BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16748
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 2/124 (1%)
Query: 65 MAS-SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAA 123
MAS + +RIE DTFGEL+VPNDKYYGAQTVRST+NF IGG TERMP PVI A G LK+AA
Sbjct: 24 MASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAA 83
Query: 124 AQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAI 183
A+VN+++GLD K+A+AI KAADEV GKL +HFPLV+WQTGSGTQTNMN NEVISNRAI
Sbjct: 84 AEVNQDYGLDPKIANAIMKAADEVAEGKLN-DHFPLVVWQTGSGTQTNMNVNEVISNRAI 142
Query: 184 EILG 187
E+LG
Sbjct: 143 EMLG 146
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 101/131 (77%), Gaps = 2/131 (1%)
Query: 58 TLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMG 117
+ K+ +R +S +R E D FGE+ VP DKY+GAQT RS NF IGG ERMPLP++ A G
Sbjct: 16 SYKLNIRRMNSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFG 75
Query: 118 TLKKAAAQVNKEF-GLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNE 176
LKK+AA VN+ GLD K++ AI +AADEV SGKL +HFPLV++QTGSGTQ+NMN NE
Sbjct: 76 VLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKL-DDHFPLVVFQTGSGTQSNMNANE 134
Query: 177 VISNRAIEILG 187
VISNRAIEILG
Sbjct: 135 VISNRAIEILG 145
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 93/120 (77%), Gaps = 2/120 (1%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKE 129
YRIE DT GE++VP DKY+GAQT RS NF IG + RMPL +I A G LKKAAA+ N E
Sbjct: 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLE 62
Query: 130 FG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
G L ++A AI +AA+EV+ GK + +HFPLV++QTGSGTQTNMN NEVI+NRA EILGK
Sbjct: 63 LGELPEEIAKAIIQAAEEVVQGK-WDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGK 121
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 87/118 (73%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E DTFG ++V +D+Y+GAQ RS NF IG E+ PL ++ A+G +K+AAA+ N
Sbjct: 37 RTETDTFGPIEVASDRYWGAQAQRSLGNFKIG--WEKQPLAIVRALGIVKQAAARANXAL 94
Query: 131 G-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
G LD + DAI KAA EVI GKL EHFPLV+WQTGSGTQ+N N NEV+SNRAIE+LG
Sbjct: 95 GRLDPAIGDAIVKAAQEVIDGKL-DEHFPLVVWQTGSGTQSNXNANEVVSNRAIELLG 151
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 87/118 (73%), Gaps = 4/118 (3%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKE 129
YRIE+D+FGE+Q+ Y+GAQT RS NF I ++MP +I A+ LKK AAQVN E
Sbjct: 25 YRIESDSFGEIQIEEKFYWGAQTQRSLNNFKIS--KQKMPKILIRALAILKKCAAQVNYE 82
Query: 130 FG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEIL 186
FG L+ K+A +I KA D +++G+ + ++FPLV+WQTGSGTQTNMN NEVI++ A E L
Sbjct: 83 FGDLEYKIATSIDKAIDRILAGE-FEDNFPLVVWQTGSGTQTNMNMNEVIASIANEEL 139
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 86/118 (72%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R+E DTFGE+ VP + +GAQT RS NF I TE+ +I A+ +K+AAA VN E
Sbjct: 1 RMERDTFGEIAVPAARLWGAQTQRSLQNFKI--STEKQSPELIHALALIKRAAAAVNLEL 58
Query: 131 GLDAK-VADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
G+ A+ A+AI AADE+I+G+ +A+ FPL +WQTGSGTQTNMN NEVI+NRA E+LG
Sbjct: 59 GVLAQDKANAIVAAADEIIAGR-HADEFPLAVWQTGSGTQTNMNLNEVIANRASELLG 115
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ G + VP DK +GAQT RS +F I TE+MP +I A+ K+AAA+VN++
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNEDL 62
Query: 131 GL-DAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
GL + A AI +AADEV++G+ + + FPL IWQTGSGTQ+NMN NEV++NRA E+LG
Sbjct: 63 GLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ G + VP DK +GAQT RS +F I TE+MP +I A+ K+AAA+VN++
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNEDL 62
Query: 131 GL-DAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
GL + A AI +AADEV++G+ + + FPL IWQTGSGTQ+NMN NEV++NRA E+LG
Sbjct: 63 GLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ G + VP DK +GAQT RS +F I TE+MP +I A+ K+AAA+VN++
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNEDL 62
Query: 131 GL-DAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
GL + A AI +AADEV++G+ + + FPL IWQTGSGTQ+NMN NEV++NRA E+LG
Sbjct: 63 GLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ G + VP DK +GAQT RS +F I TE+MP +I A+ K+AAA+VN++
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNEDL 62
Query: 131 GL-DAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
GL + A AI +AADEV++G+ + + FPL IWQTGSGTQ+NMN NEV++NRA E+LG
Sbjct: 63 GLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 85/118 (72%), Gaps = 4/118 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ G + VP DK +GAQT RS +F I TE+MP +I A+ K+AAA+VN++
Sbjct: 5 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRI--STEKMPTSLIHALALTKRAAAKVNEDL 62
Query: 131 GL-DAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187
GL + A AI +AADEV++G+ + + FPL IWQTGSGTQ+NMN NEV++NRA E+LG
Sbjct: 63 GLLSEEKASAIRQAADEVLAGQ-HDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
RIE D GE ++P D YYG QT+R+T NFPI G R+ +I ++G +KK+AA N E
Sbjct: 6 RIEKDFLGEKEIPKDAYYGVQTIRATENFPITG--YRIHPELIKSLGIVKKSAALANMEV 63
Query: 131 G-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
G LD +V I KAADEVI GK + + F + Q G+GT NMN NEVI+NRA+E++G+
Sbjct: 64 GLLDKEVGQYIVKAADEVIEGK-WNDQFIVDPIQGGAGTSINMNANEVIANRALELMGE 121
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
RIE D GE ++P D YYG QT+R+T NFPI G R+ +I ++G +KK+AA N E
Sbjct: 6 RIEKDFLGEKEIPKDAYYGVQTIRATENFPITG--YRIHPELIKSLGIVKKSAALANMEV 63
Query: 131 G-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
G LD +V I KAADEVI GK + + F + Q G+GT NMN NEVI+NRA+E++G+
Sbjct: 64 GLLDKEVGQYIVKAADEVIEGK-WNDQFIVDPIQGGAGTSINMNANEVIANRALELMGE 121
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 78/151 (51%), Gaps = 19/151 (12%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQV 126
S+ RIE D G +VP D YYG T+R+ NF I + M +KKAAA
Sbjct: 2 SNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMA 61
Query: 127 NKEF-GLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
NKE + VA+AI A DEV++ + FP+ ++Q G+GT NMNTNEV++N +E+
Sbjct: 62 NKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL 121
Query: 186 LGKNTVLGWFSQNGERLLFLPIADFWQLLNP 216
+G Q GE +Q LNP
Sbjct: 122 MGH--------QKGE----------YQYLNP 134
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE-TERMPLPVITAMGTLKKAAAQVNK 128
YRIE DT GE++VP D + AQT R+ NFPI ER I A+G LK A AQVNK
Sbjct: 29 YRIEHDTMGEVRVPKDALWRAQTQRAVENFPISFRGLERTQ---IRALGLLKAACAQVNK 85
Query: 129 EFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA 182
+ G LD + ADAI AA E+ GK + + FP+ ++QTGSGT +NMNTNEVI++ A
Sbjct: 86 DLGLLDPEKADAIIAAAGEIAEGK-HDDQFPIDVFQTGSGTSSNMNTNEVIASIA 139
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE-TERMPLPVITAMGTLKKAAAQ 125
S+ YRIE DT GE++VP + AQT R+ NFPI G ER I A+G LK A AQ
Sbjct: 8 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ---IRALGLLKGACAQ 64
Query: 126 VNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA 182
VN + GL A AA I+ + + FP+ ++QTGSGT +NMNTNEVI++ A
Sbjct: 65 VNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA 121
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE-TERMPLPVITAMGTLKKAAAQ 125
S+ YRIE DT GE++VP + AQT R+ NFPI G ER I A+G LK A AQ
Sbjct: 7 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ---IRALGLLKGACAQ 63
Query: 126 VNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA 182
VN + GL A AA I+ + + FP+ ++QTGSGT +NMNTNEVI++ A
Sbjct: 64 VNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA 120
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 57 KTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE-TERMPLPVITA 115
K + V S+ YRIE DT GE++VP + AQT R+ NFPI G ER I A
Sbjct: 19 KAGSMAVDADSANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ---IRA 75
Query: 116 MGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTN 175
+G LK A AQVN + GL A AA I+ + + FP+ ++QTGSGT +NMNTN
Sbjct: 76 LGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTN 135
Query: 176 EVISNRA 182
EVI++ A
Sbjct: 136 EVIASIA 142
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE-TERMPLPVITAMGTLKKAAAQ 125
S+ YRIE DT GE++VP + AQT R+ NFPI G ER I A+G LK A AQ
Sbjct: 7 SANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQ---IRALGLLKGACAQ 63
Query: 126 VNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA 182
VN + GL A AA I+ + + FP+ ++QTGSGT +NMNTNEVI++ A
Sbjct: 64 VNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA 120
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 4/116 (3%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE-TERMPLPVITAMGTLKKAAAQVNK 128
YRIE DT GE++VP + + AQT R+ NFPI G ER I A+G LK A AQVNK
Sbjct: 11 YRIEHDTMGEVRVPAEALWRAQTQRAVENFPISGRGLERTQ---IRALGLLKGACAQVNK 67
Query: 129 EFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIE 184
+ GL A AA + I+ + + FP+ ++QTGSGT +NMN NEVI++ A +
Sbjct: 68 DLGLLAAEKADAIIAAAQEIADGKHDDQFPIDVFQTGSGTSSNMNANEVIASIAAQ 123
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGET-ERMPLPVITAMGTLKKAAAQVNK 128
YRIE DT GE++VP + AQT R+ NFPI G ER I A+G LK A AQVN
Sbjct: 19 YRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERAQ---IRALGLLKGACAQVNM 75
Query: 129 EFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
+ GL A AA I+ + + FP+ ++QTGSGT +NMNTNEVI++ I G
Sbjct: 76 DLGLLAPEKAEAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIAS----IAGA 131
Query: 189 NTV 191
N V
Sbjct: 132 NGV 134
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 56 LKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITA 115
+ TL+ + S R E D+ GE +P D Y+G QT+R+ NF + ++ A
Sbjct: 9 MGTLEAQTQGPGSMTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRA 68
Query: 116 MGTLKKAAAQVNKEF-GLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNT 174
+ +KKAAA N + L AI A D++I G L E F + ++Q G+GT +NMN
Sbjct: 69 LAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDG-LLMEQFVVDVFQGGAGTSSNMNA 127
Query: 175 NEVISNRAIEILGK 188
NEVI+NRA+E LG+
Sbjct: 128 NEVIANRALEHLGR 141
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ GE +P D Y+G QT+R+ NF + ++ A+ +KKAAA N +
Sbjct: 7 RREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKL 66
Query: 131 -GLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
L AI A D++I G L E F + ++Q G+GT +NMN NEVI+NRA+E LG+
Sbjct: 67 RQLPEPKYAAIVAACDDIIDG-LLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGR 124
>pdb|1V4G|A Chain A, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|B Chain B, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|C Chain C, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|D Chain D, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
Length = 518
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 146 EVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGW 194
+ ISG Y P+ WQ SG + + E IS ++ GW
Sbjct: 144 QTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGW 192
>pdb|1VA6|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|1VA6|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|2D32|A Chain A, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|B Chain B, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|C Chain C, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|D Chain D, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D33|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|C Chain C, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|D Chain D, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
Length = 518
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 146 EVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGW 194
+ ISG Y P+ WQ SG + + E IS ++ GW
Sbjct: 144 QTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGW 192
>pdb|2HUC|A Chain A, Structural Studies Examining The Substrate Specificity
Profiles Of Pc-Plcbc Protein Variants
Length = 245
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 162 WQTGSGTQTNMNTNEVISNRAIEILGKNTVL 192
W G + +N++ I NRAI+I+ +NT L
Sbjct: 1 WSAGDKHKEGVNSHLWIVNRAIDIMSRNTTL 31
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 133 DAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG----K 188
DA + + +++ + EH P+ IW T S T + T IS+ I +G +
Sbjct: 24 DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLTKADISSDQIAAIGITNQR 83
Query: 189 NTVLGWFSQNGE 200
T + W + G+
Sbjct: 84 ETTIVWEKETGK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,402,366
Number of Sequences: 62578
Number of extensions: 320042
Number of successful extensions: 728
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 39
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)