RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16748
(291 letters)
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 246 bits (631), Expect = 5e-79
Identities = 91/125 (72%), Positives = 106/125 (84%), Gaps = 1/125 (0%)
Query: 64 RMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAA 123
+ + +RIE DTFGEL+VPNDKYYGAQTVRST+NF IGG TERMP PVI A G LK+AA
Sbjct: 24 MASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAA 83
Query: 124 AQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAI 183
A+VN+++GLD K+A+AI KAADEV GKL +HFPLV+WQTGSGTQTNMN NEVISNRAI
Sbjct: 84 AEVNQDYGLDPKIANAIMKAADEVAEGKLN-DHFPLVVWQTGSGTQTNMNVNEVISNRAI 142
Query: 184 EILGK 188
E+LG
Sbjct: 143 EMLGG 147
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 242 bits (621), Expect = 2e-77
Identities = 83/135 (61%), Positives = 101/135 (74%), Gaps = 2/135 (1%)
Query: 55 TLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVIT 114
+ K+ +R +S +R E D FGE+ VP DKY+GAQT RS NF IGG ERMPLP++
Sbjct: 13 VKSSYKLNIRRMNSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVH 72
Query: 115 AMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMN 173
A G LKK+AA VN+ G LD K++ AI +AADEV SGKL +HFPLV++QTGSGTQ+NMN
Sbjct: 73 AFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLD-DHFPLVVFQTGSGTQSNMN 131
Query: 174 TNEVISNRAIEILGK 188
NEVISNRAIEILG
Sbjct: 132 ANEVISNRAIEILGG 146
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 237 bits (606), Expect = 2e-75
Identities = 77/120 (64%), Positives = 92/120 (76%), Gaps = 2/120 (1%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKE 129
YRIE DT GE++VP DKY+GAQT RS NF IG + RMPL +I A G LKKAAA+ N E
Sbjct: 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLE 62
Query: 130 FG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
G L ++A AI +AA+EV+ GK +HFPLV++QTGSGTQTNMN NEVI+NRA EILGK
Sbjct: 63 LGELPEEIAKAIIQAAEEVVQGKWD-DHFPLVVFQTGSGTQTNMNVNEVIANRASEILGK 121
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 235 bits (601), Expect = 1e-74
Identities = 70/140 (50%), Positives = 94/140 (67%), Gaps = 6/140 (4%)
Query: 52 HKHTLKTLKILVRMASS--GYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMP 109
H H + TL+ + S YRIE+D+FGE+Q+ Y+GAQT RS NF I + +MP
Sbjct: 5 HHHHMGTLEAQTQGPGSMKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQ--KMP 62
Query: 110 LPVITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGT 168
+I A+ LKK AAQVN EFG L+ K+A +I KA D +++G+ ++FPLV+WQTGSGT
Sbjct: 63 KILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFE-DNFPLVVWQTGSGT 121
Query: 169 QTNMNTNEVISNRAIEILGK 188
QTNMN NEVI++ A E L
Sbjct: 122 QTNMNMNEVIASIANEELTG 141
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 232 bits (595), Expect = 7e-74
Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 4/122 (3%)
Query: 68 SGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVN 127
+ R E D+ G + VP DK +GAQT RS +F I E +MP +I A+ K+AAA+VN
Sbjct: 2 NTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTE--KMPTSLIHALALTKRAAAKVN 59
Query: 128 KEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEIL 186
++ G L + A AI +AADEV++G+ + FPL IWQTGSGTQ+NMN NEV++NRA E+L
Sbjct: 60 EDLGLLSEEKASAIRQAADEVLAGQHD-DEFPLAIWQTGSGTQSNMNMNEVLANRASELL 118
Query: 187 GK 188
G
Sbjct: 119 GG 120
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 232 bits (593), Expect = 2e-73
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 52 HKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLP 111
H H + TL+ + S R E D+ GE +P D Y+G QT+R+ NF +
Sbjct: 5 HHHHMGTLEAQTQGPGSMTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPA 64
Query: 112 VITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQT 170
++ A+ +KKAAA N + L AI A D++I G L E F + ++Q G+GT +
Sbjct: 65 LVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLM-EQFVVDVFQGGAGTSS 123
Query: 171 NMNTNEVISNRAIEILGK 188
NMN NEVI+NRA+E LG+
Sbjct: 124 NMNANEVIANRALEHLGR 141
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 227 bits (581), Expect = 8e-72
Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQV 126
++ RIE D GE ++P D YYG QT+R+T NFPI G R+ +I ++G +KK+AA
Sbjct: 2 NTDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALA 59
Query: 127 NKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
N E G LD +V I KAADEVI GK + F + Q G+GT NMN NEVI+NRA+E+
Sbjct: 60 NMEVGLLDKEVGQYIVKAADEVIEGKWN-DQFIVDPIQGGAGTSINMNANEVIANRALEL 118
Query: 186 LGK 188
+G+
Sbjct: 119 MGE 121
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 227 bits (580), Expect = 3e-71
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 63 VRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKA 122
V S+ YRIE DT GE++VP + AQT R+ NFPI G + I A+G LK A
Sbjct: 25 VDADSANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGR--GLERTQIRALGLLKGA 82
Query: 123 AAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNR 181
AQVN + G L + ADAI AA E+ G+ + FP+ ++QTGSGT +NMNTNEVI++
Sbjct: 83 CAQVNSDLGLLAPEKADAIIAAAAEIADGQH-DDQFPIDVFQTGSGTSSNMNTNEVIASI 141
Query: 182 AIEILGKNTV 191
A + G T+
Sbjct: 142 AAK--GGVTL 149
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 223 bits (570), Expect = 5e-70
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQV 126
S+ RIE D G +VP D YYG T+R+ NF I + M +KKAAA
Sbjct: 2 SNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMA 61
Query: 127 NKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
NKE + VA+AI A DEV++ + FP+ ++Q G+GT NMNTNEV++N +E+
Sbjct: 62 NKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL 121
Query: 186 LGK 188
+G
Sbjct: 122 MGH 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 6e-07
Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 86/229 (37%)
Query: 9 GKKIEIS------NF----PP-TLHAHEGCL---KLPHHF-----PHAQRQERPRMAYL- 48
GK++EIS N PP +L+ L K P P ++R+ + +L
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 49 --SPVHKHTLK--TLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGE 104
SP H H L + I + + A ++Q+P V T + G
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAK---DIQIP---------VYDTFD----GS 466
Query: 105 TERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLY--------AEH 156
R L +++ I D +I + A H
Sbjct: 467 DLR-----------------------VLSGSISERI---VDCIIRLPVKWETTTQFKATH 500
Query: 157 F----PLVIWQTGSGTQTNMNTN----EVISNRAIEILGKNTVLGWFSQ 197
P +G G T+ N + VI ++I + G F Q
Sbjct: 501 ILDFGPGGA--SGLGVLTHRNKDGTGVRVIVAGTLDI-NPDDDYG-FKQ 545
Score = 45.8 bits (108), Expect = 1e-05
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 70/255 (27%)
Query: 52 HKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLP 111
K + +L + G R + + +P + ++ E P+
Sbjct: 293 FVSVRKAITVLFFI---GVRCY-EAYPNTSLP------PSILEDSLE---NNEGVPSPML 339
Query: 112 VITAM--GTLKKAAAQVNKEFGLDAKVADAISKAADE-VISG---KLYAEHFPLVIWQTG 165
I+ + ++ + N +V ++ A V+SG LY L +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG----LNLTLRK 395
Query: 166 SGTQTNMNTNEV-ISNRAIEILGKNTVLGWFSQNGERLLFLPI-ADF-WQLLNPYLDRRN 222
+ + ++ + + S R ++ FS FLP+ + F LL P D N
Sbjct: 396 AKAPSGLDQSRIPFSERKLK----------FSNR-----FLPVASPFHSHLLVPASDLIN 440
Query: 223 KKNVDENVLNLSSAGSS------DSEEGEEGGGWDFVQGGQDARTLATHTSHTVTVSAKL 276
K D N+S D+ +G D R L+ S
Sbjct: 441 K---DLVKNNVSFNAKDIQIPVYDTFDGS------------DLRVLSG--------SISE 477
Query: 277 KIFDTHFTFHVQMTK 291
+I D V+
Sbjct: 478 RIVDCIIRLPVKWET 492
Score = 39.6 bits (92), Expect = 0.001
Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 88/275 (32%)
Query: 14 ISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHKHTLKTLKILVRMASSGYRIE 73
+ N P L H G ++ +R R Y + ++ G
Sbjct: 1665 VINNPVNLTIHFG----------GEKGKRIRENYSA-----------MIFETIVDGKLKT 1703
Query: 74 ADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVIT--AMGTLKKAAAQVNKEFG 131
F E+ N+ ++ F E + T A+ ++KAA + K G
Sbjct: 1704 EKIFKEI---NEHS-------TSYTF--RSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 132 L---DAKVA-------DAISKAADEVIS-----------GKLYAEHFPLVIWQTGSGTQT 170
L DA A A++ AD V+S G P ++
Sbjct: 1752 LIPADATFAGHSLGEYAALASLAD-VMSIESLVEVVFYRGMTMQVAVP-----RDELGRS 1805
Query: 171 N--M---NTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADF----WQ--------- 212
N M N V ++ + E L + V + G + I ++ Q
Sbjct: 1806 NYGMIAINPGRVAASFSQEAL-QYVVERVGKRTGW---LVEIVNYNVENQQYVAAGDLRA 1861
Query: 213 --LLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGE 245
+ L+ + +D ++ L + S + EG
Sbjct: 1862 LDTVTNVLNFIKLQKID--IIELQKSLSLEEVEGH 1894
Score = 36.2 bits (83), Expect = 0.013
Identities = 47/348 (13%), Positives = 80/348 (22%), Gaps = 142/348 (40%)
Query: 12 IEIS-NFPPTLHAHEGCLK------LPHHFPHAQRQERPR---------MAYLS-PVHKH 54
+E P L+ LP + P + Y+S V
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 55 TLKT----LKILVRMASSGYRIEAD--TF-GELQVPNDK-----------YYGAQTVRST 96
+ L + + + Y D +L ND Y A R
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA---RIM 132
Query: 97 INFPIGGETERMPLPVITAMGTLKKAA----AQVNKEFG--------LD----------A 134
P ++ +A L +A AQ+ FG +
Sbjct: 133 AKRPFDKKSN-------SA---LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 135 KVADAISKAADEVIS--------GKLYAEHFPLVIWQTGSG------------------- 167
V D I +A+ + K++ + ++ W
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 168 -TQ----------TNMNTNEVISN-RAIEILGKNTVLG--------W--FSQNGERLL-F 204
Q E+ S + + V W F + + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 205 LPIADFW-----QLLNPYLDRRNKKNVDENVLNLSSAGSSDSEEGEEG 247
L F+ P +L + DS E EG
Sbjct: 303 L----FFIGVRCYEAYP-------------NTSLPPSILEDSLENNEG 333
Score = 33.1 bits (75), Expect = 0.11
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 40 QERPRMAYLSP---VHKHTLKTLKILVRMASSGYRIEADTFGELQVPNDKYYGAQTVRST 96
+ M ++P + + L+ +V R+ T +++ N Q V
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVE------RVGKRTGWLVEIVNYNVENQQYV--- 1854
Query: 97 INFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLD-AKVADAISKAADEVISGKLY 153
G+ + T L K +D ++ ++S E + G L+
Sbjct: 1855 ----AAGDLR----ALDTVTNVLNF-----IKLQKIDIIELQKSLSL---EEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.080
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 28/120 (23%)
Query: 30 LPHHFPHAQRQERP---RMAYLSPVHKHTLKTLKILVRMASSGYRIEA---DTFGELQ-- 81
+ HH + + ER RM +L + L+ +R S+ + +T +L+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLD------FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 82 ----VPNDKYYGAQTVRSTINFPIGGETERMPLP----VITAM-----GTLKKAAAQVNK 128
ND Y + V + ++F E + + A+ ++A QV +
Sbjct: 531 KPYICDNDPKY-ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A
{Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A
1p6d_A* 1p6e_A* 2fgn_A 2huc_A
Length = 245
Score = 29.2 bits (64), Expect = 1.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 162 WQTGSGTQTNMNTNEVISNRAIEILGKNTVLGW 194
W + +N++ I NRAI+I+ +NT L
Sbjct: 1 WSAEDKHKEGVNSHLWIVNRAIDIMSRNTTLVK 33
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding
3-helical bundle FO turn helix motif, HTH motif; HET:
UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9
a.121.1.1
Length = 199
Score = 27.0 bits (60), Expect = 5.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 122 AAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFP 158
+ + D+ + I++ A V LY +FP
Sbjct: 16 TTCNLYRTHHHDSLTMENIAEQA-GVGVATLYR-NFP 50
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 27.2 bits (59), Expect = 7.5
Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 18/201 (8%)
Query: 40 QERPRMAYLSPVHKHTLKTLKILVRMASSGYRIEADT-----FGELQVPNDKYYGAQTVR 94
Q + +P+ TL+TL + GY E + L VP + + +
Sbjct: 212 QFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNVPMFRNVSLKCLT 271
Query: 95 STINFPIGGETERMPLPVITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYA 154
+ E+ M LK+ + ++A + K ++ L
Sbjct: 272 EIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNT-----NIRLAYSNGKDDEQNFIQNLS- 325
Query: 155 EHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLL 214
+ + G + +N E + +L S+ E +F ++W L
Sbjct: 326 LFLCTFLKEHGQLLEKRLNLREALMEALHYMLL-------VSEVEETEIFKICLEYWNHL 378
Query: 215 NPYLDRRNKKNVDENVLNLSS 235
L R + + + L S
Sbjct: 379 AAELYRESPFSTSASPLLSGS 399
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase;
2.60A {Mus musculus}
Length = 481
Score = 27.0 bits (59), Expect = 7.9
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 245 EEGGGWDFVQGGQDARTLATHTSHTVTVSAKLKIFDTHFT 284
+ G V GG A T+ + T K I D H+T
Sbjct: 403 QNVGTPVMVGGGVLAHTILGVAWNETTGQIKFLILDPHYT 442
>3h75_A Periplasmic sugar-binding domain protein; protein structure
initiative II (PSI II), sugar binding PROT alpha/beta
fold; 1.60A {Pseudomonas fluorescens pf-5}
Length = 350
Score = 26.7 bits (59), Expect = 9.6
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 115 AMGTLKKAAAQVNKEFGLDAKVA--DAISKAADEVISGKLYA 154
A+G ++ AA ++ ++ G D + ++ +A +I GKL
Sbjct: 217 ALGAMQ-AARELGRKPGTDLLFSGVNSSPEALQALIDGKLSV 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,457,792
Number of extensions: 265343
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 23
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)