BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16743
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OT3|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|E Chain E, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|F Chain F, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|G Chain G, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|1OT3|H Chain H, Crystal Structure Of Drosophila Deoxyribonucleotide Kinase
Complexed With The Substrate Deoxythymidine
pdb|2VP0|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP0|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
Length = 250
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%)
Query: 2 RWNFSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSE 61
+W FQ YV LT LQ T T+KK+++ ERS+ + R+CFVE R G L + + + E
Sbjct: 75 KWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEE 134
Query: 62 WYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112
WY ++E ++ + DLI+YLR+ P+ +ER+ +R R EE+CVPL YLQ LHE
Sbjct: 135 WYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHE 185
>pdb|1ZMX|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|G Chain G, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|H Chain H, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|E Chain E, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|F Chain F, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZMX|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase N64d Mutant In Complex With Thymidine
pdb|1ZM7|A Chain A, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|B Chain B, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|C Chain C, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
pdb|1ZM7|D Chain D, Crystal Structure Of D. Melanogaster Deoxyribonucleoside
Kinase Mutant N64d In Complex With Dttp
Length = 230
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%)
Query: 2 RWNFSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSE 61
+W FQ YV LT LQ T T+KK+++ ERS+ + R+CFVE R G L + + + E
Sbjct: 75 KWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEE 134
Query: 62 WYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112
WY ++E ++ + DLI+YLR+ P+ +ER+ +R R EE+CVPL YLQ LHE
Sbjct: 135 WYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHE 185
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1OE0|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|C Chain C, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|1OE0|D Chain D, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
In Complex With Dttp
pdb|2JJ8|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2JJ8|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP2|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP4|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP5|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP6|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|E Chain E, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|F Chain F, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|G Chain G, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VP9|H Chain H, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|A Chain A, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|B Chain B, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|C Chain C, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VQS|D Chain D, Structural Studies Of Nucleoside Analog And Feedback
Inhibitor Binding To Drosophila Melanogaster
Multisubstrate Deoxyribonucleoside Kinase
pdb|2VPP|A Chain A, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
pdb|2VPP|B Chain B, Drosophila Melanogaster Deoxyribonucleoside Kinase
Successfully Activates Gemcitabine In Transduced Cancer
Cell Lines
Length = 230
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%)
Query: 2 RWNFSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSE 61
+W FQ YV LT LQ T T+KK+++ ERS+ + R+CFVE R G L + + + E
Sbjct: 75 KWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEE 134
Query: 62 WYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112
WY ++E ++ + DLI+YLR+ P+ +ER+ +R R EE+CVPL YLQ LHE
Sbjct: 135 WYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHE 185
>pdb|2JCS|A Chain A, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
pdb|2JCS|B Chain B, Active Site Mutant Of Dnk From D. Melanogaster With Dttp
Bound
Length = 230
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%)
Query: 2 RWNFSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSE 61
+W FQ YV LT LQ T T+KK+++ ERS+ + R+CFVE R G L + + + E
Sbjct: 75 KWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEE 134
Query: 62 WYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112
WY ++E ++ + DLI+YLR+ P+ +ER+ +R R EE+CVPL YLQ LHE
Sbjct: 135 WYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHE 185
>pdb|2ZI3|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI3|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
pdb|2ZI9|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
pdb|2ZI9|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With
Cladribine+adp
Length = 279
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 110 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNET 169
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 170 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 228
>pdb|3QEJ|A Chain A, S74e-Dck Mutant In Complex With Udp
pdb|3QEJ|B Chain B, S74e-Dck Mutant In Complex With Udp
pdb|3QEN|A Chain A, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
pdb|3QEN|B Chain B, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
Length = 279
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 110 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNET 169
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 170 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 228
>pdb|2ZI4|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+adp
pdb|2ZI5|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|B Chain B, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|C Chain C, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI5|D Chain D, C4s Dck Variant Of Dck In Complex With L-Da+udp
pdb|2ZI6|A Chain A, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|B Chain B, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|C Chain C, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI6|D Chain D, C4s Dck Variant Of Dck In Complex With D-Da+udp
pdb|2ZI7|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZI7|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dg+udp
pdb|2ZIA|A Chain A, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|2ZIA|B Chain B, C4s Dck Variant Of Dck In Complex With Cladribine+udp
pdb|3MJR|A Chain A, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|B Chain B, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|C Chain C, Human Dck Complex With Acyclic Nucleoside
pdb|3MJR|D Chain D, Human Dck Complex With Acyclic Nucleoside
pdb|3KFX|A Chain A, Human Dck Complex With 5-Me Dc And Adp
pdb|3KFX|B Chain B, Human Dck Complex With 5-Me Dc And Adp
Length = 279
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 110 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNET 169
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 170 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 228
>pdb|2NO9|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NO9|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Troxacitabine And Adp.
pdb|2NOA|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NOA|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
Lamivudine And Adp.
pdb|2NO0|A Chain A, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO0|B Chain B, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
pdb|2NO1|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO1|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dc+adp
pdb|2NO6|A Chain A, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO6|B Chain B, C4s Dck Variant Of Dck In Complex With Ftc+adp
pdb|2NO7|A Chain A, C4s Dck Variant Of Dck In Complex With L-dc+adp
pdb|2NO7|B Chain B, C4s Dck Variant Of Dck In Complex With L-dc+adp
Length = 280
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 111 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNET 170
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 171 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 229
>pdb|1P5Z|B Chain B, Structure Of Human Dck Complexed With Cytarabine And
Adp-Mg
pdb|1P60|A Chain A, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P60|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, Space Group C 2 2 21
pdb|1P61|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
Adp, P 43 21 2 Space Group
pdb|1P62|B Chain B, Structure Of Human Dck Complexed With Gemcitabine And
Adp-Mg
pdb|2A7Q|A Chain A, Crystal Structure Of Human Dck Complexed With Clofarabine
And Adp
Length = 263
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 94 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNET 153
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 154 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 212
>pdb|2A2Z|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A2Z|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine And Uridine Diphosphate
pdb|2A30|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
pdb|2A30|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
With Deoxycytidine
Length = 248
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 79 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNET 138
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 139 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 197
>pdb|2QRN|A Chain A, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|B Chain B, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|C Chain C, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRN|D Chain D, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
Complex
pdb|2QRO|A Chain A, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|B Chain B, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|C Chain C, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
pdb|2QRO|D Chain D, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
Complex
Length = 280
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 111 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNET 170
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 171 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 229
>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With Adp And An Inhibitor
pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
With An Inhibitor
Length = 241
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y L+R++ Q K +K V FERS+ ++R+ F +++
Sbjct: 72 RWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNET 131
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 132 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 190
>pdb|3QEO|A Chain A, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
pdb|3QEO|B Chain B, S74e-R104m-D133a Dck Variant In Complex With
L-Deoxythymidine And Udp
Length = 279
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYV-------QLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y QL L + K +K V FERS+ + R+ F +++
Sbjct: 110 RWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNLYESESMNET 169
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 170 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 228
>pdb|3HP1|A Chain A, Crystal Structure Of Human Dck R104mD133A IN COMPLEX WITH
L-Dt And Adp
Length = 280
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYV-------QLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+F+FQ Y QL L + K +K V FERS+ + R+ F +++
Sbjct: 111 RWSFTFQTYACLSMIRAQLASLNGKLKDAEKPVLFFERSVYSARYIFASNLYESECMNET 170
Query: 55 EFLAMSEWYDWVEN--NMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+DW+ N + LD I+YL++ P+T R+ R R EE +PL+YL+ LH
Sbjct: 171 EWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 229
>pdb|2OCP|A Chain A, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|B Chain B, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|C Chain C, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|D Chain D, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|E Chain E, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|F Chain F, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|G Chain G, Crystal Structure Of Human Deoxyguanosine Kinase
pdb|2OCP|H Chain H, Crystal Structure Of Human Deoxyguanosine Kinase
Length = 241
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 2 RWNFSFQHYVQLTRLQMQTKV-------TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQ 54
RW+++FQ + L+RL++Q + K VQ+FERS+ ++R+ F + G LS
Sbjct: 69 RWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDI 128
Query: 55 EFLAMSEWYDWV--ENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
E+ +W+ ++ E I L +YL++ P+ +R+ +R R EE + L YL+ LH
Sbjct: 129 EWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLH 187
>pdb|2JAQ|A Chain A, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAQ|B Chain B, Structure Of Deoxyadenosine Kinase From M. Mycoides With
Bound Dctp
pdb|2JAT|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
pdb|2JAT|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Products Dcmp And A Flexible Dcdp Bound
Length = 205
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 72 IGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHES 113
+ D+++YLR KT R+ KR R EE + +Y ++L+++
Sbjct: 123 LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKN 164
>pdb|2JAS|A Chain A, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|B Chain B, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|C Chain C, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|D Chain D, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|E Chain E, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
pdb|2JAS|F Chain F, Structure Of Deoxyadenosine Kinase From M.Mycoides With
Bound Datp
Length = 206
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 72 IGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHES 113
+ D+++YLR KT R+ KR R EE + +Y ++L+++
Sbjct: 124 LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKN 165
>pdb|3L8F|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With Magnesium And
Phosphate
pdb|3L8G|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli Complexed With
D-Glycero-D-Manno- Heptose 1 ,7-Bisphosphate
Length = 187
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 32 RSLQNNRFCFV----EMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCP 84
R L+ F V + A+G ++ +F ++EW DW + D+ LD I Y CP
Sbjct: 40 RELKKXGFALVVVTNQSGIARGKFTEAQFETLTEWXDWSLADRDVDLDGIYY---CP 93
>pdb|2GMW|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|2GMW|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|3ESQ|A Chain A, Crystal Structure Of Calcium-Bound D,D-Heptose
1.7-Bisphosphate Phosphatase From E. Coli
pdb|3ESR|A Chain A, Crystal Structure Of D,D-Heptose1.7-Bisphosphate
Phosphatase From E. Coli In Complex With Calcium And
Phosphate
pdb|3L1U|A Chain A, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1U|B Chain B, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1V|A Chain A, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate.
pdb|3L1V|B Chain B, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate
Length = 211
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 32 RSLQNNRFCFV----EMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCP 84
R L+ F V + A+G ++ +F ++EW DW + D+ LD I Y CP
Sbjct: 60 RELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYY---CP 113
>pdb|3L8E|A Chain A, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
pdb|3L8E|B Chain B, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
Length = 187
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 32 RSLQNNRFCFV----EMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCP 84
R L+ F V + A+G ++ +F ++EW DW + D+ LD I Y CP
Sbjct: 40 RELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYY---CP 93
>pdb|3FJ7|A Chain A, Crystal Structure Of L-Phospholactate Bound Peb3
pdb|3FJ7|B Chain B, Crystal Structure Of L-Phospholactate Bound Peb3
Length = 231
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 32 RSLQNNRFCFV-EMARAQGFLSKQEFLAMSEWYDWVENNMDIGL------DLIVY 79
++ +NN FV A+ ++ + A W DW ++N DIG DL+VY
Sbjct: 138 QNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVY 192
>pdb|2HXW|A Chain A, Crystal Structure Of Peb3 From Campylobacter Jejuni
pdb|2HXW|B Chain B, Crystal Structure Of Peb3 From Campylobacter Jejuni
Length = 237
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 32 RSLQNNRFCFV-EMARAQGFLSKQEFLAMSEWYDWVENNMDIGL------DLIVY 79
++ +NN FV A+ ++ + A W DW ++N DIG DL+VY
Sbjct: 139 QNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVY 193
>pdb|3FJG|A Chain A, Crystal Structure Of 3pg Bound Peb3
pdb|3FJG|B Chain B, Crystal Structure Of 3pg Bound Peb3
pdb|3FJG|C Chain C, Crystal Structure Of 3pg Bound Peb3
pdb|3FJG|D Chain D, Crystal Structure Of 3pg Bound Peb3
pdb|3FJM|A Chain A, Crystal Structure Of Phosphate Bound Peb3
pdb|3FJM|B Chain B, Crystal Structure Of Phosphate Bound Peb3
Length = 251
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 32 RSLQNNRFCFV-EMARAQGFLSKQEFLAMSEWYDWVENNMDIGL------DLIVY 79
++ +NN FV A+ ++ + A W DW ++N DIG DL+VY
Sbjct: 158 QNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVY 212
>pdb|3FIR|A Chain A, Crystal Structure Of Glycosylated K135e Peb3
pdb|3FIR|B Chain B, Crystal Structure Of Glycosylated K135e Peb3
Length = 251
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 32 RSLQNNRFCFV-EMARAQGFLSKQEFLAMSEWYDWVENNMDIGL------DLIVY 79
++ +NN FV A+ ++ + A W DW ++N DIG DL+VY
Sbjct: 158 QNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVY 212
>pdb|2ZF8|A Chain A, Crystal Structure Of Moty
Length = 278
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 29 LFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIV-YLRSCPKTV 87
L + S ++ F + R L+K +S+ D++ +N DI L L+ Y S
Sbjct: 151 LLKYSFEDIAFTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKS 210
Query: 88 HERMLKRNRPEENCVPLDYLQSL 110
+ L R E DY QSL
Sbjct: 211 ASQSLSERRAESL---RDYFQSL 230
>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
Length = 1323
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 1 MRWNFSFQHYVQLTRLQM-QTKVTDKKVQLFERSLQN-NRFCFVEMARAQGFLSKQEFLA 58
+R N + Q ++ +R+Q Q+K+ K + + +N ++ C V + + E
Sbjct: 267 LRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTI 326
Query: 59 MSEWYDWVE--------NNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCV 102
W+ +E ++D+ + LI+Y S L RN+ + +C+
Sbjct: 327 SEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCI 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,149,565
Number of Sequences: 62578
Number of extensions: 104451
Number of successful extensions: 337
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 29
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)