 (367)
8 3q9b_A Acetylpolyamine amidohy 100.0 3.3E-45 1.1E-49 385.7 13.1 232 31-270 1-327 (341)
9 3men_A Acetylpolyamine aminohy 100.0 1.8E-43 6E-48 374.7 15.2 283 27-606 18-355 (362)
10 1zz1_A Histone deacetylase-lik 100.0 3.1E-30 1.1E-34 275.4 5.7 174 411-614 70-256 (369)
11 4a69_A Histone deacetylase 3,; 100.0 4.1E-29 1.4E-33 266.8 8.6 166 116-287 110-326 (376)
12 1c3p_A Protein (HDLP (histone 99.9 2.1E-28 7.3E-33 261.8 11.7 197 300-611 102-313 (375)
13 3men_A Acetylpolyamine aminohy 99.9 3.1E-29 1.1E-33 265.8 2.7 164 412-590 78-272 (362)
14 3q9b_A Acetylpolyamine amidohy 99.9 1.3E-27 4.3E-32 252.1 12.0 173 320-606 151-337 (341)
15 3ew8_A HD8, histone deacetylas 99.9 1.1E-27 3.6E-32 256.1 11.6 196 301-612 112-323 (388)
16 3max_A HD2, histone deacetylas 99.9 9.2E-28 3.1E-32 255.3 9.4 127 116-245 110-279 (367)
17 2pqp_A HD7A, histone deacetyla 99.9 1.2E-26 4E-31 249.6 9.8 180 320-610 180-376 (421)
18 2vqm_A HD4, histone deacetylas 99.9 4.6E-26 1.6E-30 246.6 11.7 192 306-610 131-347 (413)
19 3dff_A Teicoplanin pseudoaglyc 36.6 31 0.0011 34.6 4.7 35 195-229 130-164 (273)
20 3dfi_A Pseudoaglycone deacetyl 34.1 36 0.0012 34.0 4.7 34 196-229 128-161 (270)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=5e-49 Score=422.94 Aligned_cols=257 Identities=16% Similarity=0.137 Sum_probs=215.7
Q ss_pred CccccEEeCcccccc-----CCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCC
Q psy16742 28 LVHLPIIHTNKYECT-----LPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTT 102 (620)
Q Consensus 28 ~m~~~ivy~p~y~~~-----~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~ 102 (620)
.|++.+|||+.|..+ .++.|||+|+|+++|++.|++.|+++ ++++++|++||+|||++|||++||+.+....+.
T Consensus 35 ~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~-~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~ 113 (421)
T 2pqp_A 35 PFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRS-QCECLRGRKASLEELQSVHSERHVLLYGTNPLS 113 (421)
T ss_dssp TTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGG-GSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTC
T ss_pred CCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcc-cCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhh
Confidence 477999999999984 46889999999999999999999998 899999999999999999999999865432211
Q ss_pred -----hhhh-----hh---------c----CcccC-HHhHHHHHhccCchhHHHh-hcCCCc---------CCCCccccc
Q psy16742 103 -----EKEQ-----KV---------T----GFEWS-AGLASRVRTDPVPTHVIAV-YLPFFL---------QRRPVFFDI 148 (620)
Q Consensus 103 -----~~~~-----~~---------~----g~~~s-~~s~e~A~lAaGgti~Aa~-~~~Gg~---------~GHHA~~d~ 148 (620)
.... .+ . ...|+ +.++++|++++|+++.|++ ++.|.. |||||.+++
T Consensus 114 ~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpGHHA~~~~ 193 (421)
T 2pqp_A 114 RLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHST 193 (421)
T ss_dssp SCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTTB
T ss_pred hhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCCCCCCCCC
Confidence 1100 00 1 12455 5899999999999999997 555542 599999999
Q ss_pred hh---hhhHHHHHHHHHH-HhCCCCeEEEEeeeeeCCC---------------ccee-----c---------------CC
Q psy16742 149 AA---VLADLICIAVYLT-FFLQRRPVFFDIAAVLADL---------------IHFM-----V---------------GI 189 (620)
Q Consensus 149 a~---ifNnvAiAa~~l~-~~~~~RVlIVD~D~HhGng---------------ih~~-----~---------------G~ 189 (620)
++ +|||+||||++++ +++++||+|||||+||||| +|+. | |+
T Consensus 194 a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~ 273 (421)
T 2pqp_A 194 AMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGF 273 (421)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTC
T ss_pred CCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccc
Confidence 88 9999999999855 5789999999999999998 6662 1 22
Q ss_pred --cc---------CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCC--CCCCcccCHHHHHhhccccccccCCCc
Q psy16742 190 --NT---------QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD--ELGKLNLTDHGECISSSARISSEAGVD 256 (620)
Q Consensus 190 --n~---------~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~D--pLG~l~LT~~g~~~~~~~~~~~~agg~ 256 (620)
|+ ++|++|+.+|+++|+|++++|+||+||||||||+|++| |||+|+||+++|.++ +.+|+.++||+
T Consensus 274 ~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~-~~~l~~~a~gr 352 (421)
T 2pqp_A 274 NVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYM-TQQLMNLAGGA 352 (421)
T ss_dssp EEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHH-HHHHTTSGGGC
T ss_pred eeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHH-HHHHHHHcCCC
Confidence 22 36999999999999999999999999999999999997 999999999999999 67888899999
Q ss_pred ccccccccccccc------cccchhhccCCCCCCCch
Q psy16742 257 PHQHDELGKLNLT------DHGVKYILNDRTDPVPTH 287 (620)
Q Consensus 257 ~~~~~~~g~~~~~------~~~~~~~l~~~~~~~~~~ 287 (620)
.+..+| |+||+. ..+++++||+.++|+|.-
T Consensus 353 vv~vlE-GGY~l~~l~~~~~a~~~~L~g~~~~~l~~~ 388 (421)
T 2pqp_A 353 VVLALE-GGHDLTAICDASEACVAALLGNRVDPLSEE 388 (421)
T ss_dssp EEEEEC-SCCCHHHHHHHHHHHHHHHTTCCCCGGGCG
T ss_pred EEEEEC-CCCChHHHHHHHHHHHHHHcCCCCCCCccc
Confidence 877777 669987 456799999988888763
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=2.1e-48 Score=421.24 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=209.3
Q ss_pred CCccccEEeCccccc-cCC----CCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCC
Q psy16742 27 RLVHLPIIHTNKYEC-TLP----PNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKT 101 (620)
Q Consensus 27 ~~m~~~ivy~p~y~~-~~~----~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~ 101 (620)
+.|+|++||++.|+. .++ ..|||+|+|+++|++.|++.|+.+ ++++++|++||.|||++|||++||+.++...+
T Consensus 6 p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~-~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~ 84 (413)
T 2vqm_A 6 PRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRG-KCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84 (413)
T ss_dssp CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHH-HSEEECCCCCCHHHHTTTSCHHHHHHHHSCGG
T ss_pred CCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCc-CCeEeCCCCCCHHHHHHhCCHHHHHHHhcCch
Confidence 347899999999998 333 459999999999999999999988 89999999999999999999999988865433
Q ss_pred Chhhhhh----------------c------CcccC-HHhHHHHHhccCchhHHHh-hcCCCc---------CCCCccccc
Q psy16742 102 TEKEQKV----------------T------GFEWS-AGLASRVRTDPVPTHVIAV-YLPFFL---------QRRPVFFDI 148 (620)
Q Consensus 102 ~~~~~~~----------------~------g~~~s-~~s~e~A~lAaGgti~Aa~-~~~Gg~---------~GHHA~~d~ 148 (620)
..++... . +..|+ ..++++|++++|+++.|++ ++.|.. |||||.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppGHHA~~~~ 164 (413)
T 2vqm_A 85 NRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEEST 164 (413)
T ss_dssp GGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCCTTCBTTB
T ss_pred hhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeecccccccCcCCC
Confidence 2211100 0 11233 3789999999999999997 555532 589999999
Q ss_pred hh---hhhHHHHHHHH-HHHhCCCCeEEEEeeeeeCCC---------------ccee----c----------------CC
Q psy16742 149 AA---VLADLICIAVY-LTFFLQRRPVFFDIAAVLADL---------------IHFM----V----------------GI 189 (620)
Q Consensus 149 a~---ifNnvAiAa~~-l~~~~~~RVlIVD~D~HhGng---------------ih~~----~----------------G~ 189 (620)
++ +|||+||||++ +++++++||+|||||+||||| +|+. + |+
T Consensus 165 a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~ 244 (413)
T 2vqm_A 165 PMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244 (413)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTC
T ss_pred CCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCccccc
Confidence 98 99999999998 556789999999999999998 6653 1 22
Q ss_pred cc-----------CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCC--CCCCCcccCHHHHHhhccccccccCCCc
Q psy16742 190 NT-----------QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQH--DELGKLNLTDHGECISSSARISSEAGVD 256 (620)
Q Consensus 190 n~-----------~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~--DpLG~l~LT~~g~~~~~~~~~~~~agg~ 256 (620)
|+ ++|++|+.+|+++|+|++++|+||+||||||||+|++ ||||+|+||++||+++ +++++.++||.
T Consensus 245 ~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~-~~~l~~~a~~~ 323 (413)
T 2vqm_A 245 NVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYL-TKQLMGLAGGR 323 (413)
T ss_dssp EEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHH-HHHHHTSGGGC
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHH-HHHHHHhcCCC
Confidence 22 3699999999999999999999999999999999999 6699999999999999 67788888887
Q ss_pred ccccccccccccc------cccchhhccCCCCCCCchh
Q psy16742 257 PHQHDELGKLNLT------DHGVKYILNDRTDPVPTHV 288 (620)
Q Consensus 257 ~~~~~~~g~~~~~------~~~~~~~l~~~~~~~~~~~ 288 (620)
...-+| |+||++ ...++.+||++.||+|+..
T Consensus 324 ~v~vle-GGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~ 360 (413)
T 2vqm_A 324 IVLALE-GGHDLTAICDASEACVSALLGNELDPLPEKV 360 (413)
T ss_dssp EEEEEC-CCCCHHHHHHHHHHHHHHHTTCCCCCCCHHH
T ss_pred EEEEeC-cCCChHHHHHHHHHHHHHHcCCCCCCCChhh
Confidence 655455 778886 3456899999999999843
No 3
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=2.9e-48 Score=415.20 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=194.7
Q ss_pred cccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCC----Chh
Q psy16742 30 HLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKT----TEK 104 (620)
Q Consensus 30 ~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~----~~~ 104 (620)
++.++|||.|.. .++++|||+|+|++++++.|++.|+++ .+++++|++||.++|++|||++||+.|++... +.+
T Consensus 3 ~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~-~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~~~ 81 (375)
T 1c3p_A 3 KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLID-EKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG 81 (375)
T ss_dssp CEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCC-GGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred eEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCC-CCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCChH
Confidence 478999999998 789999999999999999999999987 88999999999999999999999999976421 112
Q ss_pred hhhhcC-----cccCHHhHHHHHhccCchhHHHh-hcCCCc----CC--CCccccchh---hhhHHHHHHHHHHHhCCCC
Q psy16742 105 EQKVTG-----FEWSAGLASRVRTDPVPTHVIAV-YLPFFL----QR--RPVFFDIAA---VLADLICIAVYLTFFLQRR 169 (620)
Q Consensus 105 ~~~~~g-----~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg~----~G--HHA~~d~a~---ifNnvAiAa~~l~~~~~~R 169 (620)
..+..+ .|++++++++|++++||+|+||+ ++.|+. +| |||.+++++ +|||+||||+++++.+.+|
T Consensus 82 ~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g~~R 161 (375)
T 1c3p_A 82 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR 161 (375)
T ss_dssp HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred HhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHHHHHHHhCCCe
Confidence 223333 38999999999999999999997 555543 46 999999998 9999999999988888899
Q ss_pred eEEEEeeeeeCCC---------------cceec-------------C-------C--cc-----CChHHHHHHHHHHHHh
Q psy16742 170 PVFFDIAAVLADL---------------IHFMV-------------G-------I--NT-----QPVSGYQATLKEHLPG 207 (620)
Q Consensus 170 VlIVD~D~HhGng---------------ih~~~-------------G-------~--n~-----~gD~~Yl~a~~~vl~p 207 (620)
|+|||||+||||| +|+.- | + |+ ++|++|+.+|+++|.|
T Consensus 162 V~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~l~p 241 (375)
T 1c3p_A 162 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI 241 (375)
T ss_dssp EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999998 56541 2 2 22 5899999999999999
Q ss_pred HHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhcc-------ccccccCCCcc
Q psy16742 208 ILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSS-------ARISSEAGVDP 257 (620)
Q Consensus 208 il~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~-------~~~~~~agg~~ 257 (620)
++++|+||+||||||||+|++||||+|+||++||++++. ..+++++||+.
T Consensus 242 ~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~ 298 (375)
T 1c3p_A 242 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYH 298 (375)
T ss_dssp HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCC
T ss_pred HHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCC
Confidence 999999999999999999999999999999999999832 23455566665
No 4
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=7.8e-48 Score=411.11 Aligned_cols=294 Identities=15% Similarity=0.131 Sum_probs=246.2
Q ss_pred ccccEEeCccccc-cCCCC----------------CCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHH
Q psy16742 29 VHLPIIHTNKYEC-TLPPN----------------HRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKE 91 (620)
Q Consensus 29 m~~~ivy~p~y~~-~~~~~----------------HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~ 91 (620)
|++.++|||.|.. .++++ |||+|+|++++++.|++.|+++ .+++++|++||.++|++|||++
T Consensus 1 m~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~-~~~~~~p~~a~~~~l~~vH~~~ 79 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIE-HLTPIAAVAATDADILRAHSAA 79 (369)
T ss_dssp -CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGG-GSEECCCCCCCHHHHHTTSCHH
T ss_pred CeEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCc-cceEeCCCcCCHHHHHHhccHH
Confidence 6789999999998 67777 9999999999999999999987 8899999999999999999999
Q ss_pred HHHHHhcCCCChhhhhhcC---cccCHHhHHHHHhccCchhHHHh-hcCCCcCCCCccccchhhhhHHHHHHHHHHHhCC
Q psy16742 92 YVHKFFNGKTTEKEQKVTG---FEWSAGLASRVRTDPVPTHVIAV-YLPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQ 167 (620)
Q Consensus 92 YI~~l~~~~~~~~~~~~~g---~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~ 167 (620)
||++|++.... +....++ +++++++++++++++||++.||+ ++.|.
T Consensus 80 Yv~~l~~~~~~-~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~----------------------------- 129 (369)
T 1zz1_A 80 HLENMKRVSNL-PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGE----------------------------- 129 (369)
T ss_dssp HHHHHHHHHHS-TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTS-----------------------------
T ss_pred HHHHHHHhCcc-ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCC-----------------------------
Confidence 99999764310 1112233 48999999999999999998854 22222
Q ss_pred CCeEEEEeeeeeCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccc
Q psy16742 168 RRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSA 247 (620)
Q Consensus 168 ~RVlIVD~D~HhGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~ 247 (620)
T Consensus 130 -------------------------------------------------------------------------------- 129 (369)
T 1zz1_A 130 -------------------------------------------------------------------------------- 129 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCC
Q psy16742 248 RISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSA 327 (620)
Q Consensus 248 ~~~~~agg~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 327 (620)
.. +++ |.+|||||
T Consensus 130 --------~~-----------------------------~af------------------------------a~~rppGH 142 (369)
T 1zz1_A 130 --------LS-----------------------------AGY------------------------------ALVNPPGH 142 (369)
T ss_dssp --------CS-----------------------------EEE------------------------------ECCSSCCT
T ss_pred --------Cc-----------------------------ceE------------------------------EEecCCcc
Confidence 00 233 45688889
Q ss_pred CCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCccee
Q psy16742 328 RSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRA 407 (620)
Q Consensus 328 ~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv 407 (620)
||.+ +.++|||+| ||+| |||++++ +....+||
T Consensus 143 HA~~----~~a~GFC~f-----------------------NnvA------iAa~~l~---------------~~~g~~RV 174 (369)
T 1zz1_A 143 HAPH----NAAMGFCIF-----------------------NNTS------VAAGYAR---------------AVLGMERV 174 (369)
T ss_dssp TCCT----TCCBTTBSS-----------------------CHHH------HHHHHHH---------------HTSCCSCE
T ss_pred CcCC----CCCCCchHh-----------------------hHHH------HHHHHHH---------------HhcCCCeE
Confidence 9988 999999999 9999 9999994 34457899
Q ss_pred EEEecccCccChhHHHHHHhhCCCceeeccccCCCCC-Cccc----------cCCCCccccCCchHHHHhhcchhhhhhh
Q psy16742 408 LIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYP-FRKQ----------CSDLDVAIDVGTDDAGNRTVALTWVTFL 476 (620)
Q Consensus 408 ~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~~~yP-~~~~----------~~d~D~pl~~gt~~aa~la~G~~~~~~~ 476 (620)
+||| ||||||||||.+|+++|+|+|+|+|+.++|| +++. ..+.|+||++|+.++.|+.+ +....
T Consensus 175 ~IvD--~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~-~~~~v-- 249 (369)
T 1zz1_A 175 AILD--WDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHA-MDQVV-- 249 (369)
T ss_dssp EEEE--CSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHH-HHHTH--
T ss_pred EEEe--cCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceEEeeecCCCCCHHHHHHH-HHHHH--
Confidence 9999 9999999999999999999999999999999 7653 36789999999999999998 54333
Q ss_pred hHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCC
Q psy16742 477 SQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPS 556 (620)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~ 556 (620)
..+.++|+ |+ ++||++++|...+ |+
T Consensus 250 ~p~l~~f~-------------------------Pd--------------------------lIvvsaG~Da~~~----Dp 274 (369)
T 1zz1_A 250 LPALRAYR-------------------------PQ--------------------------LIIVGSGFDASML----DP 274 (369)
T ss_dssp HHHHHHHC-------------------------CS--------------------------EEEEEECCTTBTT----CT
T ss_pred HHHHHHcC-------------------------CC--------------------------EEEEeCCccCCCC----CC
Confidence 44557776 89 9999998888888 99
Q ss_pred CCeEEeecCCccccchhHHHHHHh-cCCCeeecCCCCChhh-HHHHHHHHHHHH
Q psy16742 557 LTVLSSCVPGLYMRDYYVLDTAIS-AGIPVATVTGGGYCAD-IDQLAQRQTIIH 608 (620)
Q Consensus 557 ~~vl~lS~~g~~~~~~~v~~~~~~-~niPl~~~~gGGY~~~-~~~lv~~h~~~~ 608 (620)
++.|+||.+||..++..+.+.+.. .++|++.++||||+.. +...+..|...+
T Consensus 275 Lg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l 328 (369)
T 1zz1_A 275 LARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEEL 328 (369)
T ss_dssp TCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999877 6999999999999874 666666665543
No 5
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=7.5e-46 Score=395.91 Aligned_cols=291 Identities=16% Similarity=0.090 Sum_probs=215.6
Q ss_pred ccccEEeCccccccCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCC----Chh
Q psy16742 29 VHLPIIHTNKYECTLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKT----TEK 104 (620)
Q Consensus 29 m~~~ivy~p~y~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~----~~~ 104 (620)
-++.+||+|.|... .++|||+|+|+++++++|+++|++. .+++++|++||.++|++|||++||++|++... ...
T Consensus 14 ~~~~~~y~~~~~~~-~~~HPe~P~Rl~~i~~ll~~~gl~~-~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 91 (388)
T 3ew8_A 14 LVPVYIYSPEYVSM-CDSLAKIPKRASMVHSLIEAYALHK-QMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHP 91 (388)
T ss_dssp CCCEEECCHHHHHH-HTTCTTSTTHHHHHHHHHHHTTGGG-GSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-----
T ss_pred CcEEEEEChHHhcc-CCCCCCCcHHHHHHHHHHHHcCCcc-cCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccccccch
Confidence 35789999999974 3579999999999999999999988 89999999999999999999999999976321 111
Q ss_pred hhhhcC----cccCHHhHHHHHhccCchhHHHh-hcCCCc-------CC-CCccccchh---hhhHHHHHHHHHHHhCCC
Q psy16742 105 EQKVTG----FEWSAGLASRVRTDPVPTHVIAV-YLPFFL-------QR-RPVFFDIAA---VLADLICIAVYLTFFLQR 168 (620)
Q Consensus 105 ~~~~~g----~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg~-------~G-HHA~~d~a~---ifNnvAiAa~~l~~~~~~ 168 (620)
..++.+ .|++++++++|++++||+|.||+ ++.|.. +| |||.+++++ +|||+||||+++++. .+
T Consensus 92 ~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~~-~~ 170 (388)
T 3ew8_A 92 DSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK-FE 170 (388)
T ss_dssp ---CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTT-CS
T ss_pred hhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHHhc-CC
Confidence 222333 48999999999999999999997 555532 25 999999998 999999999987754 79
Q ss_pred CeEEEEeeeeeCCC---------------ccee----c---------------CC--cc-----CChHHHHHHHHHHHHh
Q psy16742 169 RPVFFDIAAVLADL---------------IHFM----V---------------GI--NT-----QPVSGYQATLKEHLPG 207 (620)
Q Consensus 169 RVlIVD~D~HhGng---------------ih~~----~---------------G~--n~-----~gD~~Yl~a~~~vl~p 207 (620)
||+|||||+||||| +|+. + |+ |+ ++|++|+.+|+++|.|
T Consensus 171 RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~~l~p 250 (388)
T 3ew8_A 171 RILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKE 250 (388)
T ss_dssp CEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998 6653 1 12 33 5899999999999999
Q ss_pred HHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCcccccccccccccc--ccc----chhhccC-C
Q psy16742 208 ILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLT--DHG----VKYILND-R 280 (620)
Q Consensus 208 il~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~~~~~--~~~----~~~~l~~-~ 280 (620)
++++|+||+||||||||+|++||||+|+||++||+++ ...+..+. ......-.|+|+++ +.| .+.+++. .
T Consensus 251 ~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~-~~~l~~~~--~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l 327 (388)
T 3ew8_A 251 VYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKC-LKYILQWQ--LATLILGGGGYNLANTARCWTYLTGVILGKTL 327 (388)
T ss_dssp HHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHH-HHHHHTTC--CEEEEECCCCCSHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHH-HHHHHhcC--CCEEEEECCCCChhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999997 33333321 12222233666654 333 3555665 4
Q ss_pred CCCCCchhhhhhhhh-------h-----cccCchhhhHHHHHHHHHhhhhccccCCCCCC
Q psy16742 281 TDPVPTHVIAVYLTF-------F-----LQRRPVFFDIAAVLADLIHFMVGINTQPVSAR 328 (620)
Q Consensus 281 ~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 328 (620)
++.+|.+.. ... . ....+.-+....+....+....-+.-.+.+||
T Consensus 328 ~~~lP~~~~---~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~~~~~ 384 (388)
T 3ew8_A 328 SSEIPDHEF---FTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHH 384 (388)
T ss_dssp CSBCCCCTT---GGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC------
T ss_pred CCCCCcccc---hhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 566787732 222 1 11222234455666666666666666666655
No 6
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-45 Score=389.58 Aligned_cols=286 Identities=17% Similarity=0.166 Sum_probs=234.2
Q ss_pred cccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCCh-----
Q psy16742 30 HLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTE----- 103 (620)
Q Consensus 30 ~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~----- 103 (620)
++.++|||+|.. .++++|||+|+|+++++++|+++|++. ++++++|++||.++|++|||++||+.|++.....
T Consensus 4 ~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~-~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 82 (376)
T 4a69_A 4 TVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYK-KMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFT 82 (376)
T ss_dssp CEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGG-GSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGGH
T ss_pred eEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCC-CceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhhh
Confidence 478999999997 889999999999999999999999998 8999999999999999999999999998765432
Q ss_pred hhhhhc----CcccCHHhHHHHHhccCchhHHHhh-cCCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeeee
Q psy16742 104 KEQKVT----GFEWSAGLASRVRTDPVPTHVIAVY-LPFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAV 178 (620)
Q Consensus 104 ~~~~~~----g~~~s~~s~e~A~lAaGgti~Aa~~-~~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~H 178 (620)
+..+.. ++|+++++++++++++||+|.||+. +.|.
T Consensus 83 ~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~---------------------------------------- 122 (376)
T 4a69_A 83 KSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI---------------------------------------- 122 (376)
T ss_dssp HHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTS----------------------------------------
T ss_pred hhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCC----------------------------------------
Confidence 112222 2589999999999999999988531 1211
Q ss_pred eCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCccc
Q psy16742 179 LADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPH 258 (620)
Q Consensus 179 hGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~ 258 (620)
.
T Consensus 123 ------------------------------------------------------------~------------------- 123 (376)
T 4a69_A 123 ------------------------------------------------------------C------------------- 123 (376)
T ss_dssp ------------------------------------------------------------C-------------------
T ss_pred ------------------------------------------------------------c-------------------
Confidence 0
Q ss_pred ccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccccC
Q psy16742 259 QHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFT 338 (620)
Q Consensus 259 ~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 338 (620)
..++|+.|++|||.+ +.+
T Consensus 124 ----------------------------------------------------------~~A~~~~gG~HHA~~----~~a 141 (376)
T 4a69_A 124 ----------------------------------------------------------DIAINWAGGLHHAKK----FEA 141 (376)
T ss_dssp ----------------------------------------------------------SEEEETTCCCTTCBT----TBC
T ss_pred ----------------------------------------------------------ceeeeCCCCCCcCCc----CCC
Confidence 012455666688877 999
Q ss_pred CCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccC
Q psy16742 339 GPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYD 418 (620)
Q Consensus 339 ~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~ 418 (620)
+|||+| ||+| |||++++ + ..+||+||| |||||
T Consensus 142 ~GFC~~-----------------------NdvA------iAa~~l~---------------~--~~~RV~ivD--~DvHH 173 (376)
T 4a69_A 142 SGFCYV-----------------------NDIV------IGILELL---------------K--YHPRVLYID--IDIHH 173 (376)
T ss_dssp BTTBSS-----------------------CHHH------HHHHHHT---------------T--TCSCEEEEE--CSSSC
T ss_pred Ccchhh-----------------------hHHH------HHHHHHH---------------H--hCCcEEEEe--ccCCC
Confidence 999999 9999 9999993 2 247999999 99999
Q ss_pred hhHHHHHHhhCCCceeeccccCC--CCCCccc----------cCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhc
Q psy16742 419 GDGTAFIFDKDPAVFTFSMHCGR--NYPFRKQ----------CSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNN 486 (620)
Q Consensus 419 gng~~~if~~~p~v~t~S~H~~~--~yP~~~~----------~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~ 486 (620)
|||||++|+++|+|+|+|+|+.+ .||+++. ..+.|+||++|+.++.|+.+ +.... ..+.+.|+
T Consensus 174 GnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~-~~~~l--~p~~~~f~-- 248 (376)
T 4a69_A 174 GDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHL-FQPVI--NQVVDFYQ-- 248 (376)
T ss_dssp CHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHH-HHHHH--HHHHHHHC--
T ss_pred CcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHH-HHHHH--HHHHHHhC--
Confidence 99999999999999999999976 5898653 25689999999999999999 54333 55567776
Q ss_pred chhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCC
Q psy16742 487 GIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPG 566 (620)
Q Consensus 487 ~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g 566 (620)
|+ ++||++++|...+ |+++.|+||.+|
T Consensus 249 -----------------------Pd--------------------------~IvvsaG~Da~~~----DpLg~l~Lt~~g 275 (376)
T 4a69_A 249 -----------------------PT--------------------------CIVLQCGADSLGC----DRLGCFNLSIRG 275 (376)
T ss_dssp -----------------------CS--------------------------EEEEECCGGGBTT----CSSCCCBBCHHH
T ss_pred -----------------------CC--------------------------EEEEeCcccCCCC----CcccCeecCHHH
Confidence 89 9999998888888 999999999999
Q ss_pred ccccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHHHHHHH
Q psy16742 567 LYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHR 609 (620)
Q Consensus 567 ~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~ 609 (620)
+..++ +..+++++|++.++||||+. +.++..+.....
T Consensus 276 ~~~~~----~~l~~~~~p~v~v~eGGY~~--~~var~w~~~~a 312 (376)
T 4a69_A 276 HGECV----EYVKSFNIPLLVLGGGGYTV--RNVARCWTYETS 312 (376)
T ss_dssp HHHHH----HHHHTTCCCEEEECCCCCSH--HHHHHHHHHHHH
T ss_pred HHHHH----HHHHHcCCCEEEEECCCCCh--hHHHHHHHHHHH
Confidence 87765 44566799999999999986 455555544443
No 7
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=8.4e-45 Score=386.05 Aligned_cols=287 Identities=16% Similarity=0.192 Sum_probs=232.7
Q ss_pred cccEEeCccccc-cCCCCCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCCCh-----
Q psy16742 30 HLPIIHTNKYEC-TLPPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTE----- 103 (620)
Q Consensus 30 ~~~ivy~p~y~~-~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~~~----- 103 (620)
++.++|||+|.. .++++|||+|+|+++++++|+++|+++ ++++++|++||.++|++|||++||+.|++.....
T Consensus 4 ~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~-~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 82 (367)
T 3max_A 4 KVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYR-KMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYS 82 (367)
T ss_dssp CEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGG-GSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGGCH
T ss_pred eEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcc-cCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccchhh
Confidence 477999999998 889999999999999999999999998 8999999999999999999999999998765322
Q ss_pred hhhhhc----CcccCHHhHHHHHhccCchhHHHhhc-CCCcCCCCccccchhhhhHHHHHHHHHHHhCCCCeEEEEeeee
Q psy16742 104 KEQKVT----GFEWSAGLASRVRTDPVPTHVIAVYL-PFFLQRRPVFFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAV 178 (620)
Q Consensus 104 ~~~~~~----g~~~s~~s~e~A~lAaGgti~Aa~~~-~Gg~~GHHA~~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~H 178 (620)
+..++. ++|+++++++++++++||+|.||+.+ .|.
T Consensus 83 ~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~---------------------------------------- 122 (367)
T 3max_A 83 KQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQ---------------------------------------- 122 (367)
T ss_dssp HHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTS----------------------------------------
T ss_pred hHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccC----------------------------------------
Confidence 122233 35899999999999999999875321 111
Q ss_pred eCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCCccc
Q psy16742 179 LADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGVDPH 258 (620)
Q Consensus 179 hGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~ 258 (620)
.+
T Consensus 123 ------------------------------------------------------------~~------------------ 124 (367)
T 3max_A 123 ------------------------------------------------------------TD------------------ 124 (367)
T ss_dssp ------------------------------------------------------------CS------------------
T ss_pred ------------------------------------------------------------cc------------------
Confidence 01
Q ss_pred ccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhhHHHHHHHHHhhhhccccCCCCCCCCCccccccC
Q psy16742 259 QHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSARSPPERVFQFT 338 (620)
Q Consensus 259 ~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 338 (620)
+++++.|+.|||.+ +.+
T Consensus 125 -----------------------------------------------------------~Ai~~pgG~HHA~~----~~a 141 (367)
T 3max_A 125 -----------------------------------------------------------MAVNWAGGLHHAKK----SEA 141 (367)
T ss_dssp -----------------------------------------------------------EEEETTCCCTTCBT----TBC
T ss_pred -----------------------------------------------------------eEecCCCCCCcCCc----CCC
Confidence 12344444488877 999
Q ss_pred CCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccC
Q psy16742 339 GPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYD 418 (620)
Q Consensus 339 ~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~ 418 (620)
+|||+| ||+| |||+.++ + ..+||+||| |||||
T Consensus 142 ~GFC~~-----------------------Ndva------iAa~~l~---------------~--~~~RV~ivD--~DvHH 173 (367)
T 3max_A 142 SGFCYV-----------------------NDIV------LAILELL---------------K--YHQRVLYID--IDIHH 173 (367)
T ss_dssp BTTBCS-----------------------CHHH------HHHHHHT---------------T--TCSCEEEEE--CSSSC
T ss_pred CCchhh-----------------------hHHH------HHHHHHH---------------H--cCCcEEEEe--cCCCC
Confidence 999999 9999 9999983 2 247999999 99999
Q ss_pred hhHHHHHHhhCCCceeeccccCC-CCCCcccc----------CCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcc
Q psy16742 419 GDGTAFIFDKDPAVFTFSMHCGR-NYPFRKQC----------SDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNG 487 (620)
Q Consensus 419 gng~~~if~~~p~v~t~S~H~~~-~yP~~~~~----------~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~ 487 (620)
|||||++|+.+|+|+|+|+|+.+ +||.++.. .+.|+||++|+.++.|+.+ +.... ..+...|+
T Consensus 174 GnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~-~~~~~--~~~~~~f~--- 247 (367)
T 3max_A 174 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQI-FKPII--SKVMEMYQ--- 247 (367)
T ss_dssp CHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHH-HHHHH--HHHHHHHC---
T ss_pred CchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHH-HHHHH--HHHHHHhC---
Confidence 99999999999999999999975 68987543 3479999999999999998 54333 45556776
Q ss_pred hhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCc
Q psy16742 488 IFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGL 567 (620)
Q Consensus 488 ~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~ 567 (620)
|+ ++||++++|...+ |+++.|+||..|+
T Consensus 248 ----------------------Pd--------------------------~ivvsaG~D~~~~----Dplg~~~lt~~g~ 275 (367)
T 3max_A 248 ----------------------PS--------------------------AVVLQCGADSLSG----DRLGCFNLTVKGH 275 (367)
T ss_dssp ----------------------CS--------------------------EEEEECCGGGBTT----CSSCCCCBCHHHH
T ss_pred ----------------------CC--------------------------EEEEECCccCcCC----CCCCCeeeCHHHH
Confidence 89 9999998888888 9999999999998
Q ss_pred cccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHHHHHHHH
Q psy16742 568 YMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610 (620)
Q Consensus 568 ~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~ 610 (620)
.... +..+++++|++.++||||+. ..++..+....-+
T Consensus 276 ~~~~----~~~~~~~~p~v~~~eGGY~~--~~var~wt~~ta~ 312 (367)
T 3max_A 276 AKCV----EVVKTFNLPLLMLGGGGYTI--RNVARCWTYETAV 312 (367)
T ss_dssp HHHH----HHHHTTCCCEEEECCCCCSH--HHHHHHHHHHHHH
T ss_pred HHHH----HHHHhcCCCEEEEeCCCCCh--hHHHHHHHHHHHH
Confidence 7654 45566799999999999986 5566555444433
No 8
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=3.3e-45 Score=385.75 Aligned_cols=232 Identities=13% Similarity=0.068 Sum_probs=186.2
Q ss_pred ccEEeCccccccCC-C--------CCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHhcCCC
Q psy16742 31 LPIIHTNKYECTLP-P--------NHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKT 101 (620)
Q Consensus 31 ~~ivy~p~y~~~~~-~--------~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~~~~~ 101 (620)
|++||||+|..+.+ . .|||+|+|+++|++.|+++|+. ++++|++||.|+|++|||++||+.|++...
T Consensus 1 m~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~----~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~ 76 (341)
T 3q9b_A 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD----DVVAPARHGLETVLKVHDAGYLNFLETAWD 76 (341)
T ss_dssp CEEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC----CEECCCCCCSTTGGGTSCHHHHHHHHHHHH
T ss_pred CEEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC----ceeCCCCCCHHHHHHhCCHHHHHHHHHhhh
Confidence 56899999998433 2 5999999999999999999975 378999999999999999999999975310
Q ss_pred ----------------C---------h---hhhh----hcCcccCHHhHHHHHhccCchhHHHh-hcCCC--------cC
Q psy16742 102 ----------------T---------E---KEQK----VTGFEWSAGLASRVRTDPVPTHVIAV-YLPFF--------LQ 140 (620)
Q Consensus 102 ----------------~---------~---~~~~----~~g~~~s~~s~e~A~lAaGgti~Aa~-~~~Gg--------~~ 140 (620)
+ . .... ..++++++++|++|++++||+|.||+ ++.|. -|
T Consensus 77 ~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rpp 156 (341)
T 3q9b_A 77 RWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPP 156 (341)
T ss_dssp HHHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSC
T ss_pred hhhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCC
Confidence 0 0 0011 11458899999999999999999997 45442 16
Q ss_pred CCCccccchh---hhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCC---------------ccee----c-----------
Q psy16742 141 RRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADL---------------IHFM----V----------- 187 (620)
Q Consensus 141 GHHA~~d~a~---ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGng---------------ih~~----~----------- 187 (620)
||||.+++++ +|||+||||+++++.+.+||+|||||+||||| +|+. |
T Consensus 157 GHHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G 236 (341)
T 3q9b_A 157 GHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETG 236 (341)
T ss_dssp CTTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCC
T ss_pred CCCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccC
Confidence 9999999998 99999999999888889999999999999998 6654 1
Q ss_pred -----CC--cc-----CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCCCcccCHHHHHhhccccccccCCC
Q psy16742 188 -----GI--NT-----QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSARISSEAGV 255 (620)
Q Consensus 188 -----G~--n~-----~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG~l~LT~~g~~~~~~~~~~~~agg 255 (620)
|+ |+ ++|++|+.+|+++| |.+++|+||+||||||||+|++||||+|+||++||+++ .+++..++ +
T Consensus 237 ~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~-~~~l~~~~-~ 313 (341)
T 3q9b_A 237 KGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITM-GRTIAASG-V 313 (341)
T ss_dssp CGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHH-HHHHHTTS-S
T ss_pred CCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHH-HHHHHHhC-C
Confidence 12 22 58999999999875 67899999999999999999999999999999999998 44444443 2
Q ss_pred ccccccccccccccc
Q psy16742 256 DPHQHDELGKLNLTD 270 (620)
Q Consensus 256 ~~~~~~~~g~~~~~~ 270 (620)
.. .....|+|++..
T Consensus 314 ~~-v~vleGGY~~~~ 327 (341)
T 3q9b_A 314 PL-LVVMEGGYGVPE 327 (341)
T ss_dssp CE-EEEECCCCCCTT
T ss_pred CE-EEEECCCCChHH
Confidence 22 222225565543
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.8e-43 Score=374.69 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=224.2
Q ss_pred CCccccEEeCcccccc-CCC--------CCCCCchHHHHHHHHHHhcCCCCcCceeecCCCCCHHHHHhcCCHHHHHHHh
Q psy16742 27 RLVHLPIIHTNKYECT-LPP--------NHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFF 97 (620)
Q Consensus 27 ~~m~~~ivy~p~y~~~-~~~--------~HPe~p~R~~~i~~~L~~~gl~~~~~~~~~P~~At~eeL~~vHs~~YI~~l~ 97 (620)
..|.|++||||+|..+ ++. .|||+|+|+++|++.|+++|+ ++++|++||.|+|++|||++||+.|+
T Consensus 18 ~~~~M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl-----~~~~p~~At~e~L~~vHs~~YI~~l~ 92 (362)
T 3men_A 18 GPGSMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF-----PVREPDDFGIAPIAAVHDTHYLRFLE 92 (362)
T ss_dssp ---CCEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC-----CEECCCCCCSHHHHTTSCHHHHHHHH
T ss_pred CCCceEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC-----eEeCCCCCCHHHHHHhCCHHHHHHHH
Confidence 4455789999999984 443 699999999999999999986 37899999999999999999999996
Q ss_pred cCC-----CC-h----------------------h-hh--hhcCcccCHHhHHHHHhccCchhHHHhhc-CCCcCCCCcc
Q psy16742 98 NGK-----TT-E----------------------K-EQ--KVTGFEWSAGLASRVRTDPVPTHVIAVYL-PFFLQRRPVF 145 (620)
Q Consensus 98 ~~~-----~~-~----------------------~-~~--~~~g~~~s~~s~e~A~lAaGgti~Aa~~~-~Gg~~GHHA~ 145 (620)
+.. .+ . + .. ...++++++++|++|++++|++|.||+.+ .|.
T Consensus 93 ~~~~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~------- 165 (362)
T 3men_A 93 TVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGA------- 165 (362)
T ss_dssp HHHHHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HhhhhhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-------
Confidence 531 00 0 0 00 01245889999999999999999885422 111
Q ss_pred ccchhhhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCCcceecCCccCChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCc
Q psy16742 146 FDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMVGINTQPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDP 225 (620)
Q Consensus 146 ~d~a~ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGngih~~~G~n~~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa 225 (620)
T Consensus 166 -------------------------------------------------------------------------------- 165 (362)
T 3men_A 166 -------------------------------------------------------------------------------- 165 (362)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCcccCHHHHHhhccccccccCCCcccccccccccccccccchhhccCCCCCCCchhhhhhhhhhcccCchhhh
Q psy16742 226 HQHDELGKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLTDHGVKYILNDRTDPVPTHVIAVYLTFFLQRRPVFFD 305 (620)
Q Consensus 226 ~~~DpLG~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (620)
. .++
T Consensus 166 -------------------------------~-----------------------------~af---------------- 169 (362)
T 3men_A 166 -------------------------------P-----------------------------AAY---------------- 169 (362)
T ss_dssp -------------------------------S-----------------------------EEE----------------
T ss_pred -------------------------------C-----------------------------ceE----------------
Confidence 0 233
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhh
Q psy16742 306 IAAVLADLIHFMVGINTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTR 385 (620)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~ 385 (620)
|.+|||||||.+ +.++|||+| ||+| |||++++
T Consensus 170 --------------al~rPpGHHA~~----~~a~GFC~f-----------------------NnvA------iAa~~l~- 201 (362)
T 3men_A 170 --------------ALCRPPGHHARV----DAAGGFCYL-----------------------NNAA------IAAQALR- 201 (362)
T ss_dssp --------------ECCSSCCTTCBT----TBBBTTBSS-----------------------CHHH------HHHHHHT-
T ss_pred --------------EeCCCCCCCCCC----CCCCCcccc-----------------------CHHH------HHHHHHH-
Confidence 456899999988 999999999 9999 9999993
Q ss_pred hccCCCCCCCCCccCCCCcceeEEEecccCccChhHHHHHHhhCCCceeeccccC--CCCCC-cc----------ccCCC
Q psy16742 386 DRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCG--RNYPF-RK----------QCSDL 452 (620)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~--~~yP~-~~----------~~~d~ 452 (620)
+. .+||+||| ||||||||||.+|+++|+|+|+|+|+. .+||+ ++ ...++
T Consensus 202 --------------~~--~~RV~ivD--~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~v 263 (362)
T 3men_A 202 --------------AR--HARVAVLD--TDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNV 263 (362)
T ss_dssp --------------TT--CSCEEEEE--CSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGGGTTSEE
T ss_pred --------------Hc--CCeEEEEe--CcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCCCCCceeE
Confidence 22 58999999 999999999999999999999999996 48997 32 13578
Q ss_pred CccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHc
Q psy16742 453 DVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRH 532 (620)
Q Consensus 453 D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~ 532 (620)
|+||++|+.++.|+.+ +... +. ..++|+ |+
T Consensus 264 NvPL~~g~~d~~yl~~-~~~~--l~-~l~~f~-------------------------Pd--------------------- 293 (362)
T 3men_A 264 NLPMPHGSSEAAFFER-VDDA--LR-ELRRFA-------------------------PD--------------------- 293 (362)
T ss_dssp EEEECTTBCHHHHHHH-HHHH--HH-HHHHHC-------------------------CS---------------------
T ss_pred eeccCCCCChHHHHHH-HHHH--HH-HHHhcC-------------------------CC---------------------
Confidence 9999999999999999 5432 33 346666 89
Q ss_pred CCccEEEEEEecccCCCCCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChh-hHHHHHHHHHH
Q psy16742 533 GIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCA-DIDQLAQRQTI 606 (620)
Q Consensus 533 ~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~-~~~~lv~~h~~ 606 (620)
++||++++|...+ |+++.|+||.++|...+ +..+++++|++.++||||+. .+..-+..|..
T Consensus 294 -----lIvvsaG~Da~~~----Dplg~l~lt~~~~~~~~----~~l~~~~~~~v~vleGGY~~~~l~~~~~a~l~ 355 (362)
T 3men_A 294 -----ALVLSLGFDVYRD----DPQSQVAVTTDGFGRLG----HLIGALRLPTVIVQEGGYHIESLEANARSFFG 355 (362)
T ss_dssp -----EEEEEECSTTBTT----CTTCCBCBCHHHHHHHH----HHHHTTCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_pred -----EEEEECcccCcCC----CCCCCccCCHHHHHHHH----HHHHhhCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999998888888 99999999999987654 45566789999999999986 34555544444
No 10
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=99.96 E-value=3.1e-30 Score=275.41 Aligned_cols=174 Identities=15% Similarity=0.125 Sum_probs=142.3
Q ss_pred ecccCccChhHHHHHHhhCC-CceeeccccCCCCCCccccCCC-CccccCCchHHHHhhcchhhhhhhhHHHHHHhhcch
Q psy16742 411 EIGLPCYDGDGTAFIFDKDP-AVFTFSMHCGRNYPFRKQCSDL-DVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGI 488 (620)
Q Consensus 411 D~~ldvH~gng~~~if~~~p-~v~t~S~H~~~~yP~~~~~~d~-D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~ 488 (620)
+.++.||+.+|++++....+ .. ....+. |||+++++++++.+++|+++.+++.++.++.++ +
T Consensus 70 ~~l~~vH~~~Yv~~l~~~~~~~~--------------~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~--a 133 (369)
T 1zz1_A 70 ADILRAHSAAHLENMKRVSNLPT--------------GGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSA--G 133 (369)
T ss_dssp HHHHTTSCHHHHHHHHHHHHSTT--------------CEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSE--E
T ss_pred HHHHHhccHHHHHHHHHhCcccc--------------ceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcc--e
Confidence 34479999999999987543 11 112456 999999999999999999999988777665442 3
Q ss_pred hhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCC--CCCCCCCCeEEeecC-
Q psy16742 489 FLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTR--SIPVPSLTVLSSCVP- 565 (620)
Q Consensus 489 ~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG--~if~D~~~vl~lS~~- 565 (620)
| +++|||||||++++++|||+|||+|||+++|+++++.+||+||||||||||| ++|++++++|++|+|
T Consensus 134 f---------a~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~ 204 (369)
T 1zz1_A 134 Y---------ALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQ 204 (369)
T ss_dssp E---------ECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEE
T ss_pred E---------EEecCCccCcCCCCCCCchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccC
Confidence 4 4889999999999999999999999999999999999999999999999999 699999999999987
Q ss_pred -Cccc-cchhHHHH------HHhcCCCeeecCCCCChhhHHHHHHHHHHHHHHHHHH
Q psy16742 566 -GLYM-RDYYVLDT------AISAGIPVATVTGGGYCADIDQLAQRQTIIHRAATHV 614 (620)
Q Consensus 566 -g~~~-~~~~v~~~------~~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~a~~~ 614 (620)
++|| .++...+. +..+|||++.+++ +-+.+..+..++.|++.+|
T Consensus 205 ~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~-----d~~yl~~~~~~v~p~l~~f 256 (369)
T 1zz1_A 205 HLCFPPDSGYSTERGAGNGHGYNINVPLPPGSG-----NAAYLHAMDQVVLPALRAY 256 (369)
T ss_dssp TTSSSTTCCCTTCCCCGGGTTCEEEEEECTTCB-----HHHHHHHHHHTHHHHHHHH
T ss_pred CCCCCCCCCcccccCCCCCCceEEeeecCCCCC-----HHHHHHHHHHHHHHHHHHc
Confidence 4789 88776533 3467888887664 4456666777788887776
No 11
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=99.95 E-value=4.1e-29 Score=266.80 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=123.5
Q ss_pred HhHHHHHhccCchhHHHhhcCCCcCCCCccccchh---hhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCC----------
Q psy16742 116 GLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADL---------- 182 (620)
Q Consensus 116 ~s~e~A~lAaGgti~Aa~~~~Gg~~GHHA~~d~a~---ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGng---------- 182 (620)
++..++.....|...-|.++.|| ||||.+++++ +|||+||||+++++.. +||+|||||+|||||
T Consensus 110 gtl~Aa~~v~~g~~~~A~~~~gG--~HHA~~~~a~GFC~~NdvAiAa~~l~~~~-~RV~ivD~DvHHGnGtq~iF~~d~~ 186 (376)
T 4a69_A 110 ASLQGATQLNNKICDIAINWAGG--LHHAKKFEASGFCYVNDIVIGILELLKYH-PRVLYIDIDIHHGDGVQEAFYLTDR 186 (376)
T ss_dssp HHHHHHHHHHTTSCSEEEETTCC--CTTCBTTBCBTTBSSCHHHHHHHHHTTTC-SCEEEEECSSSCCHHHHHHTTTCSS
T ss_pred HHHHHHHHHHcCCcceeeeCCCC--CCcCCcCCCCcchhhhHHHHHHHHHHHhC-CcEEEEeccCCCCcchhhHhcCCCC
Confidence 45566665444444445677776 8999999998 9999999999977664 999999999999998
Q ss_pred -----ccee----c---------------CC--cc-----CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCC
Q psy16742 183 -----IHFM----V---------------GI--NT-----QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDEL 231 (620)
Q Consensus 183 -----ih~~----~---------------G~--n~-----~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpL 231 (620)
+|+. + |+ |+ ++|++|+.+|+++|.|++++|+||+||||||||+|++|||
T Consensus 187 Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpL 266 (376)
T 4a69_A 187 VMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRL 266 (376)
T ss_dssp EEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSS
T ss_pred EEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcc
Confidence 5553 1 12 22 5899999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHhhccccccccCCCcccccccccccccc--cccc----hhhccC-CCCCCCch
Q psy16742 232 GKLNLTDHGECISSSARISSEAGVDPHQHDELGKLNLT--DHGV----KYILND-RTDPVPTH 287 (620)
Q Consensus 232 G~l~LT~~g~~~~~~~~~~~~agg~~~~~~~~g~~~~~--~~~~----~~~l~~-~~~~~~~~ 287 (620)
|+|+||++||+++. +.+..+ |+.. ...-.|+|++. +.|+ +.+++. .++.+|.+
T Consensus 267 g~l~Lt~~g~~~~~-~~l~~~-~~p~-v~v~eGGY~~~~var~w~~~~a~l~g~~~~~~~P~~ 326 (376)
T 4a69_A 267 GCFNLSIRGHGECV-EYVKSF-NIPL-LVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYS 326 (376)
T ss_dssp CCCBBCHHHHHHHH-HHHHTT-CCCE-EEECCCCCSHHHHHHHHHHHHHHHTTCCCCSBCCCC
T ss_pred cCeecCHHHHHHHH-HHHHHc-CCCE-EEEECCCCChhHHHHHHHHHHHHhcCCCccCCCCCc
Confidence 99999999999983 333333 3322 22233555554 3333 345555 44556665
No 12
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=99.95 E-value=2.1e-28 Score=261.78 Aligned_cols=197 Identities=20% Similarity=0.216 Sum_probs=157.8
Q ss_pred CchhhhHHHHHHHHHhhhhccccCCCC--CCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhh
Q psy16742 300 RPVFFDIAAVLADLIHFMVGINTQPVS--ARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKL 377 (620)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~ 377 (620)
.+..-.++++.+..+-...+++.+|+| |||.+ +.++|||+| ||+|
T Consensus 102 ~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~----~~a~GFC~f-----------------------NnvA------ 148 (375)
T 1c3p_A 102 GSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFK----SRANGFCYI-----------------------NNPA------ 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBT----TBCBTTBSS-----------------------CHHH------
T ss_pred HHHHHhhHHHHHHHHHHcCCceeecCcccceeee----ccCCCceee-----------------------cHHH------
Confidence 344445666666655555557778888 99988 999999999 9999
Q ss_pred hhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccChhHHHHHHhhCCCceeeccccCCC--CCCccc-------
Q psy16742 378 VSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRN--YPFRKQ------- 448 (620)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~~~--yP~~~~------- 448 (620)
|||++++ +. ..+||+||| ||||||||||.+|+++|+|+|+|+|+.++ ||+++.
T Consensus 149 iAa~~l~---------------~~-g~~RV~IvD--~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~ 210 (375)
T 1c3p_A 149 VGIEYLR---------------KK-GFKRILYID--LDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGE 210 (375)
T ss_dssp HHHHHHH---------------HT-TCCCEEEEE--CSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCC
T ss_pred HHHHHHH---------------Hh-CCCeEEEEe--cCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCc
Confidence 9999984 22 347999999 99999999999999999999999999865 498651
Q ss_pred ----cCCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHH
Q psy16742 449 ----CSDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524 (620)
Q Consensus 449 ----~~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvai 524 (620)
..+.|+||++|+.++.|+.+ +.... ..+.++|+ |+
T Consensus 211 g~g~g~~vNvPL~~g~~D~~yl~a-~~~~l--~p~l~~F~-------------------------Pd------------- 249 (375)
T 1c3p_A 211 GKGKGYNLNIPLPKGLNDNEFLFA-LEKSL--EIVKEVFE-------------------------PE------------- 249 (375)
T ss_dssp GGGTTSEEEEEECTTCCHHHHHHH-HHHHH--HHHHHHCC-------------------------CS-------------
T ss_pred CCCCceEEEEeCCCCCCHHHHHHH-HHHHH--HHHHHHhC-------------------------CC-------------
Confidence 35689999999999999998 54333 44556666 89
Q ss_pred HHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHH
Q psy16742 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQ 604 (620)
Q Consensus 525 a~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h 604 (620)
++||++++|...+ |+++.|++|.++|..++..+.+. +.|++.++||||+. +.++..+
T Consensus 250 -------------lIvvsaG~Da~~~----DpLg~l~lt~~g~~~~~~~l~~~----a~~vv~vleGGY~~--~~l~~~~ 306 (375)
T 1c3p_A 250 -------------VYLLQLGTDPLLE----DYLSKFNLSNVAFLKAFNIVREV----FGEGVYLGGGGYHP--YALARAW 306 (375)
T ss_dssp -------------EEEEECCSTTBTT----CTTCSCCBCHHHHHHHHHHHHHH----HCSCEEECCCCCCH--HHHHHHH
T ss_pred -------------EEEEECCccccCC----CCCCCcccCHHHHHHHHHHHHHh----ccceEEEECCCCCh--HHHHHHH
Confidence 9999998888888 99999999999998887766655 46799999999965 5666666
Q ss_pred HHHHHHH
Q psy16742 605 TIIHRAA 611 (620)
Q Consensus 605 ~~~~~~a 611 (620)
..++.++
T Consensus 307 ~~~~~~l 313 (375)
T 1c3p_A 307 TLIWCEL 313 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 13
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=99.95 E-value=3.1e-29 Score=265.80 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=126.4
Q ss_pred cccCccChhHHHHHHhhCC-----------CceeeccccC-CCCCCc------cccCCCCccccCCchHHHHhhcchhhh
Q psy16742 412 IGLPCYDGDGTAFIFDKDP-----------AVFTFSMHCG-RNYPFR------KQCSDLDVAIDVGTDDAGNRTVALTWV 473 (620)
Q Consensus 412 ~~ldvH~gng~~~if~~~p-----------~v~t~S~H~~-~~yP~~------~~~~d~D~pl~~gt~~aa~la~G~~~~ 473 (620)
.++.||+.+|++++....+ +++. +++.. ...|-. ....|.|||++++|++++.+++|+++.
T Consensus 78 ~L~~vHs~~YI~~l~~~~~~~~~~~~~~~~e~~p-~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~ 156 (362)
T 3men_A 78 PIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMS-NIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALA 156 (362)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHTSCGGGCSSBCC-CBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhhhhhhhccccccccccc-ccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHH
Confidence 3479999999999876421 1110 00100 011110 124678999999999999999999999
Q ss_pred hhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEecccCCCC--C
Q psy16742 474 TFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQHTR--S 551 (620)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH~GdG--~ 551 (620)
+++.++.++ ++ +| +++|||||||++++++|||+|||+|||+++|+++ .+||+|||||+||||| .
T Consensus 157 aa~~v~~g~-~~--af---------al~rPpGHHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~ 222 (362)
T 3men_A 157 AAAAVRDGA-PA--AY---------ALCRPPGHHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQE 222 (362)
T ss_dssp HHHHHHTTC-SE--EE---------ECCSSCCTTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHH
T ss_pred HHHHHHcCC-Cc--eE---------EeCCCCCCCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhH
Confidence 988777654 32 34 4889999999999999999999999999999998 4889999999999999 7
Q ss_pred CCCCCCCeEEeecCC----cccc-chhHHHH------HHhcCCCeeecCC
Q psy16742 552 IPVPSLTVLSSCVPG----LYMR-DYYVLDT------AISAGIPVATVTG 590 (620)
Q Consensus 552 if~D~~~vl~lS~~g----~~~~-~~~v~~~------~~~~niPl~~~~g 590 (620)
+|++++++|++|+|+ +||. ++...+. +.++|||++.+++
T Consensus 223 iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~ 272 (362)
T 3men_A 223 IFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSS 272 (362)
T ss_dssp HTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGGGTTSEEEEEECTTBC
T ss_pred HhcCCCCEEEEEecCCCccCCCCCCCccccccCCCCCceeEeeccCCCCC
Confidence 999999999999985 6887 6655543 3467888887665
No 14
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=99.94 E-value=1.3e-27 Score=252.06 Aligned_cols=173 Identities=20% Similarity=0.305 Sum_probs=143.2
Q ss_pred cccCCCCCCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCcc
Q psy16742 320 INTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTS 399 (620)
Q Consensus 320 ~~~~p~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (620)
|.+|||||||.+ +.++|||+| ||+| |||++++
T Consensus 151 al~rppGHHA~~----~~a~GFC~~-----------------------Nnva------iAa~~l~--------------- 182 (341)
T 3q9b_A 151 SLCRPPGHHAGI----DMFGGYCFI-----------------------NNAA------VAAQRLL--------------- 182 (341)
T ss_dssp ECCSSCCTTCBT----TBBBTTBSS-----------------------CHHH------HHHHHHH---------------
T ss_pred ecCCCCCCCCCC----CCCCCcccc-----------------------CHHH------HHHHHHH---------------
Confidence 445888899988 999999999 9999 9999994
Q ss_pred CCCCcceeEEEecccCccChhHHHHHHhhCCCceeeccccC--CCCCC-cc----------ccCCCCccccCCchHHHHh
Q psy16742 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCG--RNYPF-RK----------QCSDLDVAIDVGTDDAGNR 466 (620)
Q Consensus 400 ~~~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~--~~yP~-~~----------~~~d~D~pl~~gt~~aa~l 466 (620)
+. ..+||+||| ||||||||||.+|+++|+|+|+|+|+. .+||+ ++ ...+.|+||++|+.++.|+
T Consensus 183 ~~-g~~RV~ivD--~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~ 259 (341)
T 3q9b_A 183 DK-GAKKIAILD--VDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWG 259 (341)
T ss_dssp HT-TCSCEEEEE--CSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHH
T ss_pred Hc-CCCeEEEEe--cCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCCCCCceeEeeecCCCCChHHHH
Confidence 22 378999999 999999999999999999999999997 48997 32 2356899999999999999
Q ss_pred hcchhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEEeccc
Q psy16742 467 TVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVH 546 (620)
Q Consensus 467 a~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD~DvH 546 (620)
.+ +... +. ...+|+ |+ ++||++++|
T Consensus 260 ~~-~~~~--l~-~l~~f~-------------------------Pd--------------------------~ivvsaG~D 284 (341)
T 3q9b_A 260 EA-LTDS--LK-RIAAFG-------------------------AE--------------------------AIVVSLGVD 284 (341)
T ss_dssp HH-HHHH--HH-HHHHHT-------------------------CS--------------------------CEEEEECCT
T ss_pred HH-HHHH--HH-HHHhhC-------------------------CC--------------------------EEEEeCCcc
Confidence 99 5432 33 346666 89 999998888
Q ss_pred CCCCCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChh-hHHHHHHHHHH
Q psy16742 547 QHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCA-DIDQLAQRQTI 606 (620)
Q Consensus 547 ~GdG~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~-~~~~lv~~h~~ 606 (620)
...+ |+++.|+||..+|.+.+ +..+++++|++.++||||+. .+..-+..|..
T Consensus 285 ~~~~----Dplg~~~lt~~~~~~~~----~~l~~~~~~~v~vleGGY~~~~l~~~~~~~l~ 337 (341)
T 3q9b_A 285 TFEQ----DPISFFKLTSPDYITMG----RTIAASGVPLLVVMEGGYGVPEIGLNVANVLK 337 (341)
T ss_dssp TBTT----CTTCCCBBCTTHHHHHH----HHHHTTSSCEEEEECCCCCCTTHHHHHHHHHH
T ss_pred ccCC----CCCCCccCCHHHHHHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHHHHH
Confidence 8888 99999999999987655 44556789999999999986 35565555544
No 15
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=99.94 E-value=1.1e-27 Score=256.09 Aligned_cols=196 Identities=19% Similarity=0.221 Sum_probs=154.8
Q ss_pred chhhhHHHHHHHHHhh----hhccccCCCCCCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhh
Q psy16742 301 PVFFDIAAVLADLIHF----MVGINTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLK 376 (620)
Q Consensus 301 ~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~ 376 (620)
+..-.++++.+...-. .+++++.|+.|||.+ +.++|||+| ||+|
T Consensus 112 a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~----~~a~GFC~~-----------------------Ndia----- 159 (388)
T 3ew8_A 112 AAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKK----DEASGFCYL-----------------------NDAV----- 159 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBT----TBCBTTBSS-----------------------CHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCCceeeecCCcccceee----cCCCCchhh-----------------------hHHH-----
Confidence 3444455555554332 234554444499988 999999999 9999
Q ss_pred hhhHHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccChhHHHHHHhhCCCceeeccccC--CCCCCcccc-----
Q psy16742 377 LVSISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCG--RNYPFRKQC----- 449 (620)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~--~~yP~~~~~----- 449 (620)
|||+.++ ++.+||+||| ||||||||||++|+.+|+|+|+|+|+. .+||+++..
T Consensus 160 -iAa~~l~-----------------~~~~RV~ivD--~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~ 219 (388)
T 3ew8_A 160 -LGILRLR-----------------RKFERILYVD--LDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGL 219 (388)
T ss_dssp -HHHHHHT-----------------TTCSCEEEEE--CSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCC
T ss_pred -HHHHHHH-----------------hcCCeEEEEe--cCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccC
Confidence 9999982 2358999999 999999999999999999999999985 489987543
Q ss_pred -----CCCCccccCCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHH
Q psy16742 450 -----SDLDVAIDVGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524 (620)
Q Consensus 450 -----~d~D~pl~~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvai 524 (620)
.+.|+||++|+.++.|+.+ +.... ..+...|+ |+
T Consensus 220 g~g~g~~vNvPL~~G~~d~~y~~~-~~~~l--~p~~~~F~-------------------------Pd------------- 258 (388)
T 3ew8_A 220 GKGRYYSVNVPIQDGIQDEKYYQI-CESVL--KEVYQAFN-------------------------PK------------- 258 (388)
T ss_dssp GGGTTSEEEEEECTTCCHHHHHHH-HHHHH--HHHHHHHC-------------------------CS-------------
T ss_pred CCCcceeeeccCCCCCCHHHHHHH-HHHHH--HHHHHHhC-------------------------CC-------------
Confidence 2479999999999999999 54333 55556776 89
Q ss_pred HHHHHHHcCCccEEEEEEecccCCCCCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHH
Q psy16742 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQ 604 (620)
Q Consensus 525 a~~~l~~~~~~~rVlIvD~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h 604 (620)
++||++++|...+ ||++.|+||..|+..++..+. ++++|++.++||||+. ..++..+
T Consensus 259 -------------lIvvsaG~Da~~~----DpLg~l~lt~~g~~~~~~~l~----~~~~p~l~~~gGGY~~--~~var~w 315 (388)
T 3ew8_A 259 -------------AVVLQLGADTIAG----DPMCSFNMTPVGIGKCLKYIL----QWQLATLILGGGGYNL--ANTARCW 315 (388)
T ss_dssp -------------EEEEECCSTTBTT----CTTCCCCBCHHHHHHHHHHHH----TTCCEEEEECCCCCSH--HHHHHHH
T ss_pred -------------EEEEECCccCCCC----CCCCCCcCCHHHHHHHHHHHH----hcCCCEEEEECCCCCh--hHHHHHH
Confidence 9999999888888 999999999999887776554 4689999999999976 5567666
Q ss_pred HHHHHHHH
Q psy16742 605 TIIHRAAT 612 (620)
Q Consensus 605 ~~~~~~a~ 612 (620)
..+..++.
T Consensus 316 ~~~~~~l~ 323 (388)
T 3ew8_A 316 TYLTGVIL 323 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66665554
No 16
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=99.94 E-value=9.2e-28 Score=255.33 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=104.5
Q ss_pred HhHHHHHhccCchhHHHhhcCCCcCCCCccccchh---hhhHHHHHHHHHHHhCCCCeEEEEeeeeeCCC----------
Q psy16742 116 GLASRVRTDPVPTHVIAVYLPFFLQRRPVFFDIAA---VLADLICIAVYLTFFLQRRPVFFDIAAVLADL---------- 182 (620)
Q Consensus 116 ~s~e~A~lAaGgti~Aa~~~~Gg~~GHHA~~d~a~---ifNnvAiAa~~l~~~~~~RVlIVD~D~HhGng---------- 182 (620)
++..+|.....+....|.+++|| +|||.+++++ +|||+||||+++++. .+||+|||||+|||||
T Consensus 110 gsl~aa~~v~~~~~~~Ai~~pgG--~HHA~~~~a~GFC~~NdvaiAa~~l~~~-~~RV~ivD~DvHHGnGtq~iF~~d~~ 186 (367)
T 3max_A 110 GSVAGAVKLNRQQTDMAVNWAGG--LHHAKKSEASGFCYVNDIVLAILELLKY-HQRVLYIDIDIHHGDGVEEAFYTTDR 186 (367)
T ss_dssp HHHHHHHHHHTTSCSEEEETTCC--CTTCBTTBCBTTBCSCHHHHHHHHHTTT-CSCEEEEECSSSCCHHHHHHTTTCSS
T ss_pred HHHHHHHHhcccCcceEecCCCC--CCcCCcCCCCCchhhhHHHHHHHHHHHc-CCcEEEEecCCCCCchhhHHhcCCCC
Confidence 45555554433322234466666 6999999998 999999999997765 4999999999999998
Q ss_pred -----ccee---c---------------CC--cc-----CChHHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCCCCC
Q psy16742 183 -----IHFM---V---------------GI--NT-----QPVSGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELG 232 (620)
Q Consensus 183 -----ih~~---~---------------G~--n~-----~gD~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~DpLG 232 (620)
+|+. + |+ |+ ++|++|+.+|+++|+|++++|+||+||||||||+|++||||
T Consensus 187 Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg 266 (367)
T 3max_A 187 VMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLG 266 (367)
T ss_dssp EEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSC
T ss_pred EEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCC
Confidence 5553 1 12 33 58999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHhhc
Q psy16742 233 KLNLTDHGECISS 245 (620)
Q Consensus 233 ~l~LT~~g~~~~~ 245 (620)
+|+||.+||.++.
T Consensus 267 ~~~lt~~g~~~~~ 279 (367)
T 3max_A 267 CFNLTVKGHAKCV 279 (367)
T ss_dssp CCCBCHHHHHHHH
T ss_pred CeeeCHHHHHHHH
Confidence 9999999999883
No 17
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=99.93 E-value=1.2e-26 Score=249.61 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=139.7
Q ss_pred cccCCCCCCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhhHHHhhhhccCCCCCCCCCcc
Q psy16742 320 INTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVSISDTTRDRAQSPHCRPGCTS 399 (620)
Q Consensus 320 ~~~~p~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (620)
|.+|||||||.+ +.++|||+| ||+| |||++++
T Consensus 180 a~~rPpGHHA~~----~~a~GFC~f-----------------------NnvA------iAa~~l~--------------- 211 (421)
T 2pqp_A 180 AVVRPPGHHADH----STAMGFCFF-----------------------NSVA------IACRQLQ--------------- 211 (421)
T ss_dssp ECCSSCCTTCBT----TBCBTTBSS-----------------------CHHH------HHHHHHH---------------
T ss_pred eeCCCCCCCCCC----CCCCcchhh-----------------------CHHH------HHHHHHH---------------
Confidence 455888899987 999999999 9999 9999993
Q ss_pred CCCCcceeEEEecccCccChhHHHHHHhhCCCceeeccccC---CCCCCcccc----------CCCCccccC----CchH
Q psy16742 400 GMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCG---RNYPFRKQC----------SDLDVAIDV----GTDD 462 (620)
Q Consensus 400 ~~~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~---~~yP~~~~~----------~d~D~pl~~----gt~~ 462 (620)
+....+||+||| ||||||||||.+|+++|+|+|+|+|+. ..||+++.. .+.|+|++. |+.+
T Consensus 212 ~~~~~~RV~ivD--~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl~~g~~d 289 (421)
T 2pqp_A 212 QQSKASKILIVD--WDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGD 289 (421)
T ss_dssp HHSTTCCEEEEE--CSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBH
T ss_pred HhcCCCeEEEEe--cCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccceeccccCCCCCCCCCH
Confidence 344678999999 999999999999999999999999985 479987532 347899864 5789
Q ss_pred HHHhhcchhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechHHHHHHHHHHcCCccEEEEEE
Q psy16742 463 AGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVD 542 (620)
Q Consensus 463 aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndvaia~~~l~~~~~~~rVlIvD 542 (620)
+.|+.+ +.... ..+..+|+ |+ ++||+
T Consensus 290 ~~yl~~-~~~~l--~p~~~~F~-------------------------Pd--------------------------lIvvs 315 (421)
T 2pqp_A 290 PEYLAA-FRIVV--MPIAREFS-------------------------PD--------------------------LVLVS 315 (421)
T ss_dssp HHHHHH-HHHTH--HHHHHHHC-------------------------CS--------------------------EEEEE
T ss_pred HHHHHH-HHHHH--HHHHHHhC-------------------------CC--------------------------EEEEe
Confidence 999998 54333 45557776 89 89998
Q ss_pred ecccCCCCCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChhhHHHHHHHHHHHHHH
Q psy16742 543 LDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQLAQRQTIIHRA 610 (620)
Q Consensus 543 ~DvH~GdG~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~lv~~h~~~~~~ 610 (620)
+++|...|+ .|+++.|++|..+|...+..+.+. .+.|++..+||||+. +.|+.....++++
T Consensus 316 aG~Da~~gD--~dpLg~~~lt~~~y~~~~~~l~~~---a~grvv~vlEGGY~l--~~l~~~~~a~~~~ 376 (421)
T 2pqp_A 316 AGFDAAEGH--PAPLGGYHVSAKCFGYMTQQLMNL---AGGAVVLALEGGHDL--TAICDASEACVAA 376 (421)
T ss_dssp ECCTTBTTC--CGGGCCCBBCHHHHHHHHHHHTTS---GGGCEEEEECSCCCH--HHHHHHHHHHHHH
T ss_pred CCccccccc--ccccCCceeCHHHHHHHHHHHHHH---cCCCEEEEECCCCCh--HHHHHHHHHHHHH
Confidence 666665550 048999999988887666555443 278999999999965 5555554444443
No 18
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.93 E-value=4.6e-26 Score=246.61 Aligned_cols=192 Identities=18% Similarity=0.217 Sum_probs=147.2
Q ss_pred HHHHHHHHHhhhhc------cccCCCCCCCCCccccccCCCeEeecCCcchhhHHHHhhhcCCCCCccCCcccchhhhhh
Q psy16742 306 IAAVLADLIHFMVG------INTQPVSARSPPERVFQFTGPICYLQPPQKELNKQILTLIKVPSSMTVNSIEPECLKLVS 379 (620)
Q Consensus 306 ~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~~~~~a 379 (620)
.++++++....+-| |.+|||||||.+ +.++|||+| ||+| ||
T Consensus 131 aG~~l~a~~~v~~g~~~~afa~vrppGHHA~~----~~a~GFC~~-----------------------Nnva------ia 177 (413)
T 2vqm_A 131 VGCVVELVFKVATGELKNGFAVVRPPGHHAEE----STPMGFCYF-----------------------NSVA------VA 177 (413)
T ss_dssp HHHHHHHHHHHHTTSSSEEEECCCSCCTTCBT----TBCBTTBSS-----------------------CHHH------HH
T ss_pred HHHHHHHHHHHhcCCccceeeecccccccCcC----CCCCCcccc-----------------------chHH------HH
Confidence 34444444444444 778999999988 999999999 9999 99
Q ss_pred HHHhhhhccCCCCCCCCCccCCCCcceeEEEecccCccChhHHHHHHhhCCCceeeccccCC---CCCCccc--------
Q psy16742 380 ISDTTRDRAQSPHCRPGCTSGMKSSHRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGR---NYPFRKQ-------- 448 (620)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ilD~~ldvH~gng~~~if~~~p~v~t~S~H~~~---~yP~~~~-------- 448 (620)
|+.++ .....+||+||| ||||||||||.+|+++|+|+|+|+|+.. .||.++.
T Consensus 178 a~~~~---------------~~~~~~RV~ivD--~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~ 240 (413)
T 2vqm_A 178 AKLLQ---------------QRLSVSKILIVD--WDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGP 240 (413)
T ss_dssp HHHHH---------------HHSCCSCEEEEE--CSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGG
T ss_pred HHHHH---------------HhcCCCeEEEEe--cccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCc
Confidence 99983 455678999999 9999999999999999999999999863 4565532
Q ss_pred --cCCCCcccc----CCchHHHHhhcchhhhhhhhHHHHHHhhcchhhhhhccCCCccccCCCCCCCCCCCceeeeechH
Q psy16742 449 --CSDLDVAID----VGTDDAGNRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDM 522 (620)
Q Consensus 449 --~~d~D~pl~----~gt~~aa~la~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~rpg~HHA~pd~a~GFC~~Ndv 522 (620)
..+.|+|++ +++.++.|+.+ +.... ..+.++|+ |+
T Consensus 241 g~g~~~n~pl~~g~~~~~~D~~y~~~-~~~~v--~p~~~~f~-------------------------Pd----------- 281 (413)
T 2vqm_A 241 GVGFNVNMAFTGGLDPPMGDAEYLAA-FRTVV--MPIASEFA-------------------------PD----------- 281 (413)
T ss_dssp GTTCEEEEEECSCSSSCCCHHHHHHH-HHHTH--HHHHHHHC-------------------------CS-----------
T ss_pred ccccccccccccccCCCCCHHHHHHH-HHHHH--HHHHHhcC-------------------------CC-----------
Confidence 234677765 56889999988 44333 55667776 89
Q ss_pred HHHHHHHHHcCCccEEEEEEecccC--CCCCCCCCCCCeEEeecCCccccchhHHHHHHhcCCCeeecCCCCChhhHHHH
Q psy16742 523 ALAARYLIRHGIVRKVLIVDLDVHQ--HTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCADIDQL 600 (620)
Q Consensus 523 aia~~~l~~~~~~~rVlIvD~DvH~--GdG~if~D~~~vl~lS~~g~~~~~~~v~~~~~~~niPl~~~~gGGY~~~~~~l 600 (620)
++||++++|. |+. |+++.|+||..+|..++..+.+.+ ++|++.++||||+. +.+
T Consensus 282 ---------------livvsaG~Da~~~d~----D~lg~~~lt~~~~~~~~~~l~~~a---~~~~v~vleGGY~~--~~l 337 (413)
T 2vqm_A 282 ---------------VVLVSSGFDAVEGHP----TPLGGYNLSARCFGYLTKQLMGLA---GGRIVLALEGGHDL--TAI 337 (413)
T ss_dssp ---------------EEEEEECCTTBSSCT----TTTCCCCBCHHHHHHHHHHHHTSG---GGCEEEEECCCCCH--HHH
T ss_pred ---------------EEEEeCChhhcCCCC----CCCCCcccCHHHHHHHHHHHHHhc---CCCEEEEeCcCCCh--HHH
Confidence 8999866655 445 679999999999988887776653 78999999999976 455
Q ss_pred HHHHHHHHHH
Q psy16742 601 AQRQTIIHRA 610 (620)
Q Consensus 601 v~~h~~~~~~ 610 (620)
+.....++.+
T Consensus 338 ~~~~~~~~~~ 347 (413)
T 2vqm_A 338 CDASEACVSA 347 (413)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 19
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=36.58 E-value=31 Score=34.58 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCC
Q psy16742 195 SGYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229 (620)
Q Consensus 195 ~~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~D 229 (620)
..+...+.+.|..++++++||+|+.-.|.|.|-+.
T Consensus 130 ~~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpDH 164 (273)
T 3dff_A 130 HDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDH 164 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCCCChHH
Confidence 34567788889999999999999998877766543
No 20
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=34.09 E-value=36 Score=34.00 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHHhhcCCCEEEEecCCCccCCC
Q psy16742 196 GYQATLKEHLPGILAQFKPDLVIYDAGVDPHQHD 229 (620)
Q Consensus 196 ~Yl~a~~~vl~pil~~F~PdlIlvSAGfDa~~~D 229 (620)
.+...+.+.|..++++++||+|+.-.|.|.|-+.
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 3456788889999999999999998887776544
Done!