BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16749
(821 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28824|MYLK_BOVIN Myosin light chain kinase, smooth muscle OS=Bos taurus GN=MYLK PE=1
SV=1
Length = 1176
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 119/287 (41%), Gaps = 59/287 (20%)
Query: 193 LAAKVAGAL--VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPAS--KPLAKTT---TTKT 245
L AK A L V A +G V A A T KP + KPA KPL T K
Sbjct: 81 LNAKAAEGLKPVGNAQPSGFLKPVGNAKLAD-TPKPLSSTKPAETPKPLGNVKPAETPKP 139
Query: 246 TTAAKPAISPVKKTATTTAK-PAPKPATKPA--PKPTTAAPKSTTTAP----KPAPVRKP 298
+ KPA +P +T A+ P P KPA PKP + T P KPA KP
Sbjct: 140 LGSTKPAETPKPLGSTKPAETPKPLGNVKPAETPKPLGNIKPTETPKPLGSTKPAETPKP 199
Query: 299 VASTITKTATSTVSAAPKPS-APKPAAPKKPVAAPAPKPRPATAAPA--PKPLTN---GV 352
+ ST KP+ PKP KP P P PA PKPL N
Sbjct: 200 LGST-------------KPAETPKPLGNVKPAETPKPL---GNVKPAETPKPLGNVKPAE 243
Query: 353 TKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKP---ATAKPSTTSK 409
T +PVS A ++ AKPA PLS KPA P AKP+ TSK
Sbjct: 244 TPKPVSNAKPA-----ETLKPVGNAKPAETPKPLSN----VKPAETPKLVGNAKPAETSK 294
Query: 410 PTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKS 456
P +KPA A +P +KPA E+ +P EEL+ IK+
Sbjct: 295 PLDNAKPAEAPKP-LGNAKPA---------EIPKPTGKEELKKEIKN 331
>sp|Q8FPA7|IF2_COREF Translation initiation factor IF-2 OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=infB PE=3 SV=1
Length = 964
Score = 39.7 bits (91), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 242 TTKTTTAAKPAISPVKKTATTTAKPAP-KPATKPAPKPTTAAPK-STTTAPKPA-PVRKP 298
T + TA P K T AKP P KPA APKPT A P + TAPKPA P
Sbjct: 83 TAQKPTAPTPGAVAAPKPGTAAAKPTPAKPA---APKPTAAKPAPAKPTAPKPATPAFSG 139
Query: 299 VASTITKTATSTVSAAPKPS--APKPAAPKKPVAAPAPKPRPATAAPAPKPLTN 350
+ A PKP AP+P A +P+A P PKP A AP+ N
Sbjct: 140 PTPGDAAKKAAEDKATPKPGGEAPRPNAMPRPMAKPGPKP----GARAPRVANN 189
>sp|Q4JV51|IF2_CORJK Translation initiation factor IF-2 OS=Corynebacterium jeikeium
(strain K411) GN=infB PE=3 SV=1
Length = 922
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPV 357
PVA T+ TSTV KP APKP A P A P P+P A P PKP +P
Sbjct: 105 PVAGAGTRP-TSTVKPGEKP-APKPGAKPAPKTAAKPTPKPG-AKPGPKPGGAKPGAKPG 161
Query: 358 -SATTTASRTSSSSVTSASAAKPAAPR------------VPLSQRTSAAKPATKPATAKP 404
A R +++ +S + A+ APR P S+ A K KP AK
Sbjct: 162 PKPGGRAPRVANNPFSSGAPAERPAPRPRGGQAGPGDMPRPGSRPGGAKKAGPKPGGAKQ 221
Query: 405 STTSKPTTASKPA 417
+P+ A P+
Sbjct: 222 GGGRRPSPAMMPS 234
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 72/187 (38%), Gaps = 27/187 (14%)
Query: 182 ESAEEST---ASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLA 238
ESA+ES + + A AAA + P A ++P
Sbjct: 56 ESAKESATTPSPAAKPGPKPAAKAAPKAAAKPGPKPGPKPGPQPVKNTNPVAGAGTRP-- 113
Query: 239 KTTTTKTTT--AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR 296
T+T K A KP P KTA AKP PKP KP PKP A P + KP P
Sbjct: 114 -TSTVKPGEKPAPKPGAKPAPKTA---AKPTPKPGAKPGPKPGGAKPGA-----KPGPKP 164
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPAT-------AAPAPKPLT 349
A + S+ + A +P AP+P + A P PRP + A P P
Sbjct: 165 GGRAPRVANNPFSSGAPAERP-APRPRGGQ---AGPGDMPRPGSRPGGAKKAGPKPGGAK 220
Query: 350 NGVTKRP 356
G +RP
Sbjct: 221 QGGGRRP 227
>sp|Q6NGN2|IF2_CORDI Translation initiation factor IF-2 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=infB PE=3 SV=1
Length = 953
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 260 ATTTAKPA--PKPATKPAPKPTTAAPKST----TTAPKPAPVRKPVASTITKTATSTVSA 313
++TTA P P+P KPAPKP AP+ ++ P+PAP +P + A
Sbjct: 148 SSTTATPGSMPRPQAKPAPKPGGRAPRVANNPFSSGPRPAP--RPGGGNRSGNAPRPGGG 205
Query: 314 APKPSAPKPAAPKKPVAAPAPK-PRPATAAPAPKP 347
PA + PRP P+P
Sbjct: 206 PRPGGNRPQGGQ----GGPAERAPRPGGRGGQPRP 236
>sp|Q7V5M4|IF2_PROMM Translation initiation factor IF-2 OS=Prochlorococcus marinus
(strain MIT 9313) GN=infB PE=3 SV=1
Length = 1125
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 42/230 (18%)
Query: 247 TAAKPAISPVKKTATTT--AKPAPKPATKP-APKPTTAAPK-------STTT-------- 288
TAA+P +P+ + A + P P+ A KP +P P +A K STT+
Sbjct: 147 TAARPINAPISRPAIPSRPTAPTPRSANKPSSPVPPSAGGKDPRAGQTSTTSKATTVSGG 206
Query: 289 APKPAPVRKPVASTI-------TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
P+P V +P + T K + + APKP PK+PV AP +P P
Sbjct: 207 GPRPKIVSRPQSPTAPGRSAPPAKPSIPSERKAPKPELVGRPKPKRPVVAPPSRPDPEGQ 266
Query: 342 APAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ-RTSAAKPATKPA 400
P K G++ RP+ + TS P P+ Q +T +P +
Sbjct: 267 RPDKK--RPGISPRPIGGPNQRANTSQR------------PGAPIRQGKTRPGQPRSAGN 312
Query: 401 TAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEEL 450
T + KP + + + ++P T + M +P P EL
Sbjct: 313 TLE--LVGKPIRRDRSDAGSAGRDSNNRPGAPTRPGMPTGMRKPVAPGEL 360
>sp|A2C6Q5|IF2_PROM3 Translation initiation factor IF-2 OS=Prochlorococcus marinus
(strain MIT 9303) GN=infB PE=3 SV=1
Length = 1124
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 42/230 (18%)
Query: 247 TAAKPAISPVKKTATTT--AKPAPKPATKPA-PKP------------TTAAPKSTTT--- 288
TAA+P +P+ + AT + + P P+ A KP+ P P T+ + K+TT
Sbjct: 147 TAARPVNAPISRPATPSRPSAPTPRSANKPSSPVPPSTGSKDPRAGQTSTSSKATTVSGG 206
Query: 289 APKPAPVRKPVASTI-------TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
P+P + +P + K + + APKP PK+PV AP +P P
Sbjct: 207 GPRPKIISRPQSPAAPGRSAPPAKPSIPSDRKAPKPELVGRPKPKRPVVAPPSRPEPEGQ 266
Query: 342 APAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ-RTSAAKPATKPA 400
P K G++ RP+ + T P P P+ Q +T +P +
Sbjct: 267 RPDKK--RPGISPRPIGGPNQRANT------------PQRPGAPIRQGKTRPGQPRSAGN 312
Query: 401 TAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEEL 450
T + KP + + + ++P T + M +P P EL
Sbjct: 313 TLE--LVGKPIRRDRSDAGSAGRDSNNRPGAPTRPGMPAGMRKPVAPGEL 360
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4
Length = 5068
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 212 VAVKKATAAKKTDKPGPAAKPA---------------SKPLAKTTTTKTTTAAKPAISPV 256
VA + A +PGPA PA +KP A+ + T+ +P +
Sbjct: 270 VAQQPGPAKATVQQPGPAKSPAQPAGTGKSPAQPPVTAKPPAQQAGLEKTSLQQPGPKSL 329
Query: 257 KKTATTTAKPAPKPATKPAPKPTTA-----APKSTTTAPKPAPVRKPVA-STITKT-ATS 309
+T P P PA PA +P TA P T A P P + P S KT A
Sbjct: 330 AQTPGQGKVP-PGPAKSPAQQPGTAKLPAQQPGPQTAAKVPGPTKTPAQLSGPGKTPAQQ 388
Query: 310 TVSAAPKPSAPKPA--APKKPVAAPAPKPRPATAAPA-PKP 347
P P P PA P++PVA KP+P APA P+P
Sbjct: 389 PGPTKPSPQQPIPAKPQPQQPVAT---KPQPQQPAPAKPQP 426
>sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 SV=4
Length = 3942
Score = 33.5 bits (75), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 48/238 (20%)
Query: 230 AKPASKPLAKTTTTKTTTAAKPAISPVKKTATTT-AKPAPKPATKPAPKPTTAAPKSTTT 288
A P +KPL T +KT+++A+ KKT T+ A+P PKP P T P T
Sbjct: 599 ASPQAKPLRATEPSKTSSSAQ-----EKKTVTSAKAEPVPKPP------PETTVPPGTPK 647
Query: 289 APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
A S + +T +T P P APK ++PV PKP
Sbjct: 648 A----------KSGVKRTDPATPVVKPVPEAPKGGEAEEPV---------------PKPY 682
Query: 349 TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTS 408
+ +++ P S + T + S + + V Q SA T P PS
Sbjct: 683 SQDLSRSPQSLSDTGYSSDGVSSSQSEITGVVQQEV--EQLDSAG--VTGPRPPSPSELH 738
Query: 409 KPTTASKP---ATATRPATTTSKPATTTSTDIEDEMNQP----FTPEELEAAIKSGLI 459
K ++ +P A A P+ SKP ++S+ +ED+ +P TPE ++ + G I
Sbjct: 739 KVGSSLRPSLEAQAVAPSAEWSKPPRSSSSAVEDQKRRPHSLSITPEAFDSDEELGDI 796
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.121 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,745,137
Number of Sequences: 539616
Number of extensions: 13285546
Number of successful extensions: 208647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 4979
Number of HSP's that attempted gapping in prelim test: 84191
Number of HSP's gapped (non-prelim): 45275
length of query: 821
length of database: 191,569,459
effective HSP length: 126
effective length of query: 695
effective length of database: 123,577,843
effective search space: 85886600885
effective search space used: 85886600885
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)