RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16742
(620 letters)
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 53.3 bits (127), Expect = 4e-08
Identities = 36/264 (13%), Positives = 79/264 (29%), Gaps = 30/264 (11%)
Query: 44 PPNHRFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFNGKTTE 103
P NH + + S + +ID+ K+LI+ + ++ L HT++Y++ + +
Sbjct: 17 PKNHPLKIPRVSLLLRFKDAMNLIDE-KELIKSRPATKEELLLFHTEDYINTLMEAERCQ 75
Query: 104 KEQKVTGFE---------WSAGLASRVRT----------DPVPTHVIAVYLPFFLQRRPV 144
K + S + + + + +V
Sbjct: 76 CVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKS 135
Query: 145 FFDIAAVLADLICIAVYLTFFLQRRPVFFDIAAVLADLIHFMV-------GINTQPVSGY 197
+ + + YL +R ++ D+ A D + ++ Y
Sbjct: 136 RANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 195
Query: 198 QATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHGECISSSAR---ISSEAG 254
++ + + K + + +D L E + + G
Sbjct: 196 AFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLG 255
Query: 255 VDPHQHDELGKLNLTDHGVKYILN 278
DP D L K NL++ N
Sbjct: 256 TDPLLEDYLSKFNLSNVAFLKAFN 279
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 52.9 bits (126), Expect = 5e-08
Identities = 30/240 (12%), Positives = 60/240 (25%), Gaps = 60/240 (25%)
Query: 61 LVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHKFFN----GKTTEKEQKVTGFE---- 112
L+ + K ++++P+ S HT Y+ G + G
Sbjct: 31 LIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCP 90
Query: 113 WSAGLASRVRTD--------------------------------------PVPTHVIAVY 134
+ G+ + V+ +
Sbjct: 91 ATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGIL 150
Query: 135 LPFFLQRRPVFFDIAAVLADLICIAV-----YLTFFLQRRPVFFDIAAVLADLI------ 183
R ++ D+ D + A +T L + F +
Sbjct: 151 RLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGR 210
Query: 184 HFMVGINTQPVSGYQ---ATLKEHLPGILAQFKPDLVIYDAGVDPHQHDELGKLNLTDHG 240
++ V + Q + + L + F P V+ G D D + N+T G
Sbjct: 211 YYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVG 270
Score = 32.5 bits (73), Expect = 0.14
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 502 RFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
HHA D +GFC +ND L L R ++L VDLD+H
Sbjct: 125 SGGWHHAKKDEASGFCYLNDAVLGILRLRRKF--ERILYVDLDLHH 168
Score = 29.4 bits (65), Expect = 1.5
Identities = 29/210 (13%), Positives = 51/210 (24%), Gaps = 61/210 (29%)
Query: 405 HRALIMEIGLPCYDGDGTAFIFDKDPAVFTFSMHCGRNYPFRKQCSDLDVAIDVGTDDAG 464
R L +++ L GDG F V T S+H F DVG
Sbjct: 157 ERILYVDLDLHH--GDGVEDAFSFTSKVMTVSLHKFSPGFFPGT----GDVSDVGLGKGR 210
Query: 465 NRTVALTWVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMNDMAL 524
+V + + + + + +P+ G
Sbjct: 211 YYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQ---------LGA-------- 253
Query: 525 AARYLIRHGIVRKVLIVDLDVHQHTRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIP 584
D + + G+ Y+L +
Sbjct: 254 -------------------DTIAGDP------MCSFNMTPVGIGKCLKYILQWQ----LA 284
Query: 585 VATVTGGGYCADIDQLAQRQTIIHRAATHV 614
+ GGGY ++ A R T++
Sbjct: 285 TLILGGGGY--NLANTA-------RCWTYL 305
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 40.3 bits (93), Expect = 5e-04
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 197 YQATLKEHLPGILAQFKPDLVIYDAGVDPHQHDE--LGKLNLTDHG 240
Y A + + I +F PDLV+ AG D + LG +++
Sbjct: 260 YLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKC 305
Score = 34.1 bits (77), Expect = 0.040
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 501 NRFSTHHAFPDHGAGFCLMNDMALAARYLIRHGIVRKVLIVDLDVHQ 547
R HHA GFC N +A+A R L + K+LIVD DVH
Sbjct: 150 VRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHH 196
Score = 32.6 bits (73), Expect = 0.13
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 38 KYECTLPPNHRFPMS--KFSKTFNYLVRDKVIDKSKQLIEPQQISESIAELVHTKEYVHK 95
K++C+ N R P + ++ L + + + + ++ S + VH++ +V
Sbjct: 16 KHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQC-ECLRGRKASLEELQSVHSERHV-- 72
Query: 96 FFNGKTTEKEQKVTGFEWSAGLASRVR 122
G K+ + + LA R+
Sbjct: 73 LLYGTNPLSRLKLDNGKLAGLLAQRMF 99
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
(SAMT) {Clarkia breweri [TaxId: 36903]}
Length = 359
Score = 32.2 bits (73), Expect = 0.19
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 472 WVTFLSQRSEKMRNNGIFLFLLRLSDPEINRFSTHHAFPDHGAGFCLMND-MALAARYLI 530
FL R++++ G + + L +R ST CL+ +A+A ++
Sbjct: 188 HALFLRCRAQEVVPGGRMVLTI-LGRRSEDRAST---------ECCLIWQLLAMALNQMV 237
Query: 531 RHGIVRKVLIVDLDVHQHTRSI 552
G++ + + ++ Q+T S
Sbjct: 238 SEGLIEEEKMDKFNIPQYTPSP 259
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 31.0 bits (69), Expect = 0.51
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 48 RFPMSKFSKTFNYLVRDKVIDKSKQLIEPQQIS--ESIAELVHTKEYVHKFFNGK---TT 102
RF + FS T N ++D SK L+ + +A+ + + FNG+ T
Sbjct: 35 RF--NHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKINYT 92
Query: 103 EK 104
E
Sbjct: 93 EG 94
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 27.6 bits (61), Expect = 1.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 570 RDYYVLDTAISAGIPVATVTGGGYCA 595
D Y+LD A G + G C+
Sbjct: 22 DDEYILDAAEEQGYDLPFSCRAGACS 47
>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 98
Score = 26.1 bits (57), Expect = 4.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 571 DYYVLDTAISAGIPVATVTGGGYCA 595
D Y+LD + + + GG C+
Sbjct: 21 DEYILDASERQNVELPYSCRGGSCS 45
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 281
Score = 27.2 bits (60), Expect = 5.4
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 195 SGYQATLKEHLPGILAQFKPDLVI 218
+G +K +L + ++++ DLVI
Sbjct: 17 AGRNI-IKNNLAQLKSKYQADLVI 39
>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B
(GidB) {Escherichia coli [TaxId: 562]}
Length = 207
Score = 26.6 bits (58), Expect = 8.5
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 11 KQHKFELTKEQKSQLDRLVHLPIIHTNK 38
K LT QK+QL V++ + NK
Sbjct: 10 KDAGISLTDHQKNQLIAYVNM-LHKWNK 36
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 25.3 bits (55), Expect = 9.0
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 14/47 (29%)
Query: 549 TRSIPVPSLTVLSSCVPGLYMRDYYVLDTAISAGIPVATVTGGGYCA 595
TR I + + D A I + G C
Sbjct: 14 TRFICIAQ--------------GETLSDAAYRQQINIPMDCREGECG 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.426
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,375,463
Number of extensions: 114687
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 23
Length of query: 620
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 529
Effective length of database: 1,158,166
Effective search space: 612669814
Effective search space used: 612669814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.1 bits)