RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16743
         (114 letters)



>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
           [TaxId: 10331]}
          Length = 333

 Score = 80.0 bits (197), Expect = 9e-20
 Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 19/125 (15%)

Query: 2   RWNFSFQHYVQLTRLQMQT-------------KVTDKKVQLFERSLQNNRFCFVEMARAQ 48
                +Q       L +                       +F+R    +  CF       
Sbjct: 77  LITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLL 136

Query: 49  GFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQ 108
           G +S    +AM           +     IV      +    R+  R R  E  + +  + 
Sbjct: 137 GDMSMCALMAMVATLPR-----EPQGGNIVVTTLNVEEHIRRLRTRARIGEQ-IDITLIA 190

Query: 109 SLHES 113
           +L   
Sbjct: 191 TLRNV 195


>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
           1, different strains [TaxId: 10298]}
          Length = 329

 Score = 73.9 bits (181), Expect = 2e-17
 Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 20/127 (15%)

Query: 1   MRWNFSFQHYVQLTRLQMQTKVT--------------DKKVQLFERSLQNNRFCFVEMAR 46
                S Q  + +        +                    +F+R       C+     
Sbjct: 73  AVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARY 132

Query: 47  AQGFLSKQEFLAMSEWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDY 106
             G ++ Q  LA             +    IV          +R+ KR RP E  + L  
Sbjct: 133 LMGSMTPQAVLAFVALIPP-----TLPGTNIVLGALPEDRHIDRLAKRQRPGER-LDLAM 186

Query: 107 LQSLHES 113
           L ++   
Sbjct: 187 LAAIRRV 193


>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
           [TaxId: 10335]}
          Length = 331

 Score = 70.4 bits (172), Expect = 2e-16
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 8   QHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMSEWYDWVE 67
                 T   +Q      K+ L +R    +  CF       G +S      +        
Sbjct: 99  ALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPA-- 156

Query: 68  NNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112
              +     +V       +   R+ KR RP E  V L ++  L  
Sbjct: 157 ---EPPGTNLVVCTVSLPSHLSRVSKRARPGET-VNLPFVMVLRN 197


>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 197

 Score = 65.0 bits (157), Expect = 6e-15
 Identities = 51/112 (45%), Positives = 74/112 (66%)

Query: 1   MRWNFSFQHYVQLTRLQMQTKVTDKKVQLFERSLQNNRFCFVEMARAQGFLSKQEFLAMS 60
            +W   FQ YV LT LQ  T  T+KK+++ ERS+ + R+CFVE  R  G L +  +  + 
Sbjct: 63  KKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLE 122

Query: 61  EWYDWVENNMDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLHE 112
           EWY ++E ++ +  DLI+YLR+ P+  +ER+ +R R EE+CVPL YLQ LHE
Sbjct: 123 EWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHE 174


>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 241

 Score = 55.8 bits (133), Expect = 3e-11
 Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 9/121 (7%)

Query: 1   MRWNFSFQHYVQLTRLQMQTKVTDKKVQ-------LFERSLQNNRFCFVEMARAQGFLSK 53
            RW+++FQ +  L+RL++Q +   +K+        +FERS+ ++R+ F +     G LS 
Sbjct: 68  ARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSD 127

Query: 54  QEFLAMSEWYDWVENN--MDIGLDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
            E+    +W+ ++       I L   +YL++ P+   +R+ +R R EE  + L YL+ LH
Sbjct: 128 IEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLH 187

Query: 112 E 112
            
Sbjct: 188 G 188


>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 241

 Score = 49.2 bits (116), Expect = 7e-09
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 9/121 (7%)

Query: 1   MRWNFSFQHYVQLTRLQMQT-------KVTDKKVQLFERSLQNNRFCFVEMARAQGFLSK 53
            RW+F+FQ Y  L+R++ Q        K  +K V  FERS+ ++R+ F         +++
Sbjct: 71  ERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNE 130

Query: 54  QEFLAMSEWYDWVENNMDIG--LDLIVYLRSCPKTVHERMLKRNRPEENCVPLDYLQSLH 111
            E+    +W+DW+ N       LD I+YL++ P+T   R+  R R EE  +PL+YL+ LH
Sbjct: 131 TEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLH 190

Query: 112 E 112
            
Sbjct: 191 Y 191


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
           562]}
          Length = 477

 Score = 24.9 bits (54), Expect = 2.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 64  DWVENNMDIGLDLIVYLRSCPKTVHERMLK 93
             +  ++ IG+  I  LR+    +H R L+
Sbjct: 440 GAISEHLQIGIRAIDLLRAEGDRLHSRKLR 469


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,374
Number of extensions: 16283
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 12
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)