RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16748
(291 letters)
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 164 bits (416), Expect = 4e-48
Identities = 78/117 (66%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Query: 70 YRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKE 129
+R E D FGE+ VP DKY+GAQT RS NF IGG ERMPLP++ A G LKK+AA VN+
Sbjct: 2 FRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNES 61
Query: 130 FG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
G LD K++ AI +AADEV SGKL +HFPLV++QTGSGTQ+NMN NEVISNRAIEI
Sbjct: 62 LGGLDPKISKAIQQAADEVASGKL-DDHFPLVVFQTGSGTQSNMNANEVISNRAIEI 117
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 154 bits (389), Expect = 3e-44
Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 2/115 (1%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
RIE DT GE++VP DKY+GAQT RS NF IG + RMPL +I A G LKKAAA+ N E
Sbjct: 1 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLEL 60
Query: 131 G-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIE 184
G L ++A AI +AA+EV+ GK +HFPLV++QTGSGTQTNMN NEVI+NRA E
Sbjct: 61 GELPEEIAKAIIQAAEEVVQGKW-DDHFPLVVFQTGSGTQTNMNVNEVIANRASE 114
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 152 bits (384), Expect = 1e-43
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 67 SSGYRIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQV 126
S+ RIE D G +VP D YYG T+R+ NF I + M +KKAAA
Sbjct: 2 SNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMA 61
Query: 127 NKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEI 185
NKE + VA+AI A DEV++ + FP+ ++Q G+GT NMNTNEV++N +E+
Sbjct: 62 NKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL 121
Query: 186 LGKN 189
+G
Sbjct: 122 MGHQ 125
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 151 bits (381), Expect = 4e-43
Identities = 62/119 (52%), Positives = 83/119 (69%), Gaps = 4/119 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
R E D+ G + VP DK +GAQT RS +F I E+MP +I A+ K+AAA+VN++
Sbjct: 2 RSEKDSMGAIDVPADKLWGAQTQRSLEHFRIST--EKMPTSLIHALALTKRAAAKVNEDL 59
Query: 131 G-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
G L + A AI +AADEV++G+ + FPL IWQTGSGTQ+NMN NEV++NRA E+LG
Sbjct: 60 GLLSEEKASAIRQAADEVLAGQH-DDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGG 117
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 147 bits (372), Expect = 8e-42
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 71 RIEADTFGELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAMGTLKKAAAQVNKEF 130
RIE D GE ++P D YYG QT+R+T NFPI G R+ +I ++G +KK+AA N E
Sbjct: 2 RIEKDFLGEKEIPKDAYYGVQTIRATENFPITG--YRIHPELIKSLGIVKKSAALANMEV 59
Query: 131 G-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNMNTNEVISNRAIEILGK 188
G LD +V I KAADEVI GK + F + Q G+GT NMN NEVI+NRA+E++G+
Sbjct: 60 GLLDKEVGQYIVKAADEVIEGKW-NDQFIVDPIQGGAGTSINMNANEVIANRALELMGE 117
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 62.8 bits (151), Expect = 8e-12
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 113 ITAMGTLKKAAAQVNKEFG-LDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTN 171
++ M + A AQ + G + A I +AA I + T +G N
Sbjct: 22 VSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI------DKIDFDALATATGLAGN 75
Query: 172 MNTNEVISNRAIEILGKNTVLGWFSQNGER 201
+ V AI +
Sbjct: 76 IAIPFVKQLTAIVKDADEDAARYVHWGATS 105
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 53.9 bits (128), Expect = 8e-09
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 113 ITAMGTLKKAAAQVNKEFGLDAKVADAISKAADEVISGKLYAEHFPLVIWQTGSGTQTNM 172
+ M + A A+ GL + +A I AE + T N
Sbjct: 23 LQGMLDFEAALARAEASAGL-------VPHSAVAAIEAACQAERYDTGALANAIATAGNS 75
Query: 173 NTNEVISNRAIEILGKNTVLGWFSQN 198
V + + G +
Sbjct: 76 AIPLVKALGKVIATGVPEAERYVHLG 101
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 31.1 bits (69), Expect = 0.17
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 113 ITAMGTLKKAAAQVNKEFGL-DAKVADAISKAADEVISGK 151
I A +++A +E G+ + + ++KA+
Sbjct: 24 INAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVY 63
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.8 bits (57), Expect = 0.94
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 5 CTSCGKKIEISNFPPTLHAHEGCLKLPHHF 34
C+ C K+ + + + G + HF
Sbjct: 2 CSYCNNKLSLGTY----ASLHGRIYCKPHF 27
>d1ah7a_ a.124.1.1 (A:) Bacterial phosholipase C {Bacillus cereus
[TaxId: 1396]}
Length = 245
Score = 27.4 bits (60), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 162 WQTGSGTQTNMNTNEVISNRAIEILGKNTVLGW 194
W + +N++ I NRAI+I+ +NT L
Sbjct: 1 WSAEDKHKEGVNSHLWIVNRAIDIMSRNTTLVK 33
>d1ca1a1 a.124.1.1 (A:1-249) Alpha-toxin, N-terminal domain
{Clostridium perfringens, different strains [TaxId:
1502]}
Length = 249
Score = 25.8 bits (56), Expect = 6.2
Identities = 6/66 (9%), Positives = 18/66 (27%), Gaps = 9/66 (13%)
Query: 167 GTQTNMNTNEVISNRAIEILGKNTVLGWFSQNGERLLFLPIADFWQLLNPYLDRRNKKNV 226
G T+ +I + + IL + + + ++L + +
Sbjct: 3 GKIDGTGTHAMIVTQGVSILEN---------DLSKNEPESVRKNLEILKENMHELQLGST 53
Query: 227 DENVLN 232
+
Sbjct: 54 YPDYDK 59
>d2pw9a1 c.97.1.5 (A:7-257) Uncharacterized protein DP1777
{Desulfotalea psychrophila [TaxId: 84980]}
Length = 251
Score = 25.4 bits (55), Expect = 9.0
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 4/136 (2%)
Query: 1 MNSDCTSCGK--KIEISNFPPTLHAHEGCLKLPHHFPHAQRQERPRMAYLSPVHK-HTLK 57
+ S C GK K + L + F P VH
Sbjct: 95 ITSGCGGTGKIPKEMLEGEFAPLADYCLPFAEIKSFIREALHSSPLGPQTHCVHGCGLWN 154
Query: 58 TLKILVRMASSGYRIEADTF-GELQVPNDKYYGAQTVRSTINFPIGGETERMPLPVITAM 116
++ V G D G + + A + + + R+ +P+I +
Sbjct: 155 NGRLQVYHEDVGRHNAVDKVLGSILLGRASNNSAVYTTGRLTSDMVLKCARIGIPIIMSR 214
Query: 117 GTLKKAAAQVNKEFGL 132
+ + K G
Sbjct: 215 TSPSSLGLALAKRSGA 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,064,222
Number of extensions: 47517
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 13
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)