Query psy16749
Match_columns 821
No_of_seqs 296 out of 1655
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:00:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 5.7E-23 2E-27 199.8 13.0 132 673-806 5-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 9.2E-22 3.2E-26 191.6 10.9 128 671-805 8-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 5.4E-22 1.8E-26 191.0 7.9 128 674-806 3-145 (146)
4 1jl1_A Ribonuclease HI; RNAse 99.8 3E-21 1E-25 188.4 8.0 129 675-808 4-146 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.8 3.1E-21 1E-25 189.0 8.1 126 675-805 6-145 (158)
6 3p1g_A Xenotropic murine leuke 99.8 8.4E-21 2.9E-25 187.8 11.3 128 675-808 23-159 (165)
7 2kq2_A Ribonuclease H-related 99.8 2.8E-21 9.7E-26 187.2 6.6 130 673-808 4-140 (147)
8 1ril_A Ribonuclease H; hydrola 99.8 6.3E-21 2.1E-25 188.4 5.8 131 674-809 7-152 (166)
9 2lsn_A Reverse transcriptase; 99.8 9.9E-20 3.4E-24 180.2 11.4 130 674-805 6-163 (165)
10 3hst_B Protein RV2228C/MT2287; 99.7 8.4E-18 2.9E-22 159.3 10.1 122 675-806 3-134 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.7 1.2E-17 4.2E-22 157.3 9.7 122 675-806 3-138 (140)
12 2ehg_A Ribonuclease HI; RNAse 99.7 2.9E-17 9.9E-22 158.1 10.4 125 676-807 2-136 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 2E-17 6.8E-22 191.2 10.4 122 671-803 432-555 (555)
14 2zd1_A Reverse transcriptase/r 99.7 1.9E-17 6.5E-22 191.5 7.8 121 671-802 435-557 (557)
15 1zbf_A Ribonuclease H-related 99.2 2.4E-12 8.2E-17 124.5 2.5 121 672-796 8-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 1.4E-10 4.9E-15 110.9 7.5 102 673-776 3-114 (134)
17 1rw3_A POL polyprotein; RNA an 70.3 3.5 0.00012 46.0 4.9 74 674-750 345-427 (455)
18 2zd1_B P51 RT; P51/P66, hetero 43.9 27 0.00092 38.8 6.0 78 674-752 323-407 (428)
19 2z3g_A Blasticidin-S deaminase 24.1 67 0.0023 29.9 4.3 54 687-741 27-80 (130)
20 2fr5_A Cytidine deaminase; tet 20.6 93 0.0032 29.7 4.5 55 686-741 35-91 (146)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.89 E-value=5.7e-23 Score=199.84 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=107.5
Q ss_pred CCcEEEeccccccCC-----CcceEEecCCCcc-ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHH
Q psy16749 673 PNAICIYTDASKKNE-----KVGAAWFCPTYKS-KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQ 746 (821)
Q Consensus 673 ~~~i~IYTDGS~~~g-----~vGagvv~~~~~~-~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~ 746 (821)
.+.++||||||+..+ ..|+|+|+.+++. .....+...++++.|||.||+.||+++.+.+...|.||+||+++++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 467899999999843 2799999865432 3445565578999999999999999999888899999999999999
Q ss_pred HHhhccc----CCCC------CCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcC
Q psy16749 747 KLSKNCL----NTTP------THLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHG 806 (821)
Q Consensus 747 ~L~~~~~----~~~p------~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~ 806 (821)
+|..|.. ++|. ..+..++.++..++. +..|.|.|||||+|++||++||+|||+|+..+
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~--~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ--GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT--TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc--CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9998642 3333 334567888877764 46799999999999999999999999999865
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.86 E-value=9.2e-22 Score=191.63 Aligned_cols=128 Identities=24% Similarity=0.257 Sum_probs=99.4
Q ss_pred hCCCcEEEeccccccC--CCcceEEecCCCccceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHH
Q psy16749 671 KCPNAICIYTDASKKN--EKVGAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKL 748 (821)
Q Consensus 671 ~~~~~i~IYTDGS~~~--g~vGagvv~~~~~~~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L 748 (821)
...+.+.|||||||.. |..|+|+++.+++. ..+.+ ..++|++|||.|++.||+.+ ...|.|||||++++++|
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 81 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHH
Confidence 4567899999999984 45678887765432 22233 56899999999999999985 47899999999999999
Q ss_pred hhccc----CCCCC------CchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhc
Q psy16749 749 SKNCL----NTTPT------HLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVH 805 (821)
Q Consensus 749 ~~~~~----~~~p~------~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~ 805 (821)
..|.. ++|.. .+.+++.++++++. .+..|.|.|||||+|+.|||+||+||++|+..
T Consensus 82 ~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 82 TQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI-KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHT-TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 88742 33332 34567777776663 57899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.85 E-value=5.4e-22 Score=191.00 Aligned_cols=128 Identities=20% Similarity=0.120 Sum_probs=100.0
Q ss_pred CcEEEeccccccC--CCcceEEecCCCcc--ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHHh
Q psy16749 674 NAICIYTDASKKN--EKVGAAWFCPTYKS--KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKLS 749 (821)
Q Consensus 674 ~~i~IYTDGS~~~--g~vGagvv~~~~~~--~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L~ 749 (821)
..++||||||+.. +..|+|+|+..++. ..+..+ ...+++.|||.||+.||+++.+ ...|.||+||++++++|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 4689999999985 45788888754432 222333 3578999999999999999876 579999999999999998
Q ss_pred h-cc----cCCCC------CCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcC
Q psy16749 750 K-NC----LNTTP------THLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHG 806 (821)
Q Consensus 750 ~-~~----~~~~p------~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~ 806 (821)
+ |. .++|. ..+..++.++..++.. ..|.|.|||||+|+.||++||+|||+|+...
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~--~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL--HRVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH--SEEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh--CceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 7 53 34443 2345678888777753 4799999999999999999999999998754
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.83 E-value=3e-21 Score=188.39 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=101.1
Q ss_pred cEEEeccccccC--CCcceEEecCCCcc--ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHHhh
Q psy16749 675 AICIYTDASKKN--EKVGAAWFCPTYKS--KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKLSK 750 (821)
Q Consensus 675 ~i~IYTDGS~~~--g~vGagvv~~~~~~--~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L~~ 750 (821)
.+.||||||+.. +..|+|+|+...+. .....+ ...+++.|||.||+.||+++.+ ...|.|+|||++++++|..
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 588999999984 45788888754322 222333 4578999999999999999876 3799999999999999998
Q ss_pred ccc----CCC------CCCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcCCC
Q psy16749 751 NCL----NTT------PTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHGEA 808 (821)
Q Consensus 751 ~~~----~~~------p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~~~ 808 (821)
|.. ++| +..+..++.++..++. ...|.|.|||||+|+.||+.||+|||+|+.....
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT--TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc--cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 643 233 2334567777777664 4689999999999999999999999999987644
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.83 E-value=3.1e-21 Score=188.98 Aligned_cols=126 Identities=21% Similarity=0.163 Sum_probs=99.4
Q ss_pred cEEEeccccccC--CCcceEEecCCCcc--ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHHhh
Q psy16749 675 AICIYTDASKKN--EKVGAAWFCPTYKS--KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKLSK 750 (821)
Q Consensus 675 ~i~IYTDGS~~~--g~vGagvv~~~~~~--~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L~~ 750 (821)
.+.||||||+.. +..|+|+|+..++. .....+ ...+++.|||.||+.||+++.+ ...|.||+||++++++|..
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHH
Confidence 589999999984 46788888753332 222333 3578999999999999999865 3899999999999999988
Q ss_pred ccc----CCC------CCCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhc
Q psy16749 751 NCL----NTT------PTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVH 805 (821)
Q Consensus 751 ~~~----~~~------p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~ 805 (821)
|.. ++| +..+..++.++..++. +..|.|.|||||+|+.||+.||+|||+|+..
T Consensus 83 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 83 WIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ--LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT--TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccccccCCCcccCHHHHHHHHHHHc--cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 543 233 2334567777777764 4699999999999999999999999999987
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.83 E-value=8.4e-21 Score=187.85 Aligned_cols=128 Identities=25% Similarity=0.222 Sum_probs=100.6
Q ss_pred cEEEecccccc--CCCcceEEecCCCc-cceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHHhhc
Q psy16749 675 AICIYTDASKK--NEKVGAAWFCPTYK-SKACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKLSKN 751 (821)
Q Consensus 675 ~i~IYTDGS~~--~g~vGagvv~~~~~-~~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L~~~ 751 (821)
.+.||||||+. +|..|+|+++..++ ......+...++|++|||.|++.||+++ ....|.||+||++++++| |
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i--w 97 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA--H 97 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH--H
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh--h
Confidence 58999999998 45566776553333 2222244567899999999999999998 368999999999999999 4
Q ss_pred ccC-CCCCCchHHHHHHHHHHHhcCCcEEEEEecCCCC-----CcccHHHHHHHHHHhhcCCC
Q psy16749 752 CLN-TTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEG-----IKGNVEVDRLAKYATVHGEA 808 (821)
Q Consensus 752 ~~~-~~p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsG-----I~GNE~AD~LAK~A~~~~~~ 808 (821)
... +.+..+.++|+++++.+. .+..|+|+|||||+| +.|||+||+|||+|+.....
T Consensus 98 ~~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 98 VHSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp SCCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 332 234556677888877664 578999999999999 99999999999999986643
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.83 E-value=2.8e-21 Score=187.21 Aligned_cols=130 Identities=19% Similarity=0.055 Sum_probs=95.2
Q ss_pred CCcEEEeccccccCCCcceEEecCCCcc--ceee-cc--CC--CCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHH
Q psy16749 673 PNAICIYTDASKKNEKVGAAWFCPTYKS--KACF-KL--HP--ATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSAC 745 (821)
Q Consensus 673 ~~~i~IYTDGS~~~g~vGagvv~~~~~~--~~~~-~l--~~--~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL 745 (821)
.+.+.||||||+..|..|+|+|+...+. ...+ .+ .. .++|+.|||.|++.||+++.+.+. .|.||+||+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 4578999999999988899998853332 2222 22 22 368999999999999999888777 999999997555
Q ss_pred HHHhhcccCCCCCCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcCCC
Q psy16749 746 QKLSKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHGEA 808 (821)
Q Consensus 746 ~~L~~~~~~~~p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~~~ 808 (821)
+ |..++|...... .....+++++....|.|.|||||+|++||++||+|||+|+.....
T Consensus 83 ~----w~~~~w~~~~~~-~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 83 F----WATGEWKAKNEF-TQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp H----HTTSSSSCCHHH-HHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred H----HHhCCCccCCcc-hHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 4 444455544322 222222332222389999999999999999999999999987644
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.81 E-value=6.3e-21 Score=188.44 Aligned_cols=131 Identities=18% Similarity=0.090 Sum_probs=101.7
Q ss_pred CcEEEeccccccC--CCcceEEecCCCcc--ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHHh
Q psy16749 674 NAICIYTDASKKN--EKVGAAWFCPTYKS--KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKLS 749 (821)
Q Consensus 674 ~~i~IYTDGS~~~--g~vGagvv~~~~~~--~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L~ 749 (821)
..+.||||||+.. +..|+|+|+...+. .....+ ...+|+.|||.||+.||+++.+. ..|.||+||++++++|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 4688999999984 46788888754322 222222 35789999999999999988653 58999999999999998
Q ss_pred h-ccc----CCCC------CCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcCCCC
Q psy16749 750 K-NCL----NTTP------THLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHGEAS 809 (821)
Q Consensus 750 ~-~~~----~~~p------~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~~~~ 809 (821)
. |.. ++|. ..+..++.++..++. ...|.|.|||||+|+.||+.||+|||+|+......
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~~~ 152 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA--PHRVRFHFVKGHTGHPENERVDREARRQAQSQAKT 152 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT--TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSCCC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHh--cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhhcC
Confidence 8 543 2332 234567888777764 36999999999999999999999999999877543
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.80 E-value=9.9e-20 Score=180.23 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=96.3
Q ss_pred CcEEEeccccccC--CC-----cceEEecCCCc----cceeecc-CCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcch
Q psy16749 674 NAICIYTDASKKN--EK-----VGAAWFCPTYK----SKACFKL-HPATSTYTAEVIGIWEALKYSASLKNNEILILTDS 741 (821)
Q Consensus 674 ~~i~IYTDGS~~~--g~-----vGagvv~~~~~----~~~~~~l-~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDS 741 (821)
..++|||||||+. |. .|+|+|+..++ ....+.. .+..+++.||+.||..+|+.+.... ..|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 3589999999994 22 78998864322 2222322 3456777788888888887776643 579999999
Q ss_pred HHHHHHHhhccc----CCCC------CCchHHHHHHHHHHHhcCCcEEEEEecCCCCC------cccHHHHHHHHHHhhc
Q psy16749 742 KSACQKLSKNCL----NTTP------THLELEILSSYKHLQNTCKTVKLAWIKGHEGI------KGNVEVDRLAKYATVH 805 (821)
Q Consensus 742 qsAL~~L~~~~~----~~~p------~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI------~GNE~AD~LAK~A~~~ 805 (821)
+|++++|..|.. ++|. ..+.++|+++.+++. ....|.|.||+||+|+ +|||+||+||++|+..
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~-~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLS-MKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHH-HCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHh-CCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 999999987543 4443 345678888887775 3468999999999995 5899999999999864
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.73 E-value=8.4e-18 Score=159.26 Aligned_cols=122 Identities=18% Similarity=0.179 Sum_probs=93.8
Q ss_pred cEEEeccccccC--CCcceEEecCCC--c-c--ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHH
Q psy16749 675 AICIYTDASKKN--EKVGAAWFCPTY--K-S--KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQK 747 (821)
Q Consensus 675 ~i~IYTDGS~~~--g~vGagvv~~~~--~-~--~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~ 747 (821)
.++||||||+.. |..|+|+++.+. + . .....+ ..++++.||+.|++.||+++.+.+..+|.|++||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 478999999994 467888877432 2 2 122233 4679999999999999999999888999999999999999
Q ss_pred HhhcccCCCCCCchH---HHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcC
Q psy16749 748 LSKNCLNTTPTHLEL---EILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHG 806 (821)
Q Consensus 748 L~~~~~~~~p~~~s~---~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~ 806 (821)
|.+ +|...+.. ++.++..++ +.+..|.|.|||+ .+|+.||+|||+|+...
T Consensus 82 i~~----~~~~~~~~l~~~~~~i~~l~-~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 82 MSG----RWKVKHPDLLKLYVQAQALA-SQFRRINYEWVPR----ARNTYADRLANDAMDAA 134 (141)
T ss_dssp HTT----SSCCCSHHHHHHHHHHHHHH-TTSSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HhC----CcccCCHHHHHHHHHHHHHH-hcCCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence 987 23333333 344444444 4578999999994 89999999999999764
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.72 E-value=1.2e-17 Score=157.28 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=94.0
Q ss_pred cEEEeccccccC--CCcceEEecCC--Ccc--ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCC----cEEEEcchHHH
Q psy16749 675 AICIYTDASKKN--EKVGAAWFCPT--YKS--KACFKLHPATSTYTAEVIGIWEALKYSASLKNN----EILILTDSKSA 744 (821)
Q Consensus 675 ~i~IYTDGS~~~--g~vGagvv~~~--~~~--~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~----~I~I~SDSqsA 744 (821)
.++||||||+.. |..|+|+++.+ +.. .....+ ..++++.||+.||+.||+++.+.+.. +|.|++||+++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 589999999984 46788888754 222 222233 34799999999999999999987777 99999999999
Q ss_pred HHHHhhcccCCCCCC---chHHHHHHHHH-HHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcC
Q psy16749 745 CQKLSKNCLNTTPTH---LELEILSSYKH-LQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHG 806 (821)
Q Consensus 745 L~~L~~~~~~~~p~~---~s~~i~~i~~~-L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~ 806 (821)
++.|.++ |+.. ...++.++..+ + +.+..|.|.||| +.||+.||+|||+|+...
T Consensus 82 i~~i~~~----~~~~~~~l~~~~~~i~~l~~-~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 82 VRQMQGV----YKVKEPTLKEKFAKIAHIKM-ERVPNLVFVHIP----REKNARADELVNEAIDKA 138 (140)
T ss_dssp HHHHTTS----SCCCCGGGHHHHHHHHHHHH-HHCTTCEEEECC----GGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCC----cccCCHHHHHHHHHHHHHhh-cCCCcEEEEEcC----chhhHHHHHHHHHHHHhc
Confidence 9999882 2222 23456666665 4 455699999999 489999999999998753
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.70 E-value=2.9e-17 Score=158.15 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=95.1
Q ss_pred EEEecccccc-C--CCcce-EEecCCCc-cceee--ccC---CCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHH
Q psy16749 676 ICIYTDASKK-N--EKVGA-AWFCPTYK-SKACF--KLH---PATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSAC 745 (821)
Q Consensus 676 i~IYTDGS~~-~--g~vGa-gvv~~~~~-~~~~~--~l~---~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL 745 (821)
+.||||||+. . |..|+ |+++.+.+ ....+ .++ ...+|+.||+.|++.||+++.+.+..+|.|++||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999998 2 56775 87765433 22222 222 37899999999999999999998889999999999999
Q ss_pred HHHhhcccCCCCCCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHhhcCC
Q psy16749 746 QKLSKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYATVHGE 807 (821)
Q Consensus 746 ~~L~~~~~~~~p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~~~~~ 807 (821)
+.|.+|-.... .....++.++..++.+. .|.|.|||| .+|+.||+|||+|+....
T Consensus 82 ~~i~~~w~~~~-~~~~~l~~~i~~l~~~~--~v~~~~V~~----~~N~~AD~LA~~a~~~~~ 136 (149)
T 2ehg_A 82 KQMNGEYKVKA-KRIIPLYEKAIELKKKL--NATLIWVPR----EENKEADRLSRVAYELVR 136 (149)
T ss_dssp HHHTTSSCCCC-TTHHHHHHHHHHHHHHH--TCEEEECCG----GGCHHHHHHHHHHHHHHH
T ss_pred HHHhCccccCC-HHHHHHHHHHHHHHhcC--CEEEEEcCC----cccHHHHHHHHHHHHhhc
Confidence 99998522111 23446777777776544 599999998 589999999999997653
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.70 E-value=2e-17 Score=191.23 Aligned_cols=122 Identities=25% Similarity=0.285 Sum_probs=97.4
Q ss_pred hCCCcEEEeccccccC--CCcceEEecCCCccceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHH
Q psy16749 671 KCPNAICIYTDASKKN--EKVGAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKL 748 (821)
Q Consensus 671 ~~~~~i~IYTDGS~~~--g~vGagvv~~~~~~~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L 748 (821)
...+.+.||||||+.. |..|+|+++..++.. ...+ ...+|+.||+.|++.||+. +...+.|++||++|+++|
T Consensus 432 p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i 505 (555)
T 1mu2_A 432 PIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIV 505 (555)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHH
T ss_pred CCCCceEEEEcccccCCCCCceEEEEEEeCCEe-eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHH
Confidence 3466799999999984 346788877654322 2333 4679999999999999998 568999999999999999
Q ss_pred hhcccCCCCCCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHHh
Q psy16749 749 SKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYAT 803 (821)
Q Consensus 749 ~~~~~~~~p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A~ 803 (821)
++|.. ..+..++.++++++. .+..|.|.|||||+|+.|||+||+|||+|+
T Consensus 506 ~~~~~----~~~~~l~~~~~~~~~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 506 ASQPT----ESESKIVNQIIEEMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HTCCS----EESCHHHHHHHHHHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred hcccc----cccHHHHHHHHHHhc-cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 98543 234567777777664 367899999999999999999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.68 E-value=1.9e-17 Score=191.47 Aligned_cols=121 Identities=25% Similarity=0.284 Sum_probs=93.9
Q ss_pred hCCCcEEEeccccccC--CCcceEEecCCCccceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHH
Q psy16749 671 KCPNAICIYTDASKKN--EKVGAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKL 748 (821)
Q Consensus 671 ~~~~~i~IYTDGS~~~--g~vGagvv~~~~~~~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L 748 (821)
...+.+.||||||+.. |..|+|+++..++. ..+.+ ..++|+.||+.||+.||+++ ...+.|++||++|+++|
T Consensus 435 p~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~-~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i 508 (557)
T 2zd1_A 435 PIVGAETFYVDGAANRETKLGKAGYVTNKGRQ-KVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 508 (557)
T ss_dssp CCTTSCEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCceEEEEEEECCcE-EEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHH
Confidence 3456799999999984 44678887764432 22233 46799999999999999998 57899999999999999
Q ss_pred hhcccCCCCCCchHHHHHHHHHHHhcCCcEEEEEecCCCCCcccHHHHHHHHHH
Q psy16749 749 SKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYA 802 (821)
Q Consensus 749 ~~~~~~~~p~~~s~~i~~i~~~L~~~~~~V~~~WVPGHsGI~GNE~AD~LAK~A 802 (821)
++|.. ..+..++.++++.+.+ ...|.|.|||||+|+.|||+||+|||+|
T Consensus 509 ~~~~~----~~~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 509 QAQPD----KSESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp TTCCS----EESSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred hcCCc----cCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 98432 1245677777766654 4689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.22 E-value=2.4e-12 Score=124.45 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=86.8
Q ss_pred CCCcEEEeccccccC--CCcceEEecCCCccc--eeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHH
Q psy16749 672 CPNAICIYTDASKKN--EKVGAAWFCPTYKSK--ACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQK 747 (821)
Q Consensus 672 ~~~~i~IYTDGS~~~--g~vGagvv~~~~~~~--~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~ 747 (821)
..+.+.||+||||.. |..|+|+|+...+.. ....+ ...+|+.|||+|++.||+++.+.+. .|.|++||++|++.
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w 85 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKW 85 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHH
Confidence 346788999999984 567888887633222 22223 2578999999999999999998776 99999999999999
Q ss_pred HhhcccCC---CCCCchHHHHHHHH---HHHhcCCcEEEEEecCCCCCcccHHHH
Q psy16749 748 LSKNCLNT---TPTHLELEILSSYK---HLQNTCKTVKLAWIKGHEGIKGNVEVD 796 (821)
Q Consensus 748 L~~~~~~~---~p~~~s~~i~~i~~---~L~~~~~~V~~~WVPGHsGI~GNE~AD 796 (821)
+.++..+. .+..+.++++.+.+ .++. ..+...+|+.|.+.-||.-||
T Consensus 86 ~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 86 VKDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTC
T ss_pred HHcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCccc
Confidence 98843221 12344556555443 4544 355566677799888998888
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.08 E-value=1.4e-10 Score=110.94 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=69.8
Q ss_pred CCcEEEeccccccC--CCcceEE-ecCCCcc-ceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcchHHHHHHH
Q psy16749 673 PNAICIYTDASKKN--EKVGAAW-FCPTYKS-KACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDSKSACQKL 748 (821)
Q Consensus 673 ~~~i~IYTDGS~~~--g~vGagv-v~~~~~~-~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDSqsAL~~L 748 (821)
.+...|||||||+. |..|+|+ ++.++.. .....+ ...||++|||+|++.||+.+.+.+.. +.|+|||++|++.|
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 34567999999994 4567744 4443332 222333 36899999999999999999886544 89999999999999
Q ss_pred hhcccCC---CCCCchHHHHHHH---HHHHhcCC
Q psy16749 749 SKNCLNT---TPTHLELEILSSY---KHLQNTCK 776 (821)
Q Consensus 749 ~~~~~~~---~p~~~s~~i~~i~---~~L~~~~~ 776 (821)
.+|..+. .+..+.++++++. ..|+....
T Consensus 81 ~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~ 114 (134)
T 4htu_A 81 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTY 114 (134)
T ss_dssp HHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCCC
T ss_pred HcCCcccCCCCCccCHHHHHHHHHHHHHHHhCCC
Confidence 9865432 2334556666555 34544433
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=70.33 E-value=3.5 Score=45.98 Aligned_cols=74 Identities=11% Similarity=-0.000 Sum_probs=46.3
Q ss_pred CcEEEeccccccCCCcceEEecCCCc--c---ceeecc---CCCCCcchhHHHHHHHHHHHHHhc-CCCcEEEEcchHHH
Q psy16749 674 NAICIYTDASKKNEKVGAAWFCPTYK--S---KACFKL---HPATSTYTAEVIGIWEALKYSASL-KNNEILILTDSKSA 744 (821)
Q Consensus 674 ~~i~IYTDGS~~~g~vGagvv~~~~~--~---~~~~~l---~~~~T~~~AEL~AI~~ALe~a~~~-~~~~I~I~SDSqsA 744 (821)
..+++|||+|.. ++|+......++ . ..+..+ ....+.+.-|++||..|++.+... .+..+.|+||+. +
T Consensus 345 ~~~~l~~DAS~~--~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~ 421 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-V 421 (455)
T ss_dssp CTTSCEEEEEEC--SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-T
T ss_pred CcEEEEEeccCC--cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-H
Confidence 357899999853 444322222111 1 112222 234578899999999999988764 457999999996 4
Q ss_pred HHHHhh
Q psy16749 745 CQKLSK 750 (821)
Q Consensus 745 L~~L~~ 750 (821)
+..|.+
T Consensus 422 ~~~l~~ 427 (455)
T 1rw3_A 422 EALVKQ 427 (455)
T ss_dssp TTTSSS
T ss_pred HHHhCC
Confidence 444433
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=43.93 E-value=27 Score=38.78 Aligned_cols=78 Identities=5% Similarity=-0.086 Sum_probs=44.4
Q ss_pred CcEEEeccccccCCCcceEEecCCCccceeeccC--CCCCcchhHHHH-HHHHHHHHHhc--C--CCcEEEEcchHHHHH
Q psy16749 674 NAICIYTDASKKNEKVGAAWFCPTYKSKACFKLH--PATSTYTAEVIG-IWEALKYSASL--K--NNEILILTDSKSACQ 746 (821)
Q Consensus 674 ~~i~IYTDGS~~~g~vGagvv~~~~~~~~~~~l~--~~~T~~~AEL~A-I~~ALe~a~~~--~--~~~I~I~SDSqsAL~ 746 (821)
..+.+|+|+|.. |.+|+.+...++....+..+. .....+.-|++| |+.||+...-. | ...++++||.+...-
T Consensus 323 ~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~ 401 (428)
T 2zd1_B 323 KDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETW 401 (428)
T ss_dssp SCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHH
T ss_pred CCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHH
Confidence 358899999953 333433333222223333332 233455567777 99999876643 2 245678899986544
Q ss_pred HHhhcc
Q psy16749 747 KLSKNC 752 (821)
Q Consensus 747 ~L~~~~ 752 (821)
....|+
T Consensus 402 ~~~~~q 407 (428)
T 2zd1_B 402 WTEYWQ 407 (428)
T ss_dssp HHHHCC
T ss_pred HHhccc
Confidence 444443
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=24.14 E-value=67 Score=29.94 Aligned_cols=54 Identities=15% Similarity=0.000 Sum_probs=36.1
Q ss_pred CCcceEEecCCCccceeeccCCCCCcchhHHHHHHHHHHHHHhcCCCcEEEEcch
Q psy16749 687 EKVGAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILILTDS 741 (821)
Q Consensus 687 g~vGagvv~~~~~~~~~~~l~~~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDS 741 (821)
-.+|++++..+++++....+..+.-...||..||..|+.. -......+.|++|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 3678888877776654444433344678999999999874 22245677888874
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=20.59 E-value=93 Score=29.69 Aligned_cols=55 Identities=20% Similarity=0.062 Sum_probs=37.3
Q ss_pred CCCcceEEecCCCccceeeccCC--CCCcchhHHHHHHHHHHHHHhcCCCcEEEEcch
Q psy16749 686 NEKVGAAWFCPTYKSKACFKLHP--ATSTYTAEVIGIWEALKYSASLKNNEILILTDS 741 (821)
Q Consensus 686 ~g~vGagvv~~~~~~~~~~~l~~--~~T~~~AEL~AI~~ALe~a~~~~~~~I~I~SDS 741 (821)
+..+|++++..++++.....+.. +.-...||..||..|+.. -......+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 34788888877776655444432 223567999999999875 23345788899874
Done!