Query psy16748
Match_columns 291
No_of_seqs 193 out of 1138
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 20:58:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0114 FumC Fumarase [Energy 100.0 2E-65 4.4E-70 492.9 11.8 166 69-246 2-179 (462)
2 KOG1317|consensus 100.0 2.5E-61 5.4E-66 458.9 12.7 169 68-246 26-204 (487)
3 COG1027 AspA Aspartate ammonia 100.0 8.9E-59 1.9E-63 446.7 11.9 165 68-245 2-180 (471)
4 PRK12425 fumarate hydratase; P 100.0 3.4E-47 7.4E-52 368.3 11.5 164 70-245 2-177 (464)
5 PRK14515 aspartate ammonia-lya 100.0 1.3E-45 2.7E-50 359.3 12.4 165 68-245 9-185 (479)
6 PLN00134 fumarate hydratase; P 100.0 9.6E-39 2.1E-43 308.8 12.3 159 77-245 1-171 (458)
7 PRK13353 aspartate ammonia-lya 100.0 2.9E-37 6.3E-42 299.2 12.3 165 68-245 3-179 (473)
8 TIGR00979 fumC_II fumarate hyd 100.0 7.1E-37 1.5E-41 295.9 12.4 164 70-245 1-176 (458)
9 PRK12273 aspA aspartate ammoni 100.0 8.2E-31 1.8E-35 254.3 11.6 165 68-245 3-181 (472)
10 TIGR00839 aspA aspartate ammon 100.0 2.3E-30 5E-35 251.7 11.9 164 71-245 1-177 (468)
11 cd01357 Aspartase Aspartase. T 100.0 3.7E-30 8E-35 248.3 11.4 162 71-245 1-174 (450)
12 PRK00485 fumC fumarate hydrata 100.0 1.8E-29 4E-34 244.0 12.2 165 69-245 3-179 (464)
13 cd01362 Fumarase_classII Class 99.9 2.8E-27 6.1E-32 228.9 12.0 163 71-245 1-175 (455)
14 cd01596 Aspartase_like asparta 99.9 1.8E-21 4E-26 188.6 11.6 162 71-245 1-174 (450)
15 PRK00855 argininosuccinate lya 99.7 2E-17 4.3E-22 159.8 7.5 139 84-245 3-149 (459)
16 PF00206 Lyase_1: Lyase; Inte 99.5 6.2E-15 1.3E-19 135.3 -0.9 143 78-245 1-150 (312)
17 PRK09053 3-carboxy-cis,cis-muc 99.4 2.9E-13 6.2E-18 131.0 6.5 130 86-245 10-146 (452)
18 TIGR02426 protocat_pcaB 3-carb 99.3 7.6E-12 1.6E-16 117.3 7.3 129 86-245 4-137 (338)
19 TIGR00838 argH argininosuccina 99.0 4.6E-10 1E-14 108.8 6.6 120 107-245 22-145 (455)
20 PLN02646 argininosuccinate lya 99.0 4.9E-10 1.1E-14 110.1 5.9 138 86-245 17-161 (474)
21 cd01359 Argininosuccinate_lyas 99.0 6.2E-10 1.3E-14 106.9 5.6 120 109-245 5-125 (435)
22 PRK05975 3-carboxy-cis,cis-muc 99.0 1.1E-09 2.4E-14 103.7 7.0 128 87-245 14-146 (351)
23 cd01597 pCLME prokaryotic 3-ca 98.8 3.9E-09 8.5E-14 101.6 3.7 115 109-245 17-137 (437)
24 cd01334 Lyase_I Lyase class I 98.6 7.8E-08 1.7E-12 89.0 6.2 117 113-245 1-118 (325)
25 PRK04833 argininosuccinate lya 98.3 2.8E-06 6E-11 83.3 8.1 108 119-245 36-147 (455)
26 PRK08540 adenylosuccinate lyas 97.6 4.4E-05 9.5E-10 74.4 3.8 131 83-245 5-141 (449)
27 PRK08470 adenylosuccinate lyas 96.7 0.0041 8.9E-08 61.1 7.0 111 109-245 16-132 (442)
28 cd01360 Adenylsuccinate_lyase_ 95.9 0.0085 1.8E-07 57.7 4.3 114 109-245 13-129 (387)
29 PRK06390 adenylosuccinate lyas 95.3 0.014 3.1E-07 57.4 3.2 136 82-245 4-140 (451)
30 cd01595 Adenylsuccinate_lyase_ 95.1 0.017 3.6E-07 55.4 3.0 120 109-245 7-127 (381)
31 PRK12308 bifunctional arginino 95.1 0.074 1.6E-06 54.1 7.8 114 113-245 25-147 (614)
32 TIGR00928 purB adenylosuccinat 95.0 0.056 1.2E-06 52.8 6.5 128 85-245 2-135 (435)
33 PRK02186 argininosuccinate lya 92.1 0.24 5.3E-06 52.4 5.5 143 84-245 411-554 (887)
34 PRK06705 argininosuccinate lya 91.2 0.82 1.8E-05 46.2 7.9 117 109-245 34-154 (502)
35 PRK07492 adenylosuccinate lyas 86.5 1.7 3.6E-05 43.2 6.2 128 87-245 4-135 (435)
36 cd01598 PurB PurB_like adenylo 78.6 3.8 8.2E-05 40.8 5.3 119 109-245 7-140 (425)
37 PRK07380 adenylosuccinate lyas 63.1 17 0.00036 36.2 5.8 126 87-245 4-132 (431)
38 COG0165 ArgH Argininosuccinate 56.2 34 0.00075 35.2 6.7 131 107-257 26-162 (459)
39 TIGR02098 MJ0042_CXXC MJ0042 f 41.5 13 0.00027 24.6 0.8 16 1-16 1-16 (38)
40 cd01594 Lyase_I_like Lyase cla 38.4 53 0.0012 28.3 4.3 62 174-245 16-81 (231)
41 PRK09285 adenylosuccinate lyas 37.1 47 0.001 33.5 4.3 119 110-245 30-162 (456)
42 PRK06389 argininosuccinate lya 35.3 89 0.0019 31.7 5.9 111 107-238 26-137 (434)
43 PF13248 zf-ribbon_3: zinc-rib 33.1 21 0.00046 22.4 0.8 14 1-14 1-14 (26)
44 PF00730 HhH-GPD: HhH-GPD supe 32.5 44 0.00096 25.8 2.7 31 130-162 48-78 (108)
45 PF05321 HHA: Haemolysin expre 32.2 47 0.001 25.5 2.6 31 132-163 23-57 (57)
46 COG0122 AlkA 3-methyladenine D 31.9 1E+02 0.0022 29.3 5.4 42 129-182 160-201 (285)
47 PF14149 YhfH: YhfH-like prote 31.0 9.5 0.00021 26.9 -1.1 10 4-13 15-24 (37)
48 TIGR01206 lysW lysine biosynth 30.7 28 0.0006 26.0 1.2 15 1-15 1-15 (54)
49 PF13240 zinc_ribbon_2: zinc-r 29.1 22 0.00048 22.2 0.4 10 4-13 1-10 (23)
50 PF13717 zinc_ribbon_4: zinc-r 28.4 22 0.00047 24.1 0.2 16 1-16 1-16 (36)
51 COG0777 AccD Acetyl-CoA carbox 27.1 58 0.0013 32.0 2.9 36 127-167 132-168 (294)
52 PF10925 DUF2680: Protein of u 27.0 2.6E+02 0.0057 21.0 5.9 39 111-149 11-50 (59)
53 PLN02848 adenylosuccinate lyas 26.0 1.2E+02 0.0027 30.7 5.2 55 83-145 14-75 (458)
54 cd02661 Peptidase_C19E A subfa 25.5 37 0.0008 29.9 1.2 22 4-25 184-211 (304)
55 cd02659 peptidase_C19C A subfa 24.7 39 0.00084 30.8 1.3 22 3-24 172-199 (334)
56 PRK00392 rpoZ DNA-directed RNA 24.7 75 0.0016 23.6 2.6 43 110-152 15-58 (69)
57 PF07754 DUF1610: Domain of un 23.4 34 0.00075 22.0 0.5 9 5-13 1-9 (24)
58 PF09963 DUF2197: Uncharacteri 22.4 37 0.00079 25.9 0.5 42 1-57 1-42 (56)
59 PRK12906 secA preprotein trans 21.6 1.6E+02 0.0036 32.3 5.4 70 106-187 56-142 (796)
60 PF02022 Integrase_Zn: Integra 21.6 56 0.0012 23.0 1.3 18 128-145 17-34 (40)
61 smart00132 LIM Zinc-binding do 21.6 52 0.0011 20.4 1.1 26 4-29 1-29 (39)
62 PRK10945 gene expression modul 21.1 76 0.0017 25.4 2.1 31 132-163 35-69 (72)
63 cd04755 Commd7 COMM_Domain con 20.8 1.7E+02 0.0036 26.6 4.5 54 90-146 30-97 (180)
64 PF08209 Sgf11: Sgf11 (transcr 20.5 16 0.00034 25.0 -1.6 18 4-21 6-23 (33)
65 PF01471 PG_binding_1: Putativ 20.1 56 0.0012 22.7 1.1 26 77-102 15-40 (57)
No 1
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=2e-65 Score=492.88 Aligned_cols=166 Identities=51% Similarity=0.702 Sum_probs=161.1
Q ss_pred CcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHH
Q psy16748 69 GYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEV 147 (291)
Q Consensus 69 ~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEI 147 (291)
++|+|+|+||+++||+|+|||+|||||++||+||| ++||.++|+||+++|||||+||.++| ||++++++|++|||||
T Consensus 2 ~~R~E~Dt~G~i~Vpad~~wgAQTqRs~~nF~ig~--~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev 79 (462)
T COG0114 2 TYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGG--EKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEV 79 (462)
T ss_pred CcccccccCccccccHHHHHHHHHHHHHhcCCccc--ccCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999997 78999999999999999999999999 9999999999999999
Q ss_pred HcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhch
Q psy16748 148 ISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNP 216 (291)
Q Consensus 148 i~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~ 216 (291)
++|+| +|+|||+|||||||||+|||+||||||||+|++|++.| |++|||||+|||+||||++.++.++
T Consensus 80 ~~Gk~-d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~ 158 (462)
T COG0114 80 LAGKH-DDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNR 158 (462)
T ss_pred HcCcc-cCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999998777 9999999999999999999999999
Q ss_pred hhhhcccccchhhHhhhhhccCCCchhhcc
Q psy16748 217 YLDRRNKKNVDENVLNLSSAGSSDSEEGEE 246 (291)
Q Consensus 217 ~~~r~~~~~~~~~~~~l~~~~~~~~e~~~~ 246 (291)
+ .|+|.+|.++|..|+++++.
T Consensus 159 L---------iPaL~~L~~~L~~Ka~~~~~ 179 (462)
T COG0114 159 L---------IPALKHLIKTLAAKAEEFAD 179 (462)
T ss_pred h---------HHHHHHHHHHHHHHHHHHhh
Confidence 9 77999999999999999653
No 2
>KOG1317|consensus
Probab=100.00 E-value=2.5e-61 Score=458.87 Aligned_cols=169 Identities=57% Similarity=0.793 Sum_probs=165.2
Q ss_pred CCcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHHHHHH
Q psy16748 68 SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEV 147 (291)
Q Consensus 68 ~~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elGLd~ekA~AI~~AcdEI 147 (291)
.++|+|+|++|+++||+|+|||+||+|++.||+|||..+|||.++|+||+.+|||||.+|.++|||+.+++||.+|||||
T Consensus 26 ~~fR~E~DtfGe~~VP~DkyyGAQT~Rs~~NF~IGg~~ERMP~pii~AfGiLKkaaA~vN~~~GLDpkis~Ai~~AadeV 105 (487)
T KOG1317|consen 26 SSFRTERDTFGEIEVPADKYYGAQTQRSLQNFKIGGERERMPEPIIQAFGILKKAAAEVNQEYGLDPKISKAISQAADEV 105 (487)
T ss_pred cchhhhccccCcccccchhhhhHHHHHHhhccccCCccccCchHHHHHHHHHHHHHHHHhHhhCCChHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC----------CCcccCCCcccccchhhHHHHhhchh
Q psy16748 148 ISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV----------LGWFSQNGERLLFLPIADFWQLLNPY 217 (291)
Q Consensus 148 i~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g----------N~~qSsNdtfpt~mhia~~~e~~~~~ 217 (291)
++||+ +|||||.+||+|||||+|||+||||+|||+|+||++.| |++|||||||||+||||+..|+.+++
T Consensus 106 ~~GKL-~dhFPLvvwQTGSGTQsNMN~NEVIsNrAieilGg~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~L 184 (487)
T KOG1317|consen 106 ASGKL-NDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGKLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEINSRL 184 (487)
T ss_pred hcCcc-cccCceeEEecCCCccccCcHHHHHHHHHHHHhcccccCcccCCccccccccccCCccchHHHHHHHHHHHHhh
Confidence 99999 99999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhhcccccchhhHhhhhhccCCCchhhcc
Q psy16748 218 LDRRNKKNVDENVLNLSSAGSSDSEEGEE 246 (291)
Q Consensus 218 ~~r~~~~~~~~~~~~l~~~~~~~~e~~~~ 246 (291)
.|.|.+|..+|.+||+|++.
T Consensus 185 ---------~P~l~~L~~aL~aKs~Efkd 204 (487)
T KOG1317|consen 185 ---------IPALTNLRDALEAKSKEFKD 204 (487)
T ss_pred ---------hHHHHHHHHHHHhhhHHHHH
Confidence 67999999999999999764
No 3
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-59 Score=446.72 Aligned_cols=165 Identities=41% Similarity=0.566 Sum_probs=156.8
Q ss_pred CCcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCC--HHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHH
Q psy16748 68 SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMP--LPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAA 144 (291)
Q Consensus 68 ~~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP--~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~Ac 144 (291)
+.+|+|+|.+|+.+||+|+|||+||.||++||+||| .++. |+||+|+++||||||+||.++| ||+++++||++||
T Consensus 2 ~~~R~E~D~lGe~~ip~evYyGI~TlRA~eNF~Is~--~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~AC 79 (471)
T COG1027 2 TDMRIERDLLGEREIPAEVYYGIHTLRAVENFPISG--LKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKAC 79 (471)
T ss_pred CcchhhhhhcccccCcchhhhhhHHHHHHhcCCCcC--CcccccHHHHHHHHHHHHHHHHhhhhhCCCCHHHHHHHHHHH
Confidence 469999999999999999999999999999999998 5666 9999999999999999999999 9999999999999
Q ss_pred HHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHh
Q psy16748 145 DEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQL 213 (291)
Q Consensus 145 dEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~ 213 (291)
|||++|++ .||||+|+||||+|||+|||+||||||||+|+||++|| |++||+||.|||+++|+.+.-+
T Consensus 80 Deil~Gk~-~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l 158 (471)
T COG1027 80 DEILDGKC-HDQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSL 158 (471)
T ss_pred HHHHcCcc-ccccceeccccCCCccccccHHHHHHHHHHHHhcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999 9999999999999999988776
Q ss_pred hchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 214 LNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 214 ~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.. + ..++..|++++..|++||.
T Consensus 159 ~~-L---------~~al~~L~~af~~Ka~EF~ 180 (471)
T COG1027 159 RK-L---------IDALEDLIEAFERKAKEFA 180 (471)
T ss_pred HH-H---------HHHHHHHHHHHHHHHHHHh
Confidence 65 5 4589999999999999975
No 4
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=3.4e-47 Score=368.26 Aligned_cols=164 Identities=45% Similarity=0.623 Sum_probs=153.9
Q ss_pred cccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHH
Q psy16748 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVI 148 (291)
Q Consensus 70 ~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi 148 (291)
+|+|+|+||+++||+|+|||+||+||++||+||| +++|++||+||++||+|+|.+|.+.| |+++.+++|++||+||+
T Consensus 2 ~r~e~d~~g~~~~p~~~~~g~~t~ra~~nf~~~~--~~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~al~ei~ 79 (464)
T PRK12425 2 SRTETDSLGPIEVPEDAYWGAQTQRSLINFAIGK--ERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVL 79 (464)
T ss_pred CCcCcccCCCCCCcccccchHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999997 79999999999999999999999999 99999999999999999
Q ss_pred cCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhchh
Q psy16748 149 SGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNPY 217 (291)
Q Consensus 149 ~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~~ 217 (291)
+|++ +++||+|+||+|+||++|||+||||+|||.|++|++.| |.++|+||.+||++++.....+...+
T Consensus 80 ~~~~-~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l 158 (464)
T PRK12425 80 DGQH-DDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQL 158 (464)
T ss_pred cCcc-cCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999997544 69999999999999998887775556
Q ss_pred hhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 218 LDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 218 ~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..++++.+
T Consensus 159 ---------~~~L~~l~~~L~~~A~~~~ 177 (464)
T PRK12425 159 ---------LPAIAELSGGLAEQSARHA 177 (464)
T ss_pred ---------HHHHHHHHHHHHHHHHHhc
Confidence 5688999999998888854
No 5
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=1.3e-45 Score=359.33 Aligned_cols=165 Identities=38% Similarity=0.490 Sum_probs=154.1
Q ss_pred CCcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHH
Q psy16748 68 SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADE 146 (291)
Q Consensus 68 ~~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdE 146 (291)
..+|+|+|++|+++||+++|||+||+||++||+|+| .++|++||+|++.||+|+|.+|.+.| |+++.+++|++||+|
T Consensus 9 ~~~r~e~d~~g~~~~p~~~~~g~~t~ra~~~f~~~~--~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~al~e 86 (479)
T PRK14515 9 NGVRIEKDFLGEKEVPNYAYYGVQTMRAVENFPITG--YKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAAQE 86 (479)
T ss_pred CCCccccccCCCCCCcccccchHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999986 79999999999999999999999999 999999999999999
Q ss_pred HHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhc
Q psy16748 147 VISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLN 215 (291)
Q Consensus 147 Ii~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~ 215 (291)
|++|++ +++||+|+||+|+|||+|||+||||+|+++|++|+.+| |++||+||.+||++++.....+.
T Consensus 87 i~~~~~-~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~- 164 (479)
T PRK14515 87 ILDGKW-HDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALE- 164 (479)
T ss_pred HHcCcc-cCCCCCCcccCCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHH-
Confidence 999999 99999999999999999999999999999999996544 69999999999999988877655
Q ss_pred hhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 216 PYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 216 ~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+ .+.|..|.++|..++++.+
T Consensus 165 ~l---------~~~L~~L~~~L~~~A~~~~ 185 (479)
T PRK14515 165 GL---------LQTMGYMHDVFELKAEQFD 185 (479)
T ss_pred HH---------HHHHHHHHHHHHHHHHHhc
Confidence 44 6788999999999888865
No 6
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=9.6e-39 Score=308.80 Aligned_cols=159 Identities=51% Similarity=0.686 Sum_probs=146.3
Q ss_pred CCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCC
Q psy16748 77 FGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAE 155 (291)
Q Consensus 77 LGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~d 155 (291)
+|+++||+|+|||+||+||++||+|||...++|++||+|++.||+|+|++|.+.| |+++.+++|++||+||.+|++ .+
T Consensus 1 ~g~~~~p~~~~~g~~t~ra~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~-~~ 79 (458)
T PLN00134 1 MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKL-DD 79 (458)
T ss_pred CCCccCCcccchhHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcc-cC
Confidence 6999999999999999999999999986689999999999999999999999999 999999999999999999999 99
Q ss_pred CcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhchhhhhcccc
Q psy16748 156 HFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKK 224 (291)
Q Consensus 156 qFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~ 224 (291)
+||+|+||||+||++|||+||||+|+++|++|.+.| |.++||||.+||++.+....+....+
T Consensus 80 ~f~~~~~~~g~g~~~~~~v~evie~~l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l------- 152 (458)
T PLN00134 80 HFPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRL------- 152 (458)
T ss_pred CccccccccCCcccccCcHHHHHHHHHHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHH-------
Confidence 999999999999999999999999999999996555 38999999999999888776655555
Q ss_pred cchhhHhhhhhccCCCchhhc
Q psy16748 225 NVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 225 ~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..++++.+
T Consensus 153 --~~~l~~l~~~L~~~A~~~~ 171 (458)
T PLN00134 153 --IPALKELHESLRAKSFEFK 171 (458)
T ss_pred --HHHHHHHHHHHHHHHHHhc
Confidence 5577888999988888754
No 7
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=2.9e-37 Score=299.24 Aligned_cols=165 Identities=39% Similarity=0.520 Sum_probs=152.1
Q ss_pred CCcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHH
Q psy16748 68 SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADE 146 (291)
Q Consensus 68 ~~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdE 146 (291)
..||+|+|++|+++||.++|||+||+||++||+|+| ++||+++|+|++.||+|+|.+|.++| |+++.+++|.+||++
T Consensus 3 ~~~r~~~d~~g~~~~~~~~~~g~~t~r~~~~f~~~~--~~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~ 80 (473)
T PRK13353 3 KNMRIEHDLLGEKEVPAEAYYGIQTLRAVENFPITG--YKIHPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDE 80 (473)
T ss_pred CCcccccccCCCCCCcccccchHHHHHHHhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999997 79999999999999999999999999 999999999999999
Q ss_pred HHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCC-----------CCCcccCCCcccccchhhHHHHhhc
Q psy16748 147 VISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNT-----------VLGWFSQNGERLLFLPIADFWQLLN 215 (291)
Q Consensus 147 Ii~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~-----------gN~~qSsNdtfpt~mhia~~~e~~~ 215 (291)
|++|.+ .|+||++++|+|+||++|||+||||+|++.|++|+.. -+.++|+||.++|++++...-.+.
T Consensus 81 i~~~~~-~d~f~~~~~~~~~~~~~~~n~~~vi~~~l~e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~- 158 (473)
T PRK13353 81 ILAGKL-HDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLE- 158 (473)
T ss_pred HHhccc-cCCCCcchhhccccchhcchhhHHHHHHHHHHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHH-
Confidence 999988 8999999999999999999999999999999998532 389999999999999988776554
Q ss_pred hhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 216 PYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 216 ~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+ .+.|..|.++|..++++.+
T Consensus 159 ~l---------~~~L~~l~~~L~~~A~~~~ 179 (473)
T PRK13353 159 GL---------LAAMGALQDVFEEKAAEFD 179 (473)
T ss_pred HH---------HHHHHHHHHHHHHHHHHhc
Confidence 44 5688899999988888754
No 8
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=7.1e-37 Score=295.85 Aligned_cols=164 Identities=54% Similarity=0.740 Sum_probs=151.1
Q ss_pred cccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHH
Q psy16748 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVI 148 (291)
Q Consensus 70 ~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi 148 (291)
||+|+|++|+++||+++|||+||+||++||+|+| .++|++||+|++.||+|+|++|.++| ||++.+++|.+||++|.
T Consensus 1 ~r~e~d~~g~~~~p~~~~~g~~t~r~~~~f~~~~--~~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~ 78 (458)
T TIGR00979 1 FRIEKDSMGEIQVPADKYWGAQTQRSLENFKIGT--EKMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEIL 78 (458)
T ss_pred CCCccccCCCCCCcccchhhHHHHHHHhcCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999997 69999999999999999999999999 99999999999999999
Q ss_pred cCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhchh
Q psy16748 149 SGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNPY 217 (291)
Q Consensus 149 ~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~~ 217 (291)
+|.+ +++||++++|+|+||++|||+||||++++.|++|++.| |.++||||.+||++.+.....+...+
T Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l 157 (458)
T TIGR00979 79 AGKL-DDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQL 157 (458)
T ss_pred hccc-cCCCceecccccccccccccHHHHHHHHHHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 9998 99999999999999999999999999999999985443 57999999999999888776664455
Q ss_pred hhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 218 LDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 218 ~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..++++.+
T Consensus 158 ---------~~~l~~l~~~L~~~A~~~~ 176 (458)
T TIGR00979 158 ---------IPALENLKKTLDAKSKEFA 176 (458)
T ss_pred ---------HHHHHHHHHHHHHHHHHcc
Confidence 6688889999988888754
No 9
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.97 E-value=8.2e-31 Score=254.34 Aligned_cols=165 Identities=42% Similarity=0.562 Sum_probs=147.6
Q ss_pred CCcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCC--HHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHH
Q psy16748 68 SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMP--LPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAA 144 (291)
Q Consensus 68 ~~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP--~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~Ac 144 (291)
+++|+|+|++|+++||.++|||+||+||++||+|+| +++| +.+|+++..|++|.|.++.++| |+++.+++|.+||
T Consensus 3 ~~~r~~~~~~~~~~~~~~~~~~~~t~~~~~~f~~~~--~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al 80 (472)
T PRK12273 3 MNTRIEKDLLGEREVPADAYYGIHTLRAVENFPISG--VKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAAC 80 (472)
T ss_pred CCcccccccCCCcCCcccccchHHHHHHHHcCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 459999999999999999999999999999999997 5777 9999999999999999999999 9999999999999
Q ss_pred HHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHh
Q psy16748 145 DEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQL 213 (291)
Q Consensus 145 dEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~ 213 (291)
++|.++.. .++|+++.+|+|++++.|||+|+||++++++.+|...| |.+.|+||.++|++.+...-.+
T Consensus 81 ~~i~~~~~-~~~~~~~~~~~~~~e~~~~~v~~~i~~~~~e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l 159 (472)
T PRK12273 81 DEILAGKL-HDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSL 159 (472)
T ss_pred HHHHhccc-cCCcccchhhccccchhhhHHHHHHHHHHHHHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 99999888 89999999999999999999999999998898873222 3889999999999987766555
Q ss_pred hchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 214 LNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 214 ~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
. .+ .+.|..|.++|..+.++.+
T Consensus 160 ~-~l---------~~~L~~l~~~L~~~A~~~~ 181 (472)
T PRK12273 160 R-KL---------LDALEQLQEAFEAKAKEFA 181 (472)
T ss_pred H-HH---------HHHHHHHHHHHHHHHHHcc
Confidence 3 34 5678888999988887754
No 10
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.97 E-value=2.3e-30 Score=251.67 Aligned_cols=164 Identities=37% Similarity=0.492 Sum_probs=144.2
Q ss_pred ccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHc
Q psy16748 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVIS 149 (291)
Q Consensus 71 RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~ 149 (291)
|||.|++|+++||+|+|||+||+||++||+++|...++++.+|+++..|++|.|.+|.++| ++++.+++|.+||+++++
T Consensus 1 r~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al~~~~d 80 (468)
T TIGR00839 1 RIEEDLLGEREVPADAYYGIHTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEILN 80 (468)
T ss_pred CCCcccCCCCCCcccccchHHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999984334449999999999999999999999 999999999999999886
Q ss_pred -CCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhchh
Q psy16748 150 -GKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNPY 217 (291)
Q Consensus 150 -Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~~ 217 (291)
|++ .+.|+++.+++++||++|||+||||+++..+.+|++.| |.+.||||..+|++.+...-.+ ..+
T Consensus 81 ~~~~-~~~~~l~~~~~~~g~~~~~~v~~vie~~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l-~~l 158 (468)
T TIGR00839 81 NGKC-HDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSL-IKL 158 (468)
T ss_pred cccc-cccccccHHHccCccccccchHHHHHHHHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHH-HHH
Confidence 888 88999999999999999999999999999999885444 5799999999999977654433 233
Q ss_pred hhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 218 LDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 218 ~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..+.++-+
T Consensus 159 ---------~~~l~~l~~~L~~~A~~~~ 177 (468)
T TIGR00839 159 ---------VDAINQLRDGFEQKAKEFA 177 (468)
T ss_pred ---------HHHHHHHHHHHHHHHHHcc
Confidence 5677888888887777744
No 11
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.96 E-value=3.7e-30 Score=248.30 Aligned_cols=162 Identities=44% Similarity=0.575 Sum_probs=145.8
Q ss_pred ccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHc
Q psy16748 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVIS 149 (291)
Q Consensus 71 RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~ 149 (291)
|+|+|++|+++||.++|||+||+||+.||||+| ++++..+|+++..|++|.|.++.++| ++++.+++|.+||++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~t~~~~~~~~~~~--~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~ 78 (450)
T cd01357 1 RIEHDLLGEREVPADAYYGIQTLRALENFPISG--LKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIA 78 (450)
T ss_pred CCCcccCCCcCCcccccchHHHHHHHHcCCCCC--CCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999997 79999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCC-----------CCCcccCCCcccccchhhHHHHhhchhh
Q psy16748 150 GKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNT-----------VLGWFSQNGERLLFLPIADFWQLLNPYL 218 (291)
Q Consensus 150 Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~-----------gN~~qSsNdtfpt~mhia~~~e~~~~~~ 218 (291)
+.+ .++||++.+|+|+|+++|||+||||++++.|.+|... -+.++|+||.++|++.+...-.+. .+
T Consensus 79 ~~~-~d~~~~~~~~~~~~~~~~~~~~~vi~~~~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~-~l- 155 (450)
T cd01357 79 GKL-HDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLR-KL- 155 (450)
T ss_pred ccc-cCCCccchhhccccchhhhhHhHHHHHHHHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHH-HH-
Confidence 887 8999999999999999999999999999888887332 258999999999999887765544 33
Q ss_pred hhcccccchhhHhhhhhccCCCchhhc
Q psy16748 219 DRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 219 ~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..+.++-+
T Consensus 156 --------~~~L~~l~~~L~~~A~~~~ 174 (450)
T cd01357 156 --------LDALAALQEAFQAKAREFA 174 (450)
T ss_pred --------HHHHHHHHHHHHHHHHHcc
Confidence 5677888888877777643
No 12
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.96 E-value=1.8e-29 Score=244.01 Aligned_cols=165 Identities=51% Similarity=0.681 Sum_probs=148.2
Q ss_pred CcccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHH
Q psy16748 69 GYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEV 147 (291)
Q Consensus 69 ~~RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEI 147 (291)
+||+|+|++|+++||+++|||++|.|+++||++|+ .++++.+|+++..|++|.|.+|.++| |+++.+++|.+||++|
T Consensus 3 ~~r~e~d~~g~~~~~~~~l~g~~~~~~~~~f~~s~--~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i 80 (464)
T PRK00485 3 ETRIEKDSMGEVEVPADALWGAQTQRSLENFPIGG--ERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADEV 80 (464)
T ss_pred CcccccccCCCcCCccccccchhhHHHHhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999996 68999999999999999999999999 9999999999999999
Q ss_pred HcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCC--------CC---CCcccCCCcccccchhhHHHHhhch
Q psy16748 148 ISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKN--------TV---LGWFSQNGERLLFLPIADFWQLLNP 216 (291)
Q Consensus 148 i~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~--------~g---N~~qSsNdtfpt~mhia~~~e~~~~ 216 (291)
.++.+ +++||++++|+|.+|++|||+||||++++.+..|+. .+ |.++|+||..+|++.+...-.+...
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~ 159 (464)
T PRK00485 81 IAGKH-DDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVER 159 (464)
T ss_pred HhCcc-ccCCCcchhhccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 98888 999999999999999999999999999999988854 22 6999999999999977655444234
Q ss_pred hhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 217 YLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 217 ~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+ .+.|..|.++|..++++.+
T Consensus 160 l---------~~~l~~l~~~L~~~A~~~~ 179 (464)
T PRK00485 160 L---------LPALEHLRDTLAAKAEEFA 179 (464)
T ss_pred H---------HHHHHHHHHHHHHHHHHcC
Confidence 4 5677888899888888754
No 13
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.94 E-value=2.8e-27 Score=228.87 Aligned_cols=163 Identities=55% Similarity=0.721 Sum_probs=144.3
Q ss_pred ccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHc
Q psy16748 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVIS 149 (291)
Q Consensus 71 RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~ 149 (291)
|||+|.+|+++||+++|||+||+|+++||+||+ ..+++++|+++..|++|.|+++.++| ++++.+++|.+||++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~~~--~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al~~i~~ 78 (455)
T cd01362 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGG--ERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIA 78 (455)
T ss_pred CCCcccCCCcCCccccchhHHHHHHHhccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999997 58889999999999999999999999 999999999999999988
Q ss_pred CCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC-----------CCcccCCCcccccchhhHHHHhhchhh
Q psy16748 150 GKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV-----------LGWFSQNGERLLFLPIADFWQLLNPYL 218 (291)
Q Consensus 150 Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g-----------N~~qSsNdtfpt~mhia~~~e~~~~~~ 218 (291)
+.+ +++||+++++++++|.+|||+||||++++.+++|.+.| +.+.|+||-.+|++.+...-.+...+
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l- 156 (455)
T cd01362 79 GKL-DDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERL- 156 (455)
T ss_pred ccc-ccCCceehhhccccccccccHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHH-
Confidence 777 89999999999999999999999999999998874322 58999999999999776554443334
Q ss_pred hhcccccchhhHhhhhhccCCCchhhc
Q psy16748 219 DRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 219 ~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..++++.+
T Consensus 157 --------~~~l~~l~~~L~~~A~~~~ 175 (455)
T cd01362 157 --------LPALKHLIDALDAKADEFK 175 (455)
T ss_pred --------HHHHHHHHHHHHHHHHHcc
Confidence 4567788888877777754
No 14
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.86 E-value=1.8e-21 Score=188.57 Aligned_cols=162 Identities=50% Similarity=0.684 Sum_probs=139.0
Q ss_pred ccccccCCccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHc
Q psy16748 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVIS 149 (291)
Q Consensus 71 RiE~DsLGev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~ 149 (291)
|||+|.+|++++|+++|||+||.|++++|++++ .+++..+|+++..|+.|.|.++.+.| |+++.+++|.++|++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~i~~ 78 (450)
T cd01596 1 RIEKDSLGEVEVPADAYYGAQTQRALENFPISG--ERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIA 78 (450)
T ss_pred CCCcccCCCCCCcccccccHhHHHHHhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999999996 68999999999999999999999999 999999999999999998
Q ss_pred CCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCCC-----------CcccCCCcccccchhhHHHHhhchhh
Q psy16748 150 GKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVL-----------GWFSQNGERLLFLPIADFWQLLNPYL 218 (291)
Q Consensus 150 Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~gN-----------~~qSsNdtfpt~mhia~~~e~~~~~~ 218 (291)
+.+ ++.|+.++.++++++.+|||+++||++++.+.+|...|. .+-|+||--.|++-+.. .+-...+
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~l-r~~l~~l- 155 (450)
T cd01596 79 GKL-DDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAA-LALLERL- 155 (450)
T ss_pred Ccc-cCCCcccHHhccCcccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHH-HHHHHHH-
Confidence 877 999999999999999999999999999887877743332 57888988877763322 2222223
Q ss_pred hhcccccchhhHhhhhhccCCCchhhc
Q psy16748 219 DRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 219 ~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.|..|.++|..++++.+
T Consensus 156 --------~~~l~~l~~~L~~lA~~~~ 174 (450)
T cd01596 156 --------LPALEQLQDALDAKAEEFA 174 (450)
T ss_pred --------HHHHHHHHHHHHHHHHHhc
Confidence 5677788888877777644
No 15
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.70 E-value=2e-17 Score=159.85 Aligned_cols=139 Identities=19% Similarity=0.108 Sum_probs=121.9
Q ss_pred ccCccchh----hhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcc
Q psy16748 84 NDKYYGAQ----TVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFP 158 (291)
Q Consensus 84 ~daYYGaQ----TqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFP 158 (291)
.++|||.+ |.|+++||.++ ..+++++|+++..+|+|.|.+|.+.| |+++.+++|++||++|.++.. .++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~-~~~~~ 78 (459)
T PRK00855 3 SNKLWGGRFSEGPDELVERFTAS---ISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIE-AGKFE 78 (459)
T ss_pred cccccccCCCcchHHHHHHcccC---ccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcc-cCCcc
Confidence 35799999 99999999988 68899999999999999999999999 999999999999999999988 89999
Q ss_pred cccccCCchhhcCCChHHHHHHHHHHHhCCCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhh
Q psy16748 159 LVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSS 235 (291)
Q Consensus 159 LdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~ 235 (291)
+++ +|+++||| |.++..+.+| +.| -.++|+||.++|++.+...-.+. .+ .+.|+.|.+
T Consensus 79 ~~~----~~~d~~~~----ie~~l~~~~g-~~g~~iH~g~SrnD~~~Ta~~L~~r~~l~-~l---------~~~L~~l~~ 139 (459)
T PRK00855 79 FSP----ELEDIHMA----IEARLTERIG-DVGGKLHTGRSRNDQVATDLRLYLRDEID-EI---------AELLLELQK 139 (459)
T ss_pred cCC----CCCcHHHH----HHHHHHHHhc-cccCcccCCCCHhhHHHHHHHHHHHHHHH-HH---------HHHHHHHHH
Confidence 997 88999988 6677777777 333 78899999999999887776654 44 568899999
Q ss_pred ccCCCchhhc
Q psy16748 236 AGSSDSEEGE 245 (291)
Q Consensus 236 ~~~~~~e~~~ 245 (291)
+|..++++.+
T Consensus 140 ~L~~~A~~~~ 149 (459)
T PRK00855 140 ALLDLAEEHA 149 (459)
T ss_pred HHHHHHHHcC
Confidence 9998888765
No 16
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.46 E-value=6.2e-15 Score=135.33 Aligned_cols=143 Identities=30% Similarity=0.309 Sum_probs=118.6
Q ss_pred CccccCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHc-CCCCCC
Q psy16748 78 GELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVIS-GKLYAE 155 (291)
Q Consensus 78 Gev~VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~-Gkl~~d 155 (291)
|..++|.+.||+++|.|+..+|.|.+ ..|++.+.+++|.| +.| ++++.+++|.+||++|++ +++ .+
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~-------~~~~~e~a~~~a~a----~~g~i~~~~a~~I~~a~~~i~~~~~~-~~ 68 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAE-------YDIRVEAALAKALA----EAGIIPKEAADAIVKALEEILEDGDL-DD 68 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHH----HTTSSTHHHHHHHHHHHHHHHHHTCT-HG
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeec-------cHHHHHHHHHHHHH----HhhcchHHHHHHHHHHHHHHHHhhcc-cc
Confidence 67899999999999999999998874 55777777777665 568 889999999999999997 998 88
Q ss_pred CcccccccCCchhhcCCChHHHHHHHHHHHhC---CC--CCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhH
Q psy16748 156 HFPLVIWQTGSGTQTNMNTNEVISNRAIEILG---KN--TVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENV 230 (291)
Q Consensus 156 qFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG---~~--~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~ 230 (291)
.|+++.++++.|+.+|+|++|+|+ |++| .. .-+.++||||-.+|++.+...-.+.+.+ .+.|
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~----e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l---------~~~l 135 (312)
T PF00206_consen 69 AFELDEIEEDIGHAVEANLNEVLG----ELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELL---------LERL 135 (312)
T ss_dssp HHHHCSCSSSHHHHHHHHHHHHHH----HHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHH---------HHHH
T ss_pred ccchhhhhccchhHHHHHHHHHhh----hhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHH---------HHHH
Confidence 999999999999999999999999 5555 11 2299999999999999887777776666 5577
Q ss_pred hhhhhccCCCchhhc
Q psy16748 231 LNLSSAGSSDSEEGE 245 (291)
Q Consensus 231 ~~l~~~~~~~~e~~~ 245 (291)
..|.++|..++++.+
T Consensus 136 ~~l~~~L~~~a~~~~ 150 (312)
T PF00206_consen 136 KALIDALAELAEEHK 150 (312)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888888887754
No 17
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.40 E-value=2.9e-13 Score=130.96 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=102.9
Q ss_pred CccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccC
Q psy16748 86 KYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQT 164 (291)
Q Consensus 86 aYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQg 164 (291)
.+||..-.|++ | | ++.+|+|+..||+|+|+||.++| +|++.+++|.+||++ ++|+++.||+
T Consensus 10 ~~~~~~~~~~i--~--s------~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~--------~~~d~~~~~~ 71 (452)
T PRK09053 10 LYFGSPAMRAI--F--S------DRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDA--------ERLDLDALAQ 71 (452)
T ss_pred hhcCCHHHHHH--c--C------cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccc--------cCCCHHHHHH
Confidence 37877766665 4 4 68999999999999999999999 999999999999986 5799999999
Q ss_pred CchhhcCCChHHHHHHHHHHHhC---CCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccC
Q psy16748 165 GSGTQTNMNTNEVISNRAIEILG---KNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGS 238 (291)
Q Consensus 165 GSGTSTNMNVNEVIANRA~EiLG---~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~ 238 (291)
|+||+.|..+.- +....- .+| ...+ +.++||||.+||++.+.....+ ..+ .+.|..|.++|.
T Consensus 72 ~~~~~~~~~~~l-v~~l~~-~~~~~~~~~~~~vH~G~SsnDi~~Ta~~l~lr~~l-~~l---------~~~l~~l~~~L~ 139 (452)
T PRK09053 72 AAALAGNLAIPL-VKQLTA-QVAARDAEAARYVHWGATSQDIIDTGLVLQLRDAL-DLL---------EPDLDRLCDALA 139 (452)
T ss_pred HHhhcCCchHHH-HHHHHH-HhcccCcchhccccCCCChhhhHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHH
Confidence 999999966554 332222 233 1212 9999999999999987754433 444 668899999998
Q ss_pred CCchhhc
Q psy16748 239 SDSEEGE 245 (291)
Q Consensus 239 ~~~e~~~ 245 (291)
.++++.+
T Consensus 140 ~~A~~~~ 146 (452)
T PRK09053 140 TLAARHR 146 (452)
T ss_pred HHHHHcc
Confidence 8888754
No 18
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.27 E-value=7.6e-12 Score=117.30 Aligned_cols=129 Identities=14% Similarity=0.057 Sum_probs=107.1
Q ss_pred CccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccC
Q psy16748 86 KYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQT 164 (291)
Q Consensus 86 aYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQg 164 (291)
..||....|++ | + ++.+|+++..|++|.|.+|.++| |+++.+++|.+||++| +.|++|.
T Consensus 4 ~~~~~~~~~~i--~--s------d~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~----------~~d~~~~ 63 (338)
T TIGR02426 4 GLFGDPAALEL--F--S------DRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAA----------APDLEAL 63 (338)
T ss_pred cccCCHHHHHH--c--C------CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccC----------CCCHHHH
Confidence 36777777776 3 4 58999999999999999999999 9999999999999875 3577999
Q ss_pred CchhhcCCCh-HHHHHHHHHHHhCCCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCC
Q psy16748 165 GSGTQTNMNT-NEVISNRAIEILGKNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSD 240 (291)
Q Consensus 165 GSGTSTNMNV-NEVIANRA~EiLG~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~ 240 (291)
|+||+.|+|. ++|+++++ |.+|.+.| ..++||||.++|++.+...-.+ ..+ .+.+..|.++|..+
T Consensus 64 ~~~~~~~~~~~~~~~~~l~-~~~g~~~g~~vH~G~S~nD~~~Ta~~L~lr~~l-~~l---------~~~l~~l~~~L~~~ 132 (338)
T TIGR02426 64 AHAAATAGNPVIPLVKALR-KAVAGEAARYVHRGATSQDVIDTSLMLQLRDAL-DLL---------LADLGRLADALADL 132 (338)
T ss_pred HhHHHhcCCcHHHHHHHHH-HHhCccccCcccCCCChhhhHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHH
Confidence 9999999997 89999999 77775444 8999999999999966554333 333 67888999999888
Q ss_pred chhhc
Q psy16748 241 SEEGE 245 (291)
Q Consensus 241 ~e~~~ 245 (291)
+++.+
T Consensus 133 A~~~~ 137 (338)
T TIGR02426 133 AARHR 137 (338)
T ss_pred HHHhC
Confidence 88755
No 19
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.01 E-value=4.6e-10 Score=108.81 Aligned_cols=120 Identities=18% Similarity=0.056 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHH
Q psy16748 107 RMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185 (291)
Q Consensus 107 ~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~Ei 185 (291)
....++++.-..+-+|=+.+..+.| |+++.+++|++||++|..+.. .++|+++++| +++|| +|.+++.|.
T Consensus 22 ~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~-~~~~~~~~~~----~d~~~----~ie~~l~e~ 92 (455)
T TIGR00838 22 SFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGR-EGPFILDPDD----EDIHM----AIERELIDR 92 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcc-cCCcCCCCCc----CcHHH----HHHHHHHHH
Confidence 3345777777789999999999999 999999999999999999998 8999999999 67777 899999999
Q ss_pred hCCCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 186 LGKNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 186 LG~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+|++.| ..++|+||.++|++.+...-.+. .+ .+.|..|.++|..++++.+
T Consensus 93 ~g~~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~-~l---------~~~L~~l~~~L~~~A~~~~ 145 (455)
T TIGR00838 93 VGEDLGGKLHTGRSRNDQVATDLRLYLRDHVL-EL---------AEALLDLQDALIELAEKHV 145 (455)
T ss_pred hCCCccCCccCCCChhhHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHcc
Confidence 985544 78999999999999877765554 34 5688899999988888754
No 20
>PLN02646 argininosuccinate lyase
Probab=98.99 E-value=4.9e-10 Score=110.08 Aligned_cols=138 Identities=19% Similarity=0.148 Sum_probs=107.4
Q ss_pred Cccch----hhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccc
Q psy16748 86 KYYGA----QTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLV 160 (291)
Q Consensus 86 aYYGa----QTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLd 160 (291)
++||. .+-+.+..|.-+ ..+..+++..-..+-+|.|.+|.+.| |+++.+++|++||++|.++.. .++|+
T Consensus 17 ~~w~~r~~~~~~~~~~~~~~s---~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~-~~~f~-- 90 (474)
T PLN02646 17 KLWGGRFEEGVTPAVEKFNES---ISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIE-AGKFE-- 90 (474)
T ss_pred hhhcCCCCCCccHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcc-cCCCc--
Confidence 46665 344556666322 44455677777778899999999999 999999999999999999888 88997
Q ss_pred cccCCchhhcCCChHHHHHHHHHHHhCC--CCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccC
Q psy16748 161 IWQTGSGTQTNMNTNEVISNRAIEILGK--NTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGS 238 (291)
Q Consensus 161 vfQgGSGTSTNMNVNEVIANRA~EiLG~--~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~ 238 (291)
||+|. +.+||| || ++..|++|. ++--.++|+||.++|++.+...-.+. .+ .+.|..|.++|.
T Consensus 91 -~~~~~-ed~h~~-iE---~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~lr~~l~-~l---------~~~L~~L~~~L~ 154 (474)
T PLN02646 91 -WRPDR-EDVHMN-NE---ARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAID-VI---------RKRIKTLQVALV 154 (474)
T ss_pred -CCCCC-CchHHH-HH---HHHHHHhchhhCcccCCCChhhHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHH
Confidence 88887 799999 65 667777772 22278999999999999887776553 34 568889999998
Q ss_pred CCchhhc
Q psy16748 239 SDSEEGE 245 (291)
Q Consensus 239 ~~~e~~~ 245 (291)
.++++..
T Consensus 155 ~~A~~~~ 161 (474)
T PLN02646 155 ELAEKNV 161 (474)
T ss_pred HHHHHcC
Confidence 8888754
No 21
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=98.97 E-value=6.2e-10 Score=106.89 Aligned_cols=120 Identities=20% Similarity=0.059 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhC
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG 187 (291)
.+.+|+++..|++|.|.+|.++| |+++.+++|.+||+++.++.. .++|+.+. +++..+||++++|..+.-+ .|
T Consensus 5 d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~-~~~~~~~~----~~~~~~~~~e~~l~~~~g~-~~ 78 (435)
T cd01359 5 DRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIE-AGAFELDP----EDEDIHMAIERRLIERIGD-VG 78 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcc-cCCccCCC----CCCcHHHHHHHHHHHHHHH-HH
Confidence 46889999999999999999999 999999999999999987755 78999986 6889999999999777632 23
Q ss_pred CCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 188 KNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 188 ~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+ .--.++||||.++|++.+...-.+. .+ .+.|..|..+|..++++.+
T Consensus 79 ~-~iH~G~SsnDi~~Ta~~L~lr~~l~-~l---------~~~l~~l~~~L~~~A~~~~ 125 (435)
T cd01359 79 G-KLHTGRSRNDQVATDLRLYLRDALL-EL---------LELLLDLQRALLDRAEEHA 125 (435)
T ss_pred h-hhhccCCHHhHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHcC
Confidence 2 2378999999999999887776664 34 5678889999988888754
No 22
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.96 E-value=1.1e-09 Score=103.71 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=103.0
Q ss_pred ccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCC
Q psy16748 87 YYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTG 165 (291)
Q Consensus 87 YYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgG 165 (291)
+||..-.|++ | | ...+|+++..|++|+|++|.++| ++++.+++|.+||+++ ..|+.+.+
T Consensus 14 ~~~~~~~~~~--~--s------~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~----------~~d~~~~~ 73 (351)
T PRK05975 14 LFGDDEIAAL--F--S------AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETF----------EPDLAALR 73 (351)
T ss_pred cCCCHHHHHH--c--C------cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccC----------CCCHHHHh
Confidence 6777666665 4 3 57889999999999999999999 9999999999999865 23567888
Q ss_pred chhhcC-CChHHHHHHHHHHHhCCCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCc
Q psy16748 166 SGTQTN-MNTNEVISNRAIEILGKNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDS 241 (291)
Q Consensus 166 SGTSTN-MNVNEVIANRA~EiLG~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~ 241 (291)
.+++.+ |++++++++++.+ +|++.+ +.++||||..+|++.+... +-...+ .+.|..|.++|..++
T Consensus 74 ~~~~~~g~~v~~~v~~l~~~-~g~~~~~~vH~G~TsnDi~dTa~~L~lr-~~l~~l---------~~~L~~l~~~L~~lA 142 (351)
T PRK05975 74 HATARDGVVVPALVRQLRAA-VGEEAAAHVHFGATSQDVIDTSLMLRLK-AASEIL---------AARLGALIARLDALE 142 (351)
T ss_pred hHHHhcCCcHHHHHHHHHHH-hCchhhCcccCCCChhhHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHH
Confidence 899888 9999999999876 564333 9999999999999976533 333344 667888899998888
Q ss_pred hhhc
Q psy16748 242 EEGE 245 (291)
Q Consensus 242 e~~~ 245 (291)
++.+
T Consensus 143 ~~~~ 146 (351)
T PRK05975 143 ATFG 146 (351)
T ss_pred HHhC
Confidence 8755
No 23
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=98.78 E-value=3.9e-09 Score=101.64 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHH-HH-HH
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNR-AI-EI 185 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANR-A~-Ei 185 (291)
++.+|+++..||+|.|.+|.++| |+.+.+++|.+||+++ +. + ++.++.+.|+.. |+|++.. ++ +.
T Consensus 17 ~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~---~~-~----~~~~~~~~~~~~----~~v~a~e~~l~e~ 84 (437)
T cd01597 17 DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVE---RL-D----LEALAEATARTG----HPAIPLVKQLTAA 84 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccc---CC-C----HHHHHHHHHHhC----CCcHHHHHHHHHH
Confidence 67999999999999999999999 9999999999999876 33 2 566888888884 4566555 44 56
Q ss_pred hCCCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 186 LGKNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 186 LG~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+|...| -.++|+||.++|++.+...-.+ ..+ .+.|..|.++|..++++.+
T Consensus 85 ~g~~~g~~lH~grSrnD~~~Ta~~l~lr~~l-~~l---------~~~l~~l~~~L~~~A~~~~ 137 (437)
T cd01597 85 CGDAAGEYVHWGATTQDIIDTALVLQLRDAL-DLL---------ERDLDALLDALARLAATHR 137 (437)
T ss_pred cCccccCeeecCccHhHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHhc
Confidence 664323 7899999999999987766555 344 6788999999988888754
No 24
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=98.59 E-value=7.8e-08 Score=89.01 Aligned_cols=117 Identities=32% Similarity=0.255 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC
Q psy16748 113 ITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV 191 (291)
Q Consensus 113 IrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g 191 (291)
|+++..|++|.|+++.++| ++++.+++|.++|+++..... ..+ .++++++...+|+++++|++++.+-.|+ .-
T Consensus 1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~-~~~----~~~~~~~~~~~~~~e~~l~~~~g~~~~~-~l 74 (325)
T cd01334 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIA-ADQ----VEQEGSGTHDVMAVEEVLAERAGELNGG-YV 74 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCcc-ccC----eeeCCCCccHHHHHHHHHHHHhccccCC-CC
Confidence 4678899999999999999 999999999999999875443 222 5899999999999999999988653232 33
Q ss_pred CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 192 LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 192 N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
..+.|+||-.+|++.+...-.+. .+ .+.|..|.++|..+.++.+
T Consensus 75 H~G~S~nDi~~ta~~l~lr~~~~-~l---------~~~l~~l~~~L~~~A~~~~ 118 (325)
T cd01334 75 HTGRSSNDIVDTALRLALRDALD-IL---------LPALKALIDALAAKAEEHK 118 (325)
T ss_pred ccCCCCccHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHcc
Confidence 89999999999999665544333 44 5678888999888887744
No 25
>PRK04833 argininosuccinate lyase; Provisional
Probab=98.25 E-value=2.8e-06 Score=83.25 Aligned_cols=108 Identities=17% Similarity=0.087 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhCCCCC---CCc
Q psy16748 119 LKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTV---LGW 194 (291)
Q Consensus 119 VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~g---N~~ 194 (291)
+-.|-|.+-.++| |+++.+++|.+||++|.+.. +.+|..+++++.++ ++++|.++..+++| +.| -.+
T Consensus 36 ~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~---~~~~~~~~~~~~ed-----v~~~ie~~L~~~~g-~~g~~lH~g 106 (455)
T PRK04833 36 GSVAWSKALVTVGVLTADEQQQLEEALNELLEEV---RANPQQILASDAED-----IHSWVEGKLIDKVG-DLGKKLHTG 106 (455)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhh---hcCCcccCCCCCch-----HHHHHHHHHHHHhc-cccCcccCC
Confidence 3388899999999 99999999999999997543 25788899999999 99999999999998 333 788
Q ss_pred ccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 195 FSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 195 qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+|+||..+|++.+...-.+. .+ .+.|+.|.++|..+.++.+
T Consensus 107 rSrnD~~~Ta~rl~~r~~l~-~l---------~~~l~~l~~~L~~~A~~~~ 147 (455)
T PRK04833 107 RSRNDQVATDLKLWCKDQVA-EL---------LTALRQLQSALVETAENNQ 147 (455)
T ss_pred CCchhhHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHcC
Confidence 99999999999777666553 34 5688999999988888754
No 26
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=97.62 E-value=4.4e-05 Score=74.41 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=96.6
Q ss_pred CccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHH--HHc---CCCCCCC
Q psy16748 83 PNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADE--VIS---GKLYAEH 156 (291)
Q Consensus 83 P~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdE--Ii~---Gkl~~dq 156 (291)
|-+.+||....|++ | | +..+++++..|.+|.|.+..++| ++++.+++|.++|++ +.. +.. ...
T Consensus 5 ~~~~~~~~~~~~~~--~--s------~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~~~~-~~~ 73 (449)
T PRK08540 5 PIDYRYGTPEMKRV--W--S------EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERVKEI-EAE 73 (449)
T ss_pred CcCcccCCHHHHHH--c--C------hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHH-HHH
Confidence 55678887766665 5 4 57899999999999999999999 999999999999976 421 112 122
Q ss_pred cccccccCCchhhcCCChHHHHHHHHHHHhCCCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhc
Q psy16748 157 FPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSA 236 (291)
Q Consensus 157 FPLdvfQgGSGTSTNMNVNEVIANRA~EiLG~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~ 236 (291)
+.-|+ |++..+|..+.-...| +.-..++||||.++|++.+...-.+ ..+ .+.|+.|.++
T Consensus 74 ~~~~v----------~~~e~~L~~~~~~~~~-~~vH~g~S~nDi~~Ta~~L~lr~~l-~~l---------~~~L~~l~~~ 132 (449)
T PRK08540 74 IHHDI----------MAVVKALSEVCEGDAG-EYVHFGATSNDIIDTATALQLKDSL-EIL---------EEKLKKLRGV 132 (449)
T ss_pred hCCCc----------HHHHHHHHHHhhhhhh-cceecCccHhhHHhHHHHHHHHHHH-HHH---------HHHHHHHHHH
Confidence 22222 6788888877642233 2338999999999999987755444 344 5688889999
Q ss_pred cCCCchhhc
Q psy16748 237 GSSDSEEGE 245 (291)
Q Consensus 237 ~~~~~e~~~ 245 (291)
|..++++.+
T Consensus 133 L~~~A~~~~ 141 (449)
T PRK08540 133 LLKKAEEHK 141 (449)
T ss_pred HHHHHHHhc
Confidence 988888754
No 27
>PRK08470 adenylosuccinate lyase; Provisional
Probab=96.70 E-value=0.0041 Score=61.13 Aligned_cols=111 Identities=17% Similarity=0.086 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHH-HHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHH--HH
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAAD-EVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA--IE 184 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~Acd-EIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA--~E 184 (291)
+...++++..|.+|.|.+..++| ++++.+++|.++|+ ++.. ++-...+.| ++|++..+ .+
T Consensus 16 ~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~---------~~~~~~~~~-------~dv~~~v~~L~e 79 (442)
T PRK08470 16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIAR---------IDEIEKTTK-------HDLIAFLTSVSE 79 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHH---------HHHHHHccC-------CChHHHHHHHHH
Confidence 56889999999999999999999 99999999999983 1110 011111111 56666655 34
Q ss_pred HhCCCCC--CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 185 ILGKNTV--LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 185 iLG~~~g--N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+|...+ -.+.||||..+|++.+...-.+ ..+ .+.|..|.++|...+++-+
T Consensus 80 ~~g~~~~~vH~G~TsnDi~dTa~~L~lr~~l-~~l---------~~~l~~l~~~L~~lA~~~~ 132 (442)
T PRK08470 80 SLGEESRFVHYGMTSSDCIDTAVALQMRDSL-KLI---------IEDVKNLMEAIKKRALEHK 132 (442)
T ss_pred HccccccceecCCChhchHhHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHhC
Confidence 5553322 7889999999999966544443 233 6678888888887777644
No 28
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=95.92 E-value=0.0085 Score=57.73 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcC--CCCCCCcccccccCCchhhcCCChHHHHHHHHHHH
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISG--KLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~G--kl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~Ei 185 (291)
+..+|+++..|.+|-|++..++| ++++-+++|.++|+++.+. .. .+. . |--. |++-.++..++-+
T Consensus 13 ~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~~~-~~~-------~--~~dv-~~~e~~L~~~~g~- 80 (387)
T cd01360 13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVKEI-EAE-------T--KHDV-IAFVTAIAEYCGE- 80 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHHHH-HHH-------h--CCCh-HHHHHHHHHHHHH-
Confidence 56899999999999999999999 9999999999999754321 11 111 1 1111 4555566655533
Q ss_pred hCCCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 186 LGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 186 LG~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.| +.-..+.|+||-.+|++.+... +-...+ .+.|..|.++|..++++..
T Consensus 81 ~~-~~lH~G~S~nDi~~ta~~L~lr-~~l~~l---------~~~l~~l~~~L~~~A~~~~ 129 (387)
T cd01360 81 AG-RYIHFGLTSSDVVDTALALQLR-EALDII---------LKDLKELLEVLKKKALEHK 129 (387)
T ss_pred hh-hheeCCCChhhhHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHhC
Confidence 22 2338999999999999976543 333344 5678888888888877754
No 29
>PRK06390 adenylosuccinate lyase; Provisional
Probab=95.26 E-value=0.014 Score=57.40 Aligned_cols=136 Identities=17% Similarity=0.097 Sum_probs=91.5
Q ss_pred cCccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccc
Q psy16748 82 VPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLV 160 (291)
Q Consensus 82 VP~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLd 160 (291)
-|-+..||....|++ | | +...++++..|-.|-|.+-.++| ++.+-+++|.++|+++.. .+ .. +.
T Consensus 4 ~~~~~~y~~~~~~~i--~--s------~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~-d~-~~---~~ 68 (451)
T PRK06390 4 SPIEYRYGRDQVKYI--F--D------DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSV-RL-ER---VR 68 (451)
T ss_pred CCcCcccCCHHHHHH--c--C------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccC-CH-HH---HH
Confidence 366779997766665 5 4 57889999999999999999999 999999999999876311 11 00 01
Q ss_pred cccCCchhhcCCChHHHHHHHHHHHhCCCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCC
Q psy16748 161 IWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSD 240 (291)
Q Consensus 161 vfQgGSGTSTNMNVNEVIANRA~EiLG~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~ 240 (291)
..-...|--+ +++-..+..++-+ .| +.--.++||||.++|++.+...-.+ ..+ .+.|..|.++|..+
T Consensus 69 ~~~~~~~~dv-~~~~~~L~~~~g~-~~-~~iH~G~SsnDi~~Ta~~L~lr~~l-~~l---------~~~l~~l~~~L~~l 135 (451)
T PRK06390 69 EIESEIKHDV-MALVEALSEQCSA-GK-NYVHFGVTSNDINDTATALQIHDFV-SII---------KDDIKNLMETLIKL 135 (451)
T ss_pred HHHHHhCCCc-HHHHHHHHHHhhh-hh-hheecCccHhhhHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHH
Confidence 1111112233 5555555554421 11 2227889999999999976655443 344 56788888999888
Q ss_pred chhhc
Q psy16748 241 SEEGE 245 (291)
Q Consensus 241 ~e~~~ 245 (291)
+++.+
T Consensus 136 A~~~~ 140 (451)
T PRK06390 136 IDEYK 140 (451)
T ss_pred HHHhC
Confidence 88754
No 30
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=95.09 E-value=0.017 Score=55.37 Aligned_cols=120 Identities=16% Similarity=0.012 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhC
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG 187 (291)
+..++++...|-+|-|.+-.++| ++++-+++|.++++++ +-.. ..-+..+. .+ |--+ +.+--.+..+.-+-.|
T Consensus 7 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~-~~d~-~~~~~~~~-~~--~~~v-~~~e~~L~~~~g~~~~ 80 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVF-EIDA-ERIAEIEK-ET--GHDV-IAFVYALAEKCGEDAG 80 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcc-cCCH-HHHHHHHH-Hh--CcCc-HHHHHHHHHHhhhHhh
Confidence 46889999999999999999999 9999999999999886 2222 11111111 11 1122 3333333333322112
Q ss_pred CCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 188 KNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 188 ~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+.-..++||||.++|++.+...-.+. .+ .+.|..|.++|..++++.+
T Consensus 81 -~~vH~g~S~nDi~~Ta~~l~lr~~l~-~l---------~~~l~~l~~~L~~~A~~~~ 127 (381)
T cd01595 81 -EYVHFGATSQDINDTALALQLRDALD-II---------LPDLDALIDALAKLALEHK 127 (381)
T ss_pred -hHeecCcCHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHc
Confidence 22289999999999999877665554 44 5678888888888887754
No 31
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=95.09 E-value=0.074 Score=54.14 Aligned_cols=114 Identities=12% Similarity=-0.053 Sum_probs=79.3
Q ss_pred HHHHHHHH-----HHHHHHHHHcC-CCHHhHHHHHHHHHHHH-cCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHH
Q psy16748 113 ITAMGTLK-----KAAAQVNKEFG-LDAKVADAISKAADEVI-SGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185 (291)
Q Consensus 113 IrAla~VK-----kAAA~AN~elG-Ld~ekA~AI~~AcdEIi-~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~Ei 185 (291)
+.....+- .|=|.+-.++| ++++-+++|.+|++++. ++.. +-.+..+. .. -.++.+|.+.-.+.
T Consensus 25 ~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~-~~~~~~~~---~~-----ed~h~~ie~~L~~~ 95 (614)
T PRK12308 25 FDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVME-DPEQILLS---DA-----EDIHSWVEQQLIGK 95 (614)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCCCC---cc-----ccHHHHHHHHHHHH
Confidence 34445555 88889999999 99999999999999885 2212 21332222 11 23677888766677
Q ss_pred hCCCCC--CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 186 LGKNTV--LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 186 LG~~~g--N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+|...+ -.++|+||..+|++.+...-.+ ..+ .+.|+.|.++|..++++.+
T Consensus 96 ~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~-~~l---------~~~l~~l~~~l~~~a~~~~ 147 (614)
T PRK12308 96 VGDLGKKLHTGRSRNDQVATDLKLWCRQQG-QQL---------LLALDQLQQQMVNVAERHQ 147 (614)
T ss_pred hcccccceecCCChhhHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHHcC
Confidence 773222 7889999999999976664433 333 6788999999988888754
No 32
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=95.05 E-value=0.056 Score=52.80 Aligned_cols=128 Identities=13% Similarity=0.036 Sum_probs=84.8
Q ss_pred cCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccc-
Q psy16748 85 DKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIW- 162 (291)
Q Consensus 85 daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvf- 162 (291)
|-+||....|++ | | +..+++++..|-+|-|.+-.++| ++++-+++|.++|+ + + .+.++-+
T Consensus 2 ~~~y~~~~~~~i--f--s------~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~~-~-~------~~d~~~l~ 63 (435)
T TIGR00928 2 DERYGTPEMRAI--W--S------EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKAN-F-T------DVDLARIK 63 (435)
T ss_pred CcccCcHHHHHH--h--C------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCC-C-C------ccCHHHHH
Confidence 357887767766 4 4 47889999999999999999999 99999999988732 2 1 0111111
Q ss_pred cC--CchhhcCCChHHHHHHHHHHHhC--CCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccC
Q psy16748 163 QT--GSGTQTNMNTNEVISNRAIEILG--KNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGS 238 (291)
Q Consensus 163 Qg--GSGTSTNMNVNEVIANRA~EiLG--~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~ 238 (291)
+. ..|--+ +++-..|.. .+| ++.-+.++||||.++|++.+...-.+ ..+ .+.|..|.++|.
T Consensus 64 ~~~~~~~~~v-~~~e~~l~~----~~g~~~~~vh~g~SsnD~~~Ta~~l~lr~~l-~~l---------~~~l~~l~~~L~ 128 (435)
T TIGR00928 64 EIEAVTRHDV-KAVVYALKE----KCGAEGEFIHFGATSNDIVDTALALLLRDAL-EII---------LPKLKQLIDRLK 128 (435)
T ss_pred HHHHHHCcCh-HHHHHHHHH----HhhhhhhheeecccHHHHHHhHHHHHHHHHH-HHH---------HHHHHHHHHHHH
Confidence 00 111112 222222222 234 12239999999999999988766543 344 668889999998
Q ss_pred CCchhhc
Q psy16748 239 SDSEEGE 245 (291)
Q Consensus 239 ~~~e~~~ 245 (291)
.++++.+
T Consensus 129 ~~A~~~~ 135 (435)
T TIGR00928 129 DLAVEYK 135 (435)
T ss_pred HHHHHHc
Confidence 8888754
No 33
>PRK02186 argininosuccinate lyase; Provisional
Probab=92.07 E-value=0.24 Score=52.44 Aligned_cols=143 Identities=11% Similarity=-0.002 Sum_probs=93.0
Q ss_pred ccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccc
Q psy16748 84 NDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIW 162 (291)
Q Consensus 84 ~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvf 162 (291)
..++|+. |-.++.-|.-.. ...-....++++..+-.|=|.+-.+.| ++++-+++|.+|+.++.+... +.|..+.
T Consensus 411 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~~~~~~~~--~~~~~~~- 485 (887)
T PRK02186 411 GAARPGL-PPEAQAIVYGPG-ASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDAGF--APLLARP- 485 (887)
T ss_pred CccccCC-ChhhhceecCCC-cchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhHH--hhCcCCC-
Confidence 3445643 445555553111 122245789999999999999999999 999999999999988864222 2333333
Q ss_pred cCCchhhcCCChHHHHHHHHHHHhCCCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCch
Q psy16748 163 QTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSE 242 (291)
Q Consensus 163 QgGSGTSTNMNVNEVIANRA~EiLG~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e 242 (291)
..+-.-|++-..+..++-+-.| ..--.+.|+||..+|++.+...-.+ ..+ .+.|..|.++|..+++
T Consensus 486 ---~~~~~~~~~e~~L~~~~g~~~~-~~lH~grSrnD~v~T~~~l~lr~~~-~~l---------~~~l~~l~~~L~~~A~ 551 (887)
T PRK02186 486 ---APRGLYMLYEAYLIERLGEDVG-GVLQTARSRNDINATTTKLHLREAT-SRA---------FDALWRLRRALVFKAS 551 (887)
T ss_pred ---CCcchHHHHHHHHHHHhChhhh-cccCccccHHHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHH
Confidence 2223567766555554421112 2227899999999999866544444 233 5678888999988887
Q ss_pred hhc
Q psy16748 243 EGE 245 (291)
Q Consensus 243 ~~~ 245 (291)
+.+
T Consensus 552 ~~~ 554 (887)
T PRK02186 552 ANV 554 (887)
T ss_pred HcC
Confidence 754
No 34
>PRK06705 argininosuccinate lyase; Provisional
Probab=91.18 E-value=0.82 Score=46.17 Aligned_cols=117 Identities=15% Similarity=-0.008 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHHhC
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILG 187 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~EiLG 187 (291)
...++..+..|-+|-|.+-.++| ++++-+++|.+|++++.+. - .+.|. + .+.|=.+-++ |-.+..+..|
T Consensus 34 ~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~~~-~-~~~l~---~-~~~~edv~~~----ie~~l~~~~G 103 (502)
T PRK06705 34 RNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVEEI-P-EEQLL---Y-TEQHEDLFFL----VEHLISQEAK 103 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhc-c-cCccc---c-CCCCCchHHH----HHHHHHHhcC
Confidence 34678889999999999999999 9999999999999987431 1 23343 1 2222233333 4444444444
Q ss_pred CCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 188 KNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 188 ~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+.| --+.|+||..+|++.+...-.+. .+ .+.|..|.++|..++++.+
T Consensus 104 ~~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~-~l---------~~~l~~l~~~l~~~A~~~~ 154 (502)
T PRK06705 104 SDFVSNMHIGRSRNDMGVTMYRMSLRRYVL-RL---------MEHHLLLQESILQLAADHK 154 (502)
T ss_pred chhhccccCCCCHhhHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHcC
Confidence 3222 78899999999999665554443 23 5678888999888877744
No 35
>PRK07492 adenylosuccinate lyase; Provisional
Probab=86.49 E-value=1.7 Score=43.16 Aligned_cols=128 Identities=11% Similarity=0.089 Sum_probs=79.3
Q ss_pred ccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCccccc-ccC
Q psy16748 87 YYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVI-WQT 164 (291)
Q Consensus 87 YYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdv-fQg 164 (291)
.||..-.|++ | | +...++++..|-.|-|.|-.++| ++++.+++|.++|.. ..+ + ++- ...
T Consensus 4 ~y~~~~~~~i--~--s------~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~---~~~-d----~~~~~~~ 65 (435)
T PRK07492 4 RYSRPEMVAI--W--E------PETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKD---AEF-D----VARIDEI 65 (435)
T ss_pred ccCcHHHHHH--c--C------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcc---cCC-C----HHHHHHH
Confidence 5665444444 4 3 35789999999999999999999 999999999888742 001 1 111 111
Q ss_pred CchhhcCCChHHHHHHHHHHHhCC--CCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCch
Q psy16748 165 GSGTQTNMNTNEVISNRAIEILGK--NTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSE 242 (291)
Q Consensus 165 GSGTSTNMNVNEVIANRA~EiLG~--~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e 242 (291)
-+ .++-.|=-++..+.- .+|. +.--.+.||||..+|++.+...-. ...+ .+.|..|.++|..+++
T Consensus 66 ~~--~~~h~v~a~~~~L~~-~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~-~~~l---------~~~l~~l~~~L~~~A~ 132 (435)
T PRK07492 66 EA--VTKHDVIAFLTHLAE-FVGPDARFVHQGMTSSDVLDTCLNVQLVRA-ADLL---------LADLDRVLAALKKRAF 132 (435)
T ss_pred HH--HhCCChHHHHHHHHH-HhhHhhhhhcCCCChhhhHHHHHHHHHHHH-HHHH---------HHHHHHHHHHHHHHHH
Confidence 11 122222222222222 2242 222788999999999996655433 3334 5678888888887777
Q ss_pred hhc
Q psy16748 243 EGE 245 (291)
Q Consensus 243 ~~~ 245 (291)
+.+
T Consensus 133 ~~~ 135 (435)
T PRK07492 133 EHK 135 (435)
T ss_pred HcC
Confidence 644
No 36
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=78.62 E-value=3.8 Score=40.83 Aligned_cols=119 Identities=8% Similarity=-0.114 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCH------HhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHH
Q psy16748 109 PLPVITAMGTLKKAAAQVNKEFG-LDA------KVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNR 181 (291)
Q Consensus 109 P~elIrAla~VKkAAA~AN~elG-Ld~------ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANR 181 (291)
....|+++..|-.|-|+|-.++| +++ +-++.|.++|...-.-.+ -.+.+.-..| ...+=-+..-.
T Consensus 7 ~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~------~~~~~~~~~~--~hdv~al~~~l 78 (425)
T cd01598 7 EYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDA------LRIKEIEATT--NHDVKAVEYFL 78 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCH------HHHHHHHHHH--CCCcHHHHHHH
Confidence 35789999999999999999999 888 889999888853100000 0011111111 11111111111
Q ss_pred HHHHhC--C---C---CCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 182 AIEILG--K---N---TVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 182 A~EiLG--~---~---~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
.+..| + + .--.+-||||..+|++.+...-.+...+ .+.|..|.++|..++++.+
T Consensus 79 -~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l---------~~~L~~l~~~L~~lA~~~~ 140 (425)
T cd01598 79 -KEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVI---------LPLLKEIIDSLKKLAKEYA 140 (425)
T ss_pred -HHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcC
Confidence 12233 1 1 1166789999999999766555443333 4567777888877777644
No 37
>PRK07380 adenylosuccinate lyase; Provisional
Probab=63.09 E-value=17 Score=36.22 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=76.9
Q ss_pred ccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCC
Q psy16748 87 YYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTG 165 (291)
Q Consensus 87 YYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgG 165 (291)
.||..-.|++ | | +...++++..|-.|-|.+=.++| ++.+.+++|.++|+ + + +-.+...-
T Consensus 4 ~y~~~~~~~~--f--s------~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~------~-d---~~~i~~~~ 63 (431)
T PRK07380 4 RYTLPEMGNI--W--T------DTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKAN------F-D---PQRILEIE 63 (431)
T ss_pred ccCcHHHHHH--c--C------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccC------C-C---HHHHHHHH
Confidence 5664444444 4 3 56889999999999999999999 99999999987651 1 1 00111111
Q ss_pred chhhcCCChHHHHHHHHHHHhCC--CCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchh
Q psy16748 166 SGTQTNMNTNEVISNRAIEILGK--NTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEE 243 (291)
Q Consensus 166 SGTSTNMNVNEVIANRA~EiLG~--~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~ 243 (291)
..| +-.|=-++.... +.+|. +.--.+.||||..+|++.+...-.+ ..+ .+.|..|.++|...+++
T Consensus 64 ~~~--~h~v~a~v~~l~-~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~l-~~l---------~~~l~~l~~~L~~lA~~ 130 (431)
T PRK07380 64 AEV--RHDVIAFLTNVN-EYVGDAGRYIHLGMTSSDVLDTGLALQLVASL-DLL---------LEELEDLIQAIRYQARE 130 (431)
T ss_pred HHh--CCChHHHHHHHH-HHHHHhhccccCCCChhhhHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHHHHH
Confidence 111 111111222211 12231 2227789999999999966554333 334 55777888888777776
Q ss_pred hc
Q psy16748 244 GE 245 (291)
Q Consensus 244 ~~ 245 (291)
.+
T Consensus 131 ~~ 132 (431)
T PRK07380 131 HR 132 (431)
T ss_pred cC
Confidence 44
No 38
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=56.16 E-value=34 Score=35.16 Aligned_cols=131 Identities=21% Similarity=0.103 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHH
Q psy16748 107 RMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185 (291)
Q Consensus 107 ~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~Ei 185 (291)
.....+...=...-+|=+....+.| |+++-++.|.++..+|.+.-. ..+|.+++= .=-+.+.|=++-.++
T Consensus 26 ~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~-~g~~~~~~~--------~EDvH~aiE~~L~~~ 96 (459)
T COG0165 26 SFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIR-AGKFELDPD--------DEDVHTAIEARLIER 96 (459)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh-cCCccCCCc--------cccHHHHHHHHHHHH
Confidence 3445666666667788889999999 999999999999998885222 223333322 133455566777777
Q ss_pred hCCCCC---CCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhccC--CCCccccCCC
Q psy16748 186 LGKNTV---LGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGEEG--GGWDFVQGGQ 257 (291)
Q Consensus 186 LG~~~g---N~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~~~--~~~~~~~~~~ 257 (291)
+| +.| --.-|-||.=.|.+.+-..-++. .+.+.+..|+++|....|+-.+. -|..|.|--|
T Consensus 97 iG-~~ggkLhtgRSRNDQVatd~rL~lr~~~~----------~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~AQ 162 (459)
T COG0165 97 IG-DVGGKLHTGRSRNDQVATDLRLWLRDKLL----------ELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQ 162 (459)
T ss_pred Hh-hhhchhccccchhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHccCCccCCcccccccC
Confidence 77 444 45678899887777554333332 23678899999998777764433 3555555444
No 39
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=41.47 E-value=13 Score=24.61 Aligned_cols=16 Identities=19% Similarity=0.677 Sum_probs=13.6
Q ss_pred CCCcccccccceeeec
Q psy16748 1 MNSDCTSCGKKIEISN 16 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (291)
|.-.|..||++++|..
T Consensus 1 M~~~CP~C~~~~~v~~ 16 (38)
T TIGR02098 1 MRIQCPNCKTSFRVVD 16 (38)
T ss_pred CEEECCCCCCEEEeCH
Confidence 6778999999999874
No 40
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=38.42 E-value=53 Score=28.30 Aligned_cols=62 Identities=24% Similarity=0.028 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhCCCC----CCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 174 TNEVISNRAIEILGKNT----VLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 174 VNEVIANRA~EiLG~~~----gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
++++++.++.+..++.. ...+.|+||...|++-+.....+. .+ .+.+..+..++....|+-+
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~-~l---------~~~l~~~~~~l~~~a~~~~ 81 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALD-DL---------LPLLKALIDALALKAEAHK 81 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHhc
Confidence 55566666655544433 258899999999999655554443 33 4566677777776666643
No 41
>PRK09285 adenylosuccinate lyase; Provisional
Probab=37.13 E-value=47 Score=33.52 Aligned_cols=119 Identities=5% Similarity=-0.124 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-C---CH---HhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcC--CChHHHHHH
Q psy16748 110 LPVITAMGTLKKAAAQVNKEFG-L---DA---KVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTN--MNTNEVISN 180 (291)
Q Consensus 110 ~elIrAla~VKkAAA~AN~elG-L---d~---ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTN--MNVNEVIAN 180 (291)
..+++++..|-.|-|++-.++| + ++ +.+++|.++|.++..+.+ ....-..-..-+ |.+-..+..
T Consensus 30 ~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~-------~~i~~~e~~~~hdv~a~~~~l~~ 102 (456)
T PRK09285 30 FGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDA-------ARIKEIERTTNHDVKAVEYFLKE 102 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccH-------HHHHHHHHHhCCChHHHHHHHHH
Confidence 6889999999999999999997 3 33 333448777744322221 000000001111 223333333
Q ss_pred HHHH-----HhCCCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccCCCchhhc
Q psy16748 181 RAIE-----ILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245 (291)
Q Consensus 181 RA~E-----iLG~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~~~~e~~~ 245 (291)
+.-+ -.| +.---+.||||..+|++-+...-.+...+ .+.|..|.++|..++++.+
T Consensus 103 ~~~~~~~~~~~~-~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l---------~~~L~~l~~~L~~lA~~~~ 162 (456)
T PRK09285 103 KLAGLPELEAVS-EFIHFACTSEDINNLSHALMLKEAREEVL---------LPALRELIDALKELAHEYA 162 (456)
T ss_pred HhcccCcchhHH-hHccCCCChhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcC
Confidence 2211 001 11267889999999999654443332213 5577788888887777754
No 42
>PRK06389 argininosuccinate lyase; Provisional
Probab=35.28 E-value=89 Score=31.75 Aligned_cols=111 Identities=9% Similarity=0.007 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHHHHH
Q psy16748 107 RMPLPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185 (291)
Q Consensus 107 ~mP~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA~Ei 185 (291)
....+++..-..+-+|=+..-.+.| |+++-+.+|.+|.++|.+|.+ +++.=. =-+.|++--.+..|+-+
T Consensus 26 ~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~~~~-----~~~~~~----EDvh~~iE~~L~~~~G~- 95 (434)
T PRK06389 26 DADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYKNGI-----EIDLDL----EDVHTAIENFVIRRCGD- 95 (434)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCCC-----cCCCCC----CchHHHHHHHHHHHhch-
Confidence 3345666666668888889999999 999999999999999987654 333211 12335544433333332
Q ss_pred hCCCCCCCcccCCCcccccchhhHHHHhhchhhhhcccccchhhHhhhhhccC
Q psy16748 186 LGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNVDENVLNLSSAGS 238 (291)
Q Consensus 186 LG~~~gN~~qSsNdtfpt~mhia~~~e~~~~~~~r~~~~~~~~~~~~l~~~~~ 238 (291)
.|++. -..-|-||.=.|.+.+...-++. .+...|..|.+++-
T Consensus 96 ~gg~l-htgRSRNDqvat~~RL~~r~~~~----------~~~~~l~~l~~~l~ 137 (434)
T PRK06389 96 MFKNF-RLFLSRNEQVHADLNLFIIDKII----------EIEKILYEIIKVIP 137 (434)
T ss_pred hhhhh-cccCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 22221 56778899877777554332222 22456666676665
No 43
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.09 E-value=21 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=10.3
Q ss_pred CCCcccccccceee
Q psy16748 1 MNSDCTSCGKKIEI 14 (291)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (291)
|-..|.+||+.|+.
T Consensus 1 m~~~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 1 MEMFCPNCGAEIDP 14 (26)
T ss_pred CcCCCcccCCcCCc
Confidence 45679999997653
No 44
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=32.55 E-value=44 Score=25.78 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.4
Q ss_pred cCCCHHhHHHHHHHHHHHHcCCCCCCCcccccc
Q psy16748 130 FGLDAKVADAISKAADEVISGKLYAEHFPLVIW 162 (291)
Q Consensus 130 lGLd~ekA~AI~~AcdEIi~Gkl~~dqFPLdvf 162 (291)
+|+...+++.|..+++.+. |+. +--||+|.+
T Consensus 48 ~G~~~~ka~~i~~~a~~~~-~~~-d~~~~~D~~ 78 (108)
T PF00730_consen 48 LGFSRRKAKYIIELARAIL-GRP-DPFPPVDTH 78 (108)
T ss_dssp STSHHHHHHHHHHHHHHHH-C-S-SSS-TTSHH
T ss_pred cCCCHHHHHHHHHHHHHhh-hcc-cceecCcHH
Confidence 5899999999999999998 766 567899976
No 45
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=32.17 E-value=47 Score=25.50 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=23.0
Q ss_pred CCHHhHHHHHHHHH----HHHcCCCCCCCccccccc
Q psy16748 132 LDAKVADAISKAAD----EVISGKLYAEHFPLVIWQ 163 (291)
Q Consensus 132 Ld~ekA~AI~~Acd----EIi~Gkl~~dqFPLdvfQ 163 (291)
|+.+-..+.-.|+| ||..|++ -|.-|-.||+
T Consensus 23 L~~~e~~~f~~AaDHR~AEL~~~kl-yDkVP~~vW~ 57 (57)
T PF05321_consen 23 LTDDELEAFNSAADHRRAELTMGKL-YDKVPKSVWK 57 (57)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHTTS---SS--CHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhh-hhhCCHHhcC
Confidence 78888889999998 8889999 7799999985
No 46
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=31.93 E-value=1e+02 Score=29.33 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=33.7
Q ss_pred HcCCCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhcCCChHHHHHHHH
Q psy16748 129 EFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRA 182 (291)
Q Consensus 129 elGLd~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTSTNMNVNEVIANRA 182 (291)
++|++..+++.|+..|+.+.+|.+ + ++.++ .||.+|||..+-
T Consensus 160 ~~g~s~~Ka~yi~~~A~~~~~g~~-~----~~~l~-------~~~~e~a~e~L~ 201 (285)
T COG0122 160 RCGLSGRKAEYIISLARAAAEGEL-D----LSELK-------PLSDEEAIEELT 201 (285)
T ss_pred HhCCcHHHHHHHHHHHHHHHcCCc-c----HHHhc-------cCCHHHHHHHHH
Confidence 466888999999999999999975 3 33343 599999998875
No 47
>PF14149 YhfH: YhfH-like protein
Probab=31.02 E-value=9.5 Score=26.93 Aligned_cols=10 Identities=70% Similarity=1.491 Sum_probs=8.7
Q ss_pred ccccccccee
Q psy16748 4 DCTSCGKKIE 13 (291)
Q Consensus 4 ~~~~~~~~~~ 13 (291)
.|+.||+.|+
T Consensus 15 ~C~~CG~~i~ 24 (37)
T PF14149_consen 15 KCTECGKEIE 24 (37)
T ss_pred ccHHHHHHHH
Confidence 5999999985
No 48
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=30.66 E-value=28 Score=26.03 Aligned_cols=15 Identities=40% Similarity=1.032 Sum_probs=9.9
Q ss_pred CCCcccccccceeee
Q psy16748 1 MNSDCTSCGKKIEIS 15 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (291)
|...|..||..|++.
T Consensus 1 ~~~~CP~CG~~iev~ 15 (54)
T TIGR01206 1 MQFECPDCGAEIELE 15 (54)
T ss_pred CccCCCCCCCEEecC
Confidence 345677777777663
No 49
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=29.11 E-value=22 Score=22.15 Aligned_cols=10 Identities=50% Similarity=1.205 Sum_probs=7.9
Q ss_pred ccccccccee
Q psy16748 4 DCTSCGKKIE 13 (291)
Q Consensus 4 ~~~~~~~~~~ 13 (291)
.|+.||++|+
T Consensus 1 ~Cp~CG~~~~ 10 (23)
T PF13240_consen 1 YCPNCGAEIE 10 (23)
T ss_pred CCcccCCCCC
Confidence 3888998875
No 50
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=28.37 E-value=22 Score=24.14 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=13.5
Q ss_pred CCCcccccccceeeec
Q psy16748 1 MNSDCTSCGKKIEISN 16 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (291)
|.-.|.+|+++.+|..
T Consensus 1 M~i~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 1 MIITCPNCQAKYEIDD 16 (36)
T ss_pred CEEECCCCCCEEeCCH
Confidence 6678999999998864
No 51
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=27.09 E-value=58 Score=31.97 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=24.6
Q ss_pred HHHcC-CCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCch
Q psy16748 127 NKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSG 167 (291)
Q Consensus 127 N~elG-Ld~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSG 167 (291)
+.--| |-.-.++.|++|++.-++-++ |+.+|-...|
T Consensus 132 ~FmgGSmGsVvGeki~ra~E~A~e~k~-----P~v~f~aSGG 168 (294)
T COG0777 132 AFMGGSMGSVVGEKITRAIERAIEDKL-----PLVLFSASGG 168 (294)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhCC-----CEEEEecCcc
Confidence 33346 888889999999998887766 5555543333
No 52
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=27.00 E-value=2.6e+02 Score=21.03 Aligned_cols=39 Identities=31% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHc
Q psy16748 111 PVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVIS 149 (291)
Q Consensus 111 elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~ 149 (291)
+|-..+..+||+.---=-+.| |+.+.|++|....++-.+
T Consensus 11 ~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~ 50 (59)
T PF10925_consen 11 ALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQE 50 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 566777888888766666889 999999999999887654
No 53
>PLN02848 adenylosuccinate lyase
Probab=26.01 E-value=1.2e+02 Score=30.66 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=44.1
Q ss_pred CccCccchhhhhhhhccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC-C---CH---HhHHHHHHHHH
Q psy16748 83 PNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFG-L---DA---KVADAISKAAD 145 (291)
Q Consensus 83 P~daYYGaQTqRAleNF~Isg~~e~mP~elIrAla~VKkAAA~AN~elG-L---d~---ekA~AI~~Acd 145 (291)
|-+-.||.+|..-.+-| | ...+|+++..|-.|-|.+-.++| + ++ +.+++|.++|.
T Consensus 14 pl~~ry~~~~~e~~~if--S------d~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~ 75 (458)
T PLN02848 14 PLDGRYWSKVKDLRPIF--S------EFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIA 75 (458)
T ss_pred CchhhhcCCcHHHHHHc--C------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 55668888666555556 3 46889999999999999999999 7 66 88899988873
No 54
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=25.46 E-value=37 Score=29.95 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=17.5
Q ss_pred cccccccce------eeecCCCcccccc
Q psy16748 4 DCTSCGKKI------EISNFPPTLHAHE 25 (291)
Q Consensus 4 ~~~~~~~~~------~~~~~~~~~~~~~ 25 (291)
.|..||++. .|+.+|+.|-.|-
T Consensus 184 ~C~~C~~~~~~~~~~~i~~~P~iL~i~l 211 (304)
T cd02661 184 KCERCKKKVKASKQLTIHRAPNVLTIHL 211 (304)
T ss_pred eCCCCCCccceEEEEEEecCCcEEEEEE
Confidence 699999864 5789999987663
No 55
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=24.68 E-value=39 Score=30.78 Aligned_cols=22 Identities=36% Similarity=0.795 Sum_probs=17.5
Q ss_pred Ccccccccc------eeeecCCCccccc
Q psy16748 3 SDCTSCGKK------IEISNFPPTLHAH 24 (291)
Q Consensus 3 ~~~~~~~~~------~~~~~~~~~~~~~ 24 (291)
..|.+||++ ..|+++|+.|-.|
T Consensus 172 ~~C~~C~~~~~~~k~~~i~~lP~vLii~ 199 (334)
T cd02659 172 YFCEKCGKKVDAEKGVCFKKLPPVLTLQ 199 (334)
T ss_pred EecCcCCCcccEEEEEEeecCCCEEEEE
Confidence 469999987 5678899988665
No 56
>PRK00392 rpoZ DNA-directed RNA polymerase subunit omega; Reviewed
Probab=24.67 E-value=75 Score=23.61 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHHHHHHHcCCC
Q psy16748 110 LPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKL 152 (291)
Q Consensus 110 ~elIrAla~VKkAAA~AN~elG-Ld~ekA~AI~~AcdEIi~Gkl 152 (291)
.-|.-..+.-|+|-.+.+.... .+....+.+..|.+||.+|+.
T Consensus 15 ~ry~Lv~~aakRArql~~~~~~~~~~~~~K~~~~Al~EI~~gki 58 (69)
T PRK00392 15 NRYELVLLAAKRARQLRAGAKPPVDKSSDKPVVIALREIAEGKV 58 (69)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCcCCChHHHHHHHHHcCCC
Confidence 3445555566667666664444 566667899999999999997
No 57
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.40 E-value=34 Score=22.03 Aligned_cols=9 Identities=67% Similarity=1.494 Sum_probs=6.8
Q ss_pred cccccccee
Q psy16748 5 CTSCGKKIE 13 (291)
Q Consensus 5 ~~~~~~~~~ 13 (291)
|+|||..|.
T Consensus 1 C~sC~~~i~ 9 (24)
T PF07754_consen 1 CTSCGRPIA 9 (24)
T ss_pred CccCCCccc
Confidence 889987664
No 58
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=22.45 E-value=37 Score=25.88 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=27.0
Q ss_pred CCCcccccccceeeecCCCccccccccccCCCCCccchhcccCCceeecchhhhhhh
Q psy16748 1 MNSDCTSCGKKIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLK 57 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~y~s~~~~~~m~ 57 (291)
|...|..|||+.+|..--|.. --+| .+|---|+-+-=.+|..
T Consensus 1 m~vkC~lCdk~~~Id~~~~~a--------------KrLr-nrPi~tYmC~eC~~RI~ 42 (56)
T PF09963_consen 1 MRVKCILCDKKEEIDEDTPEA--------------KRLR-NRPIHTYMCDECKERIR 42 (56)
T ss_pred CeeEEEecCCEEEeccCCHHH--------------HHhh-cCCCcceeChhHHHHHh
Confidence 567899999999998754321 1133 47888898444443333
No 59
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=21.64 E-value=1.6e+02 Score=32.30 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=46.2
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHHHHHHHcCCCCCCCcccccccCCchhhc---------------
Q psy16748 106 ERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQT--------------- 170 (291)
Q Consensus 106 e~mP~elIrAla~VKkAAA~AN~elGLd~ekA~AI~~AcdEIi~Gkl~~dqFPLdvfQgGSGTST--------------- 170 (291)
+.+..-++.|||.|+.||-+ .+|+-+--.+.|.-. .+..|+. --.+||+|=+.
T Consensus 56 ~~ld~~l~eafA~vrEa~~R---~~g~~~~dvQlig~l--~l~~G~i-------aEm~TGEGKTLvA~l~a~l~al~G~~ 123 (796)
T PRK12906 56 ESLDDLLPEAFAVAREGAKR---VLGLRPFDVQIIGGI--VLHEGNI-------AEMKTGEGKTLTATLPVYLNALTGKG 123 (796)
T ss_pred CChhhHHHHHHHHHHHHHHH---HhCCCCchhHHHHHH--HHhcCCc-------ccccCCCCCcHHHHHHHHHHHHcCCC
Confidence 45666789999999999876 466444333333221 2456765 34678887543
Q ss_pred --CCChHHHHHHHHHHHhC
Q psy16748 171 --NMNTNEVISNRAIEILG 187 (291)
Q Consensus 171 --NMNVNEVIANRA~EiLG 187 (291)
=|.+||++|.|=.+.+|
T Consensus 124 v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 124 VHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred eEEEeccHHHHHhhHHHHH
Confidence 28899999999876543
No 60
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=21.62 E-value=56 Score=22.97 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=13.8
Q ss_pred HHcCCCHHhHHHHHHHHH
Q psy16748 128 KEFGLDAKVADAISKAAD 145 (291)
Q Consensus 128 ~elGLd~ekA~AI~~Acd 145 (291)
.++||+..+|+.|++.|.
T Consensus 17 ~~f~ip~~vAk~IV~~C~ 34 (40)
T PF02022_consen 17 HKFGIPRLVAKQIVNQCP 34 (40)
T ss_dssp HHHT--HHHHHHHHHHSC
T ss_pred HHHccCHHHHHHHHHHCH
Confidence 367899999999999986
No 61
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=21.56 E-value=52 Score=20.35 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=15.4
Q ss_pred cccccccceeee---cCCCcccccccccc
Q psy16748 4 DCTSCGKKIEIS---NFPPTLHAHEGCLK 29 (291)
Q Consensus 4 ~~~~~~~~~~~~---~~~~~~~~~~~~~~ 29 (291)
.|..|++.|.-. -.......|..|++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~ 29 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFK 29 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCC
Confidence 388999987542 12234456666654
No 62
>PRK10945 gene expression modulator; Provisional
Probab=21.12 E-value=76 Score=25.41 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=27.0
Q ss_pred CCHHhHHHHHHHHH----HHHcCCCCCCCccccccc
Q psy16748 132 LDAKVADAISKAAD----EVISGKLYAEHFPLVIWQ 163 (291)
Q Consensus 132 Ld~ekA~AI~~Acd----EIi~Gkl~~dqFPLdvfQ 163 (291)
|+.+-..++..|+| |+..||+ -|..|-.|||
T Consensus 35 L~~~E~~~f~~AaDHR~AEL~~~KL-yDkVP~~vW~ 69 (72)
T PRK10945 35 LSDDELAVFYSAADHRLAELTMNKL-YDKIPSSVWK 69 (72)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhchh-HhhcCHHHhh
Confidence 77877888889998 7888999 7799999997
No 63
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.82 E-value=1.7e+02 Score=26.59 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=38.0
Q ss_pred hhhhhhhhccCCCCCCCcCC----HHHHHHHHHHHHHHHHHHH----------HcCCCHHhHHHHHHHHHH
Q psy16748 90 AQTVRSTINFPIGGETERMP----LPVITAMGTLKKAAAQVNK----------EFGLDAKVADAISKAADE 146 (291)
Q Consensus 90 aQTqRAleNF~Isg~~e~mP----~elIrAla~VKkAAA~AN~----------elGLd~ekA~AI~~AcdE 146 (291)
..+.+.++.|..+ -++. ..+|+++..|=..||+-|. .+||+.++|.++.++-.+
T Consensus 30 ~~~~~~~~ef~~~---~~~~~~dlk~vi~~l~fi~~~A~k~nv~~~~L~~eL~~lgL~~eka~~~~~~w~~ 97 (180)
T cd04755 30 ERLLNQLDEFAGE---NGISLGPLKNIVKSILLVPNGALKRNLTAEQLREDLIQLGLSEEKASYFSEQWKQ 97 (180)
T ss_pred hHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555566333 2332 2779999999988888764 578999999999987653
No 64
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=20.50 E-value=16 Score=24.99 Aligned_cols=18 Identities=39% Similarity=1.088 Sum_probs=14.4
Q ss_pred cccccccceeeecCCCcc
Q psy16748 4 DCTSCGKKIEISNFPPTL 21 (291)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (291)
.|..|++.|.-+-|-|-|
T Consensus 6 ~C~nC~R~v~a~RfA~HL 23 (33)
T PF08209_consen 6 ECPNCGRPVAASRFAPHL 23 (33)
T ss_dssp E-TTTSSEEEGGGHHHHH
T ss_pred ECCCCcCCcchhhhHHHH
Confidence 699999999999887754
No 65
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=20.06 E-value=56 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=19.7
Q ss_pred CCccccCccCccchhhhhhhhccCCC
Q psy16748 77 FGELQVPNDKYYGAQTVRSTINFPIG 102 (291)
Q Consensus 77 LGev~VP~daYYGaQTqRAleNF~Is 102 (291)
+|-...+.+-.||..|..|+..|.-.
T Consensus 15 ~gy~~~~~~g~~~~~t~~Av~~fQ~~ 40 (57)
T PF01471_consen 15 LGYYPGPVDGIFDPETREAVKAFQKA 40 (57)
T ss_dssp TTTT-SSTTSBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 34446678899999999999988643
Done!