Query psy16743
Match_columns 114
No_of_seqs 115 out of 918
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:51:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4235|consensus 100.0 1.8E-37 3.9E-42 217.5 9.2 113 1-113 79-193 (244)
2 PF01712 dNK: Deoxynucleoside 100.0 3.4E-36 7.3E-41 204.3 11.0 104 7-111 1-105 (146)
3 COG1428 Deoxynucleoside kinase 100.0 9.8E-30 2.1E-34 180.3 12.1 111 2-113 52-169 (216)
4 cd02030 NDUO42 NADH:Ubiquinone 99.9 3.4E-25 7.4E-30 158.8 12.3 110 2-113 68-182 (219)
5 cd01673 dNK Deoxyribonucleosid 99.9 9.1E-24 2E-28 147.8 12.3 110 2-113 51-164 (193)
6 KOG3877|consensus 99.9 5.4E-23 1.2E-27 151.4 10.9 108 4-113 145-258 (393)
7 PHA03132 thymidine kinase; Pro 99.7 4.5E-17 9.8E-22 130.2 10.6 96 12-113 338-441 (580)
8 PHA03136 thymidine kinase; Pro 99.6 4E-16 8.7E-21 119.2 6.4 82 26-113 149-230 (378)
9 PRK07933 thymidylate kinase; V 99.5 4.1E-14 8.8E-19 101.3 9.0 102 2-112 61-177 (213)
10 PHA03138 thymidine kinase; Pro 99.5 1.5E-13 3.2E-18 104.0 8.1 98 1-103 83-198 (340)
11 PRK13976 thymidylate kinase; P 99.4 1.4E-12 3.1E-17 93.2 7.9 94 6-112 62-160 (209)
12 PHA03134 thymidine kinase; Pro 99.3 1.4E-11 3E-16 93.3 7.7 80 26-113 121-202 (340)
13 PLN02924 thymidylate kinase 99.3 4.2E-11 9.1E-16 86.2 9.6 91 6-112 77-171 (220)
14 PRK00698 tmk thymidylate kinas 99.3 4.8E-11 1E-15 83.6 9.4 97 7-112 65-167 (205)
15 COG0125 Tmk Thymidylate kinase 99.3 2E-11 4.3E-16 87.4 7.4 95 7-111 65-167 (208)
16 PF02223 Thymidylate_kin: Thym 99.3 3.4E-11 7.3E-16 83.8 8.2 97 6-112 56-158 (186)
17 PRK13974 thymidylate kinase; P 99.2 2.2E-10 4.8E-15 81.7 9.3 99 5-112 70-173 (212)
18 PHA03135 thymidine kinase; Pro 99.1 8.3E-11 1.8E-15 89.2 5.4 108 1-113 87-198 (343)
19 cd01672 TMPK Thymidine monopho 99.1 4.5E-10 9.7E-15 77.8 8.4 96 8-112 64-165 (200)
20 PRK13975 thymidylate kinase; P 99.1 9.5E-10 2.1E-14 76.8 8.9 93 5-112 55-150 (196)
21 PRK13973 thymidylate kinase; P 99.1 1.9E-09 4.2E-14 76.9 10.1 79 8-97 67-152 (213)
22 TIGR00041 DTMP_kinase thymidyl 99.0 2.2E-09 4.8E-14 74.8 8.1 93 8-112 67-167 (195)
23 PF00693 Herpes_TK: Thymidine 98.8 1.6E-08 3.4E-13 75.1 5.7 79 27-113 104-184 (281)
24 PHA03133 thymidine kinase; Pro 98.3 1.8E-06 3.8E-11 66.2 7.1 79 26-112 151-231 (368)
25 KOG3327|consensus 98.2 6E-07 1.3E-11 63.3 2.2 85 9-109 69-157 (208)
26 PRK04040 adenylate kinase; Pro 97.3 0.00046 1E-08 48.5 4.5 41 72-112 109-152 (188)
27 PRK06762 hypothetical protein; 97.1 0.0031 6.7E-08 42.7 6.7 49 59-110 82-130 (166)
28 PRK14532 adenylate kinase; Pro 97.0 0.003 6.4E-08 43.7 6.3 24 72-95 105-128 (188)
29 PRK02496 adk adenylate kinase; 96.9 0.0041 8.8E-08 42.9 6.6 27 71-97 105-131 (184)
30 PRK13949 shikimate kinase; Pro 96.9 0.0025 5.4E-08 44.0 5.1 37 73-109 93-132 (169)
31 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0047 1E-07 42.4 6.4 26 72-97 102-127 (183)
32 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0054 1.2E-07 42.0 5.7 25 72-96 105-129 (188)
33 PRK14531 adenylate kinase; Pro 96.7 0.0043 9.3E-08 43.0 5.2 27 72-98 106-132 (183)
34 COG1936 Predicted nucleotide k 96.7 0.0012 2.7E-08 46.1 2.3 34 67-100 76-109 (180)
35 KOG3079|consensus 96.4 0.0038 8.1E-08 44.2 3.5 25 73-97 112-136 (195)
36 PRK14527 adenylate kinase; Pro 96.2 0.012 2.5E-07 41.0 5.0 25 71-95 109-133 (191)
37 PRK08118 topology modulation p 96.2 0.0013 2.9E-08 45.2 0.2 24 72-95 77-100 (167)
38 PRK13808 adenylate kinase; Pro 96.2 0.0095 2.1E-07 45.6 4.7 23 72-94 105-127 (333)
39 PRK14528 adenylate kinase; Pro 96.1 0.016 3.4E-07 40.5 5.1 23 72-94 106-128 (186)
40 PF13238 AAA_18: AAA domain; P 96.0 0.0059 1.3E-07 39.0 2.5 23 78-100 96-118 (129)
41 PRK06217 hypothetical protein; 95.6 0.013 2.9E-07 40.5 3.1 24 72-95 82-105 (183)
42 cd01428 ADK Adenylate kinase ( 95.6 0.031 6.7E-07 38.4 4.9 26 72-97 103-128 (194)
43 PRK03839 putative kinase; Prov 95.6 0.019 4E-07 39.5 3.7 25 72-96 78-102 (180)
44 PF13671 AAA_33: AAA domain; P 95.5 0.03 6.6E-07 36.5 4.5 29 72-100 96-124 (143)
45 TIGR03574 selen_PSTK L-seryl-t 95.5 0.077 1.7E-06 38.4 6.9 36 72-111 94-129 (249)
46 PLN02200 adenylate kinase fami 95.4 0.019 4.2E-07 41.7 3.3 24 72-95 144-167 (234)
47 cd00464 SK Shikimate kinase (S 95.2 0.059 1.3E-06 35.6 5.0 30 72-101 90-120 (154)
48 PRK08356 hypothetical protein; 95.2 0.049 1.1E-06 38.1 4.9 37 74-110 115-152 (195)
49 PRK08233 hypothetical protein; 95.0 0.022 4.7E-07 38.7 2.7 25 72-96 96-120 (182)
50 COG1102 Cmk Cytidylate kinase 94.7 0.23 5E-06 34.7 7.0 62 33-95 27-112 (179)
51 PRK04182 cytidylate kinase; Pr 94.6 0.046 9.9E-07 37.0 3.4 23 74-96 92-114 (180)
52 TIGR02322 phosphon_PhnN phosph 94.4 0.048 1E-06 37.3 3.3 26 74-99 111-136 (179)
53 TIGR02173 cyt_kin_arch cytidyl 94.4 0.059 1.3E-06 36.2 3.6 25 72-96 90-114 (171)
54 PRK14530 adenylate kinase; Pro 94.3 0.051 1.1E-06 38.5 3.2 24 72-95 104-127 (215)
55 PRK10078 ribose 1,5-bisphospho 94.3 0.12 2.5E-06 35.8 4.9 28 72-99 109-136 (186)
56 cd02020 CMPK Cytidine monophos 94.2 0.094 2E-06 34.2 4.2 23 72-94 81-103 (147)
57 TIGR01351 adk adenylate kinase 94.1 0.088 1.9E-06 37.2 4.2 23 73-95 103-125 (210)
58 PRK06761 hypothetical protein; 94.0 0.54 1.2E-05 35.3 8.4 84 12-101 124-211 (282)
59 COG4088 Predicted nucleotide k 93.6 0.36 7.7E-06 35.3 6.4 37 72-112 100-136 (261)
60 TIGR03707 PPK2_P_aer polyphosp 93.6 0.81 1.8E-05 33.4 8.3 73 24-100 88-162 (230)
61 PRK00625 shikimate kinase; Pro 93.6 0.17 3.7E-06 35.1 4.6 25 73-97 95-119 (173)
62 PLN02842 nucleotide kinase 93.4 0.15 3.2E-06 41.3 4.7 24 72-95 99-122 (505)
63 PRK14734 coaE dephospho-CoA ki 93.2 0.11 2.3E-06 36.8 3.2 25 73-97 125-150 (200)
64 PRK01184 hypothetical protein; 93.1 0.44 9.4E-06 32.7 6.1 26 72-97 102-127 (184)
65 cd02024 NRK1 Nicotinamide ribo 93.0 0.095 2.1E-06 36.9 2.7 24 72-95 129-152 (187)
66 PRK00279 adk adenylate kinase; 92.9 0.26 5.6E-06 34.9 4.8 24 72-95 105-128 (215)
67 PRK14731 coaE dephospho-CoA ki 92.8 0.15 3.2E-06 36.2 3.5 25 73-97 133-157 (208)
68 PRK05057 aroK shikimate kinase 92.7 0.14 3E-06 35.3 3.2 23 73-95 96-118 (172)
69 TIGR03575 selen_PSTK_euk L-ser 92.7 0.32 6.9E-06 37.5 5.4 26 72-97 153-178 (340)
70 TIGR03709 PPK2_rel_1 polyphosp 92.6 0.51 1.1E-05 35.1 6.2 73 24-100 113-187 (264)
71 PRK14529 adenylate kinase; Pro 92.4 0.32 7E-06 35.2 4.8 23 72-94 104-126 (223)
72 PRK00081 coaE dephospho-CoA ki 92.4 0.18 4E-06 35.3 3.5 25 72-96 123-147 (194)
73 PRK13946 shikimate kinase; Pro 92.3 0.34 7.4E-06 33.5 4.8 37 75-111 104-142 (184)
74 PF03976 PPK2: Polyphosphate k 92.3 0.38 8.2E-06 35.0 5.1 72 24-99 88-161 (228)
75 PLN02674 adenylate kinase 92.3 0.31 6.8E-06 35.8 4.7 23 72-94 136-158 (244)
76 TIGR01313 therm_gnt_kin carboh 92.3 0.17 3.7E-06 33.9 3.2 23 74-96 93-116 (163)
77 PRK03731 aroL shikimate kinase 92.0 0.18 3.9E-06 34.2 2.9 23 73-95 93-115 (171)
78 PF13521 AAA_28: AAA domain; P 91.9 0.98 2.1E-05 30.3 6.6 69 5-86 53-121 (163)
79 PRK09825 idnK D-gluconate kina 91.8 0.29 6.3E-06 33.9 3.9 26 72-97 97-122 (176)
80 PRK06547 hypothetical protein; 91.7 0.22 4.8E-06 34.5 3.2 21 76-96 120-140 (172)
81 TIGR03708 poly_P_AMP_trns poly 91.6 1.6 3.4E-05 35.4 8.3 73 24-100 97-171 (493)
82 COG2326 Uncharacterized conser 91.5 0.73 1.6E-05 34.3 5.9 72 24-100 131-205 (270)
83 PRK14732 coaE dephospho-CoA ki 91.5 0.25 5.3E-06 34.9 3.3 24 73-96 121-144 (196)
84 PF00406 ADK: Adenylate kinase 91.5 0.31 6.7E-06 32.4 3.7 22 72-93 101-122 (151)
85 PRK11545 gntK gluconate kinase 91.2 0.55 1.2E-05 31.9 4.8 26 72-97 89-114 (163)
86 cd00227 CPT Chloramphenicol (C 91.1 0.29 6.2E-06 33.5 3.3 25 73-97 110-134 (175)
87 cd02021 GntK Gluconate kinase 90.7 0.58 1.3E-05 30.8 4.4 25 72-96 96-120 (150)
88 COG3265 GntK Gluconate kinase 90.7 0.35 7.5E-06 33.3 3.3 22 76-97 93-114 (161)
89 PRK13951 bifunctional shikimat 90.6 0.49 1.1E-05 38.0 4.6 26 74-99 92-117 (488)
90 PRK06696 uridine kinase; Valid 90.5 0.29 6.3E-06 34.9 2.9 24 73-96 146-169 (223)
91 TIGR00152 dephospho-CoA kinase 90.4 0.62 1.4E-05 32.2 4.5 24 72-95 122-145 (188)
92 COG4639 Predicted kinase [Gene 90.4 0.85 1.8E-05 31.7 5.0 42 51-97 79-120 (168)
93 PRK05480 uridine/cytidine kina 90.3 0.52 1.1E-05 33.0 4.1 24 72-95 124-147 (209)
94 PRK09270 nucleoside triphospha 90.2 0.31 6.7E-06 34.9 2.9 23 73-95 160-182 (229)
95 PRK14730 coaE dephospho-CoA ki 89.9 0.41 8.8E-06 33.7 3.2 23 73-95 125-147 (195)
96 TIGR03708 poly_P_AMP_trns poly 89.9 1.2 2.7E-05 35.9 6.3 77 24-105 356-437 (493)
97 KOG3347|consensus 89.8 0.33 7.1E-06 33.7 2.6 27 73-99 92-118 (176)
98 PF00485 PRK: Phosphoribulokin 89.8 0.34 7.5E-06 33.7 2.8 29 72-100 125-158 (194)
99 PRK05541 adenylylsulfate kinas 89.6 0.58 1.3E-05 31.8 3.8 22 72-93 100-121 (176)
100 PLN02422 dephospho-CoA kinase 89.0 0.53 1.1E-05 34.4 3.4 24 73-96 125-148 (232)
101 PRK14738 gmk guanylate kinase; 89.0 0.57 1.2E-05 33.1 3.4 25 73-97 122-148 (206)
102 PRK13948 shikimate kinase; Pro 88.9 0.46 1E-05 33.3 2.9 24 75-98 104-127 (182)
103 PRK13947 shikimate kinase; Pro 88.7 0.53 1.1E-05 31.7 3.0 21 75-95 95-115 (171)
104 COG0703 AroK Shikimate kinase 88.6 1.1 2.4E-05 31.3 4.6 24 76-99 97-121 (172)
105 cd02022 DPCK Dephospho-coenzym 88.5 0.63 1.4E-05 32.0 3.3 25 72-96 120-144 (179)
106 PRK07667 uridine kinase; Provi 87.2 0.69 1.5E-05 32.3 2.9 25 73-97 138-162 (193)
107 PF01583 APS_kinase: Adenylyls 87.1 0.5 1.1E-05 32.5 2.1 27 74-100 100-130 (156)
108 PF01202 SKI: Shikimate kinase 87.0 0.73 1.6E-05 31.0 2.9 22 75-96 86-107 (158)
109 cd02023 UMPK Uridine monophosp 87.0 0.63 1.4E-05 32.3 2.6 23 72-94 117-139 (198)
110 PRK08154 anaerobic benzoate ca 86.6 1.1 2.5E-05 33.7 4.0 22 74-95 227-248 (309)
111 PRK00131 aroK shikimate kinase 86.6 0.86 1.9E-05 30.4 3.1 23 74-96 97-119 (175)
112 COG0237 CoaE Dephospho-CoA kin 86.4 0.9 2E-05 32.4 3.2 23 74-96 124-146 (201)
113 PHA02530 pseT polynucleotide k 86.2 3.3 7.1E-05 30.5 6.2 21 77-97 106-126 (300)
114 TIGR00235 udk uridine kinase. 85.7 0.82 1.8E-05 32.1 2.7 23 72-94 124-146 (207)
115 PRK07261 topology modulation p 85.6 0.86 1.9E-05 31.2 2.7 23 72-94 77-99 (171)
116 PTZ00301 uridine kinase; Provi 85.4 0.83 1.8E-05 32.7 2.7 23 73-95 126-148 (210)
117 cd02025 PanK Pantothenate kina 84.4 1.1 2.4E-05 32.1 2.9 22 73-94 128-149 (220)
118 PTZ00451 dephospho-CoA kinase; 84.2 1.4 2.9E-05 32.4 3.3 23 74-96 137-159 (244)
119 PLN02459 probable adenylate ki 84.0 1.2 2.7E-05 33.0 3.1 24 72-95 131-154 (261)
120 COG2019 AdkA Archaeal adenylat 83.9 2.7 5.8E-05 29.7 4.5 29 72-100 108-139 (189)
121 PTZ00088 adenylate kinase 1; P 83.4 1.5 3.2E-05 31.8 3.3 24 72-95 108-131 (229)
122 COG3709 Uncharacterized compon 83.0 0.94 2E-05 31.9 2.0 25 76-100 117-141 (192)
123 PRK03333 coaE dephospho-CoA ki 82.7 1.4 3.1E-05 34.4 3.1 27 73-99 123-150 (395)
124 COG0572 Udk Uridine kinase [Nu 82.3 1.1 2.4E-05 32.5 2.2 29 72-100 126-159 (218)
125 PRK14733 coaE dephospho-CoA ki 81.7 2 4.4E-05 30.6 3.4 23 74-96 129-151 (204)
126 PF01121 CoaE: Dephospho-CoA k 81.2 1.7 3.7E-05 30.3 2.8 24 72-95 121-144 (180)
127 PRK05416 glmZ(sRNA)-inactivati 79.4 6.1 0.00013 29.7 5.4 34 58-93 72-105 (288)
128 TIGR01663 PNK-3'Pase polynucle 78.4 6.2 0.00013 32.3 5.5 28 73-100 447-474 (526)
129 cd02029 PRK_like Phosphoribulo 78.3 1.8 3.9E-05 32.5 2.3 39 72-111 139-182 (277)
130 PRK03846 adenylylsulfate kinas 76.4 5.6 0.00012 27.7 4.2 15 76-90 124-138 (198)
131 PLN02199 shikimate kinase 75.8 3.4 7.3E-05 31.5 3.1 19 75-93 196-214 (303)
132 PRK13477 bifunctional pantoate 75.4 6.3 0.00014 32.1 4.8 23 72-94 419-441 (512)
133 PRK14021 bifunctional shikimat 75.2 6.6 0.00014 32.0 4.9 23 75-97 104-127 (542)
134 TIGR00554 panK_bact pantothena 73.6 3.8 8.2E-05 30.9 2.9 23 73-95 196-218 (290)
135 TIGR03263 guanyl_kin guanylate 73.0 7.5 0.00016 26.2 4.1 29 72-100 111-139 (180)
136 PRK14526 adenylate kinase; Pro 72.5 5.2 0.00011 28.5 3.3 21 75-95 103-123 (211)
137 PRK00889 adenylylsulfate kinas 71.5 3.7 8.1E-05 27.8 2.3 18 74-91 100-117 (175)
138 PLN02348 phosphoribulokinase 71.2 4.5 9.7E-05 31.9 2.9 29 72-100 181-214 (395)
139 PRK15453 phosphoribulokinase; 70.4 3.5 7.5E-05 31.2 2.1 37 72-109 145-186 (290)
140 cd02028 UMPK_like Uridine mono 70.4 3.5 7.6E-05 28.4 2.0 30 73-102 117-152 (179)
141 COG0529 CysC Adenylylsulfate k 69.4 8.6 0.00019 27.4 3.7 26 74-99 121-150 (197)
142 smart00072 GuKc Guanylate kina 68.7 4.6 9.9E-05 27.8 2.3 24 76-99 116-140 (184)
143 PHA00729 NTP-binding motif con 67.5 8.6 0.00019 28.0 3.6 27 72-98 117-143 (226)
144 PRK14737 gmk guanylate kinase; 66.4 6.1 0.00013 27.5 2.6 24 76-99 118-142 (186)
145 TIGR00017 cmk cytidylate kinas 66.3 8.2 0.00018 27.6 3.3 24 72-95 136-159 (217)
146 cd02027 APSK Adenosine 5'-phos 65.8 5.6 0.00012 26.5 2.2 21 73-93 96-116 (149)
147 COG3589 Uncharacterized conser 65.0 36 0.00078 26.5 6.6 72 30-112 10-89 (360)
148 PRK05439 pantothenate kinase; 64.4 7.8 0.00017 29.5 3.0 21 74-94 217-237 (311)
149 cd02026 PRK Phosphoribulokinas 63.6 8 0.00017 28.7 2.9 27 73-99 115-146 (273)
150 PRK12339 2-phosphoglycerate ki 62.6 18 0.00039 25.5 4.4 37 76-112 121-159 (197)
151 PF08433 KTI12: Chromatin asso 61.4 18 0.0004 26.8 4.4 38 72-111 97-134 (270)
152 PF13207 AAA_17: AAA domain; P 58.5 4.9 0.00011 25.1 0.9 22 73-94 89-110 (121)
153 TIGR00455 apsK adenylylsulfate 57.7 20 0.00044 24.3 3.9 17 74-90 116-132 (184)
154 PRK07429 phosphoribulokinase; 57.5 12 0.00026 28.6 3.0 19 72-90 123-141 (327)
155 COG1072 CoaA Panthothenate kin 57.3 11 0.00023 28.5 2.6 21 74-94 211-231 (283)
156 cd02019 NK Nucleoside/nucleoti 56.3 12 0.00025 21.6 2.1 11 72-82 53-63 (69)
157 PF09851 SHOCT: Short C-termin 54.3 24 0.00052 17.3 2.8 18 43-60 9-26 (31)
158 PRK00300 gmk guanylate kinase; 52.5 28 0.00061 23.9 4.0 24 76-99 118-142 (205)
159 COG0194 Gmk Guanylate kinase [ 51.3 32 0.00068 24.5 4.0 29 74-102 114-143 (191)
160 PF01320 Colicin_Pyocin: Colic 51.2 21 0.00046 22.0 2.8 52 41-93 18-73 (85)
161 PF00625 Guanylate_kin: Guanyl 48.0 24 0.00053 24.0 3.1 23 76-98 116-139 (183)
162 KOG3078|consensus 47.1 28 0.00061 25.6 3.3 28 66-94 111-138 (235)
163 KOG1016|consensus 45.1 1.6E+02 0.0035 26.2 7.7 92 9-109 358-483 (1387)
164 PF06414 Zeta_toxin: Zeta toxi 44.9 20 0.00044 24.8 2.3 20 76-95 123-142 (199)
165 PF01715 IPPT: IPP transferase 44.8 25 0.00055 25.8 2.9 23 74-96 153-175 (253)
166 COG0563 Adk Adenylate kinase a 44.8 57 0.0012 22.6 4.5 24 72-95 105-128 (178)
167 PF07931 CPT: Chloramphenicol 44.7 44 0.00095 23.2 3.9 26 72-97 108-133 (174)
168 PF14394 DUF4423: Domain of un 43.2 25 0.00054 24.3 2.5 58 49-110 11-68 (171)
169 KOG3354|consensus 40.2 32 0.00069 24.2 2.6 22 76-97 120-141 (191)
170 PRK05537 bifunctional sulfate 39.1 22 0.00048 29.3 2.0 17 76-92 494-510 (568)
171 PF06420 Mgm101p: Mitochondria 38.4 27 0.0006 24.3 2.0 22 71-95 33-54 (171)
172 PRK00023 cmk cytidylate kinase 37.9 45 0.00098 23.8 3.3 22 72-93 138-159 (225)
173 PF06180 CbiK: Cobalt chelatas 37.8 49 0.0011 24.6 3.5 51 58-112 19-69 (262)
174 TIGR03751 conj_TIGR03751 conju 37.2 30 0.00065 22.7 2.0 13 68-81 71-83 (116)
175 KOG0635|consensus 36.5 18 0.00039 25.4 0.9 26 74-99 129-158 (207)
176 KOG1344|consensus 35.3 76 0.0017 23.8 4.0 30 48-79 225-254 (324)
177 TIGR02147 Fsuc_second hypothet 35.0 55 0.0012 24.4 3.4 58 49-110 109-166 (271)
178 PF02224 Cytidylate_kin: Cytid 33.8 54 0.0012 22.6 2.9 19 72-90 78-96 (157)
179 KOG4763|consensus 31.5 40 0.00086 20.3 1.7 28 84-111 36-65 (77)
180 COG0645 Predicted kinase [Gene 31.3 1.3E+02 0.0028 21.0 4.5 41 51-96 86-126 (170)
181 KOG2792|consensus 31.3 78 0.0017 23.9 3.6 34 50-84 153-186 (280)
182 PHA02891 hypothetical protein; 31.2 44 0.00096 21.4 2.0 29 81-111 88-119 (120)
183 PF02702 KdpD: Osmosensitive K 30.8 45 0.00099 24.1 2.2 21 73-93 154-174 (211)
184 PF15467 SGIII: Secretogranin- 30.4 68 0.0015 25.3 3.2 30 39-68 297-326 (453)
185 PLN02318 phosphoribulokinase/u 30.0 40 0.00087 28.5 2.1 29 72-100 175-208 (656)
186 PF13189 Cytidylate_kin2: Cyti 29.2 72 0.0016 21.8 3.0 22 74-95 114-135 (179)
187 COG4064 MtrG Tetrahydromethano 28.7 1.4E+02 0.0029 17.9 3.7 38 50-97 11-49 (75)
188 COG2269 Truncated, possibly in 28.6 48 0.001 25.4 2.1 20 76-95 69-88 (322)
189 TIGR00174 miaA tRNA isopenteny 27.6 62 0.0014 24.4 2.6 20 76-95 187-206 (287)
190 PF06925 MGDG_synth: Monogalac 26.8 1.5E+02 0.0032 19.8 4.2 26 72-97 88-114 (169)
191 PF13496 DUF4120: Domain of un 25.8 41 0.00089 20.9 1.1 14 81-94 20-33 (95)
192 PF08303 tRNA_lig_kinase: tRNA 25.5 2.4E+02 0.0052 19.7 6.8 13 85-97 109-121 (168)
193 PF09545 RE_AccI: AccI restric 24.8 1.5E+02 0.0033 22.8 4.2 35 53-87 78-112 (366)
194 PRK00091 miaA tRNA delta(2)-is 24.8 75 0.0016 24.1 2.6 20 76-95 191-210 (307)
195 COG3411 Ferredoxin [Energy pro 24.6 1.2E+02 0.0026 17.7 2.9 30 72-101 22-54 (64)
196 cd00280 TRFH Telomeric Repeat 24.1 2.5E+02 0.0053 20.2 4.9 53 39-94 15-69 (200)
197 TIGR02742 TrbC_Ftype type-F co 23.9 1.1E+02 0.0024 20.3 3.0 36 74-110 94-129 (130)
198 PF14044 NETI: NETI protein 23.8 69 0.0015 18.3 1.7 13 83-95 9-21 (57)
199 PF00479 G6PD_N: Glucose-6-pho 23.5 1.5E+02 0.0032 20.6 3.8 42 56-97 87-131 (183)
200 PLN02165 adenylate isopentenyl 23.3 82 0.0018 24.4 2.6 20 76-95 177-196 (334)
201 PRK14729 miaA tRNA delta(2)-is 22.9 85 0.0018 23.8 2.6 20 76-95 189-208 (300)
202 PRK05506 bifunctional sulfate 22.8 1.1E+02 0.0024 25.4 3.4 18 74-91 558-575 (632)
203 PLN02748 tRNA dimethylallyltra 22.8 82 0.0018 25.5 2.6 20 76-95 229-248 (468)
204 COG2096 cob(I)alamin adenosylt 22.5 2.9E+02 0.0063 19.6 5.5 63 50-113 84-159 (184)
205 KOG0092|consensus 21.9 2.1E+02 0.0045 20.6 4.2 35 52-88 89-123 (200)
206 PF13404 HTH_AsnC-type: AsnC-t 21.7 53 0.0012 17.2 1.0 13 81-93 28-40 (42)
207 PF13448 DUF4114: Domain of un 21.1 54 0.0012 19.5 1.0 11 74-84 73-83 (83)
208 PF03668 ATP_bind_2: P-loop AT 21.1 1.2E+02 0.0025 23.0 3.0 23 74-96 82-104 (284)
209 PF02320 UCR_hinge: Ubiquinol- 20.4 1.8E+02 0.004 16.8 3.1 18 84-101 24-41 (65)
210 COG0283 Cmk Cytidylate kinase 20.1 1.3E+02 0.0029 21.9 3.0 23 72-94 136-159 (222)
No 1
>KOG4235|consensus
Probab=100.00 E-value=1.8e-37 Score=217.52 Aligned_cols=113 Identities=42% Similarity=0.811 Sum_probs=108.3
Q ss_pred CccchHHHHHHHHHHHHHHHhhhcC--CcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEE
Q psy16743 1 MRWNFSFQHYVQLTRLQMQTKVTDK--KVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIV 78 (114)
Q Consensus 1 ~r~~~~~Q~~~l~~R~~~~~~~~~~--~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~I 78 (114)
.||||+||.|++++|+++++...++ ++.+||||++||||||++++|++|.|++.|+.+|.+|++++.......||++|
T Consensus 79 ~Rws~tfQtYv~ltrL~~~~~p~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiI 158 (244)
T KOG4235|consen 79 ARWSYTFQTYVFLTRLKVQLEPFNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGII 158 (244)
T ss_pred HhheehhhHHHHHHHHHHHhcCCCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEE
Confidence 4899999999999999999998775 89999999999999999999999999999999999999999988778999999
Q ss_pred EEecCHHHHHHHHHhcCCccccCCcHHHHHHHHhc
Q psy16743 79 YLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHES 113 (114)
Q Consensus 79 yL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~~ 113 (114)
||+++||+|++||.+|+|.+|++|+++||+.||..
T Consensus 159 YLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~ 193 (244)
T KOG4235|consen 159 YLRASPETCYKRIYLRAREEEKGIPLKYLEALHEL 193 (244)
T ss_pred EeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999963
No 2
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=100.00 E-value=3.4e-36 Score=204.28 Aligned_cols=104 Identities=37% Similarity=0.640 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccC-CCEEEEEecCHH
Q psy16743 7 FQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIG-LDLIVYLRSCPK 85 (114)
Q Consensus 7 ~Q~~~l~~R~~~~~~~~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~-pdl~IyL~~~pe 85 (114)
||++|+++|++++++...++++|+|||++||.+||+.++++.|.+++.|++.|.++++++...+ +. ||++|||++||+
T Consensus 1 ~Q~~~l~~R~~~~~~~~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~-~~~pdl~IYL~~~~e 79 (146)
T PF01712_consen 1 FQLYFLLSRFEQYKELNTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEI-PKSPDLIIYLDASPE 79 (146)
T ss_dssp HHHHHHHHHHHHHHHSTSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHC-CHH-SEEEEEE--HH
T ss_pred CcHHHHHHHHHHHHHHhcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-hccCCeEEEEeCCHH
Confidence 7999999999999998788899999999998799999999999999999999999999999999 78 999999999999
Q ss_pred HHHHHHHhcCCccccCCcHHHHHHHH
Q psy16743 86 TVHERMLKRNRPEENCVPLDYLQSLH 111 (114)
Q Consensus 86 ~~~~Ri~~Rgr~~E~~i~~~Yl~~l~ 111 (114)
+|++||++|||++|.+++.+||+.||
T Consensus 80 ~~~~RI~kRgR~~E~~i~~~Yl~~L~ 105 (146)
T PF01712_consen 80 TCLERIKKRGREEEKNIPLEYLERLH 105 (146)
T ss_dssp HHHHHHHHCTTGGGTTS-HHHHHHHH
T ss_pred HHHHHHHHhCCchhcCCCHHHHHHHh
Confidence 99999999999999999999999999
No 3
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=9.8e-30 Score=180.33 Aligned_cols=111 Identities=32% Similarity=0.488 Sum_probs=100.6
Q ss_pred ccchHHHHHHHHHHHHHHHhhhcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh---hccc-CCCEE
Q psy16743 2 RWNFSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVEN---NMDI-GLDLI 77 (114)
Q Consensus 2 r~~~~~Q~~~l~~R~~~~~~~~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~---~~~~-~pdl~ 77 (114)
||||.+|+||+++|+++++.+.+....|.|||+++|.++|++..++.|++++.+++.|.++++.++. .. | .||++
T Consensus 52 ~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~-p~~Pdll 130 (216)
T COG1428 52 RYAFLLQIYFLLNRFKKIKKALSDKNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYL-PGRPDLL 130 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccC-CCCCCEE
Confidence 7999999999999999999998766699999999997799999999999999999999999997543 44 5 99999
Q ss_pred EEEecCHHHHHHHHHhcCCccccCCc---HHHHHHHHhc
Q psy16743 78 VYLRSCPKTVHERMLKRNRPEENCVP---LDYLQSLHES 113 (114)
Q Consensus 78 IyL~~~pe~~~~Ri~~Rgr~~E~~i~---~~Yl~~l~~~ 113 (114)
|||++++++.++||.+|||++|.... .+|++.||.+
T Consensus 131 IyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~ 169 (216)
T COG1428 131 IYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRR 169 (216)
T ss_pred EEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999996443 4699999964
No 4
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.93 E-value=3.4e-25 Score=158.75 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=102.0
Q ss_pred ccchHHHHHHHHHHHHHHHhhh-----cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCE
Q psy16743 2 RWNFSFQHYVQLTRLQMQTKVT-----DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDL 76 (114)
Q Consensus 2 r~~~~~Q~~~l~~R~~~~~~~~-----~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl 76 (114)
+|++.+|++++++|++++.+.. .+.++|+|||++|+ ++|+.++++.|.+.+.+++.|.++++.+...+ +.||+
T Consensus 68 ~~~~~~q~~~~~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~-~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~-~~Pd~ 145 (219)
T cd02030 68 GNSYRLQSWMYSSRLLQYSDALEHLLSTGQGVVLERSPFSD-FVFLEAMYKQGYIRKQCVDHYNEVKGNTIPEL-LPPHL 145 (219)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEecchhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-CCCCE
Confidence 7999999999999999987652 36789999999999 89999999999999999999999999888887 89999
Q ss_pred EEEEecCHHHHHHHHHhcCCccccCCcHHHHHHHHhc
Q psy16743 77 IVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHES 113 (114)
Q Consensus 77 ~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~~ 113 (114)
+|||++||++|++||.+|||..|..++.+||+.+++.
T Consensus 146 ~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~ 182 (219)
T cd02030 146 VIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENA 182 (219)
T ss_pred EEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999864
No 5
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.91 E-value=9.1e-24 Score=147.81 Aligned_cols=110 Identities=36% Similarity=0.638 Sum_probs=99.9
Q ss_pred ccchHHHHHHHHHHHHHHHhhh----cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEE
Q psy16743 2 RWNFSFQHYVQLTRLQMQTKVT----DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLI 77 (114)
Q Consensus 2 r~~~~~Q~~~l~~R~~~~~~~~----~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~ 77 (114)
+|++++|++++.+|++++.++. +++++|+|||++|+ ++|+..++..|.+.+.+++.|.++++.+.... +.||++
T Consensus 51 ~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~vI~DR~~~S~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pd~~ 128 (193)
T cd01673 51 RWAFPFQLYFLLSRLKQYKDALEHLSTGQGVILERSIFSD-RVFAEANLKEGGIMKTEYDLYNELFDNLIPEL-LPPDLV 128 (193)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhcccCCceEEEcChhhh-HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcC-CCCCEE
Confidence 5899999999999999998885 57789999999999 68888877778888889999999999988776 899999
Q ss_pred EEEecCHHHHHHHHHhcCCccccCCcHHHHHHHHhc
Q psy16743 78 VYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHES 113 (114)
Q Consensus 78 IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~~ 113 (114)
|||++||++|++|+++|||+.|...+.+|++.+++.
T Consensus 129 i~l~~~~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~ 164 (193)
T cd01673 129 IYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEA 164 (193)
T ss_pred EEEeCCHHHHHHHHHhcCcHhhhcCCHHHHHHHHHH
Confidence 999999999999999999998988889999999863
No 6
>KOG3877|consensus
Probab=99.89 E-value=5.4e-23 Score=151.43 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHHhhh-----cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEE
Q psy16743 4 NFSFQHYVQLTRLQMQTKVT-----DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIV 78 (114)
Q Consensus 4 ~~~~Q~~~l~~R~~~~~~~~-----~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~I 78 (114)
++.||.++++.|+.|+.++. ++|+||+|||++|| |||+++|+.+|.|....+..|..+-...+..+ ..|+|+|
T Consensus 145 sa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SD-FVF~eAM~~qgyi~~~~~~hYnevr~nti~~l-l~PHLVi 222 (393)
T KOG3877|consen 145 SAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSD-FVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQL-LWPHLVI 222 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchh-HHHHHHHHhcCcchhHHHHHHHHHHhhhhhhh-cCccEEE
Confidence 67899999999999999994 69999999999999 99999999999999999999999998888888 8999999
Q ss_pred EEecCHHHHHHHHHhcCCccccCC-cHHHHHHHHhc
Q psy16743 79 YLRSCPKTVHERMLKRNRPEENCV-PLDYLQSLHES 113 (114)
Q Consensus 79 yL~~~pe~~~~Ri~~Rgr~~E~~i-~~~Yl~~l~~~ 113 (114)
||++|+..|+++|++||.+.|..+ +..||+.++++
T Consensus 223 Yld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~ 258 (393)
T KOG3877|consen 223 YLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEES 258 (393)
T ss_pred EEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHH
Confidence 999999999999999999999854 45999998763
No 7
>PHA03132 thymidine kinase; Provisional
Probab=99.72 E-value=4.5e-17 Score=130.22 Aligned_cols=96 Identities=28% Similarity=0.314 Sum_probs=75.1
Q ss_pred HHHHHHHHH---hh-----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecC
Q psy16743 12 QLTRLQMQT---KV-----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSC 83 (114)
Q Consensus 12 l~~R~~~~~---~~-----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~ 83 (114)
+++|.+++. .. ..+.++|+||+++|+..||..+.+++|.++..++ ++++.....+.||++|||+++
T Consensus 338 ~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~------~~lL~~~~~~~PDLiIyLdv~ 411 (580)
T PHA03132 338 LATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHF------IQLLSTFRAHEGDVIVLLKLN 411 (580)
T ss_pred HHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHH------HHHHHHhcccCCCEEEEEeCC
Confidence 457777753 21 2356899999999997789998899898765442 333322112579999999999
Q ss_pred HHHHHHHHHhcCCccccCCcHHHHHHHHhc
Q psy16743 84 PKTVHERMLKRNRPEENCVPLDYLQSLHES 113 (114)
Q Consensus 84 pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~~ 113 (114)
|++|++||++|||.+|..++.+||++|+++
T Consensus 412 pe~alkRIkkRgR~~E~~IdleYL~rLre~ 441 (580)
T PHA03132 412 SEENLRRVKKRGRKEEKGINLTYLKELNWA 441 (580)
T ss_pred HHHHHHHHHhcCchhhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999874
No 8
>PHA03136 thymidine kinase; Provisional
Probab=99.63 E-value=4e-16 Score=119.18 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=72.2
Q ss_pred CcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccCCcHH
Q psy16743 26 KVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLD 105 (114)
Q Consensus 26 ~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~ 105 (114)
..+++||++++.+.+|..+.+..|.|+..++..+..+ ...+ |+||++|||+++|+++++||++|||++| .++.+
T Consensus 149 ~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll~~----~~~~-p~pD~IIyL~l~~e~~~~RI~kRgR~~E-~I~~~ 222 (378)
T PHA03136 149 ILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALISG----IPDE-PHGGNIVIMDLDECEHAERIIARGRPGE-AIDVR 222 (378)
T ss_pred eEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHHhh----CcCC-CCCCEEEEEeCCHHHHHHHHHHcCCCcc-CCCHH
Confidence 4689999999999999999999999998776544433 3344 8899999999999999999999999999 89999
Q ss_pred HHHHHHhc
Q psy16743 106 YLQSLHES 113 (114)
Q Consensus 106 Yl~~l~~~ 113 (114)
||+.||+.
T Consensus 223 YL~~L~~~ 230 (378)
T PHA03136 223 FLCALHNI 230 (378)
T ss_pred HHHHHHHH
Confidence 99999974
No 9
>PRK07933 thymidylate kinase; Validated
Probab=99.54 E-value=4.1e-14 Score=101.28 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=67.4
Q ss_pred ccchHHHHHHHHHHHHHHHhhh----cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh---hcccCC
Q psy16743 2 RWNFSFQHYVQLTRLQMQTKVT----DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVEN---NMDIGL 74 (114)
Q Consensus 2 r~~~~~Q~~~l~~R~~~~~~~~----~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~---~~~~~p 74 (114)
.+.++.+++|+++|+++..... .+.+||+||+++|+ .+|+.+......-.....|...+.. .+ |.|
T Consensus 61 ~~~~~~~llf~a~R~~~~~~I~p~l~~g~~VI~DRy~~S~------~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P 133 (213)
T PRK07933 61 DSVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASN------AAYSAARLHQDADGEAVAWVAELEFGRLGL-PVP 133 (213)
T ss_pred CCHHHHHHHHhhhhhhhHHHHHHHHhCCCEEEECCccchh------HHHhccCCCcccchHHHHHHHHHHHhhcCC-CCC
Confidence 3677889999999999865442 35678999966666 3443322110000112223333322 34 789
Q ss_pred CEEEEEecCHHHHHHHHHhcCCc--------cccCCcHHHHHHHHh
Q psy16743 75 DLIVYLRSCPKTVHERMLKRNRP--------EENCVPLDYLQSLHE 112 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~Rgr~--------~E~~i~~~Yl~~l~~ 112 (114)
|++|||++||+++++|+++||+. +|. +.+|++++.+
T Consensus 134 Dl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~--~~~f~~~v~~ 177 (213)
T PRK07933 134 DLQVLLDVPVELAAERARRRAAQDADRARDAYER--DDGLQQRTGA 177 (213)
T ss_pred CEEEEecCCHHHHHHHHHhhccccCCcccccccc--cHHHHHHHHH
Confidence 99999999999999999999853 443 4789988875
No 10
>PHA03138 thymidine kinase; Provisional
Probab=99.48 E-value=1.5e-13 Score=103.98 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=72.0
Q ss_pred CccchHHHHHH----------HHHHHHHHHh-----hhcCCcccc--cccccccHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy16743 1 MRWNFSFQHYV----------QLTRLQMQTK-----VTDKKVQLF--ERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWY 63 (114)
Q Consensus 1 ~r~~~~~Q~~~----------l~~R~~~~~~-----~~~~~~~i~--eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~ 63 (114)
+||.+.+|++| +.+.+..... ..+.+.+++ |||++|..+||-.+.|..|.|+..++-..
T Consensus 83 ~~~~a~~Q~~f~tP~~~~~~~~~~~l~~~~~~~~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L---- 158 (340)
T PHA03138 83 QRLTAHFQGLFCSPHAILHAKILALMDQNPNDLALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGF---- 158 (340)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHhccccCccccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHH----
Confidence 37999999999 2332332221 112344555 99999999999999999999999887654
Q ss_pred HHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccC-Cc
Q psy16743 64 DWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENC-VP 103 (114)
Q Consensus 64 ~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~-i~ 103 (114)
.++.+...+..|++||+..++| +++||++|+|++|.. ++
T Consensus 159 ~~~~p~~~~g~nLVv~~l~~~E-~~~RL~~R~R~gE~~D~~ 198 (340)
T PHA03138 159 LFALPAEPEGTNLIVCTVSLPN-HLSRISKRARPGEIIDLP 198 (340)
T ss_pred HHhcCCCCCCCcEEEEeCCcHH-HHHHHHhcCCCccccchH
Confidence 3333443356689999997777 999999999999983 44
No 11
>PRK13976 thymidylate kinase; Provisional
Probab=99.39 E-value=1.4e-12 Score=93.19 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhh-----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEE
Q psy16743 6 SFQHYVQLTRLQMQTKV-----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYL 80 (114)
Q Consensus 6 ~~Q~~~l~~R~~~~~~~-----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL 80 (114)
+.-+.|+++|.++..+. .++.+||+|| |+++..+|+. ...+.+.+++..+.+.+ .. +.||++|||
T Consensus 62 ~~~llf~a~R~~~~~~~I~p~l~~G~~VI~DR------y~~S~~Ayq~-~~~g~~~~~i~~l~~~~--~~-~~PDl~i~L 131 (209)
T PRK13976 62 SELLLFIAMRREHFVKVILPALLQGKIVICDR------FIDSTIAYQG-YGCGVDLSLIRDLNDLV--VD-KYPDITFVL 131 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC------CcCHHHHhcc-ccCCCCHHHHHHHHHHh--hC-CCCCEEEEE
Confidence 33467889999987653 2466889999 5555556653 22334445555555443 23 789999999
Q ss_pred ecCHHHHHHHHHhcCCccccCCcHHHHHHHHh
Q psy16743 81 RSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 81 ~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
++||+++++|+++|+ .| ..+.+|++++.+
T Consensus 132 dv~~e~a~~Ri~~~~--~e-~~~~~~l~~v~~ 160 (209)
T PRK13976 132 DIDIELSLSRADKNG--YE-FMDLEFYDKVRK 160 (209)
T ss_pred eCCHHHHHHHhcccc--hh-cccHHHHHHHHH
Confidence 999999999997543 45 356899988875
No 12
>PHA03134 thymidine kinase; Provisional
Probab=99.28 E-value=1.4e-11 Score=93.25 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=67.9
Q ss_pred CcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc-cCC-CEEEEEecCHHHHHHHHHhcCCccccCCc
Q psy16743 26 KVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMD-IGL-DLIVYLRSCPKTVHERMLKRNRPEENCVP 103 (114)
Q Consensus 26 ~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~-~~p-dl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~ 103 (114)
..+|+||+++|...||..+.|..|.++..++ ..+...+. ..| |.+||++.+++++++||++|||+.|. ++
T Consensus 121 ~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~-------~~l~~~~p~~~pG~niVl~~l~~~e~~~Rl~~R~R~gE~-id 192 (340)
T PHA03134 121 VTLVFDRHPVASCVCFPLARYLLGDMSACAL-------LALAATLPREPPGGNLVVTTLNPDEHLRRLRARARIGEQ-ID 192 (340)
T ss_pred eeeeeccCCCCccccchHHHHhcCCCCHHHH-------HHHHHhCCCCCCCCeEEEEeCCHHHHHHHHHHcCCCccc-cC
Confidence 3689999999999999999999999998776 22333441 125 89999999999999999999999997 99
Q ss_pred HHHHHHHHhc
Q psy16743 104 LDYLQSLHES 113 (114)
Q Consensus 104 ~~Yl~~l~~~ 113 (114)
.+||..|+..
T Consensus 193 ~~yL~~l~n~ 202 (340)
T PHA03134 193 AKLIAALRNV 202 (340)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 13
>PLN02924 thymidylate kinase
Probab=99.27 E-value=4.2e-11 Score=86.25 Aligned_cols=91 Identities=19% Similarity=0.315 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhhh----cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEe
Q psy16743 6 SFQHYVQLTRLQMQTKVT----DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLR 81 (114)
Q Consensus 6 ~~Q~~~l~~R~~~~~~~~----~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~ 81 (114)
+.-+.|.++|+++..... ++.+||+||.++|+ ++|.. ..| . +. +|...+...+ |.||++|||+
T Consensus 77 ~~~llf~adR~~~~~~I~pal~~g~vVI~DRy~~S~-~ayq~---~~g--~--~~----~~~~~~~~~~-~~PDlvi~Ld 143 (220)
T PLN02924 77 AIHLLFSANRWEKRSLMERKLKSGTTLVVDRYSYSG-VAFSA---AKG--L--DL----EWCKAPEVGL-PAPDLVLYLD 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEccchhHH-HHHHH---hcC--C--CH----HHHHHHHhCC-CCCCEEEEEe
Confidence 344778889988864442 46689999966555 34432 123 1 12 2445555666 8999999999
Q ss_pred cCHHHHHHHHHhcCCccccCCcHHHHHHHHh
Q psy16743 82 SCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 82 ~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
+||+++++|+.++++..| ..+|++++.+
T Consensus 144 ~~~~~a~~R~~~~~~~~E---~~~~~~rv~~ 171 (220)
T PLN02924 144 ISPEEAAERGGYGGERYE---KLEFQKKVAK 171 (220)
T ss_pred CCHHHHHHHhccCccccc---cHHHHHHHHH
Confidence 999999999876555555 3789888765
No 14
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.26 E-value=4.8e-11 Score=83.58 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhh-----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEe
Q psy16743 7 FQHYVQLTRLQMQTKV-----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLR 81 (114)
Q Consensus 7 ~Q~~~l~~R~~~~~~~-----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~ 81 (114)
..+.++.+|+.++.+. ..+.++|+||+++|+ ++| +...+ +.+.+.+..+...+. .. +.||++|||+
T Consensus 65 ~~~~~~~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~-~~~-----~~~~~-~~~~~~~~~l~~~~~-~~-~~pd~~i~l~ 135 (205)
T PRK00698 65 ELLLFYAARAQHLEEVIKPALARGKWVISDRFIDSS-LAY-----QGGGR-GLDIDLLLALNDFAL-GG-FRPDLTLYLD 135 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHH-HHH-----CCCCC-CCCHHHHHHHHHHHh-CC-CCCCEEEEEe
Confidence 3455678888887654 235578999966666 454 33221 112333444433332 22 6799999999
Q ss_pred cCHHHHHHHHHhcCCcccc-CCcHHHHHHHHh
Q psy16743 82 SCPKTVHERMLKRNRPEEN-CVPLDYLQSLHE 112 (114)
Q Consensus 82 ~~pe~~~~Ri~~Rgr~~E~-~i~~~Yl~~l~~ 112 (114)
+||+++++|+.+|+...+. ..+.+|++++++
T Consensus 136 ~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~ 167 (205)
T PRK00698 136 VPPEVGLARIRARGELDRIEQEGLDFFERVRE 167 (205)
T ss_pred CCHHHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 9999999999999843211 235788887764
No 15
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=2e-11 Score=87.36 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhhh-----cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEe
Q psy16743 7 FQHYVQLTRLQMQTKVT-----DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLR 81 (114)
Q Consensus 7 ~Q~~~l~~R~~~~~~~~-----~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~ 81 (114)
.=+.|+++|..+..+.. .+.+||+|| |++++.+|+.+ -...+++...++.+.... .+.||++||||
T Consensus 65 e~lLfaadR~~h~~~~i~pal~~g~vVI~DR------y~~Ss~AYQg~-~~~~~~~~~~~l~~~~~~--~~~PD~ti~Ld 135 (208)
T COG0125 65 EALLFAADRAQHLEEVIKPALKEGKVVICDR------YVDSSLAYQGG-GRGLDLDWVLALNEFAPG--GLKPDLTLYLD 135 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCEEEECC------cccHHHHhhhh-ccCCCHHHHHHHHHhccC--CCCCCEEEEEe
Confidence 34567788988766652 355788888 88888888842 133334444444433322 25999999999
Q ss_pred cCHHHHHHHHHhcCCc---cccCCcHHHHHHHH
Q psy16743 82 SCPKTVHERMLKRNRP---EENCVPLDYLQSLH 111 (114)
Q Consensus 82 ~~pe~~~~Ri~~Rgr~---~E~~i~~~Yl~~l~ 111 (114)
+||+++++|+.+|+.. +|. ...++++++.
T Consensus 136 v~~e~al~R~~~r~~~~~r~E~-~~~~f~~kvr 167 (208)
T COG0125 136 VPPEVALERIRKRGELRDRFEK-EDDEFLEKVR 167 (208)
T ss_pred CCHHHHHHHHHhcCCccchhhh-HHHHHHHHHH
Confidence 9999999999999664 332 2224555543
No 16
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.26 E-value=3.4e-11 Score=83.76 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhh-----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEE
Q psy16743 6 SFQHYVQLTRLQMQTKV-----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYL 80 (114)
Q Consensus 6 ~~Q~~~l~~R~~~~~~~-----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL 80 (114)
...+.|+++|..+..+. ..+.++|+|| |+++..+|+.... +.+.+....+...+.. +.||++|||
T Consensus 56 ~~~~l~~a~r~~~~~~~I~~~l~~g~~VI~DR------y~~S~lay~~~~~-~~~~~~~~~~~~~~~~---~~PDl~~~L 125 (186)
T PF02223_consen 56 AEALLFAADRAWHLARVIRPALKRGKIVICDR------YIYSTLAYQGAKG-ELDIDWIWRLNKDIFL---PKPDLTFFL 125 (186)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTSEEEEES------EHHHHHHHHTTTT-SSTHHHHHHHHHHHHT---TE-SEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEec------hhHHHHHhCcccc-CCcchhhhHHHHHhcC---CCCCEEEEE
Confidence 56778888986665433 2467899999 5555555654311 1122323333332211 289999999
Q ss_pred ecCHHHHHHHHHhcCC-ccccCCcHHHHHHHHh
Q psy16743 81 RSCPKTVHERMLKRNR-PEENCVPLDYLQSLHE 112 (114)
Q Consensus 81 ~~~pe~~~~Ri~~Rgr-~~E~~i~~~Yl~~l~~ 112 (114)
++||+++++|+.+|+. ..+..-..+|++++++
T Consensus 126 dv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 158 (186)
T PF02223_consen 126 DVDPEEALKRIAKRGEKDDEEEEDLEYLRRVRE 158 (186)
T ss_dssp ECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHcCCccchHHHHHHHHHHHHHH
Confidence 9999999999999998 2222344778877764
No 17
>PRK13974 thymidylate kinase; Provisional
Probab=99.18 E-value=2.2e-10 Score=81.72 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHhh-----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEE
Q psy16743 5 FSFQHYVQLTRLQMQTKV-----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVY 79 (114)
Q Consensus 5 ~~~Q~~~l~~R~~~~~~~-----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~Iy 79 (114)
.+..+.|+++|++++.+. ..+.++|+|| |+++..+|+. .....+.+.+..+...+.. . +.||++||
T Consensus 70 ~~~~llf~adr~~~~~~~i~~~l~~g~~Vi~DR------y~~S~~ay~g-~~r~~~~~~~~~l~~~~~~-~-~~pd~~i~ 140 (212)
T PRK13974 70 LAELLLYAADRAQHVSKIIRPALENGDWVISDR------FSGSTLAYQG-YGRGLDLELIKNLESIATQ-G-LSPDLTFF 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcC------chhhHHHHcc-ccCCCCHHHHHHHHHHHhC-C-CCCCEEEE
Confidence 345678889999987653 2355778888 7777777764 2223334444555443322 2 58999999
Q ss_pred EecCHHHHHHHHHhcCCccccCCcHHHHHHHHh
Q psy16743 80 LRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 80 L~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
|++||+++++|+..|+.+.......+|++.+..
T Consensus 141 ld~~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~ 173 (212)
T PRK13974 141 LEISVEESIRRRKNRKPDRIEAEGIEFLERVAE 173 (212)
T ss_pred EeCCHHHHHHHHHhcccCchhhhhHHHHHHHHH
Confidence 999999999999988654222234577766543
No 18
>PHA03135 thymidine kinase; Provisional
Probab=99.13 E-value=8.3e-11 Score=89.17 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=75.0
Q ss_pred CccchHHHH--HHHHHHHHHHHhhh--cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCE
Q psy16743 1 MRWNFSFQH--YVQLTRLQMQTKVT--DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDL 76 (114)
Q Consensus 1 ~r~~~~~Q~--~~l~~R~~~~~~~~--~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl 76 (114)
+++|.||++ ..+.+.+.+..... .+..+|+||+++|..-||--+.|..|.++- +.+..++..+.... +..++
T Consensus 87 ~kfatP~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls~---~~l~sl~~~lp~~~-pG~ni 162 (343)
T PHA03135 87 AKFADPYLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDCSL---EMLISSIIRLPLEP-PGCNL 162 (343)
T ss_pred HHhcchHHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCCCH---HHHHHHHHhCCcCC-CCCeE
Confidence 367777777 22222222222211 134679999999999999977777777764 44455555544333 44567
Q ss_pred EEEEecCHHHHHHHHHhcCCccccCCcHHHHHHHHhc
Q psy16743 77 IVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHES 113 (114)
Q Consensus 77 ~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~~ 113 (114)
+|+...+++++++||++|||++|.. +.+||..|+.+
T Consensus 163 Vl~~L~~~~E~~rRl~~R~R~gE~~-d~~yL~aL~n~ 198 (343)
T PHA03135 163 VITILPDEKEHVNRLSSRNRPGETT-DRNMLRALNAV 198 (343)
T ss_pred EEEECCCHHHHHHHHHHcCCCcccc-CHHHHHHHHHH
Confidence 7777767999999999999999985 99999999864
No 19
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.12 E-value=4.5e-10 Score=77.79 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhh-----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEec
Q psy16743 8 QHYVQLTRLQMQTKV-----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRS 82 (114)
Q Consensus 8 Q~~~l~~R~~~~~~~-----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~ 82 (114)
.+.+...|..+..+. ..+.++|+||+++|+ .+|..... + +....+. +...+.... +.||++|||++
T Consensus 64 ~~~~~~~r~~~~~~~~~~~~~~~~~vi~DR~~~s~-~~~~~~~~--~-~~~~~~~----~l~~~~~~~-~~~~~~i~l~~ 134 (200)
T cd01672 64 LLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSS-LAYQGAGR--G-LGEALIE----ALNDLATGG-LKPDLTILLDI 134 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEECCCcchH-HHhCcccc--C-CCHHHHH----HHHHHHhCC-CCCCEEEEEeC
Confidence 444556777665443 246678999977777 56643311 1 2222222 222233344 68999999999
Q ss_pred CHHHHHHHHHhcCCcccc-CCcHHHHHHHHh
Q psy16743 83 CPKTVHERMLKRNRPEEN-CVPLDYLQSLHE 112 (114)
Q Consensus 83 ~pe~~~~Ri~~Rgr~~E~-~i~~~Yl~~l~~ 112 (114)
||+++.+|+.+|++..+. ..+.+|+++++.
T Consensus 135 ~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 165 (200)
T cd01672 135 DPEVGLARIEARGRDDRDEQEGLEFHERVRE 165 (200)
T ss_pred CHHHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 999999999999986554 466788887764
No 20
>PRK13975 thymidylate kinase; Provisional
Probab=99.08 E-value=9.5e-10 Score=76.78 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHhhh---cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEe
Q psy16743 5 FSFQHYVQLTRLQMQTKVT---DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLR 81 (114)
Q Consensus 5 ~~~Q~~~l~~R~~~~~~~~---~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~ 81 (114)
.+.++.|..+|.++..+.. .++++|+||+++|+ ++| +.+.....+ +...+.... +.||++|||+
T Consensus 55 ~~~~~~f~~~r~~~~~~i~~~~~~~~vi~DRy~~S~-~a~-----~~~~g~~~~------~~~~~~~~~-~~pd~vi~L~ 121 (196)
T PRK13975 55 ETLALLFAADRVEHVKEIEEDLKKRDVVCDRYVYSS-IAY-----QSVQGIDED------FIYSINRYA-KKPDLVFLLD 121 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEEEEECchhHH-HHH-----hcccCCCHH------HHHHHHhCC-CCCCEEEEEc
Confidence 5678899999988765442 34567888865555 444 433211212 222333334 7899999999
Q ss_pred cCHHHHHHHHHhcCCccccCCcHHHHHHHHh
Q psy16743 82 SCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 82 ~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
+||+++.+|+.+|+++.- .+.+|++++++
T Consensus 122 ~~~e~~~~Rl~~r~~~~~--~~~~~~~~~~~ 150 (196)
T PRK13975 122 VDIEEALKRMETRDKEIF--EKKEFLKKVQE 150 (196)
T ss_pred CCHHHHHHHHhccCcccc--chHHHHHHHHH
Confidence 999999999999986421 23566666553
No 21
>PRK13973 thymidylate kinase; Provisional
Probab=99.07 E-value=1.9e-09 Score=76.92 Aligned_cols=79 Identities=20% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhh----h-cCCcccccccccccHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhhcccCCCEEEEE
Q psy16743 8 QHYVQLTRLQMQTKV----T-DKKVQLFERSLQNNRFCFVEMARAQG--FLSKQEFLAMSEWYDWVENNMDIGLDLIVYL 80 (114)
Q Consensus 8 Q~~~l~~R~~~~~~~----~-~~~~~i~eRs~~sd~~vF~~~~~~~g--~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL 80 (114)
-+.|.+.|.++..+. . .+.+||+|| |+++..+|+.- .+... ... .++...... +.||++|||
T Consensus 67 ~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DR------y~~S~~ayq~~~~~~~~~---~~~-~l~~~~~~~-~~PD~vi~L 135 (213)
T PRK13973 67 ALLFAAARDDHVEEVIRPALARGKIVLCDR------FIDSTRAYQGVTGNVDPA---LLA-ALERVAING-VMPDLTLIL 135 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcc------hhhhHHHHcccccCCCHH---HHH-HHHHHHhCC-CCCCEEEEE
Confidence 466778888887653 2 356788888 77777777642 22211 111 222222333 789999999
Q ss_pred ecCHHHHHHHHHhcCCc
Q psy16743 81 RSCPKTVHERMLKRNRP 97 (114)
Q Consensus 81 ~~~pe~~~~Ri~~Rgr~ 97 (114)
++||+++++|+.+|++.
T Consensus 136 dv~~e~~~~Rl~~R~~~ 152 (213)
T PRK13973 136 DIPAEVGLERAAKRRGS 152 (213)
T ss_pred eCCHHHHHHHHHhccCC
Confidence 99999999999999754
No 22
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.00 E-value=2.2e-09 Score=74.84 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhh----h-cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccC--CCEEEEE
Q psy16743 8 QHYVQLTRLQMQTKV----T-DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIG--LDLIVYL 80 (114)
Q Consensus 8 Q~~~l~~R~~~~~~~----~-~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~--pdl~IyL 80 (114)
++.|..+|.....+. . .+.++|+||+++|+ ++| +.+ ....+. +|+..+...+ +. ||++|||
T Consensus 67 ~~l~~~~r~~~~~~~i~~~l~~~~~VI~DR~~~s~-~ay-----~~~-~~~~~~----~~~~~l~~~~-~~~~~d~~i~l 134 (195)
T TIGR00041 67 ALLFAADRHEHLEDKIKPALAEGKLVISDRYVFSS-IAY-----QGG-ARGIDE----DLVLELNEDA-LGDMPDLTIYL 134 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccHH-HHH-----ccc-cCCCCH----HHHHHHHHHh-hCCCCCEEEEE
Confidence 556677776665432 1 35578888866666 444 321 111222 2344444444 33 9999999
Q ss_pred ecCHHHHHHHHHhcCCc-cccCCcHHHHHHHHh
Q psy16743 81 RSCPKTVHERMLKRNRP-EENCVPLDYLQSLHE 112 (114)
Q Consensus 81 ~~~pe~~~~Ri~~Rgr~-~E~~i~~~Yl~~l~~ 112 (114)
++||+++++|+.+|++. .|...+.+|++.+++
T Consensus 135 ~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~ 167 (195)
T TIGR00041 135 DIDPEVALERLRKRGELDREEFEKLDFFEKVRQ 167 (195)
T ss_pred eCCHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 99999999999999874 233455788887765
No 23
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=98.76 E-value=1.6e-08 Score=75.10 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=57.9
Q ss_pred cccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCccccCCcH
Q psy16743 27 VQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPL 104 (114)
Q Consensus 27 ~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~ 104 (114)
.+|+||+++|.--||--+.|..|.++-.++ ... ...+ .+..+.+|.++.++++.++||++|||++|. ++.
T Consensus 104 ~~ifDRHplAA~vcFPlary~~G~ls~~~l------i~l-la~~p~~~pG~niVl~~L~~~E~~rRl~~R~R~gE~-vd~ 175 (281)
T PF00693_consen 104 WLIFDRHPLAATVCFPLARYLLGDLSFEDL------ISL-LATFPPEPPGTNIVLMTLPEEEHLRRLKARGRPGER-VDL 175 (281)
T ss_dssp EEEEES-THHHHTHHHHHHHHTTSS-HHHH------HHH-HTTS----TTEEEEEEE--HHHHHHHHHHTSTTT-S---H
T ss_pred EEEEecchhHHHHHHHHHHHHhCCCCHHHH------HHH-HHhCCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc-cCH
Confidence 579999999999999999999999986554 222 2333 145667888999999999999999999996 999
Q ss_pred HHHHHHHhc
Q psy16743 105 DYLQSLHES 113 (114)
Q Consensus 105 ~Yl~~l~~~ 113 (114)
.||..|+.+
T Consensus 176 ~~l~~Lr~~ 184 (281)
T PF00693_consen 176 NYLRALRNV 184 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999853
No 24
>PHA03133 thymidine kinase; Provisional
Probab=98.35 E-value=1.8e-06 Score=66.22 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=65.3
Q ss_pred CcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCccccCCc
Q psy16743 26 KVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEENCVP 103 (114)
Q Consensus 26 ~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~ 103 (114)
..+|+||+++|.--||--+.|..|.|+-..+- .. ...+ .++-|.+|.++.++++.++||++|+|++|. ++
T Consensus 151 ~~lifDRHPlAa~vcFPlary~~G~ls~~~li------sl-la~lp~~~pG~NiVl~~L~~~E~~~RL~~R~R~gE~-~D 222 (368)
T PHA03133 151 LTLVFDRHPVAPLLCYPAARYLMGSLSLPAVL------SF-AALLPPTTPGTNLVLGALPEAAHAERLAQRQRPGER-LD 222 (368)
T ss_pred eEEeecCCcCchhhhhhHHHHHcCCCCHHHHH------HH-HHhCCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc-cC
Confidence 35789999999989999999999999866542 22 2222 156679999999999999999999999997 88
Q ss_pred HHHHHHHHh
Q psy16743 104 LDYLQSLHE 112 (114)
Q Consensus 104 ~~Yl~~l~~ 112 (114)
..||..|+.
T Consensus 223 ~~~l~alrn 231 (368)
T PHA03133 223 LAMLSAIRR 231 (368)
T ss_pred HHHHHHHHH
Confidence 999998875
No 25
>KOG3327|consensus
Probab=98.23 E-value=6e-07 Score=63.28 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhh----hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCH
Q psy16743 9 HYVQLTRLQMQTKV----TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCP 84 (114)
Q Consensus 9 ~~~l~~R~~~~~~~----~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~p 84 (114)
+.|=++|+++.... .++..+|+|| |.|+..+|..-..- ++++..++ ...+ |+||+++||+++|
T Consensus 69 LlFSAnRwe~~~~i~e~l~kg~~~ivDR------Y~~SGvAyS~AKgl--~~dWc~~p----d~gL-~KPDlvlfL~v~p 135 (208)
T KOG3327|consen 69 LLFSANRWEHVSLIKEKLAKGTTLIVDR------YSFSGVAYSAAKGL--DLDWCKQP----DVGL-PKPDLVLFLDVSP 135 (208)
T ss_pred HHhccchhhHHHHHHHHHhcCCeEEEec------ceecchhhhhhcCC--CcchhhCC----ccCC-CCCCeEEEEeCCH
Confidence 45557777775333 3455689999 55555555432212 22222221 3355 9999999999999
Q ss_pred HHHHHHHHhcCCccccCCcHHHHHH
Q psy16743 85 KTVHERMLKRNRPEENCVPLDYLQS 109 (114)
Q Consensus 85 e~~~~Ri~~Rgr~~E~~i~~~Yl~~ 109 (114)
+.+ .|.+.+| .|..-+.+++++
T Consensus 136 ~~~-a~rggfG--~Erye~v~fqek 157 (208)
T KOG3327|consen 136 EDA-ARRGGFG--EERYETVAFQEK 157 (208)
T ss_pred HHH-HHhcCcc--hhHHHHHHHHHH
Confidence 994 4433333 454333444443
No 26
>PRK04040 adenylate kinase; Provisional
Probab=97.28 E-value=0.00046 Score=48.52 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=35.9
Q ss_pred cCCCEEEEEecCHHHHHHHHH---hcCCccccCCcHHHHHHHHh
Q psy16743 72 IGLDLIVYLRSCPKTVHERML---KRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~---~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
..||.+|||++||++.++|+. .|+|+.|+...++|++.++.
T Consensus 109 l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~ 152 (188)
T PRK04040 109 LNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNR 152 (188)
T ss_pred cCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998 48999998888888887764
No 27
>PRK06762 hypothetical protein; Provisional
Probab=97.06 E-value=0.0031 Score=42.73 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHH
Q psy16743 59 MSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSL 110 (114)
Q Consensus 59 y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l 110 (114)
|..++..+.... ..|..+|||++|+++|++|+.+|++.. ..+.+-+++.
T Consensus 82 ~~~~~~~l~~~~-~~~~~~v~Ldap~e~~~~R~~~R~~~~--~~~~~~l~~~ 130 (166)
T PRK06762 82 YGPMLKELIHLF-RGNAYTYYFDLSFEETLRRHSTRPKSH--EFGEDDMRRW 130 (166)
T ss_pred HHHHHHHHHHhc-CCCeEEEEEeCCHHHHHHHHhcccccc--cCCHHHHHHH
Confidence 445555555554 568999999999999999999998632 2334444443
No 28
>PRK14532 adenylate kinase; Provisional
Probab=97.00 E-value=0.003 Score=43.74 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..||++|+|++|++++.+|+.+|+
T Consensus 105 ~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 105 QKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred CCCCEEEEEECCHHHHHHHHHcCc
Confidence 579999999999999999999885
No 29
>PRK02496 adk adenylate kinase; Provisional
Probab=96.94 E-value=0.0041 Score=42.94 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=24.8
Q ss_pred ccCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 71 DIGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 71 ~~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
...||++|+|++|++++.+|+.+|+|.
T Consensus 105 ~~~~~~vi~l~~~~~~~~~Rl~~R~~~ 131 (184)
T PRK02496 105 GQSGERVVNLDVPDDVVVERLLARGRK 131 (184)
T ss_pred CCCCCEEEEEeCCHHHHHHHHhcCCCC
Confidence 357999999999999999999999886
No 30
>PRK13949 shikimate kinase; Provisional
Probab=96.88 E-value=0.0025 Score=43.96 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=27.6
Q ss_pred CCCEEEEEecCHHHHHHHHHh--cCCccccCCc-HHHHHH
Q psy16743 73 GLDLIVYLRSCPKTVHERMLK--RNRPEENCVP-LDYLQS 109 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~--Rgr~~E~~i~-~~Yl~~ 109 (114)
.-+++|||++|++++.+|++. |+|+.+...+ .+|++.
T Consensus 93 ~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~ 132 (169)
T PRK13949 93 ASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDF 132 (169)
T ss_pred hCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHH
Confidence 457999999999999999984 5788765443 344433
No 31
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.87 E-value=0.0047 Score=42.37 Aligned_cols=26 Identities=15% Similarity=0.510 Sum_probs=23.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..||++|||++|++++++|+.+|+..
T Consensus 102 ~~~d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 102 VNFKFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred CCCCEEEEEECCHHHHHHHHhcCCcc
Confidence 47999999999999999999999753
No 32
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.71 E-value=0.0054 Score=42.00 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=23.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..||++|||++|++++.+|+.+|++
T Consensus 105 ~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 105 GPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred CCCCEEEEEECCHHHHHHHHHcccc
Confidence 5799999999999999999999975
No 33
>PRK14531 adenylate kinase; Provisional
Probab=96.70 E-value=0.0043 Score=43.03 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCcc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPE 98 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~ 98 (114)
..||++|+|++|++++.+|+..|+|..
T Consensus 106 ~~~~~vi~l~~~~~~l~~Rl~~R~r~d 132 (183)
T PRK14531 106 QPIEAVVLLELDDAVLIERLLARGRAD 132 (183)
T ss_pred CCCCeEEEEECCHHHHHHHhhcCCCCC
Confidence 568999999999999999999998863
No 34
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0012 Score=46.14 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=28.7
Q ss_pred HhhcccCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 67 ENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 67 ~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
..++-|.||++|-|+++|++..+|+++||-+.|+
T Consensus 76 ~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eK 109 (180)
T COG1936 76 LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEK 109 (180)
T ss_pred hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHH
Confidence 3444245999999999999999999999999875
No 35
>KOG3079|consensus
Probab=96.44 E-value=0.0038 Score=44.19 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=23.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
.|++++|++|+.|+|++|+..||+.
T Consensus 112 ~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 112 DPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CCCEEEEEeCCHHHHHHHHHhhccc
Confidence 6999999999999999999999877
No 36
>PRK14527 adenylate kinase; Provisional
Probab=96.22 E-value=0.012 Score=41.05 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.9
Q ss_pred ccCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 71 DIGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 71 ~~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+..|+.+|+|++|+++|++|+.+|+
T Consensus 109 g~~~~~vi~l~~~~~~~~~Rl~~R~ 133 (191)
T PRK14527 109 GARLLAVVLLEVPDEELIRRIVERA 133 (191)
T ss_pred CCCCCEEEEEECCHHHHHHHHHcCc
Confidence 3679999999999999999999986
No 37
>PRK08118 topology modulation protein; Reviewed
Probab=96.22 E-value=0.0013 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+.+|.+|||++|.++|+.|+.+|+
T Consensus 77 ~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 77 NAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred HhCCEEEEEeCCHHHHHHHHHHHH
Confidence 569999999999999999999984
No 38
>PRK13808 adenylate kinase; Provisional
Probab=96.18 E-value=0.0095 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
..||++|+|++|++++++|+..|
T Consensus 105 i~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 105 LKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred CCcCeEEEEECCHHHHHHHHHcC
Confidence 57999999999999999999987
No 39
>PRK14528 adenylate kinase; Provisional
Probab=96.08 E-value=0.016 Score=40.49 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
..||++|+|++|++++++|+..|
T Consensus 106 ~~~d~vI~Ld~~~~~~~~Rl~~R 128 (186)
T PRK14528 106 KSIDKAINLEVPDGELLKRLLGR 128 (186)
T ss_pred CCCCEEEEEECCHHHHHHHHhcC
Confidence 57999999999999999999988
No 40
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.02 E-value=0.0059 Score=38.96 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=19.3
Q ss_pred EEEecCHHHHHHHHHhcCCcccc
Q psy16743 78 VYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 78 IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
|||+|||+++.+|+.+|++..+.
T Consensus 96 i~L~~~~e~~~~R~~~R~~~~~~ 118 (129)
T PF13238_consen 96 IFLDCSPEELRKRLKKRGRKEEK 118 (129)
T ss_dssp EEEE--HHHHHHHHHCTTTSCHH
T ss_pred EEEECCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999998754
No 41
>PRK06217 hypothetical protein; Validated
Probab=95.59 E-value=0.013 Score=40.49 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=22.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+.+|++|||++|+++|++|+.+|.
T Consensus 82 ~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 82 PLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred hhCCEEEEEECCHHHHHHHHHcCc
Confidence 569999999999999999999885
No 42
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.56 E-value=0.031 Score=38.44 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..|+++|+|++|++++++|+.+|+..
T Consensus 103 ~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 103 IKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred CCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 37999999999999999999999743
No 43
>PRK03839 putative kinase; Provisional
Probab=95.56 E-value=0.019 Score=39.48 Aligned_cols=25 Identities=32% Similarity=0.650 Sum_probs=23.0
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..||++|+|++||+++.+|+.+|+.
T Consensus 78 ~~~~~vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 78 LPVDYVIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred cCCCEEEEEECCHHHHHHHHHHcCC
Confidence 5799999999999999999998874
No 44
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.52 E-value=0.03 Score=36.54 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=25.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
..+-.+|+|++|+++|.+|+.+|++..+.
T Consensus 96 ~~~~~~v~l~~~~~~~~~R~~~R~~~~~~ 124 (143)
T PF13671_consen 96 GYPVRVVYLDAPEETLRERLAQRNREGDK 124 (143)
T ss_dssp TEEEEEEEECHHHHHHHHHHHTTHCCCTT
T ss_pred CCeEEEEEEECCHHHHHHHHHhcCCcccc
Confidence 45789999999999999999999988754
No 45
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.47 E-value=0.077 Score=38.42 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=28.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHHH
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~ 111 (114)
..|..+|||++|+++|.+|..+|++. .+.+.++.+.
T Consensus 94 ~~~~~~I~l~~p~e~~~~Rn~~R~~~----~~~~~i~~l~ 129 (249)
T TIGR03574 94 NKNYIIIYLKAPLDTLLRRNIERGEK----IPNEVIKDMY 129 (249)
T ss_pred CCCEEEEEecCCHHHHHHHHHhCCCC----CCHHHHHHHH
Confidence 56889999999999999999999764 3455555554
No 46
>PLN02200 adenylate kinase family protein
Probab=95.36 E-value=0.019 Score=41.67 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=22.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..||++|+|++|++++++|+.+|+
T Consensus 144 ~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 144 AEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred cCCCEEEEEECCHHHHHHHHHcCc
Confidence 469999999999999999999995
No 47
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.17 E-value=0.059 Score=35.60 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=23.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC-CccccC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN-RPEENC 101 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg-r~~E~~ 101 (114)
....++|||++|++++.+|+.+|+ |+.-..
T Consensus 90 ~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~ 120 (154)
T cd00464 90 LENGIVVWLDASPEELLERLARDKTRPLLQD 120 (154)
T ss_pred HcCCeEEEEeCCHHHHHHHhccCCCCCCCCC
Confidence 346789999999999999999985 554333
No 48
>PRK08356 hypothetical protein; Provisional
Probab=95.16 E-value=0.049 Score=38.06 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCEEEEEecCHHHHHHHHHhcCCccccCC-cHHHHHHH
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNRPEENCV-PLDYLQSL 110 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i-~~~Yl~~l 110 (114)
+..+|||++|++++.+|+.+|++.-+..+ +.+.++++
T Consensus 115 ~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~ 152 (195)
T PRK08356 115 GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF 152 (195)
T ss_pred CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 46899999999999999999987543322 34444444
No 49
>PRK08233 hypothetical protein; Provisional
Probab=95.01 E-value=0.022 Score=38.75 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=22.0
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..+|++|||++|++++++|+.+|+.
T Consensus 96 ~~~d~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 96 QFIDVTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred HHcCEEEEEcCCHHHHHHHHHHHHh
Confidence 3589999999999999999888864
No 50
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.23 Score=34.74 Aligned_cols=62 Identities=29% Similarity=0.362 Sum_probs=41.0
Q ss_pred cccccHHHHHHHHHHcCCCCHHHHHHHHH------------HHHH-----------HHhhc-ccCCCEEEEEecCHHHHH
Q psy16743 33 SLQNNRFCFVEMARAQGFLSKQEFLAMSE------------WYDW-----------VENNM-DIGLDLIVYLRSCPKTVH 88 (114)
Q Consensus 33 s~~sd~~vF~~~~~~~g~~~~~e~~~y~~------------~~~~-----------~~~~~-~~~pdl~IyL~~~pe~~~ 88 (114)
..+|.=++|-.++.+.| |+=.|+..|-+ ..+. +..++ ...+|+-|||.+|+++=.
T Consensus 27 ~~vsaG~iFR~~A~e~g-msl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVlegrLA~Wi~k~~adlkI~L~Apl~vRa 105 (179)
T COG1102 27 KLVSAGTIFREMARERG-MSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLEGRLAGWIVREYADLKIWLKAPLEVRA 105 (179)
T ss_pred ceeeccHHHHHHHHHcC-CCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEhhhhHHHHhccccceEEEEeCcHHHHH
Confidence 34444479999888888 55555544332 1111 11111 146999999999999999
Q ss_pred HHHHhcC
Q psy16743 89 ERMLKRN 95 (114)
Q Consensus 89 ~Ri~~Rg 95 (114)
+||.+|-
T Consensus 106 ~Ria~RE 112 (179)
T COG1102 106 ERIAKRE 112 (179)
T ss_pred HHHHHhc
Confidence 9999995
No 51
>PRK04182 cytidylate kinase; Provisional
Probab=94.56 E-value=0.046 Score=37.01 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
|+++|||++|++++.+|+.+|+.
T Consensus 92 ~~~~V~l~a~~e~~~~Rl~~r~~ 114 (180)
T PRK04182 92 ADLKIWLKAPLEVRAERIAEREG 114 (180)
T ss_pred CCEEEEEECCHHHHHHHHHhccC
Confidence 89999999999999999998863
No 52
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.45 E-value=0.048 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCEEEEEecCHHHHHHHHHhcCCccc
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr~~E 99 (114)
.-.+|||++|++++.+|+.+|++..+
T Consensus 111 ~~~~i~l~~~~~~~~~Rl~~R~~~~~ 136 (179)
T TIGR02322 111 NLLVVNITASPDVLAQRLAARGRESR 136 (179)
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCCH
Confidence 45899999999999999999988643
No 53
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.40 E-value=0.059 Score=36.22 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..||++|||++|++++.+|+.+|+.
T Consensus 90 ~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 90 EYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred CCcCEEEEEECCHHHHHHHHHHccC
Confidence 3589999999999999999999864
No 54
>PRK14530 adenylate kinase; Provisional
Probab=94.30 E-value=0.051 Score=38.52 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=22.0
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..||++|+|++|++++++|+.+|.
T Consensus 104 ~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 104 TDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred cCCCEEEEEeCCHHHHHHHHhCCC
Confidence 359999999999999999999885
No 55
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.26 E-value=0.12 Score=35.82 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCccc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E 99 (114)
+.+-.+|||++|+++..+|+.+|++..+
T Consensus 109 ~~~~~vi~l~~s~e~l~~RL~~R~~~~~ 136 (186)
T PRK10078 109 QSALLPVCLQVSPEILRQRLENRGRENA 136 (186)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHhCCCCH
Confidence 5667789999999999999999987643
No 56
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.20 E-value=0.094 Score=34.19 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
+..|++|+|++||++..+|+.+|
T Consensus 81 ~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 81 PDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred CCCCEEEEEECCHHHHHHHHHHH
Confidence 44689999999999999999985
No 57
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.14 E-value=0.088 Score=37.17 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
.||++|+|++|.+++++|+..|+
T Consensus 103 ~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 103 KIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred CCCEEEEEECCHHHHHHHHHCCC
Confidence 69999999999999999999985
No 58
>PRK06761 hypothetical protein; Provisional
Probab=94.05 E-value=0.54 Score=35.28 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=54.7
Q ss_pred HHHHHHHHHhh--hcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecC-HHHHH
Q psy16743 12 QLTRLQMQTKV--TDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSC-PKTVH 88 (114)
Q Consensus 12 l~~R~~~~~~~--~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~-pe~~~ 88 (114)
+..|..++.++ ..+++.++|=|.+... ++.-+.+. | +++++...|-+-...+++.+ --++|||+.+ ++.|+
T Consensus 124 ~~~rw~~f~~a~l~~dq~~ifE~s~~~~p-l~~lm~~~-~-~~~~~i~~y~~~l~~~i~~l---~p~l~yl~~~dv~~~~ 197 (282)
T PRK06761 124 ITDRWNDFAEIALEENKVYIFECCFIQNP-VTILMIKY-G-AQKEKITNYVMKLAKIIENL---NPMLFYLEQDDVEFSF 197 (282)
T ss_pred HHHHHHHHHHHhhccCceEEEeccCcCCc-HHHHHHHc-C-CCHHHHHHHHHHHHHHHhcc---CcEEEEecccCHHHHH
Confidence 34555555554 3577899999988883 55444332 2 46666666655555555544 3499999998 99999
Q ss_pred HH-HHhcCCccccC
Q psy16743 89 ER-MLKRNRPEENC 101 (114)
Q Consensus 89 ~R-i~~Rgr~~E~~ 101 (114)
++ +..||......
T Consensus 198 ~~~~~eR~~~W~~~ 211 (282)
T PRK06761 198 RKALKERNPEWSTG 211 (282)
T ss_pred HHHHHhcchHHHHH
Confidence 99 45576555543
No 59
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.36 Score=35.30 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=28.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHHHh
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
..|-.+|||.+|+++|++|=..||.+ +|.+=|+.|.+
T Consensus 100 ~tt~ciIyl~~plDtc~rrN~ergep----ip~Evl~qly~ 136 (261)
T COG4088 100 KTTWCIIYLRTPLDTCLRRNRERGEP----IPEEVLRQLYD 136 (261)
T ss_pred CCceEEEEEccCHHHHHHhhccCCCC----CCHHHHHHHHH
Confidence 68999999999999999887666655 45566665543
No 60
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=93.58 E-value=0.81 Score=33.38 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=50.0
Q ss_pred cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 24 DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 24 ~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
.+++.|++||-+++. ...-+ .|.+++.++....+-...+...+ +...=+-+||.+|.++-.+|+++|-.+.+.
T Consensus 88 ~G~i~IF~rSwY~~~--lv~rv--~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k 162 (230)
T TIGR03707 88 AGEIVLFDRSWYNRA--GVERV--MGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLK 162 (230)
T ss_pred CCeEEEEeCchhhhH--HHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcc
Confidence 477899999999993 33322 38888888754433222222222 245568899999999999999998655544
No 61
>PRK00625 shikimate kinase; Provisional
Probab=93.55 E-value=0.17 Score=35.08 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
....+|||++|++++.+|+.+|+..
T Consensus 95 ~~~~Vv~L~~~~e~l~~Rl~~R~~~ 119 (173)
T PRK00625 95 NRGLLVLLSLPIATIYQRLQKRGLP 119 (173)
T ss_pred cCCEEEEEECCHHHHHHHHhcCCCC
Confidence 3468999999999999999998765
No 62
>PLN02842 nucleotide kinase
Probab=93.42 E-value=0.15 Score=41.26 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=22.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+.||++|+|++|++++++|+.+|.
T Consensus 99 ~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 99 IRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred CCCCEEEEEeCCHHHHHHHHhccc
Confidence 689999999999999999998874
No 63
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=93.20 E-value=0.11 Score=36.80 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCCEEEEEecCHHHHHHHHHhc-CCc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKR-NRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~R-gr~ 97 (114)
.+|.+|++++|+++.++|+.+| |.+
T Consensus 125 ~~D~vi~V~a~~e~ri~Rl~~R~g~s 150 (200)
T PRK14734 125 KMDLVVVVDVDVEERVRRLVEKRGLD 150 (200)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCCCC
Confidence 6799999999999999999887 443
No 64
>PRK01184 hypothetical protein; Provisional
Probab=93.08 E-value=0.44 Score=32.66 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
+.+..+|++++|++++.+|+.+|+++
T Consensus 102 ~~~~~~i~v~~~~~~~~~Rl~~R~~~ 127 (184)
T PRK01184 102 PEDFILIAIHAPPEVRFERLKKRGRS 127 (184)
T ss_pred CcccEEEEEECCHHHHHHHHHHcCCC
Confidence 34779999999999999999999875
No 65
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.99 E-value=0.095 Score=36.93 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..-|+.|||++|++++++|..+|+
T Consensus 129 ~l~D~~Ifvd~~~d~~~~Rr~~R~ 152 (187)
T cd02024 129 DLFDIRYFLRVPYETCKRRREART 152 (187)
T ss_pred hhcCceeEecCCHHHHHHHHHHcC
Confidence 357899999999999999999985
No 66
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.88 E-value=0.26 Score=34.90 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..|+.+|+|++|.+++++|+..|.
T Consensus 105 ~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 105 IKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred CCCCEEEEEECCHHHHHHHHhCCc
Confidence 479999999999999999999985
No 67
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=92.78 E-value=0.15 Score=36.18 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
.+|.+|++.+|+++..+|+.+|++.
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~~~ 157 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRGMG 157 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCCC
Confidence 4599999999999999999999875
No 68
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.70 E-value=0.14 Score=35.26 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.8
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
.-+.+|||++|+++|.+|+..++
T Consensus 96 ~~~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 96 ARGVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred hCCEEEEEeCCHHHHHHHHhCCC
Confidence 45689999999999999998653
No 69
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.69 E-value=0.32 Score=37.46 Aligned_cols=26 Identities=15% Similarity=-0.041 Sum_probs=23.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..+-.+||+++|+++|++|..+|+++
T Consensus 153 ~~~~~~V~ld~ple~~l~RN~~R~~~ 178 (340)
T TIGR03575 153 SLGFCQLFLDCPVESCLLRNKQRPVP 178 (340)
T ss_pred CCCEEEEEEeCCHHHHHHHHhcCCCC
Confidence 46679999999999999999999754
No 70
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=92.59 E-value=0.51 Score=35.12 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=48.7
Q ss_pred cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 24 DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 24 ~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
.|++.|++||-+++ +...-+ .|.+++.++.....-...+...+ +...=+-++|+++.++-.+|+++|-.....
T Consensus 113 ~G~i~IF~RSWY~~--vl~~rv--~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k 187 (264)
T TIGR03709 113 RGEIGIFNRSHYED--VLVVRV--HGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTK 187 (264)
T ss_pred CCeEEEEcCccccc--hhhhhh--cCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcc
Confidence 47789999999999 333322 38888888754433222222222 244557899999999999999998544433
No 71
>PRK14529 adenylate kinase; Provisional
Probab=92.41 E-value=0.32 Score=35.22 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
..||.+|+|++|-+++++|+..|
T Consensus 104 ~~~~~vi~l~~~~~~l~~Rl~~R 126 (223)
T PRK14529 104 MKLDYVIEILLPREVAKNRIMGR 126 (223)
T ss_pred CCCCEEEEEECCHHHHHHHhhCC
Confidence 57999999999999999999988
No 72
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=92.36 E-value=0.18 Score=35.29 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
...|.+|++++|+++..+|+.+|++
T Consensus 123 ~~~D~vi~V~a~~e~~~~Rl~~R~~ 147 (194)
T PRK00081 123 KLVDRVLVVDAPPETQLERLMARDG 147 (194)
T ss_pred hhCCeEEEEECCHHHHHHHHHHcCC
Confidence 4579999999999999999999865
No 73
>PRK13946 shikimate kinase; Provisional
Probab=92.34 E-value=0.34 Score=33.51 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=25.4
Q ss_pred CEEEEEecCHHHHHHHHHhcCC-cccc-CCcHHHHHHHH
Q psy16743 75 DLIVYLRSCPKTVHERMLKRNR-PEEN-CVPLDYLQSLH 111 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~Rgr-~~E~-~i~~~Yl~~l~ 111 (114)
.++|||++|++++.+|+.+|+. +.-. ..+.+.++.+.
T Consensus 104 ~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~ 142 (184)
T PRK13946 104 GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLM 142 (184)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHH
Confidence 4789999999999999998853 3211 22345555543
No 74
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=92.30 E-value=0.38 Score=35.01 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=45.5
Q ss_pred cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCccc
Q psy16743 24 DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 24 ~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E 99 (114)
.|++.|++||-+++- +... ..|.+++.+++...+-...+...+ +...=+-|+|..+.++-.+|+++|-...+
T Consensus 88 ~G~I~if~rSWY~~~--l~~r--v~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~ 161 (228)
T PF03976_consen 88 RGQIGIFDRSWYEDV--LVER--VEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPL 161 (228)
T ss_dssp TT-EEEEES-GGGGG--THHH--HTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCC
T ss_pred CCEEEEEecchhhHH--HHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcc
Confidence 477899999999993 3332 257888888765444333333322 13444778999999999999999854433
No 75
>PLN02674 adenylate kinase
Probab=92.28 E-value=0.31 Score=35.77 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=21.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
..||++|+|++|.+++++|+..|
T Consensus 136 ~~~d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 136 AKIDKVLNFAIDDAILEERITGR 158 (244)
T ss_pred CCCCEEEEEECCHHHHHHHHhcc
Confidence 57999999999999999999988
No 76
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.28 E-value=0.17 Score=33.95 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCE-EEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDL-IVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl-~IyL~~~pe~~~~Ri~~Rgr 96 (114)
|++ +|||++|+++|.+|+.+|+.
T Consensus 93 ~~~~~i~l~~~~e~~~~R~~~R~~ 116 (163)
T TIGR01313 93 PNLHFIYLSGDKDVILERMKARKG 116 (163)
T ss_pred CCEEEEEEeCCHHHHHHHHHhccC
Confidence 444 69999999999999999974
No 77
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.95 E-value=0.18 Score=34.15 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=20.5
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
.++++|||++||+++.+|+.+|.
T Consensus 93 ~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 93 NNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred hCCEEEEEECCHHHHHHHHcccc
Confidence 46799999999999999998874
No 78
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.93 E-value=0.98 Score=30.32 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCH
Q psy16743 5 FSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCP 84 (114)
Q Consensus 5 ~~~Q~~~l~~R~~~~~~~~~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~p 84 (114)
..+|..++..+.+....+...+++|+||+++.. .+|+.... |. .+.++ .+ ... . ..-|++|+|...+
T Consensus 53 ~~~~~~~l~~~~~~~~~~~~~~~vi~Dr~~~d~-~aY~~~~~--~~-~~~~l------~~-~~~-~-~~yd~v~~l~~~~ 119 (163)
T PF13521_consen 53 LAFQEGILEQQLEAEASAKSSDVVICDRGPLDT-LAYSEFYF--GD-YPEEL------ER-EAR-L-SRYDLVFLLPPDP 119 (163)
T ss_dssp HHHHHH--HHHHHHHHHHH-SSEEEESS-HHHH-HHHHHHHH--S----HHH------HH-HHH-H-S--SEEEEEE---
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEeCChHHH-HHHHHHhc--Cc-chHHH------HH-HHH-h-CCCCEEEEeCCcc
Confidence 456777776667776666668889999999999 58876543 21 12221 11 111 2 4679999999877
Q ss_pred HH
Q psy16743 85 KT 86 (114)
Q Consensus 85 e~ 86 (114)
..
T Consensus 120 ~~ 121 (163)
T PF13521_consen 120 PW 121 (163)
T ss_dssp --
T ss_pred cc
Confidence 44
No 79
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.78 E-value=0.29 Score=33.86 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..|-.+|+|++|++++.+|+.+|...
T Consensus 97 ~~~~~~v~l~a~~~~l~~Rl~~R~~~ 122 (176)
T PRK09825 97 SPNVHFLWLDGDYETILARMQRRAGH 122 (176)
T ss_pred CCCEEEEEEeCCHHHHHHHHhcccCC
Confidence 45679999999999999999999753
No 80
>PRK06547 hypothetical protein; Provisional
Probab=91.71 E-value=0.22 Score=34.48 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEecCHHHHHHHHHhcCC
Q psy16743 76 LIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rgr 96 (114)
+.|||++|++++.+|+.+|..
T Consensus 120 ~~I~ld~~~~vr~~R~~~Rd~ 140 (172)
T PRK06547 120 LTVWLDGPEALRKERALARDP 140 (172)
T ss_pred EEEEEECCHHHHHHHHHhcCc
Confidence 899999999999999999963
No 81
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=91.64 E-value=1.6 Score=35.38 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=49.5
Q ss_pred cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 24 DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 24 ~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
.|.+.|++||-+++- ...-+ .|.+++.++.....-...+...+ +...=+-+||++|.++-.+|+.+|-...+.
T Consensus 97 ~G~I~IFdRSWY~~v--lverv--~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k 171 (493)
T TIGR03708 97 KGKIGIFFGSWYTRP--LIERL--EGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPET 171 (493)
T ss_pred CCeEEEEcCcccchh--hHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcc
Confidence 477899999999993 33322 38888888754433222222222 244557899999999999999998655544
No 82
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=91.54 E-value=0.73 Score=34.30 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=47.7
Q ss_pred cCCcccccccccccHHHHHHHHHHcCCCCHHHHHHHHHH---HHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 24 DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEW---YDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 24 ~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~y~~~---~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
.+.++|+|||-+..--| . .-+|.+++.++.-+..- |+.++.+- ...=+-++|.+++|+-++|...|-...+.
T Consensus 131 ~GeiviFdRSwYnr~gV--e--RVmGfct~~q~~rfl~eip~FE~mL~~~-Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K 205 (270)
T COG2326 131 AGEIVIFDRSWYNRAGV--E--RVMGFCTPKQYKRFLREIPEFERMLVES-GIILVKFWLSISREEQLERFLERRNDPLK 205 (270)
T ss_pred CCeEEEechhhccccCe--e--eccccCCHHHHHHHHHHhhHHHHHHHhC-CeEEEEEEEeCCHHHHHHHHHHHhcCHHh
Confidence 46689999999988311 1 12488888876443332 23333322 33446689999999999999998766554
No 83
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=91.53 E-value=0.25 Score=34.93 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.6
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
.-|.+|++++|+++.++|+.+|+.
T Consensus 121 ~~D~vi~V~a~~e~r~~RL~~R~g 144 (196)
T PRK14732 121 LCDATVTVDSDPEESILRTISRDG 144 (196)
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC
Confidence 458999999999999999999954
No 84
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.51 E-value=0.31 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHh
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~ 93 (114)
..|+.+|+|++|.+++.+|+.+
T Consensus 101 ~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 101 IPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SEESEEEEEE--HHHHHHHHHT
T ss_pred cchheeeccccchhhhhhhccc
Confidence 6899999999999999999987
No 85
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=91.24 E-value=0.55 Score=31.95 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..|=..|||++|++++.+|+.+|...
T Consensus 89 ~~~~~~v~l~a~~~~l~~Rl~~R~~~ 114 (163)
T PRK11545 89 NPNLSFIYLKGDFDVIESRLKARKGH 114 (163)
T ss_pred CCCEEEEEEECCHHHHHHHHHhccCC
Confidence 45668999999999999999999764
No 86
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.10 E-value=0.29 Score=33.49 Aligned_cols=25 Identities=20% Similarity=-0.024 Sum_probs=21.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
.|=..|+|++|+++|.+|+.+|++.
T Consensus 110 ~~~~~v~l~~~~~~l~~R~~~R~~~ 134 (175)
T cd00227 110 LDVLWVGVRCPGEVAEGRETARGDR 134 (175)
T ss_pred CCEEEEEEECCHHHHHHHHHhcCCc
Confidence 4558999999999999999999854
No 87
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.71 E-value=0.58 Score=30.84 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=21.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..+-.+|||++|++++.+|+.+|..
T Consensus 96 ~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 96 NPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred CCCEEEEEEECCHHHHHHHHHhccc
Confidence 3566799999999999999999953
No 88
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=90.68 E-value=0.35 Score=33.32 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEecCHHHHHHHHHhcCCc
Q psy16743 76 LIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..|||+.++++.++|+++|..-
T Consensus 93 ~Fv~L~g~~~~i~~Rm~~R~gH 114 (161)
T COG3265 93 RFVYLDGDFDLILERMKARKGH 114 (161)
T ss_pred EEEEecCCHHHHHHHHHhcccC
Confidence 5789999999999999999765
No 89
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=90.59 E-value=0.49 Score=38.03 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCEEEEEecCHHHHHHHHHhcCCccc
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr~~E 99 (114)
++.+|||++|+++..+|+..|+|+-.
T Consensus 92 ~~~vI~L~as~e~l~~Rl~~~~RPLl 117 (488)
T PRK13951 92 KEKTLFLYAPPEVLMERVTTENRPLL 117 (488)
T ss_pred cCeEEEEECCHHHHHHHhccCCCCCc
Confidence 45799999999999999999998843
No 90
>PRK06696 uridine kinase; Validated
Probab=90.45 E-value=0.29 Score=34.88 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
.-|++||+++|++++.+|+.+|.+
T Consensus 146 ~~d~~i~v~~~~e~~~~R~~~Rd~ 169 (223)
T PRK06696 146 LWDYKIFLDTDFEVSRRRGAKRDT 169 (223)
T ss_pred hCCEEEEEECCHHHHHHHHHHhhh
Confidence 458999999999999999999863
No 91
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=90.44 E-value=0.62 Score=32.17 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
...|.++++++|++++++|+.+|+
T Consensus 122 ~~~D~vv~V~~~~~~~~~Rl~~R~ 145 (188)
T TIGR00152 122 SLCDRVIVVDVSPQLQLERLMQRD 145 (188)
T ss_pred HhCCEEEEEECCHHHHHHHHHHcC
Confidence 346899999999999999999996
No 92
>COG4639 Predicted kinase [General function prediction only]
Probab=90.41 E-value=0.85 Score=31.69 Aligned_cols=42 Identities=10% Similarity=-0.048 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 51 LSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 51 ~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
...++...|.++-.. . .--+.+|++|+|++.|++|.+.|.|.
T Consensus 79 ~rr~~r~~l~~La~~----y-~~~~~~ivfdtp~~~c~aRNk~~~Rq 120 (168)
T COG4639 79 LRREDRRKLIDLAKA----Y-GYKIYAIVFDTPLELCLARNKLRERQ 120 (168)
T ss_pred CCHHHHHHHHHHHHH----h-CCeEEEEEEeCCHHHHHHHhhccchh
Confidence 344555555554332 2 34567899999999999999866655
No 93
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.30 E-value=0.52 Score=33.02 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
...|++|||++|++++++|..+|.
T Consensus 124 ~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 124 DLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred hhhceeEEEeCChhHHHHHHHhhc
Confidence 457899999999999999987775
No 94
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.23 E-value=0.31 Score=34.91 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..|.+|||++|++++++|+.+|+
T Consensus 160 ~~D~vi~v~~~~~~~~~R~~~R~ 182 (229)
T PRK09270 160 LFDFTIFLDAPAEVLRERLVARK 182 (229)
T ss_pred hCCEEEEEECCHHHHHHHHHHHH
Confidence 45899999999999999999983
No 95
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.88 E-value=0.41 Score=33.68 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..|.+|++++|+++.++|+.+|+
T Consensus 125 ~~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 125 LCSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred CCCEEEEEECCHHHHHHHHHHcC
Confidence 45899999999999999999995
No 96
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=89.86 E-value=1.2 Score=35.94 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=51.4
Q ss_pred cCCcccccccccccHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHhhc--ccCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 24 DKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLA-MSEWYDWVENNM--DIGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 24 ~~~~~i~eRs~~sd~~vF~~~~~~~g~~~~~e~~~-y~~~~~~~~~~~--~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
.|.+.|+|||-+.+ |...- -.|.+++.++.. |.++-+ +...+ +...=+-+||++|.++-.+|+.+|-.+.+.
T Consensus 356 ~G~i~iFdRSwY~~--vlver--v~g~~~~~~~~~~~~~I~~-FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k 430 (493)
T TIGR03708 356 RGRITIFDRSWYGR--VLVER--VEGFCSEAEWLRAYGEIND-FEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFK 430 (493)
T ss_pred CCeEEEEcCCccCC--cceee--ecCCCCHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCcc
Confidence 36689999999999 33222 238888888753 333322 22222 244557899999999999999999766554
Q ss_pred --CCcHH
Q psy16743 101 --CVPLD 105 (114)
Q Consensus 101 --~i~~~ 105 (114)
.++.+
T Consensus 431 ~WK~t~~ 437 (493)
T TIGR03708 431 RYKITDE 437 (493)
T ss_pred CCcCCHH
Confidence 35533
No 97
>KOG3347|consensus
Probab=89.78 E-value=0.33 Score=33.65 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCccc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~~E 99 (114)
-.|+++-|+||.++..+|+++||-..+
T Consensus 92 wfdlVvVLr~~~s~LY~RL~sRgY~e~ 118 (176)
T KOG3347|consen 92 WFDLVVVLRTPNSVLYDRLKSRGYSEK 118 (176)
T ss_pred heeEEEEEecCchHHHHHHHHcCCCHH
Confidence 468999999999999999999996643
No 98
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.76 E-value=0.34 Score=33.69 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=19.1
Q ss_pred cCCCEEEEEecCHHHHHHHHH-----hcCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHERML-----KRNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~-----~Rgr~~E~ 100 (114)
...|+.|||++++++++.|.- .||++.|.
T Consensus 125 ~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~ 158 (194)
T PF00485_consen 125 DLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE 158 (194)
T ss_dssp GG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred ccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence 346899999999999988743 45776554
No 99
>PRK05541 adenylylsulfate kinase; Provisional
Probab=89.59 E-value=0.58 Score=31.84 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHh
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~ 93 (114)
..|.++|||++|++++.+|+.+
T Consensus 100 ~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 100 LPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred cCCeEEEEEeCCHHHHHHhchh
Confidence 4577999999999999999864
No 100
>PLN02422 dephospho-CoA kinase
Probab=89.03 E-value=0.53 Score=34.35 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
.-|.+|++++|+++..+|+.+|++
T Consensus 125 ~~D~vI~V~a~~e~ri~RL~~R~g 148 (232)
T PLN02422 125 WTKPVVVVWVDPETQLERLMARDG 148 (232)
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC
Confidence 458999999999999999999964
No 101
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.97 E-value=0.57 Score=33.09 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=20.3
Q ss_pred CCCEEEEEecCHH--HHHHHHHhcCCc
Q psy16743 73 GLDLIVYLRSCPK--TVHERMLKRNRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe--~~~~Ri~~Rgr~ 97 (114)
.||+++++.+||+ +..+|+.+|+..
T Consensus 122 ~pd~~~if~~pps~e~l~~Rl~~R~~~ 148 (206)
T PRK14738 122 VPEAVFIFLAPPSMDELTRRLELRRTE 148 (206)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHcCCC
Confidence 5899888888655 779999999864
No 102
>PRK13948 shikimate kinase; Provisional
Probab=88.90 E-value=0.46 Score=33.25 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.5
Q ss_pred CEEEEEecCHHHHHHHHHhcCCcc
Q psy16743 75 DLIVYLRSCPKTVHERMLKRNRPE 98 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~Rgr~~ 98 (114)
..+|||++|++++.+|+..++|+.
T Consensus 104 g~vV~L~~~~e~l~~Rl~~~~RPl 127 (182)
T PRK13948 104 GPVVVLWASPETIYERTRPGDRPL 127 (182)
T ss_pred CeEEEEECCHHHHHHHhcCCCCCC
Confidence 468999999999999997777764
No 103
>PRK13947 shikimate kinase; Provisional
Probab=88.71 E-value=0.53 Score=31.70 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=19.0
Q ss_pred CEEEEEecCHHHHHHHHHhcC
Q psy16743 75 DLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+++|||++|++++.+|+..|+
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCC
Confidence 579999999999999998774
No 104
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.58 E-value=1.1 Score=31.32 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEEecCHHHHHHHHH-hcCCccc
Q psy16743 76 LIVYLRSCPKTVHERML-KRNRPEE 99 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~-~Rgr~~E 99 (114)
.+|||++|+|+.++|++ .++|+.=
T Consensus 97 ~vv~L~~~~e~l~~Rl~~~~~RPll 121 (172)
T COG0703 97 IVVYLDAPFETLYERLQRDRKRPLL 121 (172)
T ss_pred eEEEEeCCHHHHHHHhccccCCCcc
Confidence 89999999999999999 5667743
No 105
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=88.46 E-value=0.63 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
...|.+|++++|+++.++|+.+|+.
T Consensus 120 ~~~D~vv~V~a~~~~ri~Rl~~Rd~ 144 (179)
T cd02022 120 KLVDRVIVVDAPPEIQIERLMKRDG 144 (179)
T ss_pred HhCCeEEEEECCHHHHHHHHHHcCC
Confidence 3468999999999999999999953
No 106
>PRK07667 uridine kinase; Provisional
Probab=87.16 E-value=0.69 Score=32.28 Aligned_cols=25 Identities=20% Similarity=0.176 Sum_probs=21.7
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
.-|.+|++++|+++.++|+.+|+..
T Consensus 138 ~~d~~v~V~~~~~~~~~R~~~r~~~ 162 (193)
T PRK07667 138 FFHYMVYLDCPRETRFLRESEETQK 162 (193)
T ss_pred hceEEEEEECCHHHHHHHHhcccHh
Confidence 3689999999999999999987643
No 107
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=87.13 E-value=0.5 Score=32.45 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCEEEEEecCHHHHHHH----HHhcCCcccc
Q psy16743 74 LDLIVYLRSCPKTVHER----MLKRNRPEEN 100 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~R----i~~Rgr~~E~ 100 (114)
+=+-|||+||.++|.+| +-+|++..|.
T Consensus 100 ~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i 130 (156)
T PF01583_consen 100 RFIEVYVDCPLEVCRKRDPKGLYAKARAGEI 130 (156)
T ss_dssp EEEEEEEES-HHHHHHHTTTSHHHHHHTTSS
T ss_pred ceEEEEeCCCHHHHHHhCchhHHHHhhCCCc
Confidence 34899999999999999 5556655553
No 108
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=87.01 E-value=0.73 Score=31.02 Aligned_cols=22 Identities=32% Similarity=0.683 Sum_probs=17.8
Q ss_pred CEEEEEecCHHHHHHHHHhcCC
Q psy16743 75 DLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..+|||++|++++.+|+..++.
T Consensus 86 g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 86 GLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp SEEEEEE--HHHHHHHHHHHCT
T ss_pred CEEEEEeCCHHHHHHHHhCCCC
Confidence 4799999999999999998765
No 109
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=86.95 E-value=0.63 Score=32.29 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
...|++|||++|++++++|..+|
T Consensus 117 ~~~d~~i~v~~~~~~~~~R~~~R 139 (198)
T cd02023 117 DLMDLKIFVDTDADVRLIRRIER 139 (198)
T ss_pred hhcCeEEEEECChhHHHHHHHHH
Confidence 35789999999999998887654
No 110
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=86.63 E-value=1.1 Score=33.66 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.9
Q ss_pred CCEEEEEecCHHHHHHHHHhcC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+-++|||++|++++.+|+.+|+
T Consensus 227 ~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 227 HCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred CCEEEEEECCHHHHHHHHhcCC
Confidence 4589999999999999999886
No 111
>PRK00131 aroK shikimate kinase; Reviewed
Probab=86.61 E-value=0.86 Score=30.39 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..++|||++|++++.+|+.+|..
T Consensus 97 ~~~~v~l~~~~~~~~~R~~~~~~ 119 (175)
T PRK00131 97 RGTVVYLDASFEELLRRLRRDRN 119 (175)
T ss_pred CCEEEEEECCHHHHHHHhcCCCC
Confidence 45899999999999999998753
No 112
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=86.40 E-value=0.9 Score=32.39 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.6
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
.|.+|++.+||++-++|+.+|+.
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~~ 146 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRDG 146 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcCC
Confidence 68999999999999999999983
No 113
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=86.20 E-value=3.3 Score=30.50 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=18.9
Q ss_pred EEEEecCHHHHHHHHHhcCCc
Q psy16743 77 IVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 77 ~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
+|+|++|+++|.+|+.+||+.
T Consensus 106 ~v~l~~~~e~~~~R~~~R~~~ 126 (300)
T PHA02530 106 EKVFDVPVEELVKRNRKRGER 126 (300)
T ss_pred EEEeCCCHHHHHHHHHccCcC
Confidence 699999999999999999643
No 114
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=85.69 E-value=0.82 Score=32.10 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
...|++|||++|+++++.|..+|
T Consensus 124 ~~~d~~I~v~~~~~~~l~R~~~R 146 (207)
T TIGR00235 124 DLMDLKIFVDTPLDIRLIRRIER 146 (207)
T ss_pred HhCCEEEEEECChhHHHHHHHHH
Confidence 35789999999999999998766
No 115
>PRK07261 topology modulation protein; Provisional
Probab=85.64 E-value=0.86 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
...|.+|+|++|.++|+.|+.+|
T Consensus 77 ~~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 77 QEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred HHCCEEEEEcCCHHHHHHHHHHH
Confidence 45799999999999999999887
No 116
>PTZ00301 uridine kinase; Provisional
Probab=85.45 E-value=0.83 Score=32.67 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.3
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
.-|+.||+++|+++|+.|..+|.
T Consensus 126 l~D~~ifvd~~~d~~~~Rr~~Rd 148 (210)
T PTZ00301 126 EMDCLIFVDTPLDICLIRRAKRD 148 (210)
T ss_pred hCCEEEEEeCChhHHHHHHHhhh
Confidence 46899999999999998876653
No 117
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=84.42 E-value=1.1 Score=32.12 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.3
Q ss_pred CCCEEEEEecCHHHHHHHHHhc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
.-|+.|||++|.+++.+|+.+|
T Consensus 128 ~~D~~ifvd~~~~~~~~rl~~R 149 (220)
T cd02025 128 FFDFSIYVDADEDDIEKWYIKR 149 (220)
T ss_pred hCCeEEEEECCHHHHHHHHHHH
Confidence 4679999999999986655544
No 118
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=84.18 E-value=1.4 Score=32.41 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.0
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
-|.+|++.+|+++..+|+.+|+.
T Consensus 137 ~D~iv~V~a~~e~ri~RL~~R~g 159 (244)
T PTZ00451 137 VSASVVVSCSEERQIERLRKRNG 159 (244)
T ss_pred CCeEEEEECCHHHHHHHHHHcCC
Confidence 59999999999999999999953
No 119
>PLN02459 probable adenylate kinase
Probab=84.04 E-value=1.2 Score=33.05 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..||.+|+|++|.+++++|+..|.
T Consensus 131 ~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 131 TDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred CCCCEEEEEECCHHHHHHHhhccc
Confidence 468999999999999999999884
No 120
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=83.89 E-value=2.7 Score=29.70 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=23.2
Q ss_pred cCCCEEEEEecCHHHHHHHHHh---cCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLK---RNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~---Rgr~~E~ 100 (114)
..||++|.|.++|+..+.|-.+ |.|+.|+
T Consensus 108 l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es 139 (189)
T COG2019 108 LNPDVIVLLEADPEEILERRLRDSRRDRDVES 139 (189)
T ss_pred cCCCEEEEEeCCHHHHHHHHhccccccccccc
Confidence 4799999999999998777543 5677765
No 121
>PTZ00088 adenylate kinase 1; Provisional
Probab=83.40 E-value=1.5 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=22.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..||++|+|++|.+++++|+..|.
T Consensus 108 ~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 108 TNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred CCCCEEEEEeCCHHHHHHHHHcCc
Confidence 479999999999999999999883
No 122
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=83.00 E-value=0.94 Score=31.85 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=22.3
Q ss_pred EEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 76 LIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
++|-|.++|++..+|+..|||....
T Consensus 117 lvv~ita~p~VLaqRL~~RGREs~e 141 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGRESRE 141 (192)
T ss_pred eeEEEecCHHHHHHHHHHhccCCHH
Confidence 7788999999999999999998553
No 123
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=82.65 E-value=1.4 Score=34.38 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCCEEEEEecCHHHHHHHHHh-cCCccc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLK-RNRPEE 99 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~-Rgr~~E 99 (114)
..|.+||+++|+++.++|+.+ ||.+.+
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rRg~s~~ 150 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQRGMAEA 150 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcCCCCHH
Confidence 357899999999999999988 565543
No 124
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=82.26 E-value=1.1 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=22.9
Q ss_pred cCCCEEEEEecCHHHHHHH-----HHhcCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHER-----MLKRNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~R-----i~~Rgr~~E~ 100 (114)
..-|+-||+++|.++|+.| +..|||+.|+
T Consensus 126 ~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~ 159 (218)
T COG0572 126 DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLES 159 (218)
T ss_pred hhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHH
Confidence 3468999999999999776 4456888775
No 125
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=81.66 E-value=2 Score=30.62 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.8
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
.|.+|++.+|+++.++|+.+|+.
T Consensus 129 ~D~vi~V~a~~e~ri~Rl~~Rd~ 151 (204)
T PRK14733 129 LKKVIVIKADLETRIRRLMERDG 151 (204)
T ss_pred CCEEEEEECCHHHHHHHHHHcCC
Confidence 58899999999999999999853
No 126
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=81.21 E-value=1.7 Score=30.30 Aligned_cols=24 Identities=13% Similarity=0.175 Sum_probs=19.6
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..-|.+|++.+|+++.++|+.+|+
T Consensus 121 ~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 121 KLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp GGSSEEEEEE--HHHHHHHHHHHH
T ss_pred hhhceEEEEECCHHHHHHHHHhhC
Confidence 447999999999999999999984
No 127
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=79.45 E-value=6.1 Score=29.71 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHh
Q psy16743 58 AMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 58 ~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~ 93 (114)
.+.+.+..+... ..+-.+|||++|+++..+|+..
T Consensus 72 ~~~~~~~~L~~~--g~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 72 DLPEALDELRER--GIDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred HHHHHHHHHHHc--CCcEEEEEEECCHHHHHHHHhh
Confidence 344555555443 2344679999999999999975
No 128
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=78.38 E-value=6.2 Score=32.26 Aligned_cols=28 Identities=4% Similarity=-0.114 Sum_probs=23.4
Q ss_pred CCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
.|=..||+++|+++|.+|+..|.+..+.
T Consensus 447 v~v~~i~~~~p~e~~~~Rn~~R~~~~~s 474 (526)
T TIGR01663 447 IPCRCFLFNAPLAQAKHNIAFRELSDSA 474 (526)
T ss_pred CeEEEEEeCCCHHHHHHHHHhhccCCcc
Confidence 4557999999999999999999875443
No 129
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=78.34 E-value=1.8 Score=32.49 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=28.3
Q ss_pred cCCCEEEEEecCHHHHHHH-----HHhcCCccccCCcHHHHHHHH
Q psy16743 72 IGLDLIVYLRSCPKTVHER-----MLKRNRPEENCVPLDYLQSLH 111 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~R-----i~~Rgr~~E~~i~~~Yl~~l~ 111 (114)
...|+-||++++.+++.-| +..|||+.|+ +-..|++...
T Consensus 139 ~~~DlkIfVd~~~dlr~irRI~RD~~ERGrs~Es-Vi~qilrrmp 182 (277)
T cd02029 139 QHADLLVGVVPIINLEWIQKIHRDTAERGYSAEA-VMDTILRRMP 182 (277)
T ss_pred HhCCeEEEecCcHHHHHHHHHHhhhHhhCCCHHH-HHHHHHHhCc
Confidence 4579999999999999644 4458999885 4455665543
No 130
>PRK03846 adenylylsulfate kinase; Provisional
Probab=76.36 E-value=5.6 Score=27.67 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=14.0
Q ss_pred EEEEEecCHHHHHHH
Q psy16743 76 LIVYLRSCPKTVHER 90 (114)
Q Consensus 76 l~IyL~~~pe~~~~R 90 (114)
++|||++|++++.+|
T Consensus 124 i~V~L~~~~e~~~~R 138 (198)
T PRK03846 124 IEVFVDTPLAICEAR 138 (198)
T ss_pred EEEEEcCCHHHHHhc
Confidence 479999999999999
No 131
>PLN02199 shikimate kinase
Probab=75.79 E-value=3.4 Score=31.46 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=17.5
Q ss_pred CEEEEEecCHHHHHHHHHh
Q psy16743 75 DLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~ 93 (114)
..+|||++|+++..+||..
T Consensus 196 G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 196 GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred CeEEEEECCHHHHHHHHhh
Confidence 4799999999999999985
No 132
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=75.38 E-value=6.3 Score=32.10 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.9
Q ss_pred cCCCEEEEEecCHHHHHHHHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
|..|+-|||++||++..+|..++
T Consensus 419 P~AdlKIfL~As~evRa~RR~~~ 441 (512)
T PRK13477 419 PDAELKIFLTASVEERARRRALD 441 (512)
T ss_pred CCCCEEEEEECCHHHHHHHHHhh
Confidence 66799999999999999986544
No 133
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=75.25 E-value=6.6 Score=32.03 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=19.2
Q ss_pred CEEEEEecCHHHHHHHHHhc-CCc
Q psy16743 75 DLIVYLRSCPKTVHERMLKR-NRP 97 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~R-gr~ 97 (114)
-.+|||++||+++.+|+..+ +|+
T Consensus 104 g~vv~L~~~~~~l~~Rl~~~~~RP 127 (542)
T PRK14021 104 GRVVYLDADPKEAMERANRGGGRP 127 (542)
T ss_pred CEEEEEECCHHHHHHHHhCCCCCC
Confidence 38999999999999999764 355
No 134
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=73.59 E-value=3.8 Score=30.87 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.9
Q ss_pred CCCEEEEEecCHHHHHHHHHhcC
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..|+.|||++|.+++.+|..+|-
T Consensus 196 ~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 196 FVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred hCCEEEEEECCHHHHHHHHHHHH
Confidence 36899999999999987766663
No 135
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=73.03 E-value=7.5 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=22.5
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~ 100 (114)
+.|..++++..+.+++.+|+.+|++..|.
T Consensus 111 ~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~ 139 (180)
T TIGR03263 111 PDAVSIFILPPSLEELERRLRKRGTDSEE 139 (180)
T ss_pred CCcEEEEEECCCHHHHHHHHHHcCCCCHH
Confidence 45666777778899999999999986543
No 136
>PRK14526 adenylate kinase; Provisional
Probab=72.48 E-value=5.2 Score=28.52 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=18.8
Q ss_pred CEEEEEecCHHHHHHHHHhcC
Q psy16743 75 DLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 75 dl~IyL~~~pe~~~~Ri~~Rg 95 (114)
+.+|+|++|++++++|+..|.
T Consensus 103 ~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 103 IKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred CEEEEEECCHHHHHHHHHCCC
Confidence 578899999999999999884
No 137
>PRK00889 adenylylsulfate kinase; Provisional
Probab=71.49 E-value=3.7 Score=27.77 Aligned_cols=18 Identities=17% Similarity=0.085 Sum_probs=15.7
Q ss_pred CCEEEEEecCHHHHHHHH
Q psy16743 74 LDLIVYLRSCPKTVHERM 91 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri 91 (114)
+=.+|||++|++++.+|.
T Consensus 100 ~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 100 NFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred CeEEEEEcCCHHHHHHhC
Confidence 346899999999999995
No 138
>PLN02348 phosphoribulokinase
Probab=71.16 E-value=4.5 Score=31.91 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=20.5
Q ss_pred cCCCEEEEEecCHHHHHHH-----HHhcCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHER-----MLKRNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~R-----i~~Rgr~~E~ 100 (114)
...|+.|||++|+++.+.| +.+||.+.|.
T Consensus 181 ~l~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~Ee 214 (395)
T PLN02348 181 DLLDFSIYLDISDDVKFAWKIQRDMAERGHSLES 214 (395)
T ss_pred ccCcEEEEEECCHHHHHHHHHHhhHhhcCCCHHH
Confidence 3468999999999998433 3446666553
No 139
>PRK15453 phosphoribulokinase; Provisional
Probab=70.40 E-value=3.5 Score=31.20 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=26.5
Q ss_pred cCCCEEEEEecCHHHHHHH-----HHhcCCccccCCcHHHHHH
Q psy16743 72 IGLDLIVYLRSCPKTVHER-----MLKRNRPEENCVPLDYLQS 109 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~R-----i~~Rgr~~E~~i~~~Yl~~ 109 (114)
...|+-||++++.+++.-| +..|||+.|+ +-..+++.
T Consensus 145 ~~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~Es-Vi~qilrr 186 (290)
T PRK15453 145 QHVDLLIGVVPIVNLEWIQKIHRDTSERGYSREA-VMDTILRR 186 (290)
T ss_pred HhCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHH-HHHHHHHh
Confidence 4578999999999999644 4558999886 33444444
No 140
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=70.36 E-value=3.5 Score=28.44 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=21.9
Q ss_pred CCCEEEEEecCHHH-HH-HHH----HhcCCccccCC
Q psy16743 73 GLDLIVYLRSCPKT-VH-ERM----LKRNRPEENCV 102 (114)
Q Consensus 73 ~pdl~IyL~~~pe~-~~-~Ri----~~Rgr~~E~~i 102 (114)
..|+.||+++|.++ ++ +|| ..||++.|..+
T Consensus 117 ~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i 152 (179)
T cd02028 117 LLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTI 152 (179)
T ss_pred hcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHh
Confidence 37899999999998 54 555 35788777643
No 141
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=69.41 E-value=8.6 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.315 Sum_probs=20.2
Q ss_pred CCEEEEEecCHHHHHHH----HHhcCCccc
Q psy16743 74 LDLIVYLRSCPKTVHER----MLKRNRPEE 99 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~R----i~~Rgr~~E 99 (114)
+=+-||++||.++|.+| +-++.|..|
T Consensus 121 ~FiEVyV~~pl~vce~RDpKGLYkKAr~Ge 150 (197)
T COG0529 121 EFIEVYVDTPLEVCERRDPKGLYKKARAGE 150 (197)
T ss_pred ceEEEEeCCCHHHHHhcCchHHHHHHHcCC
Confidence 45789999999999988 555555555
No 142
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=68.70 E-value=4.6 Score=27.77 Aligned_cols=24 Identities=8% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEe-cCHHHHHHHHHhcCCccc
Q psy16743 76 LIVYLR-SCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 76 l~IyL~-~~pe~~~~Ri~~Rgr~~E 99 (114)
.+||++ .++++..+|+.+||...+
T Consensus 116 ~vIfi~~~s~~~l~~rl~~R~~~~~ 140 (184)
T smart00072 116 IVIFIAPPSSEELERRLRGRGTETA 140 (184)
T ss_pred EEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 899998 677889999999987644
No 143
>PHA00729 NTP-binding motif containing protein
Probab=67.52 E-value=8.6 Score=28.01 Aligned_cols=27 Identities=4% Similarity=0.197 Sum_probs=23.7
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCcc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPE 98 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~ 98 (114)
...++++++.++|+.+.+++++||=..
T Consensus 117 SR~~l~il~~ls~edL~~~Lr~Rg~~~ 143 (226)
T PHA00729 117 TRVSAVIFTTPSPEDLAFYLREKGWYQ 143 (226)
T ss_pred hhCcEEEEecCCHHHHHHHHHhCCCcH
Confidence 368899999999999999999998653
No 144
>PRK14737 gmk guanylate kinase; Provisional
Probab=66.41 E-value=6.1 Score=27.54 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=19.8
Q ss_pred EEEEEecC-HHHHHHHHHhcCCccc
Q psy16743 76 LIVYLRSC-PKTVHERMLKRNRPEE 99 (114)
Q Consensus 76 l~IyL~~~-pe~~~~Ri~~Rgr~~E 99 (114)
++||+.+| +++..+|+.+||...|
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R~~~s~ 142 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHRGTDSE 142 (186)
T ss_pred EEEEEECCCHHHHHHHHHhcCCCCH
Confidence 68999884 7999999999987543
No 145
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=66.27 E-value=8.2 Score=27.61 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=19.8
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
|..++.|||++|+++-.+|..+|.
T Consensus 136 ~~a~~~ifl~a~~~~Ra~Rr~~~~ 159 (217)
T TIGR00017 136 PNAEVKIFLDASVEERAKRRYKQL 159 (217)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHH
Confidence 456699999999999888887764
No 146
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=65.76 E-value=5.6 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.1
Q ss_pred CCCEEEEEecCHHHHHHHHHh
Q psy16743 73 GLDLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~ 93 (114)
.|-..|||++|+++|.+|..+
T Consensus 96 ~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 96 GDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCEEEEEEeCCHHHHHHhCch
Confidence 577899999999999999644
No 147
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=65.03 E-value=36 Score=26.52 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=40.5
Q ss_pred ccccccccHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccC
Q psy16743 30 FERSLQNNRFCFVEMARAQGF--------LSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENC 101 (114)
Q Consensus 30 ~eRs~~sd~~vF~~~~~~~g~--------~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~ 101 (114)
..|++.....-+-+.+++.|. +.+.+-+.+...+..+.... .+-++.+.+|++|+.. .|.+
T Consensus 10 p~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~A-nklg~~vivDvnPsil----------~~l~ 78 (360)
T COG3589 10 PNRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEA-NKLGLRVIVDVNPSIL----------KELN 78 (360)
T ss_pred cCCCcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHH-HhcCcEEEEEcCHHHH----------hhcC
Confidence 345554443444444544441 22333334555566655555 6788999999999987 3345
Q ss_pred CcHHHHHHHHh
Q psy16743 102 VPLDYLQSLHE 112 (114)
Q Consensus 102 i~~~Yl~~l~~ 112 (114)
++.+++..+++
T Consensus 79 ~S~~~l~~f~e 89 (360)
T COG3589 79 ISLDNLSRFQE 89 (360)
T ss_pred CChHHHHHHHH
Confidence 55555555443
No 148
>PRK05439 pantothenate kinase; Provisional
Probab=64.37 E-value=7.8 Score=29.52 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=16.6
Q ss_pred CCEEEEEecCHHHHHHHHHhc
Q psy16743 74 LDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~R 94 (114)
-|+.|||++|.+++.+|..+|
T Consensus 217 ~D~~IfVda~~~~~~~w~i~R 237 (311)
T PRK05439 217 FDFSIYVDADEDLIEKWYIER 237 (311)
T ss_pred CCEEEEEECCHHHHHHHHHHH
Confidence 579999999999987654444
No 149
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=63.58 E-value=8 Score=28.70 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=19.7
Q ss_pred CCCEEEEEecCHHHH----HHHHHh-cCCccc
Q psy16743 73 GLDLIVYLRSCPKTV----HERMLK-RNRPEE 99 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~----~~Ri~~-Rgr~~E 99 (114)
..|+.|||++|+++. ++|..+ ||.+.|
T Consensus 115 ~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e 146 (273)
T cd02026 115 LLDFSVYLDISDEVKFAWKIQRDMAERGHSLE 146 (273)
T ss_pred hccEEEEEECChhHHHHHHHHHHHHHhCCCHH
Confidence 358999999999999 445444 465544
No 150
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=62.57 E-value=18 Score=25.52 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=23.8
Q ss_pred EEEEEec-CHHHHHHHHHhcCCccccCCcH-HHHHHHHh
Q psy16743 76 LIVYLRS-CPKTVHERMLKRNRPEENCVPL-DYLQSLHE 112 (114)
Q Consensus 76 l~IyL~~-~pe~~~~Ri~~Rgr~~E~~i~~-~Yl~~l~~ 112 (114)
.+++|-+ ++++..+|+..|++..=...+. .|++.+..
T Consensus 121 ~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ 159 (197)
T PRK12339 121 RAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPE 159 (197)
T ss_pred EEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHH
Confidence 4566665 6888889999998653223333 36666543
No 151
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=61.37 E-value=18 Score=26.82 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=24.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHHH
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~ 111 (114)
..+-.+||+++|+|+|++|=.+|+.+. .++.+=+..|.
T Consensus 97 ~~~~c~i~~~~~~e~~~~~N~~R~~~~--~~~~e~i~~m~ 134 (270)
T PF08433_consen 97 GTTFCVIYCDCPLETCLQRNSKRPEPE--RYPEETIDDMI 134 (270)
T ss_dssp T-EEEEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHhhhccCCCC--CCCHHHHHHHH
Confidence 678899999999999999998888552 24455555443
No 152
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=58.50 E-value=4.9 Score=25.13 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=16.1
Q ss_pred CCCEEEEEecCHHHHHHHHHhc
Q psy16743 73 GLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
.+|.+|||.+|++++.+|+.+|
T Consensus 89 ~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 89 EFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp HGGCEEEEEEEEHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHH
Confidence 4578999999998666555544
No 153
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=57.73 E-value=20 Score=24.34 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=15.5
Q ss_pred CCEEEEEecCHHHHHHH
Q psy16743 74 LDLIVYLRSCPKTVHER 90 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~R 90 (114)
|-.+|||++|+++|.+|
T Consensus 116 ~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 116 EFIEVFVDCPLEVCEQR 132 (184)
T ss_pred CeEEEEEeCCHHHHHHh
Confidence 55789999999999999
No 154
>PRK07429 phosphoribulokinase; Provisional
Probab=57.53 E-value=12 Score=28.58 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=16.0
Q ss_pred cCCCEEEEEecCHHHHHHH
Q psy16743 72 IGLDLIVYLRSCPKTVHER 90 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~R 90 (114)
...|+.|||++|+++..+|
T Consensus 123 ~~~D~~I~Vda~~evr~~R 141 (327)
T PRK07429 123 ELYDFKVYLDPPEEVKIAW 141 (327)
T ss_pred hhCCEEEEEECCHHHHHHH
Confidence 3478999999999999754
No 155
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=57.31 E-value=11 Score=28.51 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.2
Q ss_pred CCEEEEEecCHHHHHHHHHhc
Q psy16743 74 LDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~R 94 (114)
-|..||+|++.+...+|...|
T Consensus 211 fDfSIyvDa~~~~le~wyi~R 231 (283)
T COG1072 211 FDFSIYVDADEELLEERYIER 231 (283)
T ss_pred ceEEEEecCCHHHHHHHHHHH
Confidence 478999999999999999888
No 156
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=56.26 E-value=12 Score=21.56 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=10.1
Q ss_pred cCCCEEEEEec
Q psy16743 72 IGLDLIVYLRS 82 (114)
Q Consensus 72 ~~pdl~IyL~~ 82 (114)
..+|+.|||++
T Consensus 53 ~~~d~~Iyld~ 63 (69)
T cd02019 53 DLADLKIYLDA 63 (69)
T ss_pred ccccEEEEEEe
Confidence 68999999998
No 157
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=54.32 E-value=24 Score=17.28 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.9
Q ss_pred HHHHHcCCCCHHHHHHHH
Q psy16743 43 EMARAQGFLSKQEFLAMS 60 (114)
Q Consensus 43 ~~~~~~g~~~~~e~~~y~ 60 (114)
+.+++.|.|+++||..-+
T Consensus 9 ~~l~~~G~IseeEy~~~k 26 (31)
T PF09851_consen 9 KELYDKGEISEEEYEQKK 26 (31)
T ss_pred HHHHHcCCCCHHHHHHHH
Confidence 347899999999986443
No 158
>PRK00300 gmk guanylate kinase; Provisional
Probab=52.46 E-value=28 Score=23.89 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=18.2
Q ss_pred EEEEE-ecCHHHHHHHHHhcCCccc
Q psy16743 76 LIVYL-RSCPKTVHERMLKRNRPEE 99 (114)
Q Consensus 76 l~IyL-~~~pe~~~~Ri~~Rgr~~E 99 (114)
.+|++ .++.+++.+|+.+|++..+
T Consensus 118 ~~I~i~~~s~~~l~~Rl~~R~~~~~ 142 (205)
T PRK00300 118 VSIFILPPSLEELERRLRGRGTDSE 142 (205)
T ss_pred EEEEEECcCHHHHHHHHHhcCCCCH
Confidence 44444 5678999999999997654
No 159
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=51.27 E-value=32 Score=24.55 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=21.8
Q ss_pred CCEEEEEecC-HHHHHHHHHhcCCccccCC
Q psy16743 74 LDLIVYLRSC-PKTVHERMLKRNRPEENCV 102 (114)
Q Consensus 74 pdl~IyL~~~-pe~~~~Ri~~Rgr~~E~~i 102 (114)
+-+.||+.+| .+.+.+|+..||.+.|..|
T Consensus 114 ~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I 143 (191)
T COG0194 114 NAVSIFILPPSLEELERRLKGRGTDSEEVI 143 (191)
T ss_pred CeEEEEEcCCCHHHHHHHHHccCCCCHHHH
Confidence 5567777774 7788999999998766544
No 160
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=51.20 E-value=21 Score=22.04 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEE----ecCHHHHHHHHHh
Q psy16743 41 FVEMARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYL----RSCPKTVHERMLK 93 (114)
Q Consensus 41 F~~~~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL----~~~pe~~~~Ri~~ 93 (114)
|.+.+++...-++++.+.+-..|..+..+- -..||++|= +.+|+-.++.|++
T Consensus 18 ~v~~i~~~~~~~ee~~d~lv~hF~~iteHP-~gSDLIfYP~~~~edsPegIv~~vKe 73 (85)
T PF01320_consen 18 FVKEIFNAELKTEEEHDELVDHFEKITEHP-DGSDLIFYPEDGREDSPEGIVKEVKE 73 (85)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHH--T-TTTHHHHS-STTSTSSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCCC-CCCceeeeCCCCCCCCHHHHHHHHHH
Confidence 445555554446677777888888887765 567888884 4679999999876
No 161
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=48.04 E-value=24 Score=23.99 Aligned_cols=23 Identities=13% Similarity=0.595 Sum_probs=18.3
Q ss_pred EEEEEecC-HHHHHHHHHhcCCcc
Q psy16743 76 LIVYLRSC-PKTVHERMLKRNRPE 98 (114)
Q Consensus 76 l~IyL~~~-pe~~~~Ri~~Rgr~~ 98 (114)
.+||+++| +++..+|+++||...
T Consensus 116 ~~IfI~~~s~~~l~~~l~~r~~~~ 139 (183)
T PF00625_consen 116 IVIFIKPPSPEVLKRRLRRRGDES 139 (183)
T ss_dssp EEEEEEESSHHHHHHHHHTTTHCH
T ss_pred eEEEEEccchHHHHHHHhcccccc
Confidence 67888865 899999998888653
No 162
>KOG3078|consensus
Probab=47.07 E-value=28 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.403 Sum_probs=24.0
Q ss_pred HHhhcccCCCEEEEEecCHHHHHHHHHhc
Q psy16743 66 VENNMDIGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 66 ~~~~~~~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
+.... -.||++|-|++|-++..+||-.|
T Consensus 111 l~~~~-~~~d~Vi~l~vp~~~L~~ri~~r 138 (235)
T KOG3078|consen 111 LLDRI-AQIDLVINLKVPEEVLVDRITGR 138 (235)
T ss_pred HHHcc-CCcceEEEecCCHHHHHHHHhcc
Confidence 33444 68999999999999999999988
No 163
>KOG1016|consensus
Probab=45.07 E-value=1.6e+02 Score=26.23 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhhcCCc-ccccccccccHHHHHHHHHH----------------cCCCCHHH----HHHHHHHHHHHH
Q psy16743 9 HYVQLTRLQMQTKVTDKKV-QLFERSLQNNRFCFVEMARA----------------QGFLSKQE----FLAMSEWYDWVE 67 (114)
Q Consensus 9 ~~~l~~R~~~~~~~~~~~~-~i~eRs~~sd~~vF~~~~~~----------------~g~~~~~e----~~~y~~~~~~~~ 67 (114)
.--+.+|.+.+.++...++ .+++- -.|--.+.. .|.+++.+ -+.|..++..+.
T Consensus 358 ~KT~~~Rakvi~~Wv~~GGVlLvGY------emfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~ 431 (1387)
T KOG1016|consen 358 VKTFDQRAKVIEQWVQTGGVLLVGY------EMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALL 431 (1387)
T ss_pred hhhHHHHHHHHHHHhccCCEEEehH------HHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhc
Confidence 3346788999988875444 34443 233222221 23344333 344555555554
Q ss_pred hhcccCCCEEEE--------EecCHHHHHHHHHhcCCccccCCc-----HHHHHH
Q psy16743 68 NNMDIGLDLIVY--------LRSCPKTVHERMLKRNRPEENCVP-----LDYLQS 109 (114)
Q Consensus 68 ~~~~~~pdl~Iy--------L~~~pe~~~~Ri~~Rgr~~E~~i~-----~~Yl~~ 109 (114)
. |-|||+|- ..+....+++-|+.|.|-.=.+.| ++||=.
T Consensus 432 ~---PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCM 483 (1387)
T KOG1016|consen 432 E---PGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCM 483 (1387)
T ss_pred C---CCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhh
Confidence 4 88999994 335566778999988877554333 577643
No 164
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=44.88 E-value=20 Score=24.83 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=14.6
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
.++|+.+||+.+..|+..|-
T Consensus 123 ~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 123 ELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp EEEEE---HHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHH
Confidence 45788999999999999993
No 165
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=44.76 E-value=25 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.1
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
+=++|+|++|.++..+||.+|-.
T Consensus 153 ~~~~i~L~~~r~~L~~RI~~Rvd 175 (253)
T PF01715_consen 153 DFLVIGLDRDREELYERINKRVD 175 (253)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCHHHHHHHHHHHHH
Confidence 34899999999999999999953
No 166
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=44.76 E-value=57 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.3
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
.++|.++.++++.++.++|+..|.
T Consensus 105 ~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 105 VRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred CCcceEEeeeCCHHHHHHHHhCcc
Confidence 589999999999999999998885
No 167
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=44.71 E-value=44 Score=23.21 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=20.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..|=+.|=+.||++++.+|=..||..
T Consensus 108 ~~~vl~VgV~Cpleil~~RE~~RgDR 133 (174)
T PF07931_consen 108 GLPVLFVGVRCPLEILERRERARGDR 133 (174)
T ss_dssp TS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred CCceEEEEEECCHHHHHHHHHhcCCc
Confidence 45779999999999999999999864
No 168
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=43.20 E-value=25 Score=24.34 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHH
Q psy16743 49 GFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSL 110 (114)
Q Consensus 49 g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l 110 (114)
..+++.+++.|..|+...+..+.+.++.. .+|+...+|+.-.=-..|..-.+++|.++
T Consensus 11 ~~l~~~~~~~~~~W~~~~ir~l~~l~~~~----~d~~~iak~l~p~is~~ev~~sL~~L~~~ 68 (171)
T PF14394_consen 11 RVLDEDEFEYYSSWYHPAIRELLPLMPFA----PDPEWIAKRLRPKISAEEVRDSLEFLEKL 68 (171)
T ss_pred eeccHHHHHHHhhhHHHHHHHHhhcCCCC----CCHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 46788999999999999777664444442 27777777773222223333445665554
No 169
>KOG3354|consensus
Probab=40.18 E-value=32 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEEecCHHHHHHHHHhcCCc
Q psy16743 76 LIVYLRSCPKTVHERMLKRNRP 97 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rgr~ 97 (114)
..|||-++.|+..+|+.+|..-
T Consensus 120 ~fi~l~~s~evi~~Rl~~R~gH 141 (191)
T KOG3354|consen 120 HFILLSASFEVILKRLKKRKGH 141 (191)
T ss_pred EEeeeeccHHHHHHHHhhcccc
Confidence 6799999999999999999653
No 170
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=39.09 E-value=22 Score=29.28 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=15.5
Q ss_pred EEEEEecCHHHHHHHHH
Q psy16743 76 LIVYLRSCPKTVHERML 92 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~ 92 (114)
++|||++|+++|.+|+.
T Consensus 494 ivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 494 IEVHVATPLEVCEQRDR 510 (568)
T ss_pred EEEEEcCCHHHHHHhcc
Confidence 58999999999999984
No 171
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=38.41 E-value=27 Score=24.32 Aligned_cols=22 Identities=32% Similarity=0.612 Sum_probs=19.3
Q ss_pred ccCCCEEEEEecCHHHHHHHHHhcC
Q psy16743 71 DIGLDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 71 ~~~pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
..+||.+||| ||+-.+||-.+.
T Consensus 33 EIKPDGliYL---PEikYRRiLN~A 54 (171)
T PF06420_consen 33 EIKPDGLIYL---PEIKYRRILNKA 54 (171)
T ss_pred eECCCceEEc---hHHHHHHHHHHh
Confidence 3799999999 999999998774
No 172
>PRK00023 cmk cytidylate kinase; Provisional
Probab=37.93 E-value=45 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.1
Q ss_pred cCCCEEEEEecCHHHHHHHHHh
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~ 93 (114)
+.-++.|||++|+++..+|..+
T Consensus 138 ~~a~~~ifl~a~~e~R~~Rr~~ 159 (225)
T PRK00023 138 PDAELKIFLTASAEERAERRYK 159 (225)
T ss_pred CCCCEEEEEECCHHHHHHHHHH
Confidence 5567899999999987666443
No 173
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=37.77 E-value=49 Score=24.60 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHHHh
Q psy16743 58 AMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112 (114)
Q Consensus 58 ~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l~~ 112 (114)
.+..+-+.+...+ ||.-|+.=-+-..+.+|+++|+. .+...+.+-|++|.+
T Consensus 19 ti~~ie~~~~~~f---p~~~V~~AfTS~~I~~kl~~~~g-~~i~~~~eaL~~L~~ 69 (262)
T PF06180_consen 19 TIDAIEKAVREAF---PDYDVRRAFTSRIIRKKLAERDG-IKIDSPEEALAKLAD 69 (262)
T ss_dssp HHHHHHHHHHHCS---TTSEEEEEES-HHHHHHHHHCHT------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCcEEEEchHHHHHHHHHhcCC-CCcCCHHHHHHHHHH
Confidence 4555666666655 99999999999999999998843 223345677777754
No 174
>TIGR03751 conj_TIGR03751 conjugative transfer region lipoprotein, TIGR03751 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.24 E-value=30 Score=22.69 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=10.3
Q ss_pred hhcccCCCEEEEEe
Q psy16743 68 NNMDIGLDLIVYLR 81 (114)
Q Consensus 68 ~~~~~~pdl~IyL~ 81 (114)
..+ |.||+++|+=
T Consensus 71 ~RL-PNPdlvMYVf 83 (116)
T TIGR03751 71 PRL-PNPDLVMYVF 83 (116)
T ss_pred cCC-CCCCeEEEEe
Confidence 456 9999999873
No 175
>KOG0635|consensus
Probab=36.55 E-value=18 Score=25.39 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=19.0
Q ss_pred CCEEEEEecCHHHHHHH----HHhcCCccc
Q psy16743 74 LDLIVYLRSCPKTVHER----MLKRNRPEE 99 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~R----i~~Rgr~~E 99 (114)
+=+-||+++|.++|..| +-|+.|..+
T Consensus 129 ~FiEvfmdvpl~vcE~RDPKGLYK~ARaGk 158 (207)
T KOG0635|consen 129 DFIEVFMDVPLEVCEARDPKGLYKLARAGK 158 (207)
T ss_pred CeEEEEecCcHHHhhccCchhHHHHHhccc
Confidence 33669999999999776 555555544
No 176
>KOG1344|consensus
Probab=35.35 E-value=76 Score=23.75 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcccCCCEEEE
Q psy16743 48 QGFLSKQEFLAMSEWYDWVENNMDIGLDLIVY 79 (114)
Q Consensus 48 ~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~Iy 79 (114)
+|+-+++.....+........+ ..||++||
T Consensus 225 ~gTeddeYLrkl~r~l~~sl~e--f~Pd~VvY 254 (324)
T KOG1344|consen 225 NGTEDDEYLRKLKRCLMQSLAE--FRPDMVVY 254 (324)
T ss_pred cCCCchHHHHHHHHHHHHHHHh--hCCcEEEE
Confidence 4555555555555554444444 47999999
No 177
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=34.98 E-value=55 Score=24.44 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHH
Q psy16743 49 GFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSL 110 (114)
Q Consensus 49 g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l 110 (114)
..+++++++.|..|+..++..+.+.++. ..+|+...+|+.--=-..|..-.+++|.++
T Consensus 109 ~~L~~~~~~y~~~W~~~virel~~~~~~----~~~~~~ia~~l~p~is~~ev~~sL~~L~~~ 166 (271)
T TIGR02147 109 RVLAADQFEYYRHWYNSVIRELLGVMPF----ADDPEELAKRCFPKISAEQVKESLDLLERL 166 (271)
T ss_pred eeccHHHHHHHHHHHHHHHHHHhhcCCC----CCCHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3588899999999999988876455552 335665555553111112223345555543
No 178
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=33.82 E-value=54 Score=22.57 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=12.9
Q ss_pred cCCCEEEEEecCHHHHHHH
Q psy16743 72 IGLDLIVYLRSCPKTVHER 90 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~R 90 (114)
|.-|+-|||.++|++=.+|
T Consensus 78 PdA~~KifLtAs~e~RA~R 96 (157)
T PF02224_consen 78 PDADLKIFLTASPEVRARR 96 (157)
T ss_dssp TT-SEEEEEE--HHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHH
Confidence 7788999999999885444
No 179
>KOG4763|consensus
Probab=31.52 E-value=40 Score=20.25 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCccccCCc--HHHHHHHH
Q psy16743 84 PKTVHERMLKRNRPEENCVP--LDYLQSLH 111 (114)
Q Consensus 84 pe~~~~Ri~~Rgr~~E~~i~--~~Yl~~l~ 111 (114)
.+.|-+||+.|+..+|.... -|||..+.
T Consensus 36 l~~C~~rv~s~s~tee~Ct~e~fDy~h~~D 65 (77)
T KOG4763|consen 36 LQACVKRVQSRSSTEEHCTGEYFDYWHCLD 65 (77)
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 58899999999988886322 47776554
No 180
>COG0645 Predicted kinase [General function prediction only]
Probab=31.30 E-value=1.3e+02 Score=21.03 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhcCC
Q psy16743 51 LSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 51 ~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
..+.+.+.+....+ .. ..|=..|-+.+|+++.-+|+.+|.-
T Consensus 86 ~r~~~R~~~~~~A~----~~-gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 86 DRPQERALARALAR----DV-GVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CCHHHHHHHHHHHh----cc-CCceEEEEcCCcHHHHHHHHHHhCC
Confidence 34444444444432 22 4566889999999999999999976
No 181
>KOG2792|consensus
Probab=31.29 E-value=78 Score=23.86 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCH
Q psy16743 50 FLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCP 84 (114)
Q Consensus 50 ~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~p 84 (114)
.|.++|++..-++.+.+.... ..|.+=|++-++|
T Consensus 153 DICPdELeKm~~~Vd~i~~~~-~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 153 DICPDELEKMSAVVDEIEAKP-GLPPVPLFISVDP 186 (280)
T ss_pred CcChHHHHHHHHHHHHHhccC-CCCccceEEEeCc
Confidence 478999999999999987765 3444456667666
No 182
>PHA02891 hypothetical protein; Provisional
Probab=31.22 E-value=44 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=20.7
Q ss_pred ecCHHHHHHHHHhcCCccccCCc---HHHHHHHH
Q psy16743 81 RSCPKTVHERMLKRNRPEENCVP---LDYLQSLH 111 (114)
Q Consensus 81 ~~~pe~~~~Ri~~Rgr~~E~~i~---~~Yl~~l~ 111 (114)
-.||+.+++||. |...|.+++ .-+|..|+
T Consensus 88 i~PPDD~~~rIF--G~e~~idvniF~e~FL~ELn 119 (120)
T PHA02891 88 IIPPDDALKRIF--GDESEIDINIFAEKFLAELN 119 (120)
T ss_pred cCCcHHHHHHHh--CCcceechHHHHHHHHHHhc
Confidence 468999999997 777776655 35665554
No 183
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.79 E-value=45 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=14.8
Q ss_pred CCCEEEEEecCHHHHHHHHHh
Q psy16743 73 GLDLIVYLRSCPKTVHERMLK 93 (114)
Q Consensus 73 ~pdl~IyL~~~pe~~~~Ri~~ 93 (114)
.-|=+..+|+||+...+|++.
T Consensus 154 ~Adev~lVDi~Pe~L~~RL~~ 174 (211)
T PF02702_consen 154 RADEVELVDITPEELLERLKE 174 (211)
T ss_dssp T-SCEEEB---HHHHHHHHHT
T ss_pred hcCeEEEecCCHHHHHHHHHc
Confidence 456889999999999999965
No 184
>PF15467 SGIII: Secretogranin-3
Probab=30.36 E-value=68 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q psy16743 39 FCFVEMARAQGFLSKQEFLAMSEWYDWVEN 68 (114)
Q Consensus 39 ~vF~~~~~~~g~~~~~e~~~y~~~~~~~~~ 68 (114)
-=|.+||..-|+|+++|=..|..-.+.++.
T Consensus 297 IDFVKMMVKYGTItPEEGVsYLENLD~mIA 326 (453)
T PF15467_consen 297 IDFVKMMVKYGTITPEEGVSYLENLDAMIA 326 (453)
T ss_pred HHHHHHHHHhcCcChhhhhHHHHhHHHHHH
Confidence 358999999999999998889888888654
No 185
>PLN02318 phosphoribulokinase/uridine kinase
Probab=30.05 E-value=40 Score=28.46 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=19.8
Q ss_pred cCCCEEEEEecCHHHHHH-H----HHhcCCcccc
Q psy16743 72 IGLDLIVYLRSCPKTVHE-R----MLKRNRPEEN 100 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~-R----i~~Rgr~~E~ 100 (114)
+.-|+.||+++|++.++. | +..||++.|.
T Consensus 175 ~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es 208 (656)
T PLN02318 175 PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE 208 (656)
T ss_pred hhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH
Confidence 456899999988777643 3 4456777664
No 186
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=29.16 E-value=72 Score=21.78 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCEEEEEecCHHHHHHHHHhcC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rg 95 (114)
.-+-|+|.+|.+...+|+.+|.
T Consensus 114 ~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 114 NVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp TEEEEEEEE-HHHHHHHHHHHH
T ss_pred CeEEEEEECCHHHHHHHHHHHc
Confidence 4699999999999999999984
No 187
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=28.69 E-value=1.4e+02 Score=17.89 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhc-CCc
Q psy16743 50 FLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKR-NRP 97 (114)
Q Consensus 50 ~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~R-gr~ 97 (114)
.+++.|++...+-.|.+.+.+ +....+...|+.|+ ||+
T Consensus 11 ~v~~~dfne~~kRLdeieekv----------ef~~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKV----------EFVNGEVYQRIGKKIGRD 49 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHhcch
Confidence 356677766666667666654 34456667777775 554
No 188
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=28.56 E-value=48 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=18.2
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
...||.+|||-.+||+-..|
T Consensus 69 ~~l~L~TSPEy~mKrLLAag 88 (322)
T COG2269 69 KPLWLHTSPEYHMKRLLAAG 88 (322)
T ss_pred ceeeeecCcHHHHHHHHHcc
Confidence 67999999999999998876
No 189
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=27.60 E-value=62 Score=24.36 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=18.1
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
+.|+|+.|.+...+||.+|-
T Consensus 187 ~~i~l~~dr~~L~~rI~~Rv 206 (287)
T TIGR00174 187 VQIGLASSREPLHQRIEQRV 206 (287)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 57999999999999999984
No 190
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=26.80 E-value=1.5e+02 Score=19.85 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.2
Q ss_pred cCCCEEEEEecCHHHH-HHHHHhcCCc
Q psy16743 72 IGLDLIVYLRSCPKTV-HERMLKRNRP 97 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~-~~Ri~~Rgr~ 97 (114)
.+||++|--..-|..+ +.+++++|..
T Consensus 88 ~~PD~IIsThp~~~~~~l~~lk~~~~~ 114 (169)
T PF06925_consen 88 FQPDLIISTHPFPAQVPLSRLKRRGRL 114 (169)
T ss_pred cCCCEEEECCcchhhhHHHHHHHhhcc
Confidence 5899999888877777 9999887753
No 191
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=25.83 E-value=41 Score=20.92 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=12.7
Q ss_pred ecCHHHHHHHHHhc
Q psy16743 81 RSCPKTVHERMLKR 94 (114)
Q Consensus 81 ~~~pe~~~~Ri~~R 94 (114)
|.+.+.|++|++++
T Consensus 20 D~tl~~ClerLk~W 33 (95)
T PF13496_consen 20 DSTLQKCLERLKQW 33 (95)
T ss_pred chHHHHHHHHHHHH
Confidence 78899999999986
No 192
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=25.51 E-value=2.4e+02 Score=19.69 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCc
Q psy16743 85 KTVHERMLKRNRP 97 (114)
Q Consensus 85 e~~~~Ri~~Rgr~ 97 (114)
++|.+|+.+||..
T Consensus 109 ~it~~RV~~RGDN 121 (168)
T PF08303_consen 109 RITQDRVLARGDN 121 (168)
T ss_pred HHHHHHHHhcCcC
Confidence 7899999999955
No 193
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=24.83 E-value=1.5e+02 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHH
Q psy16743 53 KQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTV 87 (114)
Q Consensus 53 ~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~ 87 (114)
+++++.|.+-++.-......+||+.|+=..+.+..
T Consensus 78 d~gFe~fyq~~Q~elnTIgKRPDlLiF~~~~~~~s 112 (366)
T PF09545_consen 78 DEGFELFYQRLQRELNTIGKRPDLLIFKKSDFDDS 112 (366)
T ss_pred chhHHHHHHHHHHHhhccCCCCcEEEEeccccchh
Confidence 45666666666553333458999999988876653
No 194
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=24.82 E-value=75 Score=24.09 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=18.3
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
++|+|++|.++..+||.+|-
T Consensus 191 ~~~~l~~dr~~L~~rI~~Rv 210 (307)
T PRK00091 191 LIIGLDPDREELYERINQRV 210 (307)
T ss_pred EEEEEcCCHHHHHHHHHHHH
Confidence 68899999999999999984
No 195
>COG3411 Ferredoxin [Energy production and conversion]
Probab=24.56 E-value=1.2e+02 Score=17.72 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=21.4
Q ss_pred cCCCEEEEEecCHHHHHHHHHh---cCCccccC
Q psy16743 72 IGLDLIVYLRSCPKTVHERMLK---RNRPEENC 101 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~Ri~~---Rgr~~E~~ 101 (114)
.-||-+.|=+++|+.+-+=+++ +||..|..
T Consensus 22 vYpegvWY~~V~p~~a~rIv~~hl~~Gr~Ve~~ 54 (64)
T COG3411 22 VYPEGVWYTRVDPEDARRIVQSHLLGGRPVEEL 54 (64)
T ss_pred EecCCeeEeccCHHHHHHHHHHHHhCCCcchhh
Confidence 4588888889999988544433 68887653
No 196
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.06 E-value=2.5e+02 Score=20.21 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=33.5
Q ss_pred HHHHHH--HHHcCCCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHHHHHHhc
Q psy16743 39 FCFVEM--ARAQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKR 94 (114)
Q Consensus 39 ~vF~~~--~~~~g~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~~Ri~~R 94 (114)
|.|+.+ +|..| +..|+.-.+++.+++..+. ...+-..-=..+.-.|+.||..-
T Consensus 15 fyf~~~c~aFR~~--r~~dFr~~rdi~e~ll~~~-~~~~a~~~k~l~i~QfLsRI~eG 69 (200)
T cd00280 15 FYFHSACRAFREG--RYEDFRRTRDIAEALLVGP-LKLTATQLKTLRIMQFLSRIAEG 69 (200)
T ss_pred HHHHHHHHHHHcc--ChHHHHHHHHHHHHHHhcc-ccccccchhHhHHHHHHHHHHcC
Confidence 666666 66677 8888888888888877654 22222221123456678999754
No 197
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=23.87 E-value=1.1e+02 Score=20.27 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.3
Q ss_pred CCEEEEEecCHHHHHHHHHhcCCccccCCcHHHHHHH
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSL 110 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr~~E~~i~~~Yl~~l 110 (114)
+.-+||=+++.+.+++.|.++|...+. +-..+|+++
T Consensus 94 ~~d~v~Gdvsl~~ALe~ia~~g~~~~~-~A~~~L~~~ 129 (130)
T TIGR02742 94 DYDVVYGNVSLKGALEKMAQDGDSPQI-VAQQLLERI 129 (130)
T ss_pred CeeEEEecccHHHHHHHHHHhCCCcHH-HHHHHHHhc
Confidence 356899999999999999988866552 445666654
No 198
>PF14044 NETI: NETI protein
Probab=23.83 E-value=69 Score=18.31 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=11.1
Q ss_pred CHHHHHHHHHhcC
Q psy16743 83 CPKTVHERMLKRN 95 (114)
Q Consensus 83 ~pe~~~~Ri~~Rg 95 (114)
+.+.|++||++-|
T Consensus 9 TI~~CL~RM~~eG 21 (57)
T PF14044_consen 9 TISDCLARMKKEG 21 (57)
T ss_pred cHHHHHHHHHHcC
Confidence 5689999999876
No 199
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=23.51 E-value=1.5e+02 Score=20.64 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhcccCCCEEEEEecCHHHH---HHHHHhcCCc
Q psy16743 56 FLAMSEWYDWVENNMDIGLDLIVYLRSCPKTV---HERMLKRNRP 97 (114)
Q Consensus 56 ~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~---~~Ri~~Rgr~ 97 (114)
+....+..+............++||=+||... .+.|.+=|..
T Consensus 87 y~~L~~~l~~~~~~~~~~~~rifYLAvPP~~f~~i~~~L~~~~l~ 131 (183)
T PF00479_consen 87 YAALKKALEELENKYGTEANRIFYLAVPPSLFGPIARNLSEAGLN 131 (183)
T ss_dssp HHHHHHHHHHHHHCTTTTSEEEEEE-S-GGGHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHhhhhcCCCcceEEEeccCHHHHHHHHHHHHHHhcc
Confidence 33333333333332235678999999999765 4455444443
No 200
>PLN02165 adenylate isopentenyltransferase
Probab=23.30 E-value=82 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=18.1
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
++|+|+.+.++..+||.+|=
T Consensus 177 ~~i~l~~dr~~L~~RI~~Rv 196 (334)
T PLN02165 177 CFIWVDVSEPVLFEYLSKRV 196 (334)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 67899999999999999983
No 201
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=22.91 E-value=85 Score=23.80 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.9
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
++|.|+.|.+...+||.+|=
T Consensus 189 ~~i~l~~~r~~L~~rI~~Rv 208 (300)
T PRK14729 189 LAIGLKRPMEEMKSRIISRV 208 (300)
T ss_pred EEEEeCCCHHHHHHHHHHHH
Confidence 67789999999999999984
No 202
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=22.79 E-value=1.1e+02 Score=25.39 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=16.0
Q ss_pred CCEEEEEecCHHHHHHHH
Q psy16743 74 LDLIVYLRSCPKTVHERM 91 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri 91 (114)
+-.+|||++|+++|.+|.
T Consensus 558 ~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 558 EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred CeEEEEECCCHHHHHhhC
Confidence 448999999999999995
No 203
>PLN02748 tRNA dimethylallyltransferase
Probab=22.76 E-value=82 Score=25.50 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=18.1
Q ss_pred EEEEEecCHHHHHHHHHhcC
Q psy16743 76 LIVYLRSCPKTVHERMLKRN 95 (114)
Q Consensus 76 l~IyL~~~pe~~~~Ri~~Rg 95 (114)
++|+|+++.+++.+||.+|=
T Consensus 229 ~~i~l~~~r~~L~~RI~~Rv 248 (468)
T PLN02748 229 CFICVDADTAVLDRYVNQRV 248 (468)
T ss_pred EEEEeCCCHHHHHHHHHHHH
Confidence 67899999999999999984
No 204
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=22.46 E-value=2.9e+02 Score=19.58 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHH--------HHHHHhc----CCcccc-CCcHHHHHHHHhc
Q psy16743 50 FLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTV--------HERMLKR----NRPEEN-CVPLDYLQSLHES 113 (114)
Q Consensus 50 ~~~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~--------~~Ri~~R----gr~~E~-~i~~~Yl~~l~~~ 113 (114)
.+++++.....++.+.....+ |++...|.-=.+|+.+ .+|..+| .+..+. ...+.||.+|.+.
T Consensus 84 ~i~~e~v~~LE~~id~y~~~l-~~l~~FiLPGgs~~aA~lh~ARtv~RRAER~~V~l~~~~~~~~~~l~YlNRLSdl 159 (184)
T COG2096 84 RITEEDVKRLEKRIDAYNAEL-PPLKSFVLPGGSPAAAALHVARTVARRAERRLVALSREEEANLVVLKYLNRLSDL 159 (184)
T ss_pred ccCHHHHHHHHHHHHHHHhcC-CCcceeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 478888888999999998888 7777777666676655 2333332 233332 3448899988764
No 205
>KOG0092|consensus
Probab=21.94 E-value=2.1e+02 Score=20.58 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHhhcccCCCEEEEEecCHHHHH
Q psy16743 52 SKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVH 88 (114)
Q Consensus 52 ~~~e~~~y~~~~~~~~~~~~~~pdl~IyL~~~pe~~~ 88 (114)
+.+-+..-++|+..+.... + |+++|+|=.+---..
T Consensus 89 ~~~SF~~aK~WvkeL~~~~-~-~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 89 DEESFEKAKNWVKELQRQA-S-PNIVIALVGNKADLL 123 (200)
T ss_pred cHHHHHHHHHHHHHHHhhC-C-CCeEEEEecchhhhh
Confidence 4455677778888888887 5 999999976544333
No 206
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=21.69 E-value=53 Score=17.17 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=9.1
Q ss_pred ecCHHHHHHHHHh
Q psy16743 81 RSCPKTVHERMLK 93 (114)
Q Consensus 81 ~~~pe~~~~Ri~~ 93 (114)
.+++.++.+||++
T Consensus 28 glS~~~v~~Ri~r 40 (42)
T PF13404_consen 28 GLSESTVRRRIRR 40 (42)
T ss_dssp TS-HHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 5688888888864
No 207
>PF13448 DUF4114: Domain of unknown function (DUF4114)
Probab=21.08 E-value=54 Score=19.52 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.1
Q ss_pred CCEEEEEecCH
Q psy16743 74 LDLIVYLRSCP 84 (114)
Q Consensus 74 pdl~IyL~~~p 84 (114)
=|++|+++.+|
T Consensus 73 ND~vf~v~~~p 83 (83)
T PF13448_consen 73 NDVVFYVDINP 83 (83)
T ss_pred ccEEEEEEcCC
Confidence 46888888765
No 208
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=21.07 E-value=1.2e+02 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.9
Q ss_pred CCEEEEEecCHHHHHHHHHhcCC
Q psy16743 74 LDLIVYLRSCPKTVHERMLKRNR 96 (114)
Q Consensus 74 pdl~IyL~~~pe~~~~Ri~~Rgr 96 (114)
.=-+|||+++.++.++|-+.=.|
T Consensus 82 ~~~ilFLdA~d~~LirRy~eTRR 104 (284)
T PF03668_consen 82 DVRILFLDASDEVLIRRYSETRR 104 (284)
T ss_pred ceEEEEEECChHHHHHHHHhccC
Confidence 44689999999999999887333
No 209
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=20.43 E-value=1.8e+02 Score=16.83 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCccccC
Q psy16743 84 PKTVHERMLKRNRPEENC 101 (114)
Q Consensus 84 pe~~~~Ri~~Rgr~~E~~ 101 (114)
-+.|.+|+.+|....|.-
T Consensus 24 y~~C~eRV~~~~~~~e~C 41 (65)
T PF02320_consen 24 YDECVERVNSRSETKEDC 41 (65)
T ss_dssp HHHHHHHHHHCSSSSG-S
T ss_pred HHHHHHHHhcCCCCCCCc
Confidence 368999999998876653
No 210
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=20.14 E-value=1.3e+02 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=16.9
Q ss_pred cCCCEEEEEecCHHHHHH-HHHhc
Q psy16743 72 IGLDLIVYLRSCPKTVHE-RMLKR 94 (114)
Q Consensus 72 ~~pdl~IyL~~~pe~~~~-Ri~~R 94 (114)
|.-++-|||.++||+=.+ |.++.
T Consensus 136 PdA~lKiFLtAS~e~RA~RR~~q~ 159 (222)
T COG0283 136 PDAELKIFLTASPEERAERRYKQL 159 (222)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHH
Confidence 677899999999987544 44433
Done!