RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16746
(247 letters)
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 65.0 bits (159), Expect = 6e-14
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 43 ALYNGVIIGLIVAEILQYTSLNKEDKDILASSFDKHIEVGYILSLGVSEDYRRNGIASLL 102
A +G ++G S D+ V I L V +YR GI + L
Sbjct: 1 AEEDGELVGFASL-----------------SIIDEEGNVAEIEGLAVDPEYRGKGIGTAL 43
Query: 103 LDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRFR 142
L+ L + A K I L VL N+ AI YEK F+
Sbjct: 44 LEALEEY---ARELGLKRIELEVLEDNEAAIALYEKLGFK 80
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 66.6 bits (162), Expect = 1e-13
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 82 GYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRF 141
G+I +L V +YR GI LLD + L E I L V SN+ AI Y K F
Sbjct: 92 GHIYNLAVDPEYRGRGIGRALLDEALERL--RERGLADKIVLEVRESNEAAIGLYRKLGF 149
Query: 142 RLHSFLPYYYS 152
+ YY+
Sbjct: 150 EVVKIRKNYYA 160
>gnl|CDD|233477 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
Members of this model belong to the GCN5-related
N-acetyltransferase (GNAT) superfamily. This model
covers prokarotes and the archaea. The seed contains a
characterized accession for Gram negative E. coli. An
untraceable characterized accession (PIR|S66013) for
Gram positive B. subtilis scores well (205.0) in the
full alignment. Characterized members are lacking in the
archaea. Noise cutoff (72.4) was set to exclude M. loti
paralog of rimI. Trusted cutoff (80.0) was set at next
highest scoring member in the mini-database [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 131
Score = 58.5 bits (142), Expect = 4e-11
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 82 GYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRF 141
+IL++ V +Y+ GI LL LI A+ IFL V SN A Y+K F
Sbjct: 55 AHILNIAVKPEYQGQGIGRALLRELI---DEAKGRGVNEIFLEVRVSNIAAQALYKKLGF 111
Query: 142 RLHSFLPYYYS 152
+ YY
Sbjct: 112 NEIAIRRNYYP 122
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are
similar to the C-terminal region of the D. melanogaster
hypothetical protein FR47. This protein has been found
to consist of two N-acyltransferase-like domains swapped
with the C-terminal strands.
Length = 86
Score = 47.3 bits (113), Expect = 2e-07
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 78 HIEVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYE 137
+ G + +L ++RR G+ S L+ L + F V+ N P+ YE
Sbjct: 18 RLPGGELGALQTLPEHRRRGLGSRLVAALARGIAERG----ITPFAVVVAGNTPSRRLYE 73
Query: 138 KRRFRL 143
K FR
Sbjct: 74 KLGFRK 79
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 44.2 bits (105), Expect = 1e-06
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 20/85 (23%)
Query: 40 SLAALYNGVIIGLIVAEILQYTSLNKEDKDILASSFDKHIEVGYILSLGVSEDYRRNGIA 99
L A +G I+G + YI L V +YR GI
Sbjct: 1 FLVAEDDGEIVGFASLSP-----------------DGSGGDTAYIGDLAVLPEYRGKGIG 43
Query: 100 SLLLDNLISHLTTAENSSCKAIFLH 124
S LL+ A K + L
Sbjct: 44 SALLEAAEEE---ARERGAKRLRLE 65
>gnl|CDD|235142 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 44.9 bits (107), Expect = 4e-06
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 75 FDKHIEVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIH 134
+D H G+ L V D+R GI L+ L L C I L V N +
Sbjct: 64 YDGH--RGWAYYLAVHPDFRGRGIGRALVARLEKKLIAR---GCPKINLQVREDNDAVLG 118
Query: 135 FYEK 138
FYE
Sbjct: 119 FYEA 122
>gnl|CDD|224584 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis].
Length = 187
Score = 38.4 bits (89), Expect = 0.001
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 76 DKHIEVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHF 135
E+GY L +Y G A+ L L+ + E I V N+ +I
Sbjct: 94 GDLAEIGYWLD----PEYWGKGYATEALRALLDYA--FEELGLHRIEATVDPENEASIRV 147
Query: 136 YEKRRFRLHSFLPYYYSIKGRSRDGFTYVL 165
YEK FRL L + IKGR RD Y L
Sbjct: 148 YEKLGFRLEGELRQHEFIKGRWRDTVLYSL 177
>gnl|CDD|222185 pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 79
Score = 35.6 bits (83), Expect = 0.002
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 65 KEDKDILAS-SFDKHIEVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFL 123
+D +I+ E YI + V +YR G S LL +L+ L K +FL
Sbjct: 9 YDDGEIVGFLRLRPIGEGAYIGGVAVDPEYRGQGYGSKLLRHLLEEL------GEKPLFL 62
Query: 124 HVLTSNKPAIHFYEKRRFRL 143
K FYEK F
Sbjct: 63 FAHPQAKK---FYEKLGFEP 79
>gnl|CDD|224167 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 35.0 bits (81), Expect = 0.012
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 80 EVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKR 139
++G + SL V DYR +G LL+ L++ A K +F VLT+ + F+ +R
Sbjct: 64 DLGELRSLAVHPDYRGSGRGERLLERLLAD---ARELGIKELF--VLTTR--SPEFFAER 116
Query: 140 RF 141
F
Sbjct: 117 GF 118
>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this
family are MshD, the acetyltransferase that catalyzes
the final step of mycothiol biosynthesis in various
members of the Actinomyctes, Mycothiol replaces
glutathione in these species [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 292
Score = 35.5 bits (82), Expect = 0.018
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 78 HIEVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYE 137
+G + +GV + G+ L + HL A+ L+V N+ A+ YE
Sbjct: 223 EPALGEVYVVGVDPAAQGRGLGDALTLIGLHHL---AARGLPAVMLYVEADNEAAVRTYE 279
Query: 138 KRRFRLHS 145
K F +
Sbjct: 280 KLGFTVAE 287
>gnl|CDD|140351 PTZ00330, PTZ00330, acetyltransferase; Provisional.
Length = 147
Score = 34.4 bits (79), Expect = 0.022
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 81 VGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRR 140
VG+I + V YR G+ L+ +L A +S C + +L + + FY+K
Sbjct: 82 VGHIEDVVVDPSYRGQGLGRALISDLCE---IARSSGCYKV---ILDCTEDMVAFYKKLG 135
Query: 141 FRLH 144
FR
Sbjct: 136 FRAC 139
>gnl|CDD|225928 COG3393, COG3393, Predicted acetyltransferase [General function
prediction only].
Length = 268
Score = 34.7 bits (80), Expect = 0.031
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 80 EVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKR 139
I + +YR G A+ L+ L + L AE L V + N A Y++
Sbjct: 200 AYAQINGVYTHPEYRGKGYATALVATLAAKLL-AEG--KIP-CLFVNSDNPVARRIYQRI 255
Query: 140 RFRLHSFLPYY 150
FR Y
Sbjct: 256 GFREIGEFREY 266
>gnl|CDD|181904 PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase;
Provisional.
Length = 146
Score = 32.2 bits (74), Expect = 0.10
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 89 VSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRFRLHSFLP 148
V DY+R G+ LL++LI L E ++L V SN AI YE F +
Sbjct: 71 VDPDYQRQGLGRALLEHLIDEL---EKRGVATLWLEVRASNAAAIALYESLGFNEVTIRR 127
Query: 149 YYY 151
YY
Sbjct: 128 NYY 130
>gnl|CDD|236715 PRK10562, PRK10562, putative acetyltransferase; Provisional.
Length = 145
Score = 32.0 bits (73), Expect = 0.11
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 79 IEVGYILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEK 138
+E ++ +L V+ R GI L+ ++ + L V N+ A++FY
Sbjct: 66 LEGRFVGALFVAPKAVRRGIGKALMQHVQQRYP--------HLSLEVYQKNQRAVNFYHA 117
Query: 139 RRFR 142
+ FR
Sbjct: 118 QGFR 121
>gnl|CDD|236088 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 32.1 bits (74), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 84 ILSLGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRFR 142
I SL VSEDYR GI +L++ + K +F LT F+EK FR
Sbjct: 68 IRSLAVSEDYRGQGIGRMLVEACLEEARELG---VKRVF--ALTYQP---EFFEKLGFR 118
>gnl|CDD|132147 TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103.
Members of this protein family belong to the GNAT
family of acetyltransferases. Each is part of a
conserved three-gene cassette sparsely distributed
across at least twenty different species known so far,
including alpha, beta, and gamma Proteobacteria,
Mycobacterium, and Prosthecochloris, which is a member
of the Chlorobi. The other two members of the cassette
are a probable protease and an asparagine synthetase
family protein.
Length = 547
Score = 32.0 bits (73), Expect = 0.28
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 87 LGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRFR 142
L V G+ L+ L H + C + L V+ N+ AI YEK FR
Sbjct: 161 LAVDPQAAHPGVGEALVRALAEHFQSRG---CAYMDLSVMHDNEQAIALYEKLGFR 213
>gnl|CDD|206051 pfam13880, Acetyltransf_13, ESCO1/2 acetyl-transferase.
Length = 70
Score = 29.0 bits (66), Expect = 0.44
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 89 VSEDYRRNGIASLLLDNLISHL 110
VS +RR GIA+ LLD + S+
Sbjct: 13 VSPSHRRKGIATRLLDAVRSNF 34
>gnl|CDD|222309 pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 118
Score = 29.6 bits (67), Expect = 0.68
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 30/112 (26%)
Query: 30 KDITSEPSFYSLAALYNGVIIGLIVAEILQYTSLNKEDKDILASSFDKHIEVGYILSLGV 89
+ +E S A G I+G + D G + L V
Sbjct: 37 AERLAEGSITGFVAERGGEIVGF--------------------AGLDPD---GRLDLLYV 73
Query: 90 SEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRF 141
YR GI LLD + + L ++ A FY + F
Sbjct: 74 RPRYRGRGIGRALLDAIEAEAR------KGIKRLTT-EASLLARPFYLRLGF 118
>gnl|CDD|182263 PRK10140, PRK10140, putative acetyltransferase YhhY; Provisional.
Length = 162
Score = 29.6 bits (66), Expect = 0.95
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 28 WYKDITSEPSFYSLAALYNGVIIGLIVAEILQYTSLNKEDKDILASSFDKHIEVGYILSL 87
W + + P L A +G ++G + ++ Q ++
Sbjct: 41 WQERLADRPGIKQLVACIDGDVVGHLTIDVQQ------------------RPRRSHVADF 82
Query: 88 GVSEDYR--RNGIASLLLDNLISHLTTAEN-SSCKAIFLHVLTSNKPAIHFYEKRRFRL 143
G+ D R G+AS L+ +I +N I L V N PAI Y+K F +
Sbjct: 83 GICVDSRWKNRGVASALMREMIE---MCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEI 138
>gnl|CDD|151221 pfam10740, DUF2529, Protein of unknown function (DUF2529). This
family is conserved in the Bacillales. The function is
not known. Several members are annotated as being YWJG,
a protein expressed downstream of pyrG, a gene encoding
for cytidine triphosphate synthetase.
Length = 172
Score = 28.4 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 62 SLNKEDKDILASSFDKHIEVGYILSLGVSEDYRRNGIASLLLDNLISH 109
S N ++ D LA D HI++ L ED R G SL+ + H
Sbjct: 115 SPNAKEGDSLADHADVHIDLKLKRPLVPDEDGTRIGFPSLMAALYVYH 162
>gnl|CDD|235386 PRK05279, PRK05279, N-acetylglutamate synthase; Validated.
Length = 441
Score = 29.0 bits (66), Expect = 2.3
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 87 LGVSEDYRRNGIASLLLDNLISHLTTAENSSCKAIFLHVLTSNKPAIHFYEKRRFRL 143
L V DYR +G LL + A K +F VLT+ H++ +R F
Sbjct: 365 LAVHPDYRGSGRGERLLKRIEQR---ARQLGLKRLF--VLTTR--TAHWFLERGFVP 414
>gnl|CDD|222199 pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 127
Score = 27.9 bits (63), Expect = 2.5
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 66 EDKDILASSF----------DKHIEVGYILSLGVSEDYRRNGIASLLLDNLISHL 110
D L K G I + +YR G+ LL ++ +
Sbjct: 47 FDDGKLVGQLALYPFRLNVPGKTYPAGGITGVATYPEYRGRGLMRKLLRRALAEM 101
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 268
Score = 28.3 bits (64), Expect = 3.0
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 23/93 (24%)
Query: 41 LAALYNGVIIGLIVAEILQYTSLNKEDKDILASSFDKHIEVGYILSLGVSEDYRRNGIAS 100
LAAL NG+ + ++ IL Y ++ + + E+ L V+ I
Sbjct: 60 LAALLNGLFLVVVALFIL-YEAIERL--------INPEPEIDGGTMLIVA-------IVG 103
Query: 101 LLLDNLISHL------TTAENSSCKAIFLHVLT 127
L++ NLI L + + +A LHVL+
Sbjct: 104 LIV-NLILALYLHRVGHRLGSLALRAAALHVLS 135
>gnl|CDD|182099 PRK09831, PRK09831, putative acyltransferase; Provisional.
Length = 147
Score = 28.0 bits (62), Expect = 3.1
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 83 YILSLGVSEDYRRNGIASLLLDNLI---SHLTTAENSSCKAIF 122
YI L V +Y R G+AS LL LI S LT + + K F
Sbjct: 74 YIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFF 116
>gnl|CDD|153322 cd07638, BAR_ACAP2, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
with Coiled-coil, ANK repeat and PH domain containing
protein 2. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. ACAP2 (ArfGAP with
Coiled-coil, ANK repeat and PH domain containing protein
2), also called centaurin beta-2, is an Arf6-specific
GTPase activating protein (GAP) which mediates Arf6
signaling. Arf6 is involved in the regulation of
endocytosis, phagocytosis, cell adhesion and migration.
ACAP2 contains an N-terminal BAR domain, followed by a
Pleckstrin homology (PH) domain, an Arf GAP domain, and
C-terminal ankyrin (ANK) repeats. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 200
Score = 28.0 bits (62), Expect = 3.3
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 65 KEDKDILASS--FDKHIEVGYILSLGVSEDYRRNGIASLLLDNLISHLT 111
+E +IL ++ +HI + Y+L + V + RR+ I +L + +HLT
Sbjct: 136 EEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLT 184
>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional.
Length = 429
Score = 27.8 bits (62), Expect = 5.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 153 IKGRSRDGFTYVLYINGGHAAWSLC--DY 179
IKG R YV+ NGG + L DY
Sbjct: 158 IKGAFRTRIAYVVQTNGGQFPYELRVSDY 186
>gnl|CDD|173940 cd08181, PPD-like, 1,3-propanediol dehydrogenase-like (PPD).
1,3-propanediol dehydrogenase-like (PPD). This family is
a member of the iron-containing alcohol dehydrogenase
superfamily, and exhibits a dehydroquinate synthase-like
fold. Protein sequence similarity search and other
biochemical evidences suggest that they are close to the
iron-containing 1,3-propanediol dehydrogenase (EC
1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the
oxidation of propane-1,3-diol to 3-hydroxypropanal with
the simultaneous reduction of NADP+ to NADPH. The
protein structure of Thermotoga maritima TM0920 gene
contains one NADP+ and one iron ion.
Length = 357
Score = 27.6 bits (62), Expect = 5.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 14 TSTSLRHSGNYPLSWYKDI 32
T T+L H YPL++ K I
Sbjct: 251 TGTTLPHGLGYPLTYEKGI 269
>gnl|CDD|214611 smart00313, PXA, Domain associated with PX domains. unpubl.
observations.
Length = 176
Score = 27.4 bits (61), Expect = 6.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 218 DYPLSWYKDITSEPSF 233
DY WYK ++ +PSF
Sbjct: 18 DYVQGWYKGVSEDPSF 33
>gnl|CDD|216819 pfam01973, MAF_flag10, Protein of unknown function DUF115. This
family of archaebacterial proteins has no known
function.
Length = 170
Score = 27.2 bits (61), Expect = 6.7
Identities = 7/66 (10%), Positives = 16/66 (24%), Gaps = 5/66 (7%)
Query: 119 KAIFLHVLTSNKPAIHFYEKRRFRLHSFLPYYYSIKGRSRDGFTYVLYING--GHAAWSL 176
+H N + Y+ + + +L+ + A L
Sbjct: 93 DIPLVHAHGVNPELLEKYKGPKIFFVGGTTQAFPWFLED---LGGILFGGFSVANRAVDL 149
Query: 177 CDYVKH 182
Y+
Sbjct: 150 AVYLGF 155
>gnl|CDD|216925 pfam02194, PXA, PXA domain. This domain is associated with PX
domains pfam00787.
Length = 182
Score = 26.8 bits (60), Expect = 7.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 218 DYPLSWYKDITSEPSFYSL--AALRNFF 243
D+ SWY I+ + F + LR+
Sbjct: 18 DFVQSWYSRISPDEEFPNEIRQVLRHAL 45
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.432
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,835,133
Number of extensions: 1199821
Number of successful extensions: 1008
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 44
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)