RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16749
(821 letters)
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse
transcriptases. Ribonuclease H (RNase H) is classified
into two families, type 1 (prokaryotic RNase HI,
eukaryotic RNase H1 and viral RNase H) and type 2
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2). Ribonuclease HI (RNase HI) is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is widely present
in various organisms, including bacteria, archaea and
eukaryotes. RNase HI has also been observed as an
adjunct domain to the reverse transcriptase gene in
retroviruses, long-term repeat (LTR)-bearing
retrotransposons and non-LTR retrotransposons. RNase HI
in LTR retrotransposons perform degradation of the
original RNA template, generation of a polypurine tract
(the primer for plus-strand DNA synthesis), and final
removal of RNA primers from newly synthesized minus and
plus strands. The catalytic residues for RNase H
enzymatic activity, three aspartatic acids and one
glutamatic acid residue (DEDD), are unvaried across all
RNase H domains. The position of the RNase domain of
non-LTR and LTR transposons is at the carboxyl terminal
of the reverse transcriptase (RT) domain and their RNase
domains group together, indicating a common evolutionary
origin. Many non-LTR transposons have lost the RNase
domain because their activity is at the nucleus and
cellular RNase may suffice; however LTR retotransposons
always encode their own RNase domain because it requires
RNase activity in RNA-protein particles in the
cytoplasm. RNase H inhibitors have been explored as an
anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 128
Score = 103 bits (260), Expect = 3e-26
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 677 CIYTDASKKNEKVGAAWFCP-TYKSKACFKLHPATSTYTAEVIGIWEALKYSASLKNN-- 733
IYTD SK + GA + +KL P S + AE++ I EAL+ +
Sbjct: 1 VIYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRAR 60
Query: 734 EILILTDSKSACQKLSKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIKGNV 793
+I I +DS++A + L + + L L I + + L N V+L W+ GH GI+GN
Sbjct: 61 KITIFSDSQAALKALRSP---RSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEGNE 117
Query: 794 EVDRLAKYAT 803
DRLAK A
Sbjct: 118 RADRLAKEAA 127
>gnl|CDD|215695 pfam00075, RNase_H, RNase H. RNase H digests the RNA strand of an
RNA/DNA hybrid. Important enzyme in retroviral
replication cycle, and often found as a domain
associated with reverse transcriptases. Structure is a
mixed alpha+beta fold with three a/b/a layers.
Length = 126
Score = 73.1 bits (180), Expect = 2e-15
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 673 PNAICIYTDAS-KKNEKVGAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSASLK 731
P A+ +YTD S N G A + T K K P T+ AE++ + EAL+ +L
Sbjct: 1 PEAVTVYTDGSCNGNPGPGGAGYV-TDGGKQRSKPLPGTTNQRAELLALIEALE---ALS 56
Query: 732 NNEILILTDSKSACQKLSKNCLNTT-PTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIK 790
++ I TDS+ ++ + ++ EI + LQ V + W+ GH GI
Sbjct: 57 GQKVNIYTDSQYVIGGITNGWPTKSESKPIKNEIW---ELLQKK-HKVYIQWVPGHSGIP 112
Query: 791 GNVEVDRLAK 800
GN D+LAK
Sbjct: 113 GNELADKLAK 122
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 79.9 bits (197), Expect = 3e-15
Identities = 62/252 (24%), Positives = 91/252 (36%), Gaps = 13/252 (5%)
Query: 184 AEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTT 243
A + A++ + A A+ AAGAA+A K A AA T P A PA T
Sbjct: 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAP---PATADR 438
Query: 244 KTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTI 303
A A PV A A + + A P + S + P A
Sbjct: 439 GDDAADGDA--PVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRA 496
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
+ +T +A P AP AA ++ A A P P P P +A
Sbjct: 497 AAPSAATPAAVPDARAPA-AASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDV 555
Query: 364 SRTSSSSVTS------ASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPA 417
R + V+S A+AAKPAA + + +A + A + T + + + A
Sbjct: 556 LRNAGMRVSSDRGARAAAAAKPAAAP-AAAPKPAAPRVAVQVPTPRARAATGDAPPNGAA 614
Query: 418 TATRPATTTSKP 429
A + A + P
Sbjct: 615 RAEQAAESRGAP 626
Score = 79.1 bits (195), Expect = 4e-15
Identities = 64/277 (23%), Positives = 85/277 (30%), Gaps = 39/277 (14%)
Query: 167 PLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKP 226
P VP A A + A A A+ A AA A A A A +
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATR----- 422
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
A PA+ T A A PV A A + + A P + S
Sbjct: 423 -AEAPPAAPAPPATADRGDDAADGDA--PVPAKANARASADSRCDERDAQPPADSGSASA 479
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK 346
+ P A + +T +A P AP AA ++ A A P P P P
Sbjct: 480 PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA-AASREDAPAAAAPPAPEARPPTP- 537
Query: 347 PLTNGVTKRPVSATTTASRTSSSSVTSASAA----KPAAPRVPLSQRTSAAKPATKPATA 402
A+ ++ A+AA + A RV S R + A A KPA A
Sbjct: 538 ----------------AAAAPAARAGGAAAALDVLRNAGMRVS-SDRGARAAAAAKPAAA 580
Query: 403 KPSTTSKPTTASKPATATRPATTTSKPATTTSTDIED 439
A+ A R A P +T
Sbjct: 581 PA--------AAPKPAAPRVAVQVPTPRARAATGDAP 609
Score = 78.4 bits (193), Expect = 8e-15
Identities = 56/248 (22%), Positives = 78/248 (31%), Gaps = 6/248 (2%)
Query: 174 IPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPA 233
+P +A ++A + A A A A AA A +A A P A
Sbjct: 380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAP----KSTTTA 289
A S + A+P + AP + A
Sbjct: 440 DDAADGDAPVPAKANA--RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAA 497
Query: 290 PKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
A V A S A + P P A AA AP R AA A L
Sbjct: 498 APSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLR 557
Query: 350 NGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSK 409
N + A+ + + A+A KPAAPRV + T A+ AT A + ++
Sbjct: 558 NAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAE 617
Query: 410 PTTASKPA 417
S+ A
Sbjct: 618 QAAESRGA 625
Score = 65.6 bits (160), Expect = 8e-11
Identities = 50/219 (22%), Positives = 68/219 (31%), Gaps = 33/219 (15%)
Query: 202 VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTAT 261
V G A G V + A A P P A+ A+ A +A PA++ V T
Sbjct: 362 VTGGGAPGGGVPARVAGAV-----PAPGARAAAAVGA---------SAVPAVTAV--TGA 405
Query: 262 TTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPK 321
A APK A A A P + A + A+ +
Sbjct: 406 AGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDE 465
Query: 322 PAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAA 381
A +P A PA+ AP A A+ ++++ A PAA
Sbjct: 466 RDA--QPPADSGSASAPASDAPPDAAFE--------PAPRAAAPSAATPAAVPDARAPAA 515
Query: 382 PRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATAT 420
R A A PA T P A+ A A
Sbjct: 516 A-----SREDAPAAAAPPAPEARPPT--PAAAAPAARAG 547
Score = 62.6 bits (152), Expect = 7e-10
Identities = 50/245 (20%), Positives = 74/245 (30%), Gaps = 17/245 (6%)
Query: 149 AVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAA 208
A + P + E P P P T + +++ A D A +
Sbjct: 408 AALAPKAAAAAAATRAEAP----PAAPAPPATADRGDDA-ADGDAPVPAKANARASADSR 462
Query: 209 GAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP 268
+ + P A P + + A A+ + A + + AP
Sbjct: 463 CDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522
Query: 269 KPATKPAPK-----PTTAAPKSTTTAPKPA-PVRKPVASTITKTATSTVSAAPKPSAPKP 322
A PAP+ P AAP + A V + ++ + +AA KP+A
Sbjct: 523 AAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPA 582
Query: 323 AAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
AAPK PR A P P+ P A S P
Sbjct: 583 AAPKPAA------PRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDD 636
Query: 383 RVPLS 387
VPLS
Sbjct: 637 YVPLS 641
Score = 59.9 bits (145), Expect = 4e-09
Identities = 40/200 (20%), Positives = 53/200 (26%), Gaps = 25/200 (12%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A +PA++ P + A S A
Sbjct: 357 AFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTG------------ 404
Query: 308 TSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA----------APAPKPLTNGVTKRPV 357
AA P A AA + A PA PATA AP P +
Sbjct: 405 --AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462
Query: 358 SATTTASRTSSSSVTSASAA-KPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
A + S SA A+ P + R +A AT A + + P
Sbjct: 463 CDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522
Query: 417 ATATRPATTTSKPATTTSTD 436
A A PA P +
Sbjct: 523 AAAAPPAPEARPPTPAAAAP 542
Score = 49.5 bits (118), Expect = 6e-06
Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 10/148 (6%)
Query: 313 AAPKP---SAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS 369
A P P +A A P A AA APK R + + +++
Sbjct: 379 AVPAPGARAAAAVGASAVPAVTAVTG--AAGAALAPKAAAAAAATRAEAPPAAPAPPATA 436
Query: 370 SVTSASAAKPAAPR----VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATT 425
+A A S + + +P + S P + + P A PA
Sbjct: 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAPASDAPPDAAFEPAPR 495
Query: 426 TSKPATTTSTDIEDEMNQPFTPEELEAA 453
+ P+ T + D E A
Sbjct: 496 AAAPSAATPAAVPDARAPAAASREDAPA 523
Score = 47.5 bits (113), Expect = 3e-05
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 9/146 (6%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
V+ P PA V AP + A A A V+ A+ ++
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPA------VTAVTGAAGAALAPKAA 415
Query: 371 VTSASAAKPAAPR--VPLSQRTSAAKPATKPATA-KPSTTSKPTTASKPATATRPATTTS 427
+A+ A P P + A A + + +P +
Sbjct: 416 AAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475
Query: 428 KPATTTSTDIEDEMNQPFTPEELEAA 453
+ S D +P +A
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSA 501
Score = 33.3 bits (76), Expect = 0.70
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 359 ATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPAT 418
A T + A PA + ++A PA T P A+ A
Sbjct: 361 AVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA-AAA 419
Query: 419 ATRPATTTSKPATTTSTDIEDE 440
ATR + PA + D D+
Sbjct: 420 ATRAEAPPAAPAPPATADRGDD 441
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 77.3 bits (190), Expect = 3e-14
Identities = 62/283 (21%), Positives = 80/283 (28%), Gaps = 37/283 (13%)
Query: 217 ATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT-KPA 275
+ D P P P P A + T A A PA P
Sbjct: 2693 GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVAS-----TITKTATSTVSAAPKPSAPKPAAPKKPVA 330
A P +T P PAP P A T A+ + S PS PA P V
Sbjct: 2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812
Query: 331 APA-----------PKPRPATAAPAPKPLTNG-----------------VTKRPVSATTT 362
APA P P P +A P P G V +RP S +
Sbjct: 2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA 2872
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQ---RTSAAKPATKPATAKPSTTSKPTTASKPATA 419
A + + A+PA R S +P A P +P +P
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932
Query: 420 TRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTP 462
P P T+ P+ A+ G + P
Sbjct: 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
Score = 73.8 bits (181), Expect = 3e-13
Identities = 51/233 (21%), Positives = 74/233 (31%), Gaps = 23/233 (9%)
Query: 204 GAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTK-TTTAAKPAISPVKKTATT 262
+ A + +P A + A + + AA+P + + T+
Sbjct: 2642 PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL----TS 2697
Query: 263 TAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKP 322
A P P P T P P P +T P PA R+ + + AP P
Sbjct: 2698 LADPPPPPPT-PEPAPHALVS-ATPLPPGPAAARQASPAL-------PAAPAPPAVPAGP 2748
Query: 323 AAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
A P PA RP T A P P T +S S + S P P
Sbjct: 2749 ATP----GGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
Query: 383 RVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
P + + A A P A P+ P T+++P P P +
Sbjct: 2805 ADPPAAVLAPA--AALPPAASPAGPLPPPTSAQPTA---PPPPPGPPPPSLPL 2852
Score = 68.4 bits (167), Expect = 1e-11
Identities = 54/257 (21%), Positives = 78/257 (30%), Gaps = 22/257 (8%)
Query: 226 PGPAAKP-ASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPK----PATKPAPKPTT 280
PA A +P A + + P + P P P+P
Sbjct: 2578 SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANE 2637
Query: 281 AAPKSTTTAPKPA-PVRKPVASTITKT-ATSTVSAAPKPSAPKPAAPKKPVAAPA----- 333
P T P P P P +++ + A + S+P P P++ A P
Sbjct: 2638 PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAARPTVGSLT 2696
Query: 334 ----PKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
P P P T PAP L + P A + + + A A PA P P
Sbjct: 2697 SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQA-SPALPAAPAPPAVPAGPATPGGPA 2755
Query: 390 TSAAKPAT----KPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPF 445
A P T PA P ++PA A+ + S P+ D + P
Sbjct: 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815
Query: 446 TPEELEAAIKSGLITTP 462
A+ L
Sbjct: 2816 AALPPAASPAGPLPPPT 2832
Score = 68.0 bits (166), Expect = 2e-11
Identities = 63/345 (18%), Positives = 89/345 (25%), Gaps = 38/345 (11%)
Query: 104 PKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAE 163
P+ V TS+ D P E +P V A P + A
Sbjct: 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV----------SATPLPPGPAAARQAS 2732
Query: 164 KETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKT 223
P + P A A A A A A ++
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTA---------GPPAPAPPAAPAAGPPRRL 2783
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAP 283
PA S+ + A+ A PA P P PT+A P
Sbjct: 2784 --TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG-----PLPPPTSAQP 2836
Query: 284 KSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP----VAAPAPKPRPA 339
+ P P P P+ ++ + A KPAAP +P +A PA
Sbjct: 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896
Query: 340 TAA---PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ-----RTS 391
+ A P+ P +P P P + S
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
Query: 392 AAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
A P P + P +R A +S P T +
Sbjct: 2957 GAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSL 3001
Score = 60.7 bits (147), Expect = 3e-09
Identities = 64/386 (16%), Positives = 106/386 (27%), Gaps = 24/386 (6%)
Query: 96 EKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTD 155
TPE + L P + P A P+ P
Sbjct: 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG-----GPARPAR 2759
Query: 156 ETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVK 215
+ P + P T + + S + AA A A+
Sbjct: 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819
Query: 216 KATAAKKTDKPGPAAKPASKPLAK--TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK 273
A + P +A+P + P + + V++ + + PA KPA
Sbjct: 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAP 2878
Query: 274 PAPK----PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
P A +ST + P + P P P+P P P
Sbjct: 2879 ARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
Query: 330 AAPAPKPRPATAA------PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
P P A P+P + V+ + S + +++ P
Sbjct: 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
Query: 384 VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIE----- 438
LS+ +S A P S T P + + + +D+E
Sbjct: 2999 HSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPL 3058
Query: 439 -DEMNQPFTPEELEAAIKSGLITTPG 463
E + PF E A ++G +P
Sbjct: 3059 PPEPHDPFAHEPDPATPEAGARESPS 3084
Score = 57.6 bits (139), Expect = 2e-08
Identities = 46/206 (22%), Positives = 56/206 (27%), Gaps = 10/206 (4%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
A + P P+PA +P+ T+ + P+ A R PV A P P
Sbjct: 2563 APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR----GDPRGPAPPSPLP 2618
Query: 320 PKPAAPKKPVAAPAPKPRP-ATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
P AP P P P P A P T +RP R S
Sbjct: 2619 PDTHAPD----PPPPSPSPAANEPDPHPPPTVPPPERPRDD-PAPGRVSRPRRARRLGRA 2673
Query: 379 PAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIE 438
A P R AA+P T+ P T A AT
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP 2733
Query: 439 DEMNQPFTPEELEAAIKSGLITTPGR 464
P P G P R
Sbjct: 2734 ALPAAPAPPAVPAGPATPGGPARPAR 2759
Score = 54.6 bits (131), Expect = 2e-07
Identities = 48/239 (20%), Positives = 70/239 (29%), Gaps = 27/239 (11%)
Query: 252 AISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTI-----TKT 306
A P A P P P+ AP P PV + + I +
Sbjct: 2486 ARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELAS 2545
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
+ P P A PAAP + V P P PRP+ A + +
Sbjct: 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR 2605
Query: 367 SSSSVTSASAAKP---AAPRVPLSQRTSAAKPATKPATAK------------PSTTSKPT 411
+ + P AP P + AA P S+P
Sbjct: 2606 GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR 2665
Query: 412 TASKPATATRPATTT-------SKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPG 463
A + A + ++ ++P + T + D P TPE A+ S PG
Sbjct: 2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724
Score = 48.4 bits (115), Expect = 2e-05
Identities = 56/239 (23%), Positives = 72/239 (30%), Gaps = 44/239 (18%)
Query: 249 AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
A PA PV A + AT P P P AAP P V A
Sbjct: 253 AAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDG------VWGAALAGAP 306
Query: 309 STVSAAPKPSAPKPAAPKK---------PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSA 359
+ A P P P PA + V +P P+PR PK +RP
Sbjct: 307 LALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPK------RRRP--- 357
Query: 360 TTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATK------------PATAKPSTT 407
+ T SS+ SA + R L R + A P
Sbjct: 358 ----TWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPA 413
Query: 408 SKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPGRDN 466
S PT A P A+ P PAT + + P P E + + D+
Sbjct: 414 SVPTPAPTPVPASAPP----PPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDD 468
Score = 40.7 bits (95), Expect = 0.004
Identities = 43/238 (18%), Positives = 65/238 (27%), Gaps = 28/238 (11%)
Query: 198 AGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKP-------LAKTTTTKTTTAAK 250
A VVG A A + AT + A+ P LA
Sbjct: 256 APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDP 315
Query: 251 PAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATST 310
P +P + P P+P P PK R+P + + +
Sbjct: 316 PPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYP---LGFPKR---RRPTWTPPSSLEDLS 369
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
A P ++ A P + RP + + T + +
Sbjct: 370 AGRHHPKRASLPTRKRRSA--------RHAATPFARGPGGDDQTRPAAPVPASVPTPAPT 421
Query: 371 VTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
ASA P A +P ++ S PA P +P + P T K
Sbjct: 422 PVPASAPPPPATPLPSAEPGSDDGPAPPPE-------RQPPAPATEPAPDDPDDATRK 472
Score = 36.8 bits (85), Expect = 0.066
Identities = 51/263 (19%), Positives = 65/263 (24%), Gaps = 43/263 (16%)
Query: 150 VVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAG 209
VV + ETA T P E+ A + AA G V GAA AG
Sbjct: 260 VVGEGADRAPETARGATGPPPPP-------------EAAAPNGAAAPPDG--VWGAALAG 304
Query: 210 AAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPV------------K 257
A +A P P P P A +SP+ K
Sbjct: 305 APLA-----------LPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPK 353
Query: 258 KTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP 317
+ T P+ A T P A + +A
Sbjct: 354 RRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPA 413
Query: 318 SAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAA 377
S P PA P +AP P P +A + A
Sbjct: 414 SVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKA 473
Query: 378 KPAAPRVPLSQRTSAAKPATKPA 400
A L +R P A
Sbjct: 474 LDA-----LRERRPPEPPGADLA 491
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 69.9 bits (171), Expect = 3e-12
Identities = 60/231 (25%), Positives = 76/231 (32%), Gaps = 14/231 (6%)
Query: 200 ALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT 259
A G + GA A A AA AA PA+ A AA A + +
Sbjct: 362 AFRPGQSGGGAGPA--TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAV 419
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
A A+ +P P A + +A AP PAP P A+ A AA +A
Sbjct: 420 AAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA 479
Query: 320 PKPAAPKKPVAAPAPKPR---------PATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
P AA P AAPAP P A+PAP + +
Sbjct: 480 PARAA---PAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536
Query: 371 VTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR 421
A PAA P + + A +P A S PA A R
Sbjct: 537 AFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAAR 587
Score = 68.0 bits (166), Expect = 1e-11
Identities = 48/214 (22%), Positives = 63/214 (29%), Gaps = 6/214 (2%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
G A PA+ A AA A +P A A PA PA A + AAP
Sbjct: 369 GGGAGPATAAAAPVAQPAPAAAAPAAAAPAP--AAPPAAPAAAPAAAAAARAVAAAPARR 426
Query: 287 TTAPKPAPV---RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK-PRPATAA 342
+ AP+ +AAP +A AA +PVAA A P A A
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATA 402
AP P + AS + + + + P + A PA A
Sbjct: 487 AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPA 546
Query: 403 KPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
P + S D
Sbjct: 547 AAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
Score = 61.4 bits (149), Expect = 1e-09
Identities = 49/182 (26%), Positives = 63/182 (34%), Gaps = 12/182 (6%)
Query: 170 EVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPA 229
P A + + A++ A VA A + A A A ++A+A P PA
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451
Query: 230 AKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPK-PATKPAPKPTTAAP--KST 286
PA+ P A A A P A A PA PA PAP P +
Sbjct: 452 PAPAAAPAA--------AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP 503
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA-APAP 345
PAP + A + A P P AAPAP+ AT AP
Sbjct: 504 PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
Query: 346 KP 347
+P
Sbjct: 564 RP 565
Score = 54.1 bits (130), Expect = 2e-07
Identities = 46/231 (19%), Positives = 64/231 (27%), Gaps = 19/231 (8%)
Query: 124 PNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVES 183
P Q P+ A V P + A P + +
Sbjct: 365 PGQSGGGAGPATAAAAP---------VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAA 415
Query: 184 AEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTT 243
A A+ + AL A+ A A P AA+PA+
Sbjct: 416 ARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475
Query: 244 KTTTAAKPAISPVKKTATTTAKP---APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
A+ A + A P P PAP AAP P P
Sbjct: 476 AAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP----DPAT 531
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
+ + A AP+ AA +PV AP P P +A + +G
Sbjct: 532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP---PRASASGLPDMFDG 579
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 65.5 bits (160), Expect = 7e-11
Identities = 50/144 (34%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
AAAA AA A KKT AA PA+ P+A+ AA A + A
Sbjct: 367 AAAAEAAAP-----AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAA 324
PAP A PA AAP A PA V A A A P AP+PA
Sbjct: 422 PPAPVAA--PAAAAPAAAP-----AAAPAAVALAPAPPA--QAAPETVAIPVRVAPEPAV 472
Query: 325 PKKPVAAPAPKPRPATAAPAPKPL 348
AAPAP PA A P
Sbjct: 473 ---ASAAPAPAAAPAAARLTPTEE 493
Score = 64.7 bits (158), Expect = 1e-10
Identities = 38/146 (26%), Positives = 52/146 (35%), Gaps = 21/146 (14%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
A A PA K T A P++ A P A + AA +A A
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQ----------AAAAPAPAAAPAAAASAPAA 416
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
A PAP PA AAPA P A A+ + + + +A + A V
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAP-----------AAAPAAVALAPAPPAQAAPETVAIPVR 465
Query: 386 LSQRTSAAKPATKPATAKPSTTSKPT 411
++ + A A PA A + PT
Sbjct: 466 VAPEPAVASAAPAPAAAPAAARLTPT 491
Score = 61.3 bits (149), Expect = 1e-09
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 12/133 (9%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA-KPAPKPATKPAPKPTTAAPKST 286
PAA + A+ T AA PA +PV + A A AP A P AAP
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP--- 422
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP---APKPRPATAAP 343
PAPV P A+ + +A AP A + VA P AP+P A+AAP
Sbjct: 423 -----PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAP 477
Query: 344 APKPLTNGVTKRP 356
AP P
Sbjct: 478 APAAAPAAARLTP 490
Score = 59.3 bits (144), Expect = 5e-09
Identities = 35/126 (27%), Positives = 47/126 (37%)
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
+ A+ A A P+ +AP A + AAPAP PA AA AP
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
PV+A A+ ++ + A+ A AP + T A P A S P A
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484
Query: 416 PATATR 421
A T
Sbjct: 485 AARLTP 490
Score = 57.4 bits (139), Expect = 2e-08
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 6/131 (4%)
Query: 311 VSAAPKPSAPKPAAPKKPVAA-PAPKPRPATA-APAPKPLTNGVTKRPVSATTTASRTSS 368
+AA + + P +P AA PA P A APAP P + A
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA----P 422
Query: 369 SSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
+ +A AA A + A PA A + A +PA A+ +
Sbjct: 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
Query: 429 PATTTSTDIED 439
PA T E+
Sbjct: 483 PAAARLTPTEE 493
Score = 56.6 bits (137), Expect = 4e-08
Identities = 38/138 (27%), Positives = 47/138 (34%), Gaps = 11/138 (7%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A KPA + PA A PA P A + AP AP A+ + A
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAP--VAQAAAAPAPAAAP-----AAAASAPA 415
Query: 308 TSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTS 367
+A P P A AA A AP AP + V A +
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV----RVAPEPA 471
Query: 368 SSSVTSASAAKPAAPRVP 385
+S A AA PAA R+
Sbjct: 472 VASAAPAPAAAPAAARLT 489
Score = 45.5 bits (108), Expect = 1e-04
Identities = 35/137 (25%), Positives = 46/137 (33%), Gaps = 14/137 (10%)
Query: 156 ETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVK 215
+ AEK+TP EA +A + A++ A A A A AA A A
Sbjct: 370 AEAAAPAEKKTP------ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP 423
Query: 216 KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPA 275
AA P A A +A A P +T + AP+PA A
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVA--------LAPAPPAQAAPETVAIPVRVAPEPAVASA 475
Query: 276 PKPTTAAPKSTTTAPKP 292
AAP + P
Sbjct: 476 APAPAAAPAAARLTPTE 492
Score = 42.8 bits (101), Expect = 7e-04
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 355 RPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTAS 414
+P +A A+ + AA PAA P++Q +A PA PA A + + P A+
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAA--APVAQAAAAPAPAAAPAAAASAPAA-PPAAA 421
Query: 415 KPATATRPATTTSKPA 430
PA PA A
Sbjct: 422 PPAPVAAPAAAAPAAA 437
Score = 38.9 bits (91), Expect = 0.010
Identities = 31/130 (23%), Positives = 38/130 (29%), Gaps = 20/130 (15%)
Query: 327 KPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPL 386
KP AA PA RP +A A+ + ++ A AA PAA
Sbjct: 365 KPAAAAEAAAPAEKKTPA----------RPEAAAPAAAPVAQAAAAPAPAAAPAA----- 409
Query: 387 SQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFT 446
AA P A P A+ PA A A A E
Sbjct: 410 -----AASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464
Query: 447 PEELEAAIKS 456
E A+ S
Sbjct: 465 RVAPEPAVAS 474
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 63.3 bits (154), Expect = 4e-10
Identities = 48/338 (14%), Positives = 79/338 (23%), Gaps = 41/338 (12%)
Query: 116 PTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIP 175
P P E+P+ + S T + P
Sbjct: 63 DRFEPPTGPPPGPGTEAPANE-SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP---PP 118
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK 235
+ G+ AA+ A A A AA P S
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS 178
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
P A S + PA P +A S+ P PAP
Sbjct: 179 P----------EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASS---PAPAPG 225
Query: 296 RKPVASTITKTATSTVS-----------AAPKPSAPKPAAPKKPVAAPAPKPRPATA--- 341
R ++ S+ S P P P + A +
Sbjct: 226 RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPA 285
Query: 342 -------APAPKPLTNGVTKRPVSATTTASRT---SSSSVTSASAAKPAAPRVPLSQRTS 391
+P P + P ++ AS + S S +S++++ + R
Sbjct: 286 SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGP 345
Query: 392 AAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKP 429
+ + P+ P + + S
Sbjct: 346 SPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
Score = 62.9 bits (153), Expect = 5e-10
Identities = 55/287 (19%), Positives = 99/287 (34%), Gaps = 22/287 (7%)
Query: 152 TPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAA--AG 209
+ D P S P + + + V S A+S AA + A V AA
Sbjct: 112 SSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQ 171
Query: 210 AAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTT---KTTTAAKPAISPVKKTATTTAKP 266
AA+ + + PA P S P A + +++ + A SP + A
Sbjct: 172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADD 231
Query: 267 APKPA---TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
A + + P++ P+PAP+ P + I + + ++ A +
Sbjct: 232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLP--TRIWEASGWNGPSSRPGPASSSS 289
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP- 382
+P P P+ ++P P + S+++ S +SS+S +S S+ A
Sbjct: 290 SP------RERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP 343
Query: 383 -----RVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPAT 424
R P R + P + + + A+ TR
Sbjct: 344 GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRA 390
Score = 59.4 bits (144), Expect = 7e-09
Identities = 49/209 (23%), Positives = 73/209 (34%), Gaps = 15/209 (7%)
Query: 199 GALVVGAAAAGAAVAVKKATAAKKTDKP------GPAAKPASKPLAKTTTTKTTTAAKPA 252
G LV +A A V A A + + P PA++ + T + +T A
Sbjct: 41 GQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASP 100
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
T + P P P T P P P + AP + + +PV S A S
Sbjct: 101 AREGSPTPPGPSSPDPPPPTPPPASP---PP---SPAPDLSEMLRPVGSPGPPPAASPP- 153
Query: 313 AAPKPSAPKPAAPKKP--VAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
AA A + A P P AP+ P + P +A+ R SS
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213
Query: 371 VTSASAAKPAAPRVPLSQRTSAAKPATKP 399
SAS+ PA R +++ ++
Sbjct: 214 SASASSPAPAPGRSAADDAGASSSDSSSS 242
Score = 52.9 bits (127), Expect = 6e-07
Identities = 47/336 (13%), Positives = 97/336 (28%), Gaps = 14/336 (4%)
Query: 95 TEKTPEVSEPKEEVLDDLVSVPTSVPDVVPN-QDANEESPSPAVDLTQDIVEEKEAVVTP 153
TP + P DL + V P + + + + D ++A + P
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL-P 175
Query: 154 TDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVA 213
+P +E P A ++ +A +AA A +
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235
Query: 214 VKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK 273
+++++ + P T T + + +
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
P+P P++ ++P+ + + + ++TS+ S + + +A P + +
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSS-SSTSSSSESSRGAAVSPGPS----PSRS 350
Query: 334 PKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAA 393
P P P + S ++ S+ T A A R T
Sbjct: 351 PSPSRPPPPADPSSPR---KRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
Query: 394 KPATKPATAKPSTTSKPTTASKPATATRPATTTSKP 429
PA +P PS + T + +P
Sbjct: 408 -PAGRPR---PSPLDAGAASGAFYARYPLLTPSGEP 439
Score = 49.8 bits (119), Expect = 6e-06
Identities = 45/213 (21%), Positives = 71/213 (33%), Gaps = 9/213 (4%)
Query: 258 KTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP 317
A +P P P + +ST T A + T S P P
Sbjct: 59 AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPP 118
Query: 318 SAPKPAAPKKPVA---APAPKPRPA-TAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTS 373
P PA+P A + +P + PA P G + V++ +SR ++ ++S
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS 178
Query: 374 ASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTT--SKPAT 431
A P S A P P S P +AS + A P + A+
Sbjct: 179 PEETARAPSSPPAEPPPSTPPAAASPR---PPRRSSPISASASSPAPAPGRSAADDAGAS 235
Query: 432 TTSTDIEDEMNQPFTPEELEAAIKSGLITTPGR 464
++ + + + PE + IT P R
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTR 268
Score = 39.0 bits (91), Expect = 0.012
Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 5/151 (3%)
Query: 193 LAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
A+ L GA + A + A T +K + +
Sbjct: 767 KLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTP 826
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
+ + A+P A P + + ++ A A + +
Sbjct: 827 DGGSESSGP--ARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPG 884
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
AA P A A P APAP+PRPA
Sbjct: 885 AAAPPKAAAAAPPA---GAPAPRPRPAPRVK 912
Score = 39.0 bits (91), Expect = 0.013
Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 4/164 (2%)
Query: 190 SSDLAAKVAGALVVGAA----AAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKT 245
S A A A + A + + +A A + +P A + A+ +
Sbjct: 740 SPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRP 799
Query: 246 TTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITK 305
+ + + T + + + + + A A P + +
Sbjct: 800 GRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPA 859
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
A P+P P+ A AP A A PA P
Sbjct: 860 AAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAP 903
Score = 36.7 bits (85), Expect = 0.068
Identities = 30/149 (20%), Positives = 46/149 (30%), Gaps = 4/149 (2%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA-PAPKP 336
P+ K P + + + + P + + P A+ A K
Sbjct: 761 PSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRR-PGRLRRSGPAADAASRTASKR 819
Query: 337 RPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP- 395
+ + P ++G + P +A SS S S AA R +R
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879
Query: 396 -ATKPATAKPSTTSKPTTASKPATATRPA 423
A A A P + A PA RPA
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPA 908
Score = 35.9 bits (83), Expect = 0.092
Identities = 30/166 (18%), Positives = 47/166 (28%), Gaps = 11/166 (6%)
Query: 194 AAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTT---KTTTAAK 250
A + AL + A +A A + G + P + A + + A
Sbjct: 750 AWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAA 809
Query: 251 PAIS---PVKKTATTTAKPAPKPATKPAPKPTTAAP----KSTTTAPKPAPVRKPVASTI 303
A S +K+ + T + + P A P S ++ KPA
Sbjct: 810 DAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKN 869
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
+ +P A P A PA P P L
Sbjct: 870 GRRRPRPPEPRARPGAAAPPKAAAA-APPAGAPAPRPRPAPRVKLG 914
Score = 35.5 bits (82), Expect = 0.16
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 1/141 (0%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
A +PA ++ ++ +P +R+ + + T++ + + +
Sbjct: 771 ALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGS 830
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
P P RP A + + + R A AAP
Sbjct: 831 ESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPG-AAAPP 889
Query: 384 VPLSQRTSAAKPATKPATAKP 404
+ A PA +P A
Sbjct: 890 KAAAAAPPAGAPAPRPRPAPR 910
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 62.7 bits (153), Expect = 5e-10
Identities = 48/219 (21%), Positives = 61/219 (27%), Gaps = 16/219 (7%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P P A P A ++ AA+PA A PA A PA A S
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPA---------APAAPAAPAAPAPAGAAAAPAEAS 640
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP-----AT 340
AP A A+ P + AAP P APAP A
Sbjct: 641 AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG--AAPAAPPPAPAPAAPAAPAGAAP 698
Query: 341 AAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPA 400
A PAP P + + + + + AA P P A
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758
Query: 401 TAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIED 439
P+ A+ P + S D ED
Sbjct: 759 PPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
Score = 53.5 bits (129), Expect = 4e-07
Identities = 59/280 (21%), Positives = 84/280 (30%), Gaps = 44/280 (15%)
Query: 193 LAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
L A++ L+ A+ + + ++ G A PA+ + A A
Sbjct: 358 LCARM---LLPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAA 414
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
+P A PA P PAP P A P AP P A+ + +
Sbjct: 415 AAPA---AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG------------VTKRPVSAT 360
AAP+P+A AP A A PA A V KR S
Sbjct: 472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKR--SRK 529
Query: 361 TTASRTSSSSV-------------TSASAAKPAAPRVPLSQRTSAAK-----------PA 396
T A ++V T A + A+P T+ A+
Sbjct: 530 TWAILLPEATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVG 589
Query: 397 TKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
P A P ++ P A RPA + A
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAP 629
Score = 50.0 bits (120), Expect = 5e-06
Identities = 34/140 (24%), Positives = 40/140 (28%), Gaps = 2/140 (1%)
Query: 312 SAAPKPSAPKPAAPKKPV--AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS 369
S+ P A +PAAP P AAPAP A A A GV A +S
Sbjct: 605 SSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664
Query: 370 SVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKP 429
A A + A PA A P A PA +
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724
Query: 430 ATTTSTDIEDEMNQPFTPEE 449
A S + P E
Sbjct: 725 AQGASAPSPAADDPVPLPPE 744
Score = 48.8 bits (117), Expect = 1e-05
Identities = 31/187 (16%), Positives = 36/187 (19%)
Query: 172 PVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAK 231
P A A AA A A A A A+ A +
Sbjct: 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPE 651
Query: 232 PASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK 291
K +A + A A PA P AP T P
Sbjct: 652 HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
S S A P P P P +P
Sbjct: 712 GQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771
Query: 352 VTKRPVS 358
P
Sbjct: 772 AAPPPSP 778
Score = 48.4 bits (116), Expect = 1e-05
Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 1/130 (0%)
Query: 310 TVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS 369
V+ A + A AP A A A +P A A S
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAP-APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444
Query: 370 SVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKP 429
+ + + P+ P A PA P + P + A PA +
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
Query: 430 ATTTSTDIED 439
+ + +
Sbjct: 505 GADDAATLRE 514
Score = 38.0 bits (89), Expect = 0.020
Identities = 35/183 (19%), Positives = 46/183 (25%), Gaps = 23/183 (12%)
Query: 166 TPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDK 225
P E + A D + G AA AA A A
Sbjct: 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP--APAPAAPAA 692
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P AA A PA AT A A PA +P A+ S
Sbjct: 693 PAGAAPAQP-------------APAPA-------ATPPAGQADDPAAQPPQAAQGASAPS 732
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR-PATAAPA 344
+P A + P P+ A P + P+ + AP+
Sbjct: 733 PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
Query: 345 PKP 347
Sbjct: 793 MDD 795
Score = 36.5 bits (85), Expect = 0.068
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 1/125 (0%)
Query: 329 VAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ 388
+ P+ + L + + A+ S+++ A+A PAA +
Sbjct: 362 MLLPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPA-AA 420
Query: 389 RTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPE 448
A A +PA A + P+ A P+ + + +P
Sbjct: 421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480
Query: 449 ELEAA 453
Sbjct: 481 APAPP 485
Score = 33.4 bits (77), Expect = 0.60
Identities = 35/176 (19%), Positives = 43/176 (24%), Gaps = 2/176 (1%)
Query: 152 TPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAA 211
P + P V + V + S AK GA A A
Sbjct: 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687
Query: 212 VA-VKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
A A AA P PAA P + A + P P
Sbjct: 688 AAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
PA P P AP AP P S ++ AP +
Sbjct: 748 PPDPAGAPAQPPPP-PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 62.2 bits (152), Expect = 1e-09
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 269 KPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP 328
P + AP AA + +AP AP K A+ + AAP A AA P
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 329 VAAPAPKPRPATAAPAPKPLTNGVTK-RPVSATTTASRTSSSSVTSA 374
A PA AAPA + + VT R +A + +S V +A
Sbjct: 97 AAPPAAAA---AAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEVPTA 140
Score = 56.8 bits (138), Expect = 4e-08
Identities = 24/99 (24%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 245 TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT 304
+TAA A + A + AP AP P A + PKPA
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAA---------- 88
Query: 305 KTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
AA +AP AAPA P
Sbjct: 89 --------AAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 56.1 bits (136), Expect = 6e-08
Identities = 19/84 (22%), Positives = 23/84 (27%)
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAA 324
P A A AA + AP P + A + +A A
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 325 PKKPVAAPAPKPRPATAAPAPKPL 348
P AA A P A PL
Sbjct: 97 AAPPAAAAAAAPAAAAVEDEVTPL 120
Score = 53.7 bits (130), Expect = 4e-07
Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 225 KPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPK 284
PG A P + A AA A +P A AP KPA AA
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA--AAAA 94
Query: 285 STTTAPKPAPVRKPVASTITKTAT 308
+ P A P A+ + T
Sbjct: 95 APAAPPAAAAAAAPAAAAVEDEVT 118
Score = 53.4 bits (129), Expect = 4e-07
Identities = 35/131 (26%), Positives = 38/131 (29%), Gaps = 24/131 (18%)
Query: 193 LAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
A G+ AAA AA A A AA K A PA A
Sbjct: 33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---------AAAPAAP 83
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITK------- 305
P A A AP A A A T P+R A+
Sbjct: 84 PKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT------PLRGAAAAVAKNMDASLEV 137
Query: 306 -TATSTVSAAP 315
TATS V A P
Sbjct: 138 PTATS-VRAVP 147
Score = 51.0 bits (123), Expect = 2e-06
Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT 306
+ + A + PA PA K P A P + A P P A+
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA---- 94
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKP-RPATAAPA 344
+ A P+A AAP P R A AA A
Sbjct: 95 -----APAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVA 128
Score = 48.7 bits (117), Expect = 1e-05
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA-APAPKPLTNGVTKRPVSATTT 362
+ +AA SAP A K AAPAP P A A A PKP +A
Sbjct: 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP-----AAAAAAAAAP 96
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
A+ ++++ + +AA PL R +AA A
Sbjct: 97 AAPPAAAAAAAPAAAAVEDEVTPL--RGAAAAVAK 129
Score = 46.8 bits (112), Expect = 5e-05
Identities = 22/115 (19%), Positives = 28/115 (24%), Gaps = 33/115 (28%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
ST + +A AA A A P AP
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA------------------- 78
Query: 367 SSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR 421
A+ KPAA AA A A + + P A+ T
Sbjct: 79 -----APAAPPKPAAA---------AAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 46.4 bits (111), Expect = 6e-05
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVA-APAPKPRPATAAPAPKPLTNGVTKRP 356
A+ A S +AAP AP AP P A APA P+PA AA A
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
Query: 357 VSATTTASRTSSSSVTSASAAKPA 380
+A A+ + +AA A
Sbjct: 105 AAAPAAAAVEDEVTPLRGAAAAVA 128
Score = 46.0 bits (110), Expect = 8e-05
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
S + ++ +A+AA +AP + + AA PA A P+ KP A+ A A
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98
Query: 423 ATTTSKPATTTSTDIEDE 440
+ A + +EDE
Sbjct: 99 PPAAAAAAAPAAAAVEDE 116
Score = 46.0 bits (110), Expect = 8e-05
Identities = 18/99 (18%), Positives = 22/99 (22%), Gaps = 13/99 (13%)
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
A P A A A A + A A P A P
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPA---------APAPAPPAAAAP---- 80
Query: 390 TSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
+ KPA A A A+ A +
Sbjct: 81 AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 46.0 bits (110), Expect = 8e-05
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 358 SATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPA 417
+T A ++++ +A++A AAP + A PA A P + A+ PA
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 418 TATRPATTTSKPATTT 433
A + A
Sbjct: 98 APPAAAAAAAPAAAAV 113
Score = 42.2 bits (100), Expect = 0.001
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 358 SATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPA 417
+A A+ ++S+ +A AAK A P +AA PA P A + + A A
Sbjct: 45 TAAAAAAAAAASAPAAAPAAKAPAAPAP--APPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102
Query: 418 TATRPATTTSKPATTT 433
A + T
Sbjct: 103 AAAAAPAAAAVEDEVT 118
Score = 39.5 bits (93), Expect = 0.009
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
A S+ +AA AA AAK PA A P+ + P KPA A
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA-PAAPPKPAAAAAA 92
Query: 423 ATTTSKPATTTST 435
A + P +
Sbjct: 93 AAAPAAPPAAAAA 105
Score = 36.8 bits (86), Expect = 0.053
Identities = 21/91 (23%), Positives = 31/91 (34%)
Query: 175 PQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPAS 234
A +A + A++ A A A A A A K AA PA+
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98
Query: 235 KPLAKTTTTKTTTAAKPAISPVKKTATTTAK 265
P A A + ++P++ A AK
Sbjct: 99 PPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
Score = 35.3 bits (82), Expect = 0.18
Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 4/87 (4%)
Query: 151 VTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGA 210
T + A S P A A++ AA A AAAA A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA----AAAAAA 93
Query: 211 AVAVKKATAAKKTDKPGPAAKPASKPL 237
A AA A + PL
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEVTPL 120
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 60.3 bits (146), Expect = 1e-09
Identities = 40/135 (29%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 193 LAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
LAA A A A KKA+A K+ + K A+K + K A A
Sbjct: 191 LAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAK--TAVSAKKAAKTAAKA 248
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
KKTA K A K K A K AA K+ A K + K A +
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308
Query: 313 AAPKPSAPKPAAPKK 327
A APK A K
Sbjct: 309 AKATAKAPKRGAKGK 323
Score = 56.4 bits (136), Expect = 2e-08
Identities = 33/141 (23%), Positives = 40/141 (28%), Gaps = 7/141 (4%)
Query: 243 TKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAST 302
K A S KK + A K + K A K +A K+ TA K A K A
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTT 362
K A V A K +A A K A A G S
Sbjct: 259 ALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKA-------GKKAAAGSKAKA 311
Query: 363 ASRTSSSSVTSASAAKPAAPR 383
++ A K R
Sbjct: 312 TAKAPKRGAKGKKAKKVTKKR 332
Score = 56.0 bits (135), Expect = 3e-08
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAP 283
K A K + + A K + KK A TA A K A K A K A
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVS----KKKAAKTAVSA-KKAAKTAAKAAKKAK 253
Query: 284 KSTTTAPK-PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
K+ A K A K A K A A K + K A KK A + A
Sbjct: 254 KTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATA 313
Query: 343 PAPKPLTNGVTKRPVS 358
APK G + V+
Sbjct: 314 KAPKRGAKGKKAKKVT 329
Score = 53.7 bits (129), Expect = 2e-07
Identities = 36/129 (27%), Positives = 42/129 (32%), Gaps = 1/129 (0%)
Query: 207 AAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKP 266
AA A A K A K AK A+K ++K KT +AK A K A K
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
A K A K A K A K A A A+ A + A K
Sbjct: 256 AKK-ALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAK 314
Query: 327 KPVAAPAPK 335
P K
Sbjct: 315 APKRGAKGK 323
Score = 52.2 bits (125), Expect = 5e-07
Identities = 31/133 (23%), Positives = 39/133 (29%)
Query: 175 PQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPAS 234
+ ++ + + +AK A + A AV AAK K AK +
Sbjct: 197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTA 256
Query: 235 KPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAP 294
K K AAK A K A AK A AA S A AP
Sbjct: 257 KKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAP 316
Query: 295 VRKPVASTITKTA 307
R K
Sbjct: 317 KRGAKGKKAKKVT 329
Score = 47.2 bits (112), Expect = 2e-05
Identities = 32/126 (25%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP---RPATAAPAPKPLT 349
P K A + A S K A K A K A A K TA A K
Sbjct: 205 TPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAA 264
Query: 350 NGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSK 409
V K A A++ + +A A K A + + +AA K P +K
Sbjct: 265 KAVKKAAKKAAKAAAKAAKG---AAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAK 321
Query: 410 PTTASK 415
A K
Sbjct: 322 GKKAKK 327
Score = 47.2 bits (112), Expect = 2e-05
Identities = 30/146 (20%), Positives = 41/146 (28%), Gaps = 6/146 (4%)
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
++ V A P + A + + K A A KTA
Sbjct: 191 LAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAK 250
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
A K + K V A K A AA A K + A + +
Sbjct: 251 KAKKTAKKALKKAAKAVKKAAKKAAKA-AAKAAKG-----AAKATKGKAKAKKKAGKKAA 304
Query: 373 SASAAKPAAPRVPLSQRTSAAKPATK 398
+ S AK A + AK TK
Sbjct: 305 AGSKAKATAKAPKRGAKGKKAKKVTK 330
Score = 43.0 bits (101), Expect = 4e-04
Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 3/126 (2%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
V AA + K AA + A K + A K K VSA A + ++
Sbjct: 190 VLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAA 249
Query: 371 VTSASAAKPAAPRVPLSQRTSA---AKPATKPATAKPSTTSKPTTASKPATATRPATTTS 427
+ AK A + + + +A AK A K A T A K A A + +
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKA 309
Query: 428 KPATTT 433
K
Sbjct: 310 KATAKA 315
Score = 40.3 bits (94), Expect = 0.003
Identities = 33/143 (23%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 144 VEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVV 203
K+A TP ++ ++ A + + + + A ++ S+ AAK A
Sbjct: 197 ANAKKAAKTPAAKSGAKKASAKAK------SAAKKVSKKKAAKTAVSAKKAAKTAAKAAK 250
Query: 204 GAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTT 263
A K A A KK K AAK A+K A K T A K A
Sbjct: 251 KAKKTAKKALKKAAKAVKKAAK--KAAKAAAK--AAKGAAKATKGKAKAKKKAGKKAAAG 306
Query: 264 AKPAPKPATKPAPKPTTAAPKST 286
+K A K T
Sbjct: 307 SKAKATAKAPKRGAKGKKAKKVT 329
Score = 40.3 bits (94), Expect = 0.004
Identities = 32/136 (23%), Positives = 42/136 (30%), Gaps = 11/136 (8%)
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
+K + K+ SA K +A K + K A + K TAA A K K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKA 259
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
A + + AAK AA AAK A AK K SK
Sbjct: 260 LKKAAKAVKK------AAKKAAKAAAKAA-----KGAAKATKGKAKAKKKAGKKAAAGSK 308
Query: 416 PATATRPATTTSKPAT 431
+ +K
Sbjct: 309 AKATAKAPKRGAKGKK 324
Score = 34.5 bits (79), Expect = 0.21
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 355 RPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTAS 414
+ + T A + + A +A + ++ +AK A K A AK + +K T
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTA-AKAAKKAKKTAKK 258
Query: 415 KPATATRPATTTSKPATTTS 434
A + +K A +
Sbjct: 259 ALKKAAKAVKKAAKKAAKAA 278
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner. Ribonuclease H (RNase H) enzymes are divided
into two major families, Type 1 and Type 2, based on
amino acid sequence similarities and biochemical
properties. RNase H is an endonuclease that cleaves the
RNA strand of an RNA/DNA hybrid in a sequence
non-specific manner in the presence of divalent cations.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes. Most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site residues and have the same catalytic
mechanism and functions in cells. RNase H is involved in
DNA replication, repair and transcription. One of the
important functions of RNase H is to remove Okazaki
fragments during DNA replication. RNase H inhibitors
have been explored as an anti-HIV drug target because
RNase H inactivation inhibits reverse transcription.
Length = 123
Score = 55.1 bits (133), Expect = 3e-09
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 24/135 (17%)
Query: 679 YTDASKKNE--KVGAAWFCPTYKSKACFKLH-----PATSTYTAEVIGIWEALKYSASLK 731
TD S K GA + + PA + AE++ + EAL+ + L
Sbjct: 1 NTDGSCKGNPGPAGAGGVL--RDHEGAWLFAGSLSIPAATNNEAELLALLEALELALDLG 58
Query: 732 NNEILILTDSKSACQKLSKNCLNTTPTHLELEI----LSSYKHLQNTCKTVKLAWIKGHE 787
+++I TDSK ++ +L L LS + ++ +
Sbjct: 59 LKKLIIETDSKYVVDLINSWSKGWKKNNLLLWDILLLLSKFIDIRFE-------HVPR-- 109
Query: 788 GIKGNVEVDRLAKYA 802
+GN DRLAK A
Sbjct: 110 --EGNEVADRLAKEA 122
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 56.5 bits (136), Expect = 4e-08
Identities = 49/230 (21%), Positives = 67/230 (29%), Gaps = 3/230 (1%)
Query: 173 VIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGP--AA 230
VI +T E E AS+ V AL + A A T P A
Sbjct: 27 VILSNRRTAEGIEIVAASNYDEELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAP 86
Query: 231 KPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAP 290
S + + +AA+ I+ + + P PA P + +P + A
Sbjct: 87 LKLSANANMSQRQRVASAAEDMIAAMALRQPVSV-PRQAPAAAPVRAASIPSPAAQALAH 145
Query: 291 KPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTN 350
A P + A +AP P AP + AP P PA AA
Sbjct: 146 AAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAY 205
Query: 351 GVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPA 400
+ AA P P + AA A PA
Sbjct: 206 AQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPA 255
Score = 48.8 bits (116), Expect = 8e-06
Identities = 46/205 (22%), Positives = 57/205 (27%), Gaps = 21/205 (10%)
Query: 160 ETAEKETPLSEVPVIP-QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKAT 218
ETA +TP + P +A T +A A A+AA +A
Sbjct: 56 ETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALR 115
Query: 219 AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKP 278
+ PAA P A + + A A + A A P A
Sbjct: 116 QPVSVPRQAPAAAPVR---AASIPSPAAQALAHAAAVRTAPRQEHALSA-VPEQLFADFL 171
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSA----------------APKPSAPKP 322
TTA PV + A A A P
Sbjct: 172 TTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPA 231
Query: 323 AAPKKPVAAPAPKPRPATAAPAPKP 347
A P VA AP A AA AP P
Sbjct: 232 ALPPIVVAPAAPAALAAVAAAAPAP 256
Score = 43.1 bits (101), Expect = 5e-04
Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 12/201 (5%)
Query: 254 SPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSA 313
V++ T P A PAP P + S + A++
Sbjct: 49 ELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDM 108
Query: 314 APKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTS 373
+ +P + + A AP + +PA + L + R A + +
Sbjct: 109 IAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFA 168
Query: 374 ASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTT 433
PR P+ A + P A+ A A +
Sbjct: 169 DFLTTAPVPRAPV------------QAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDD 216
Query: 434 STDIEDEMNQPFTPEELEAAI 454
D++D + Q P L +
Sbjct: 217 GFDLDDALPQILPPAALPPIV 237
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 56.8 bits (137), Expect = 4e-08
Identities = 57/266 (21%), Positives = 83/266 (31%), Gaps = 25/266 (9%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK 235
++A E+ EE+ SS + + +V AGA KK A +K K
Sbjct: 1212 KKASESETTEETYGSSAMETENVAEVVKPKGRAGA----KKKAPAAAKEKEEEDEILDLK 1267
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
+ A K T A PA + A + P + + + V
Sbjct: 1268 DRLAAYNLDSAPAQ-----SAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAV 1322
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
+A + K +AA K +A PAA KK PAT K LT
Sbjct: 1323 EVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRG--------PATVQSGQKLLTE----- 1369
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVP-LSQRTSAAKPATKPATAKPSTTSKPTTAS 414
+ A S A P + + R + K S++S+
Sbjct: 1370 -MLKPAEAIGISPEKKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEID 1428
Query: 415 KPATATRPATTTSKPATTTSTDIEDE 440
A RP K T +D E E
Sbjct: 1429 VSA-KPRPQRANRKQTTYVLSDSESE 1453
Score = 51.4 bits (123), Expect = 2e-06
Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 26/265 (9%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
A A A +++A A ++ ++ A K A TTK + ++ +A T
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKP-A 323
A K AP A K + + A + +AP SA
Sbjct: 1233 NVAEVVKPKGRAGAKKKAPA----AAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEET 1288
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTN-----GVTKRPVSATTTASRTSSSSVTSASAAK 378
P A + +P + + V ++ +A
Sbjct: 1289 VKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKP 1348
Query: 379 PAAPRVPLSQR----------------TSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
PAA + P K + S +K + + AT
Sbjct: 1349 PAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGSVLGRAATNK 1408
Query: 423 ATTTSKPATTTSTDIEDEMNQPFTP 447
T +S+ + +S+ +DE++ P
Sbjct: 1409 ETESSENVSGSSSSEKDEIDVSAKP 1433
Score = 42.2 bits (99), Expect = 0.001
Identities = 34/208 (16%), Positives = 55/208 (26%), Gaps = 24/208 (11%)
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAA 324
+ A + + A K + APK P P K + + T T SA + +
Sbjct: 1184 RAAARGESGAAKKVSRQAPK----KPAPKKTTKKASESETTEETYGSSAMETENVAEVVK 1239
Query: 325 PK----KPVAAPAPKP------RPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSA 374
PK APA + + + +A
Sbjct: 1240 PKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAA 1299
Query: 375 SAAKPAAPRVPLSQ---------RTSAAKPATKPATAKPSTTSKPTTASKPATATRPATT 425
A+ V S A+ K KP+ +K A PA A +
Sbjct: 1300 RKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKA-AKPPAAAKKRGPA 1358
Query: 426 TSKPATTTSTDIEDEMNQPFTPEELEAA 453
T + T++ E +
Sbjct: 1359 TVQSGQKLLTEMLKPAEAIGISPEKKVR 1386
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 54.9 bits (132), Expect = 1e-07
Identities = 62/241 (25%), Positives = 77/241 (31%), Gaps = 43/241 (17%)
Query: 201 LVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAK---PAI---- 253
L V + +GA+ + AAKK AA P AK +K A+K P I
Sbjct: 194 LDVKVSGSGASRRAAEQAAAKKALDEVMAAAPML--AAKPKRSKNARASKHVEPEIVPGV 251
Query: 254 ----------SPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKP-VAST 302
SP +K A+ A A PA AAP A +R V +
Sbjct: 252 KGVQEALDLRSPERKERAA-AREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETA 310
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTT 362
K + AA +A KPA A KP A A KP A
Sbjct: 311 ADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKP--------AGQAADP 362
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
AS ++ SA AA R A P + P AS A R
Sbjct: 363 ASSSADKPGASADAAARTPARA--------------RDAAAPDADTPPGGASLAAAQARV 408
Query: 423 A 423
A
Sbjct: 409 A 409
Score = 44.1 bits (104), Expect = 2e-04
Identities = 40/176 (22%), Positives = 60/176 (34%), Gaps = 7/176 (3%)
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT-KTATSTVSAAPKPSAPKPAAP 325
A P PK + A S P+ P K V + ++ AA + + AAP
Sbjct: 222 AAAPMLAAKPKRSKNARASKHVEPEIVPGVKGVQEALDLRSPERKERAAAREARAAAAAP 281
Query: 326 KKPVAAPAPKPRPATAAP-----APKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPA 380
AA AP PA AP A T + A + + AA+ A
Sbjct: 282 AATAAAAAPAEEPA-VAPMAAIRAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKA 340
Query: 381 APRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
A + + +A KPA + A S+ KP ++ A T + +
Sbjct: 341 AEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPARARDAAAPDADTPP 396
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 54.9 bits (133), Expect = 1e-07
Identities = 35/162 (21%), Positives = 54/162 (33%), Gaps = 14/162 (8%)
Query: 246 TTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITK 305
+P + P +A+ P AP A P +AP+ AP
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP------ 416
Query: 306 TATSTVSAAPKP--SAPKPAAPKKPVAAPAPKPRPATAA----PAPKPLTNGVTKRPVSA 359
TS + AA + A KK A A + RP +A + +P + + K P
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476
Query: 360 TTTASRTSS-SSVTSASAAKPAAPRVPLSQRTSAAKPATKPA 400
+ ++ V A P A + L + A K A
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKALEH-EKTPELAAKLA 517
Score = 51.4 bits (124), Expect = 2e-06
Identities = 32/151 (21%), Positives = 41/151 (27%), Gaps = 11/151 (7%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
P P+ + PA + A+ A A P P A P P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQA--PAVPLPET 418
Query: 336 PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP 395
AA G TK S ASR ++A V + P
Sbjct: 419 TSQLLAARQQLQRAQGATKAKKSEPAAASRA-----RPVNSALERLASVRPAPSALEKAP 473
Query: 396 ATKPA---TAKPSTTSKPTTASKPATATRPA 423
A K A A K + P A + A
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATP-KALKKA 503
Score = 49.9 bits (120), Expect = 4e-06
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 3/151 (1%)
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSA 359
A+ + + SAAP SA AAP VA P P A AP+ S
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421
Query: 360 TTTASR--TSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPA 417
A + + T A ++PAA ++ + A+ + +
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRW 481
Query: 418 TATRPATTTSKPATTTSTDIEDEMNQPFTPE 448
AT P +P T ++ + TPE
Sbjct: 482 KATNPVEVKKEPVATPK-ALKKALEHEKTPE 511
Score = 49.1 bits (118), Expect = 7e-06
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 6/151 (3%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
A P P+P P A+ ++T P A + S AP P+
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAP--PQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT---TASRTSSSSVTSASAAKPA 380
+ + + AT A +P RPV++ + R + S++ A A K A
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRA-RPVNSALERLASVRPAPSALEKAPAKKEA 478
Query: 381 APRVPLSQRTSAAKPATKPATAKPSTTSKPT 411
+ +P P K + + T
Sbjct: 479 YRWKATNPVEVKKEPVATPKALKKALEHEKT 509
Score = 48.7 bits (117), Expect = 1e-05
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 8/147 (5%)
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAP---APKPLTNGVTKRPVSATTTASRTSSSSVT 372
P+AP P P +A ATAAP P V P SA A T
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 373 S-ASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPAT 431
S AA+ R + + ++PA + A+P ++ AS + +K
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAA-ASRARPVNSALERLASVRPAPSALEKAPAKKEA 478
Query: 432 ---TTSTDIEDEMNQPFTPEELEAAIK 455
+ +E + TP+ L+ A++
Sbjct: 479 YRWKATNPVEVKKEPVATPKALKKALE 505
Score = 47.9 bits (115), Expect = 2e-05
Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 4/139 (2%)
Query: 211 AVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
+A A + + P +A PA A+ T T A P V + + AP
Sbjct: 356 MLAFHPAAPLPEPEVPPQSAAPA--ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV 413
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRK--PVASTITKTATSTVSAAPKPSAPKPAAPKKP 328
AA + A +K P A++ + S + A K P
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 329 VAAPAPKPRPATAAPAPKP 347
A + + K
Sbjct: 474 AKKEAYRWKATNPVEVKKE 492
Score = 46.4 bits (111), Expect = 6e-05
Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 17/174 (9%)
Query: 283 PKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
P + P+ P A++ TA T + AP PA P+ A A
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAP-------PQAPAVPPPPASAPQQAPAV 413
Query: 343 PAPKPLTNGVTKRP-VSATTTASRTSSSSVTSASAAKPAA----PRVPLSQRTSAAKPAT 397
P P+ + + R + A++ S +AS A+P + SA + A
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 398 KPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELE 451
A + P K P T + E+ E +E
Sbjct: 474 AKKEAYRWKATNPVEVKKE-----PVATPKALKKALEHEKTPELAAKLAAEAIE 522
Score = 45.6 bits (109), Expect = 1e-04
Identities = 28/158 (17%), Positives = 40/158 (25%), Gaps = 5/158 (3%)
Query: 178 AQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPL 237
A E +++ A+ A A A A A AV A+ P + L
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQL 422
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
+ A + A+P + A + A K A K
Sbjct: 423 LAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWK 482
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
T P A K A + A K
Sbjct: 483 A-----TNPVEVKKEPVATPKALKKALEHEKTPELAAK 515
Score = 39.1 bits (92), Expect = 0.009
Identities = 30/145 (20%), Positives = 42/145 (28%), Gaps = 4/145 (2%)
Query: 162 AEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAK 221
+ + T V P +A V S A + AA + AT AK
Sbjct: 380 SAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439
Query: 222 KTDKPGPA-AKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTT 280
K++ + A+P + L + + A K K K P T
Sbjct: 440 KSEPAAASRARPVNSALERLASV--RPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP 497
Query: 281 AAPKSTTTAPK-PAPVRKPVASTIT 304
A K K P K A I
Sbjct: 498 KALKKALEHEKTPELAAKLAAEAIE 522
Score = 36.8 bits (86), Expect = 0.052
Identities = 23/152 (15%), Positives = 29/152 (19%), Gaps = 3/152 (1%)
Query: 196 KVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISP 255
+ A A +ATAA P A P A S
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421
Query: 256 VKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
+ A + ATK K AA V + +
Sbjct: 422 L--LAARQQLQRAQGATKA-KKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA 478
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
K PK P
Sbjct: 479 YRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
Score = 34.5 bits (80), Expect = 0.29
Identities = 27/163 (16%), Positives = 49/163 (30%), Gaps = 14/163 (8%)
Query: 113 VSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEV- 171
+ P P + + + +P + + S++
Sbjct: 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA-PQQAPAVPLPETTSQLL 423
Query: 172 ---PVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGP 228
+ + ++ + A++ A V AL A+ A A++KA A K
Sbjct: 424 AARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA----KKEAY 479
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
K + K T A K A+ K T + A K A
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEK-----TPELAAKLA 517
Score = 30.2 bits (69), Expect = 5.2
Identities = 26/157 (16%), Positives = 39/157 (24%), Gaps = 6/157 (3%)
Query: 126 QDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAE 185
E P + A T A P S P +++
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421
Query: 186 ESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAK------ 239
A L + A A+ A +A ++ PA K AK
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRW 481
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAP 276
T +P +P + P+ A K A
Sbjct: 482 KATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 54.6 bits (131), Expect = 2e-07
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 19/126 (15%)
Query: 219 AAKKTDKPGPAAKPASK-PLAKT------TTTKTTTAAKPAI-SPVKKTATTTAKPAPKP 270
D P A+PA + + ++ ++ A A+ S ++K A K +
Sbjct: 922 QKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRS 981
Query: 271 ATKPAPKPTTAAPKSTTTAP-KPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
K A K AP K A +K A AA K K A KK
Sbjct: 982 VKKAAATRAAMKKKVAKKAPAKKAAAKKAAAK----------KAAAKKKVAKKAPAKKVA 1031
Query: 330 AAPAPK 335
PA K
Sbjct: 1032 RKPAAK 1037
Score = 51.5 bits (123), Expect = 2e-06
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 132 SPSPAVDLTQDIVEEKEAVVTPTDETNSET-AEKETPLSEVPVIPQEAQTVESAEESTAS 190
S S A +D +E + D +E +E + E A + + + +TA
Sbjct: 904 SGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAV 963
Query: 191 SDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAK-PASKPLAKTTTTKTTTAA 249
+ KVA A+ + A +A KK K PA K A K AK K A
Sbjct: 964 ASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAK 1023
Query: 250 KPAISPVKKTATTTAKPAPKPATKPAPK 277
K V + K A KPA K A +
Sbjct: 1024 KAPAKKVARKPAAK-KAAKKPARKAAGR 1050
Score = 43.8 bits (103), Expect = 4e-04
Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 9/147 (6%)
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
+ + T + P + A+PA + + + AA A VA
Sbjct: 910 SARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATA-----VA 964
Query: 301 STITKTATSTVSAAPKP---SAPKPAAPKKPVAAPAP-KPRPATAAPAPKPLTNGVTKRP 356
S I K A + + +A AA KK VA AP K A A A K +
Sbjct: 965 SGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKK 1024
Query: 357 VSATTTASRTSSSSVTSASAAKPAAPR 383
A A + ++ A K A +
Sbjct: 1025 APAKKVARKPAAKKAAKKPARKAAGRK 1051
Score = 41.5 bits (97), Expect = 0.002
Identities = 33/151 (21%), Positives = 47/151 (31%), Gaps = 25/151 (16%)
Query: 281 AAPKSTTTAPKPAP-VRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPA 339
P A + P V + K A + VS A + +A A+ + VA K
Sbjct: 922 QKPTQDGPAAEAQPAQENTVVESAEK-AVAAVSEAAQQAATAVASGIEKVAEAVRKTVRR 980
Query: 340 TAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKP 399
+ A K V + AK AA + +++ +A K K
Sbjct: 981 SVKKAAATRAAMKKK----------------VAKKAPAKKAAAKKAAAKKAAAKKKVAKK 1024
Query: 400 ATAKPSTTSKPTTASKPATATRPATTTSKPA 430
A AK A KPA K A
Sbjct: 1025 APAK-------KVARKPAAKKAAKKPARKAA 1048
Score = 41.1 bits (96), Expect = 0.003
Identities = 28/123 (22%), Positives = 38/123 (30%), Gaps = 6/123 (4%)
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
K T A+PA T + A K + AA + K A +
Sbjct: 922 QKPTQDGPAAEAQPAQE------NTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVR 975
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPV 357
K A +T +A K A K A K A K A A K V ++P
Sbjct: 976 KTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPA 1035
Query: 358 SAT 360
+
Sbjct: 1036 AKK 1038
>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and
more complex than their prokaryotic counterparts and
unlike prokaryote, RNase H are essential in higher
eukaryote. Ribonuclease H (RNase H) is classified into
two families, type 1 (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type 2 (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2). RNase H is
an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner. RNase
H is involved in DNA replication, repair and
transcription. One of the important functions of RNase H
is to remove Okazaki fragments during DNA replication.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. Eukaryotic RNase H is
longer and more complex than in prokaryotes. Almost all
eukaryotic RNase HI have highly conserved regions at the
N-terminal called hybrid binding domain (HBD). It is
speculated that the HBD contributes to binding the
RNA/DNA hybrid. Prokaryotes and some single-cell
eukaryotes do not require RNase H for viability, but
RNase H is essential in higher eukaryotes. RNase H
knockout mice lack mitochondrial DNA replication and die
as embryos.
Length = 150
Score = 50.3 bits (121), Expect = 3e-07
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 678 IYTD-ASKKNEKVGAA-----WFCPTYKSKACFKL--HPATSTYTAEVIGIWEALKYSAS 729
+YTD A + N + GA +F P + +L P T+ AE+ + AL+
Sbjct: 2 VYTDGACRGNGRSGARAGYGVYFGPGHPRNVSERLPGPPQTNQR-AELRAVIHALRLIKE 60
Query: 730 LKNN--EILILTDSKSACQKLS-----------KNCLNTTPTHLEL--EILSSYKHLQNT 774
+ +++I TDS+ ++ K + +L E+ + L+
Sbjct: 61 VGEGLTKLVIATDSEYVVNGVTEWIPKWKKNGWKTSKGKPVANKDLIKELDKLLEELEER 120
Query: 775 CKTVKLAWIKGHEGIKGNVEVDRLAKYA 802
VK + GH GI GN E DRLAK
Sbjct: 121 GIRVKFWHVPGHSGIYGNEEADRLAKKG 148
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 53.3 bits (128), Expect = 4e-07
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPK-STTTAPKPA-----PVRKPVASTITKTATSTVSA 313
A PAP+PA A P+ P + +T PK A P ++PV T T
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV 417
Query: 314 APKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
AP +APK AA +P PAP
Sbjct: 418 APPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451
Score = 47.9 bits (114), Expect = 2e-05
Identities = 30/109 (27%), Positives = 36/109 (33%), Gaps = 20/109 (18%)
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
P P P A P TA P+PVR T S PK +A PK+PV A
Sbjct: 362 PVPAPQPAKP----TAAAPSPVR----------PTPAPSTRPKAAAAANIPPKEPVRETA 407
Query: 334 PKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
P P P P+ + T R + PA P
Sbjct: 408 TPP-PVPPRPVAPPVP---HTPESAPKLT--RAAIPVDEKPKYTPPAPP 450
Score = 45.6 bits (108), Expect = 9e-05
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 232 PASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK 291
P P T + +P +P T A A P +P + T P
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPS--TRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA 331
P P A +T+ A V PK + P P ++
Sbjct: 420 PVPHTPESAPKLTRAA-IPVDEKPKYTPPAPPKEEEKALI 458
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK 346
TT+ P+ V + + A P +AP P P PAP RP AA A
Sbjct: 343 TTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPT-----PAPSTRPKAAAAANI 397
Query: 347 PLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR--VPLSQRTSAAKPATKPA 400
P V + + R + V + P R +P+ ++ PA
Sbjct: 398 PPKEPVRETA-TPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 40.9 bits (96), Expect = 0.003
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
PV A A T+++ S PA P ++ +AA P T + P +
Sbjct: 362 PVPAPQPAKPTAAA--PSPVRPTPA----PSTRPKAAAAANIPPKEPVRETATPPPVPPR 415
Query: 416 PATATRPATTTSKPATTTS---TDIEDEMNQPFTPEELEAA 453
P P T S P T + D + + P P+E E A
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456
Score = 39.4 bits (92), Expect = 0.008
Identities = 34/153 (22%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 314 APKPSAPKPAAPKKPVAAPAPKPRPAT-AAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
P A + + P P P+PA A AP P RP A +T + ++++
Sbjct: 344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSP------VRPTPAPSTRPKAAAAANI 397
Query: 373 SASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATT 432
+ +P P P + K T A+ P T + P
Sbjct: 398 PPKEPVRE----TATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453
Query: 433 TSTDIEDEMNQPFTPEELEAAIKSGLITTPGRD 465
I D E+LEA K L P R
Sbjct: 454 EKALIADGDVL----EQLEAIWKQILRDVPPRS 482
Score = 38.3 bits (89), Expect = 0.016
Identities = 24/110 (21%), Positives = 33/110 (30%), Gaps = 8/110 (7%)
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAIS------PVKKTATTTAK 265
+AV +A P PA A+ P T +T K A + + T
Sbjct: 353 LAVIEALLVPVP-APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP 411
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
P+P P P +APK T A P + A
Sbjct: 412 VPPRPVAPPVPHTPESAPKLTRAA-IPVDEKPKYTPPAPPKEEEKALIAD 460
Score = 34.0 bits (78), Expect = 0.33
Identities = 17/96 (17%), Positives = 23/96 (23%), Gaps = 4/96 (4%)
Query: 193 LAAKVAGALVVGAAAAGAAVAVKKATAAKKT---DKPGPAAKPASKPLAKTTTTKTTTAA 249
L A AAA + V A + + P +P + A
Sbjct: 360 LVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 250 -KPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPK 284
P T A P + P P K
Sbjct: 420 PVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEK 455
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 53.0 bits (128), Expect = 4e-07
Identities = 28/141 (19%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 303 ITKTATSTVSA-APKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
I A S ++A AP +A AA P AAPA RPA A P P +
Sbjct: 40 IVALADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAP--------WLVEHA 91
Query: 362 TASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR 421
+ + +AA A + A + + P A
Sbjct: 92 KRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAA 151
Query: 422 PATTTSKP-ATTTSTDIEDEM 441
A + + E+
Sbjct: 152 VADAVKARIERIVNDTVMQEL 172
Score = 42.3 bits (100), Expect = 0.001
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR---PATAAPAPKPLTNGVTKR 355
+A+ A + +A P P+A A + A P P A A +
Sbjct: 48 LAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107
Query: 356 PVSATTTASRTSSS------SVTSASAAKPAAPRVPLSQRTSAA 393
P + A + + + A AAPR + +AA
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAA 151
Score = 41.9 bits (99), Expect = 0.001
Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 7/117 (5%)
Query: 252 AISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTV 311
A++P A A +P AP + P + P P V T +
Sbjct: 50 ALAP----PAAAAPAAAQPPPAAAP-AAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVAR 104
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
+AAP + A AA R A A P +A + +
Sbjct: 105 AAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPR--VPADAAAAVADAVKAR 159
Score = 41.5 bits (98), Expect = 0.002
Identities = 33/125 (26%), Positives = 41/125 (32%), Gaps = 11/125 (8%)
Query: 189 ASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPG-PAAKPASKPLAKTTTTKTTT 247
A SDLAA L AAAA AA A A +P PAA+PA +
Sbjct: 44 ADSDLAA-----LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKR----- 93
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
V + A A A PA A + A AP + A A
Sbjct: 94 LTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVA 153
Query: 308 TSTVS 312
+ +
Sbjct: 154 DAVKA 158
Score = 38.8 bits (91), Expect = 0.010
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 1/97 (1%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA-STITK 305
AA + A A + A P P TA + V + A +
Sbjct: 54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
A + + + AAP P+ AA
Sbjct: 114 QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA 150
Score = 37.3 bits (87), Expect = 0.032
Identities = 23/106 (21%), Positives = 29/106 (27%), Gaps = 5/106 (4%)
Query: 245 TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT-----TAPKPAPVRKPV 299
AA A P A PA +PAP A + T A AP
Sbjct: 54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
+ + A + A AA +P A A A
Sbjct: 114 QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 52.5 bits (126), Expect = 6e-07
Identities = 29/136 (21%), Positives = 40/136 (29%), Gaps = 17/136 (12%)
Query: 223 TDKPGP-----AAKPASKP------LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
KPGP A++PA K + A+ VK+ T
Sbjct: 176 VVKPGPQIGRYASEPAGGLTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQ 235
Query: 272 TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA 331
AP P + A + + + K T +A + A
Sbjct: 236 GDAAPVPPSEAARPKSADAETNAALK------TPATAPKAAAKNAKAPEAQPVSGTAAAE 289
Query: 332 PAPKPRPATAAPAPKP 347
PAPK AA A KP
Sbjct: 290 PAPKEAAKAAAAAAKP 305
Score = 52.1 bits (125), Expect = 6e-07
Identities = 32/162 (19%), Positives = 45/162 (27%), Gaps = 22/162 (13%)
Query: 270 PATKPAPK--PTTAAPKS-----TTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKP 322
P KP P+ + P T A K + + P
Sbjct: 175 PVVKPGPQIGRYASEPAGGLTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPW 234
Query: 323 AAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
PV P+ RP +A P +A A + V+ +AA+PA
Sbjct: 235 QGDAAPVP-PSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPK 293
Query: 383 RVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPAT 424
A AKP+ KP +P RP
Sbjct: 294 E----------AAKAAAAAAKPALEDKP----RPLGIARPGG 321
Score = 51.0 bits (122), Expect = 2e-06
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 2/135 (1%)
Query: 203 VGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATT 262
+ AG ++ + + + A+ + + T+ A +
Sbjct: 186 YASEPAGGLTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSE 245
Query: 263 TAKPAPKPA-TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPK 321
A+P A T A K APK+ AP +PV+ T +A +A K
Sbjct: 246 AARPKSADAETNAALKTPATAPKAAA-KNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAK 304
Query: 322 PAAPKKPVAAPAPKP 336
PA KP +P
Sbjct: 305 PALEDKPRPLGIARP 319
Score = 43.3 bits (102), Expect = 4e-04
Identities = 33/165 (20%), Positives = 47/165 (28%), Gaps = 9/165 (5%)
Query: 138 DLTQDIVEE--------KEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTA 189
DLT + +EE K VV P + +E L+ + +A+ S +
Sbjct: 156 DLTPERLEEIIDAFAAGKGPVVKPGPQIGRYASEPAGGLTSLTEEAGKARYNASKALAED 215
Query: 190 SSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAA 249
D ++ G V A A + A + A K A A
Sbjct: 216 IGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAK 275
Query: 250 KPAISPVKKTATTTAKPAPKPATK-PAPKPTTAAPKSTTTAPKPA 293
P PV TA P A KP +P
Sbjct: 276 APEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPG 320
Score = 39.8 bits (93), Expect = 0.005
Identities = 32/153 (20%), Positives = 46/153 (30%), Gaps = 22/153 (14%)
Query: 323 AAPKKPVAAPAPKPRPATAAPA----------PKPLTNGVTKRPVSATTTASRTSSSSVT 372
AA K PV P P+ + PA K N T R + V
Sbjct: 170 AAGKGPVVKPGPQIGRYASEPAGGLTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVP 229
Query: 373 SA----SAAKPAAPRVPLSQRTSAAK-------PATKP-ATAKPSTTSKPTTASKPATAT 420
A P P +++ A+ PAT P A AK + + S A A
Sbjct: 230 LLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAE 289
Query: 421 RPATTTSKPATTTSTDIEDEMNQPFTPEELEAA 453
+K A + ++ +P A
Sbjct: 290 PAPKEAAKAAAAAAKPALEDKPRPLGIARPGGA 322
Score = 30.5 bits (69), Expect = 3.6
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 3/124 (2%)
Query: 130 EESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTA 189
EE+ + ++ + E+ V D T + PV P EA +SA+ T
Sbjct: 199 EEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAA-PVPPSEAARPKSADAETN 257
Query: 190 SSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAK-PASKPLAKTTTTKTTTA 248
++ A A A A V AA+ K A A+KP A +
Sbjct: 258 AALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKP-ALEDKPRPLGI 316
Query: 249 AKPA 252
A+P
Sbjct: 317 ARPG 320
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 52.8 bits (126), Expect = 7e-07
Identities = 55/255 (21%), Positives = 76/255 (29%), Gaps = 26/255 (10%)
Query: 208 AGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKP- 266
GA + A P A P P A + AA P P
Sbjct: 679 TGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPA 738
Query: 267 -APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
AP A PA P A P + P P A T P P AP PA
Sbjct: 739 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ----------PPPQAP-PAPQ 787
Query: 326 KKPVAAPAPKPRPAT----------AAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSAS 375
++P AP P+P P AAP + T + ++ ++ R S +
Sbjct: 788 QRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALE 847
Query: 376 AAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
A P P ++ K P P P + + R A ++ T
Sbjct: 848 RQAAAGPT-PSPGSGTSDKIVQAPVFYPPVLQ--PIQVMRQLGSVRAAAASTVTQAPTEY 904
Query: 436 DIEDEMNQPFTPEEL 450
E P P ++
Sbjct: 905 TGERRGVGPMHPTDI 919
Score = 50.5 bits (120), Expect = 3e-06
Identities = 47/217 (21%), Positives = 65/217 (29%), Gaps = 20/217 (9%)
Query: 218 TAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP--------- 268
T+ + P A P P T TT + + + +P P
Sbjct: 582 TSQLASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPI 641
Query: 269 --------KPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAP 320
P P + T P T P A+T+ + + P P AP
Sbjct: 642 TFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAP 701
Query: 321 KPAAPKKPVAAPAPKPRPATA-APAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKP 379
P P P A P RPA A A P RP +A +R +++ A
Sbjct: 702 TPMRP--PAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 759
Query: 380 AAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
A R A P A P+ +P A P
Sbjct: 760 APGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP 796
Score = 38.5 bits (89), Expect = 0.015
Identities = 42/182 (23%), Positives = 56/182 (30%), Gaps = 17/182 (9%)
Query: 225 KPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPA----PKPATKPAPKPTT 280
+P P +P+ T P + T T P P P
Sbjct: 629 RPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQ 688
Query: 281 AAPKSTTTAPK-PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPA 339
AP + P+ P P+R P A A +A A P P AAP PA
Sbjct: 689 WAPGTMQPPPRAPTPMRPP--------AAPPGRAQRPAAATGRARP--PAAAPGRARPPA 738
Query: 340 TA-APAPKPL-TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
A A P G + P +A A +++ P AP P + A P
Sbjct: 739 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQP 798
Query: 398 KP 399
P
Sbjct: 799 PP 800
>gnl|CDD|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term
repeat retroelements. Ribonuclease H (RNase H) enzymes
are divided into two major families, Type 1 and Type 2,
based on amino acid sequence similarities and
biochemical properties. RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner in the presence of divalent
cations. RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote. RNase HI has
also been observed as adjunct domains to the reverse
transcriptase gene in retroviruses, in long-term repeat
(LTR)-bearing retrotransposons and non-LTR
retrotransposons. RNase HI in LTR retrotransposons
perform degradation of the original RNA template,
generation of a polypurine tract (the primer for
plus-strand DNA synthesis), and final removal of RNA
primers from newly synthesized minus and plus strands.
The catalytic residues for RNase H enzymatic activity,
three aspartatic acids and one glutamatic acid residue
(DEDD), are unvaried across all RNase H domains.
Phylogenetic patterns of RNase HI of LTR retroelements
is classified into five major families, Ty3/Gypsy,
Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate
retroviruses. Bel/Pao family has been described only in
metazoan genomes. RNase H inhibitors have been explored
as an anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 135
Score = 48.8 bits (117), Expect = 7e-07
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 18/138 (13%)
Query: 678 IYTDASKKNEKVGAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSASLKNNEILI 737
++TD S K G A + L TS AE+I + AL+ + N I
Sbjct: 2 VFTDGSSFVRKAGYAVVTGPDVLEI-ATLPYGTSAQRAELIALIRALELAKGKPVN---I 57
Query: 738 LTDSK---SACQKL-----SKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEG- 788
TDS L + L P L IL K +Q K V + I+ H G
Sbjct: 58 YTDSAYAFGILHALETIWKERGFLTGKPIALASLILQLQKAIQRP-KPVAVIHIRAHSGL 116
Query: 789 ----IKGNVEVDRLAKYA 802
GN D+ A+ A
Sbjct: 117 PGPLALGNARADQAARQA 134
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 51.9 bits (123), Expect = 7e-07
Identities = 56/176 (31%), Positives = 64/176 (36%), Gaps = 5/176 (2%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK 235
QE + E E D AA A A A A K A AA AK A+
Sbjct: 176 QELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAP 235
Query: 236 PL-AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAP---- 290
P A K A A +P K A AK A PA AP AAP + AP
Sbjct: 236 PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 295
Query: 291 KPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK 346
AP + A A + +A P +A PA P A A P A AAP K
Sbjct: 296 AAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGK 351
Score = 46.1 bits (108), Expect = 5e-05
Identities = 39/153 (25%), Positives = 52/153 (33%)
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
A A + A AAP +A AP + A + +AAP +A PA
Sbjct: 195 AAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAA 254
Query: 327 KPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPL 386
P A A P A A PA P + ++++ A+AA A P
Sbjct: 255 APPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPA 314
Query: 387 SQRTSAAKPATKPATAKPSTTSKPTTASKPATA 419
AK A PA A +K A A
Sbjct: 315 KAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
Score = 44.2 bits (103), Expect = 2e-04
Identities = 46/181 (25%), Positives = 62/181 (34%), Gaps = 5/181 (2%)
Query: 146 EKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGA 205
EK+ ++ + A K+ ++ P ++ ++A + A++ A A A
Sbjct: 182 EKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAA 241
Query: 206 AAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAK 265
A A AA A KA A PA A A K A +P K A AK
Sbjct: 242 APAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAK 301
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
A PA A AAP + AP P K A AA P K
Sbjct: 302 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPP-----AKAAAPPAKAAAAPVGKKAGGK 356
Query: 326 K 326
K
Sbjct: 357 K 357
Score = 43.4 bits (101), Expect = 3e-04
Identities = 53/182 (29%), Positives = 64/182 (35%), Gaps = 22/182 (12%)
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA----TKPAPKPTTAAPKSTTTAPKPA 293
A K AAK A +P K + A PA A P AAP AP A
Sbjct: 194 AAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKA 253
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVT 353
A+ A + + A P A A P K A PA A AAPA
Sbjct: 254 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA----KAAAAPAK-------- 301
Query: 354 KRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTA 413
+A A ++ + +A AK AAP P T AK A PA A + K
Sbjct: 302 ----AAAAPAKAAAAPAKAAAPPAKAAAP--PAKAATPPAKAAAPPAKAAAAPVGKKAGG 355
Query: 414 SK 415
K
Sbjct: 356 KK 357
Score = 39.9 bits (92), Expect = 0.004
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 5/133 (3%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
A + +A K +A K AAP +A A P A AAPA + A
Sbjct: 193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAK 252
Query: 367 SSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPAT-----AKPSTTSKPTTASKPATATR 421
+++ A+A A P AK A PA AK + A+ A
Sbjct: 253 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAA 312
Query: 422 PATTTSKPATTTS 434
PA + PA +
Sbjct: 313 PAKAAAPPAKAAA 325
Score = 39.2 bits (90), Expect = 0.008
Identities = 38/150 (25%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 285 STTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
+ A + A +K A + K+A + AAP +A PA P A A P A AAPA
Sbjct: 195 AAAAAKQKAAAKKAAAPSGKKSAKA---AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPA 251
Query: 345 PKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKP 404
P + +++ A+A A P + AK A P AK
Sbjct: 252 KAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAP--AKA 309
Query: 405 STTSKPTTASKPATATRPATTTSKPATTTS 434
+ A A PA + PA +
Sbjct: 310 AAAPAKAAAPPAKAAAPPAKAATPPAKAAA 339
Score = 38.0 bits (87), Expect = 0.016
Identities = 42/156 (26%), Positives = 53/156 (33%), Gaps = 5/156 (3%)
Query: 145 EEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVG 204
++K A + ++A+ P + A A + A + A A A
Sbjct: 200 KQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAK 259
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
AAA A A A AA K A+ P AK AA PA K A A
Sbjct: 260 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPA-----KAAAAPA 314
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
K A PA AP A P + AP PV
Sbjct: 315 KAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVG 350
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 51.5 bits (123), Expect = 1e-06
Identities = 44/217 (20%), Positives = 73/217 (33%), Gaps = 10/217 (4%)
Query: 220 AKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP-------KPAT 272
+++ A KP+ T + P + A +P KP T
Sbjct: 325 SQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPT 384
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP 332
P P P +++P S+ + A +P +A++ P K P P A
Sbjct: 385 SPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARY 444
Query: 333 APKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSA 392
P + +P + S +++ T A+A PA R PLS
Sbjct: 445 EDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMR-PLSPYAVY 503
Query: 393 A--KPATKPATAKPSTTSKPTTASKPATATRPATTTS 427
KP T P+ A P P++ ++ A T+
Sbjct: 504 DDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTA 540
Score = 39.9 bits (93), Expect = 0.006
Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 6/194 (3%)
Query: 225 KPGPAAKPASKPLAKTTTTKTTTAAKPA-ISPVKKTATTTAKPAPKPATKPAPKPTTAAP 283
KP + P + ++ AKPA V + + P +PA A K +P
Sbjct: 381 KPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP 440
Query: 284 KSTTTAPKPAPVRKPVASTITKTATSTVSAAPK-PSAPKPAAPKKPVAAPAPKPRPATAA 342
+ KP P A T + S+ S+ P P A A P RP +
Sbjct: 441 YARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPY 500
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP----LSQRTSAAKPATK 398
L + P + + +S++ V + P + P T
Sbjct: 501 AVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTM 560
Query: 399 PATAKPSTTSKPTT 412
KP T+ P+
Sbjct: 561 YEDLKPPTSPTPSP 574
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 51.6 bits (124), Expect = 2e-06
Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 7/185 (3%)
Query: 98 TPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDET 157
P+ + +E+ + V V V +V +P V+ ++VEE VV
Sbjct: 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEE-PVVVAEPQPE 907
Query: 158 NSETAEKETPLSEVPVIPQEAQTVESAEESTASSD------LAAKVAGALVVGAAAAGAA 211
E P + ++ Q + ++ + A + + AA A
Sbjct: 908 EVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAE 967
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
V V + + P A A + A P + AT AP P
Sbjct: 968 VVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPE 1027
Query: 272 TKPAP 276
P
Sbjct: 1028 YVPEA 1032
Score = 51.2 bits (123), Expect = 2e-06
Identities = 38/207 (18%), Positives = 58/207 (28%), Gaps = 18/207 (8%)
Query: 118 SVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQE 177
P V P EE Q +V E ++ E + E PV+ E
Sbjct: 844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAE 903
Query: 178 AQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPL 237
Q E T ++ A + AVA + A A+P +P
Sbjct: 904 PQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVA----------EHAEPVVEPQ 953
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
+T + + + A P T P PA V +
Sbjct: 954 DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP-----EVAPAQVPE 1008
Query: 298 PVASTITKTATSTVSAAPKPS-APKPA 323
AT+ ++ AP P P+
Sbjct: 1009 ATVE--HNHATAPMTRAPAPEYVPEAP 1033
Score = 48.1 bits (115), Expect = 2e-05
Identities = 45/250 (18%), Positives = 67/250 (26%), Gaps = 43/250 (17%)
Query: 172 PVI-PQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAA 230
PV+ PQ+ Q E E +V A A V A + A
Sbjct: 846 PVVRPQDVQVEEQREAEEV-------QVQPVVAEVPVAAAVEPVVSAPVVE------AVA 892
Query: 231 KPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP-KPATKPAPKPTTAAPKSTTTA 289
+ +P+ P A T +P + + +
Sbjct: 893 EVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEP 952
Query: 290 PKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVA-APAPKPRPATAAPAPKPL 348
A+ + + +P+AP A V A +P A A +
Sbjct: 953 Q-DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATV 1011
Query: 349 TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRT-------------SAAKP 395
+ P+ T A A P APR QR SA
Sbjct: 1012 EHNHATAPM---TRA---------PAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHSATHH 1059
Query: 396 ATKPATAKPS 405
A+ PAT +P
Sbjct: 1060 ASAPAT-RPQ 1068
Score = 47.0 bits (112), Expect = 5e-05
Identities = 28/176 (15%), Positives = 41/176 (23%), Gaps = 9/176 (5%)
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
+ + + A + +P A APV + VA V
Sbjct: 847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAA--AVEPVVSAPVVEAVAEV---VEEPVVV 901
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
A P+P P AP T P ++ + V+
Sbjct: 902 AEPQPEEVVVVETTHPEVIAAP----VTEQPQVITESDVAVAQEVAEHAEPVVEPQDETA 957
Query: 373 SASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
A A V A A A + + A A P T
Sbjct: 958 DIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEH 1013
Score = 46.6 bits (111), Expect = 6e-05
Identities = 35/199 (17%), Positives = 56/199 (28%), Gaps = 14/199 (7%)
Query: 95 TEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPT 154
P V E V + +V +VV + + E + V E+ V+T +
Sbjct: 882 VVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVT-------EQPQVITES 934
Query: 155 DET-NSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVA 213
D E AE P+ E + + E + +V A AA
Sbjct: 935 DVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVA---EPEVVAQPAAPVVAEVAAEV 991
Query: 214 VKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK 273
+ A T T A P P + +P K
Sbjct: 992 ETVTAVEPEVAPAQVPEATVEHNHA---TAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGK 1048
Query: 274 PAPKPTTAAPKSTTTAPKP 292
A +A ++ A +P
Sbjct: 1049 GAAGGHSATHHASAPATRP 1067
Score = 44.3 bits (105), Expect = 3e-04
Identities = 30/197 (15%), Positives = 46/197 (23%), Gaps = 13/197 (6%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
P+ + + + V+ A AP +P
Sbjct: 844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAP----VVEAVAEVVEEPV 899
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVT 353
V +P + T+ +AP P V + A +P+
Sbjct: 900 VVAEPQPEEVVVVETTHPEVI---AAPVTEQP--QVITESDVAVAQEVAEHAEPVVE-PQ 953
Query: 354 KRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTA 413
A A+PAAP V P+ + T
Sbjct: 954 DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVA-AEVETVTAVEPEVAPAQVPEATVE 1012
Query: 414 SKPATATRPATTTSKPA 430
ATA P T P
Sbjct: 1013 HNHATA--PMTRAPAPE 1027
Score = 42.7 bits (101), Expect = 8e-04
Identities = 35/201 (17%), Positives = 50/201 (24%), Gaps = 9/201 (4%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
P P T A S A +R PV A P A A
Sbjct: 824 PMPLTVACASPEMASGKVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVV 883
Query: 336 PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP 395
P A A V P T+ V +A P+V + A+
Sbjct: 884 SAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVT--EQPQVITESDVAVAQE 941
Query: 396 ATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEE---LEA 452
A+P + TA A ++P E +E
Sbjct: 942 VA--EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999
Query: 453 AIKSGLITTPGRDNIH--YPM 471
+ + ++ H PM
Sbjct: 1000 EVAPAQVPEATVEHNHATAPM 1020
Score = 40.0 bits (94), Expect = 0.006
Identities = 25/186 (13%), Positives = 39/186 (20%), Gaps = 16/186 (8%)
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV--RKP 298
AA + ++T APV +
Sbjct: 870 VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVS 358
V + V+ +P P + A A P V +
Sbjct: 930 VITESDVAVAQEVAEHAEPVVE-PQDETADIEEAAETAEVVVAEPEV------VAQPAAP 982
Query: 359 ATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATK-PATAKPSTTSKPTTASKPA 417
+ + PA + A P T+ PA P + S
Sbjct: 983 VVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPA---PEYVPEAPRHS--- 1036
Query: 418 TATRPA 423
RP
Sbjct: 1037 DWQRPT 1042
Score = 38.5 bits (90), Expect = 0.015
Identities = 47/234 (20%), Positives = 76/234 (32%), Gaps = 32/234 (13%)
Query: 19 PVSNLFEISTEETSYNEKPQEHDDLTFETKESSFQEETHTETKVESSFQ---ETHVALET 75
PV ++ EE E+ Q + E ++ E + VE+ + E V E
Sbjct: 846 PVVRPQDVQVEEQREAEEVQVQPVVA-EVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEP 904
Query: 76 NLDDFTSQETKLDDFISA-HTEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPS 134
++ ET + I+A TE+ ++E V + P VV QD +
Sbjct: 905 QPEEVVVVETTHPEVIAAPVTEQPQVITESDVAV--AQEVAEHAEP-VVEPQDETADIEE 961
Query: 135 PAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLA 194
A + E + AE ET + P + + E + A++ +
Sbjct: 962 AAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMT 1021
Query: 195 AKVAGALVV----------------GAAAAGAAVAVKKATAAKKTDKPGPAAKP 232
A V G AAG A A+A PA +P
Sbjct: 1022 RAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHSATHHASA--------PATRP 1067
Score = 31.5 bits (72), Expect = 2.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 317 PSAPKPAAPKKPVAAP-APKPRPATAAPAPKPLTNGVTKRPVSA 359
P P P +P A A P+ A A P +P G+ R A
Sbjct: 535 PDVPPAPTPAEPAAPVVAAAPKAAAATPPAQP---GLLSRFFGA 575
Score = 31.2 bits (71), Expect = 2.6
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
A +T + P AP PA P PV A APK AT P
Sbjct: 528 ALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQP 566
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 48.7 bits (116), Expect = 2e-06
Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 1/108 (0%)
Query: 257 KKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK 316
K T+ + KPA P P++ P PAP A+ A A P+
Sbjct: 98 KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157
Query: 317 PSAPKPAAPKKPVAAPA-PKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
+P+PAA P + A APKP + T
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
Score = 44.4 bits (105), Expect = 8e-05
Identities = 22/107 (20%), Positives = 30/107 (28%), Gaps = 3/107 (2%)
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
T+ + A + + V P PA A + A P KP A
Sbjct: 99 ATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRA 158
Query: 301 STITKTATSTVSAAPKPSAPKP---AAPKKPVAAPAPKPRPATAAPA 344
+ A + +A K AA KP A P T
Sbjct: 159 KSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
Score = 43.6 bits (103), Expect = 1e-04
Identities = 29/113 (25%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 216 KATAAKKTDKPGPAAKPA-SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKP 274
+ +KP P L +T A PA++ A K KP K
Sbjct: 101 SMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKS 160
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
AAPK T T + AAPKP+A K A P K
Sbjct: 161 PRPAAKAAPKPTETITAKKAKKTA--------------AAPKPTADKTATPAK 199
Score = 43.6 bits (103), Expect = 1e-04
Identities = 26/106 (24%), Positives = 30/106 (28%), Gaps = 6/106 (5%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
A V + PA P P AA P K +
Sbjct: 105 PATENKPAEVTTPVEPMGLPETPPAV-PVPAPAPAVAAAAAQAAAAP--KAPAKPRAKSP 161
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATST 310
+PA K A KP T K T APKP +T K T
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPT---ADKTATPAKKTTKK 204
Score = 42.9 bits (101), Expect = 2e-04
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 321 KPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPA 380
K + +P P P G+ + P + A + ++ + +AA P
Sbjct: 98 KATSMSEPATENKP---AEVTTPVE---PMGLPETPPAVPVPAPAPAVAAAAAQAAAAPK 151
Query: 381 APRVPLSQRTSAAKPATKPATAKPST-TSKPTTASKPATATRPATTTSKPATTTSTD 436
AP P ++ A A T + +K T A+ TA + AT K T
Sbjct: 152 APAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208
Score = 40.6 bits (95), Expect = 0.001
Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 178 AQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPL 237
A + AE +T + V A A A A AA K +KP
Sbjct: 106 ATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAA--------PKAPAKPR 157
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAP 290
AK+ A KP + K A TA APKP P K T
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTA-AAPKPTADKTATPAKKTTKKKKTKA 209
Score = 39.4 bits (92), Expect = 0.004
Identities = 25/121 (20%), Positives = 34/121 (28%), Gaps = 8/121 (6%)
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
S + K + + A A P +P+ P P APAP
Sbjct: 94 SDLQKATSMSEPATENKPAE-VTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKA 152
Query: 361 TTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATAT 420
R S + +A KP A K A KP+ T A K
Sbjct: 153 PAKPRAKSPRPAAKAAPKPTETIT-------AKKAKKTAAAPKPTADKTATPAKKTTKKK 205
Query: 421 R 421
+
Sbjct: 206 K 206
Score = 37.9 bits (88), Expect = 0.011
Identities = 30/121 (24%), Positives = 38/121 (31%), Gaps = 9/121 (7%)
Query: 185 EESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTK 244
+++T+ S+ A + A V A P PA PA A
Sbjct: 97 QKATSMSEPATENKPAEVTTPVEPMGLPETPPA-------VPVPAPAPAVAAAAAQAAAA 149
Query: 245 TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT 304
AKP + A KP K K T AAPK T P +K T
Sbjct: 150 PKAPAKPRAKSPRPAAKAAPKPTETITAK-KAKKTAAAPKPTADKT-ATPAKKTTKKKKT 207
Query: 305 K 305
K
Sbjct: 208 K 208
Score = 35.6 bits (82), Expect = 0.064
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 148 EAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAA 207
V TP + + P VP + + + + AA
Sbjct: 112 AEVTTPVE---PMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRPAAKAA 168
Query: 208 AGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTA 248
+ A K P P A + P KTT K T A
Sbjct: 169 PKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTKA 209
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 50.1 bits (120), Expect = 3e-06
Identities = 29/121 (23%), Positives = 41/121 (33%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK 235
+E + + E S D+ A +G + A G V V + T PAA PA+
Sbjct: 73 KEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAPAAA 132
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
AK T A +P A+ PA +PAP P+ V
Sbjct: 133 AAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRV 192
Query: 296 R 296
Sbjct: 193 P 193
Score = 48.1 bits (115), Expect = 1e-05
Identities = 20/69 (28%), Positives = 24/69 (34%)
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
AP A+ A T PK +AP P P P +P APA KP
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
Query: 352 VTKRPVSAT 360
V + T
Sbjct: 182 VARADPRET 190
Score = 42.4 bits (100), Expect = 7e-04
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 294 PVRKPVASTITKT------------ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
+R P + ITK S + P A PAA A +P A
Sbjct: 89 DIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAA 148
Query: 342 AP-APKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLS 387
AP P + T + + + T + A P RVP+S
Sbjct: 149 APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVPMS 195
Score = 40.4 bits (95), Expect = 0.003
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 374 ASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTT 433
AA PAA +++T+ KP T +P SKPT + PA P T
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPE-PAPAAKPPPTPV 182
Query: 434 STDIEDEMNQPFTP 447
+ E P +
Sbjct: 183 ARADPRETRVPMSR 196
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 49.7 bits (118), Expect = 6e-06
Identities = 42/164 (25%), Positives = 58/164 (35%), Gaps = 21/164 (12%)
Query: 205 AAAAGAAVAVKKAT-----AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT 259
AAA+ A AV + T +A+ +K A KP +P A+T T TA+ A+ KT
Sbjct: 362 AAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKT 421
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
A P P P AP TA A T+ ++ A +
Sbjct: 422 A----GPVSNQENNDVP-PWEDAPDEAQTAAGTAQ-----------TSAKSIQTASEAET 465
Query: 320 PKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
P K AA P + P+ P+ V T A
Sbjct: 466 PPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFA 509
Score = 41.6 bits (97), Expect = 0.002
Identities = 35/167 (20%), Positives = 49/167 (29%), Gaps = 8/167 (4%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P+ + T A KP P + +T T SAA PS K A P P
Sbjct: 380 PSAQTAEKETAAKKPQPR---PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPW 436
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
A T T + + T + S + A PLS+ P+
Sbjct: 437 EDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSE-----VPSE 491
Query: 398 KPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQP 444
P A P+ + T P P + E+ P
Sbjct: 492 NPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPP 538
Score = 37.0 bits (85), Expect = 0.049
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 3/129 (2%)
Query: 158 NSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKA 217
N+E +E ++ Q AE + A+ A A+ AG +
Sbjct: 374 NTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTAS--AAAMPSEGKTAGPVSNQENN 431
Query: 218 TAAKKTDKPGPAAKPA-SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAP 276
D P A A + + + + A P + V K + + P+
Sbjct: 432 DVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSE 491
Query: 277 KPTTAAPKS 285
P A P
Sbjct: 492 NPIQATPND 500
Score = 33.9 bits (77), Expect = 0.37
Identities = 43/224 (19%), Positives = 59/224 (26%), Gaps = 15/224 (6%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT 287
P A + A T + A + K+TA KP P+P + A P A S
Sbjct: 360 PLAAASCD--ANAVIENTELQSPSAQTAEKETAAK--KPQPRPEAETAQTPVQTA--SAA 413
Query: 288 TAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
P PV + P AP A A TA+ A P
Sbjct: 414 AMPSEGKTAGPV------SNQENNDVPPWEDAPDEAQTAAG-TAQTSAKSIQTASEAETP 466
Query: 348 LTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTT 407
N V+K + T + S + A P V A P
Sbjct: 467 PENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDND 526
Query: 408 SKPTTASK--PATATRPATTTSKPATTTSTDIEDEMNQPFTPEE 449
P ++ P A + + TP
Sbjct: 527 CPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSA 570
Score = 29.3 bits (65), Expect = 9.1
Identities = 28/146 (19%), Positives = 44/146 (30%), Gaps = 6/146 (4%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP--VAAPAPKPRPATAAPAPKPLTN 350
AP+ + + + +A K A KKP P A A +
Sbjct: 359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSE 418
Query: 351 GVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKP 410
G T PV + + + A+ AA S ++ A++ T + SK
Sbjct: 419 GKTAGPV--SNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQT--ASEAETPPENQVSKN 474
Query: 411 TTASKPATATRPATTTSKPATTTSTD 436
A A + P T D
Sbjct: 475 KAADNETDAPLSEVPSENPIQATPND 500
>gnl|CDD|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in
prokaryotes. Ribonuclease H (RNase H) is classified
into two evolutionarily unrelated families, type 1
(prokaryotic RNase HI, eukaryotic RNase H1 and viral
RNase H) and type 2 (prokaryotic RNase HII and HIII, and
eukaryotic RNase H2). RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is involved in DNA
replication, repair and transcription. RNase H is widely
present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD),
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability.
Length = 139
Score = 45.6 bits (109), Expect = 9e-06
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 716 EVIGIWEALKYSASLKNN-EILILTDSKSACQKLS-----------KNCLNTTPTHLEL- 762
E+ + EAL+ +LK +L+ TDS+ ++ K +++L
Sbjct: 45 ELTAVIEALE---ALKEPCPVLLYTDSQYVINGITKWIHGWKKNGWKTADGKPVKNVDLW 101
Query: 763 -EILSSYKHLQNTCKTVKLAWIKGHEGIKGNVEVDRLAKYA 802
E+ + Q V W+KGH G GN D LA A
Sbjct: 102 QELDALLAKHQ-----VTWHWVKGHAGHPGNERADELANAA 137
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 49.0 bits (117), Expect = 1e-05
Identities = 52/328 (15%), Positives = 89/328 (27%), Gaps = 46/328 (14%)
Query: 82 SQETKLDDFISAHTEKTPEVSEPKEEVLDDLV---------SVPTSVPDVVPNQDANEES 132
S + + + T E S V D V + +V D +D E +
Sbjct: 476 SSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLESN 535
Query: 133 PSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSD 192
D QD ++ + E+ S + S
Sbjct: 536 GLDEGDYAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSP 595
Query: 193 LAAKVAGALVVGAAAAGAAV-----AVKKATAAKKTD------------KPGPAAKPASK 235
++A V AAA A AV A + +D K KP +
Sbjct: 596 ISA-------VTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTP 648
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPT-------TAAPKSTTT 288
P + + A+ P + +A+ P + AT + A P
Sbjct: 649 PSRAPPASLSKPASSP--DASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDP 706
Query: 289 APKP----APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
+P AP A +S + + ++ + A P+ + +PA
Sbjct: 707 YDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPA 766
Query: 345 PKPLTNGVTKRPVSATTTASRTSSSSVT 372
+ SS S+T
Sbjct: 767 STTALTQTSSEVQDTELNLVLLSSGSIT 794
Score = 36.6 bits (85), Expect = 0.060
Identities = 52/396 (13%), Positives = 107/396 (27%), Gaps = 47/396 (11%)
Query: 95 TEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPT 154
+ E+S P ++ +V N+ + + E+ A
Sbjct: 368 VDDPAEISLP---EGQTPSALAAAVQAPHANEPQFVNAAPAE--KKTALTEQTTAQQQVQ 422
Query: 155 DETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAV 214
N+E + +E ++A ES + +++ A ++ A G A+ + A
Sbjct: 423 AA-NAEAVAEADASAEPADTVEQALDDESELLAALNAEQAVILSQAQSQGFEASSSLDAD 481
Query: 215 KKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKP 274
A + A + P T T+A+ + + +A+ +
Sbjct: 482 NSAVPEQI---DSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLESNGLD 538
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
+ + ++ + + + A P +P
Sbjct: 539 EGDYAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSA-QSAAEAQPSSQSLSPIS 597
Query: 335 KPRPATAAPA-----------------------------PKPLTNGVTKRPVSATTTASR 365
A A+ A K + K P S AS
Sbjct: 598 AVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAPPASL 657
Query: 366 TSSSSVTSASAAKPAAPRVPLSQRTS--AAKPATKPATAKPSTTSKPTTASKP------A 417
+ +S AS + P + + + A + + P+ P +P
Sbjct: 658 SKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPE 717
Query: 418 TATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAA 453
A+ + S +ED N E +A
Sbjct: 718 VASANDGPNNAAEGNLSESVEDASNSELQAVEQQAT 753
Score = 35.5 bits (82), Expect = 0.15
Identities = 73/443 (16%), Positives = 116/443 (26%), Gaps = 86/443 (19%)
Query: 98 TPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIV----EEKEAVVTP 153
PE K +DD + S+P+ +P + Q + E+K A+
Sbjct: 358 VPEKP-VKRWQVDDPAEI--SLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQ 414
Query: 154 TDETNSETAEKETPLSEVPVIPQEAQT--VESAEESTASSDLAAKVA-----------GA 200
T A ++E + A T +ES + L A+ A A
Sbjct: 415 TTAQQQVQAANAEAVAEADASAEPADTVEQALDDESELLAALNAEQAVILSQAQSQGFEA 474
Query: 201 LVVGAAAAGAAVAVKKATAAKK------TDKPGPAAKPASKPLAKTTTTKTTTAAKPAIS 254
A A +TA + TD ++ A T +A S
Sbjct: 475 SSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLES 534
Query: 255 PVKKTATTTAKPAPKPATKPA-------------PKPTTAAPKSTTTAPKPAPVRKPVAS 301
AP A + +A + + A S
Sbjct: 535 NGLDEGDYAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLS 594
Query: 302 TITKTATSTVSAA-----------------------PKPS-APKPAAPKKPVAAPAPKP- 336
I+ T+ S A PK K +A +KP P+ P
Sbjct: 595 PISAVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPPSRAPP 654
Query: 337 RPATAAPA-PKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP---------- 385
+ + P + A+ S AS + PA P VP
Sbjct: 655 ASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEE 714
Query: 386 -----LSQRTSAAKPATKPATAKPSTTSKPTTASKPATAT---RPATTTSKPATTTSTDI 437
+ + + ++ A + A S +TT T
Sbjct: 715 APEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQT 774
Query: 438 EDEMNQPFTPEELEAAIKSGLIT 460
E+ E + SG IT
Sbjct: 775 SSEVQD---TELNLVLLSSGSIT 794
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 48.8 bits (117), Expect = 1e-05
Identities = 44/210 (20%), Positives = 55/210 (26%), Gaps = 22/210 (10%)
Query: 194 AAKVAGALVVGAAAAGAAVAVKKAT-AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
A+ A AA AVA A AKK P A + A K
Sbjct: 470 EARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQ 529
Query: 253 ISPVKKTATTTAKPAPKPAT----------KPAPKPTTAAPKSTTTAPKPAPVRKPVAST 302
+ A PK A K A + A PK A V +A
Sbjct: 530 ARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARA 589
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP------ 356
K A ++A PKK A A A A P
Sbjct: 590 KAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVA 649
Query: 357 -----VSATTTASRTSSSSVTSASAAKPAA 381
A A + +++ A K AA
Sbjct: 650 AAIARAKARKAAQQQANAEPEEAEDPKKAA 679
Score = 40.3 bits (95), Expect = 0.004
Identities = 39/209 (18%), Positives = 60/209 (28%), Gaps = 4/209 (1%)
Query: 215 KKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKP 274
KKA A+ A ++ AK K P +A A+ A K +
Sbjct: 474 KKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARP-DNSAVIAAREARKAQARA 532
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
+ PK A V +A K A + A P A
Sbjct: 533 RQA---EKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARA 589
Query: 335 KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAK 394
K + A A V + A+ + + A A P P+ R +A
Sbjct: 590 KAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVA 649
Query: 395 PATKPATAKPSTTSKPTTASKPATATRPA 423
A A A+ + + + A + A
Sbjct: 650 AAIARAKARKAAQQQANAEPEEAEDPKKA 678
Score = 39.5 bits (93), Expect = 0.006
Identities = 47/199 (23%), Positives = 67/199 (33%), Gaps = 9/199 (4%)
Query: 144 VEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLA--AKVAGAL 201
V+ K+A T + + + + AE+ A++ A VA A+
Sbjct: 495 VKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAI 554
Query: 202 VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTAT 261
A A AA A A ++ D P AA A+ AK A+ V +
Sbjct: 555 -ARAKAKKAAQQAANAEAEEEVD-PKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDP 612
Query: 262 TTAKPAPKPATKPAPKPTTAAPKSTTTA--PKPAPVRKPVASTITKTATSTVSAAPKPSA 319
A A A A K A P+ A V +A + A + A A
Sbjct: 613 KKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEA 672
Query: 320 --PKPAAPKKPVA-APAPK 335
PK AA +A A A K
Sbjct: 673 EDPKKAAVAAAIARAKAKK 691
Score = 38.4 bits (90), Expect = 0.015
Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 13/191 (6%)
Query: 162 AEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAA------AGAAVAVK 215
K+ ++ VI A+ SA + + A A AAA A A A+
Sbjct: 496 KAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIA 555
Query: 216 KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTA--TTTAKPAPKPATK 273
+A AKK + A+ + K K AA A + KK A +A+P + A
Sbjct: 556 RA-KAKKAAQQAANAEAEEEVDPK----KAAVAAAIARAKAKKAAQQAASAEPEEQVAEV 610
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
K AA + A K + V+AA + + AA ++ A P
Sbjct: 611 DPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPE 670
Query: 334 PKPRPATAAPA 344
P AA A
Sbjct: 671 EAEDPKKAAVA 681
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 47.9 bits (113), Expect = 2e-05
Identities = 47/214 (21%), Positives = 67/214 (31%), Gaps = 13/214 (6%)
Query: 223 TDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT-ATTTAKPAPKPATKPAPKPTTA 281
P + P T+ T T T + T TT+A P T P
Sbjct: 453 PSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 282 APKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
+P + T+ P P I T T+T S P +P+ +P
Sbjct: 513 SPTTQKTSDTPN-ATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVV 571
Query: 342 APAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPAT 401
AP LT+ VT T +S TS +P P S S + T T
Sbjct: 572 TSAPSVLTSAVT--TGQHGTGSSPTSQ---------QPGIPSSSHSTPRSNSTSTTPLLT 620
Query: 402 AKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
+ T + T P+ + +T P T
Sbjct: 621 SAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT 654
Score = 47.9 bits (113), Expect = 2e-05
Identities = 37/209 (17%), Positives = 61/209 (29%), Gaps = 13/209 (6%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
P A + + +T T TTT K K TT + P TTA P +
Sbjct: 396 NPVADAKTLIITRTATNATTTTHKVVFH--KAPDTTKSVIFVYTLVHVEPHKTTAVPTTP 453
Query: 287 TT-APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
+ P T +T S P+ ++P +A P A P
Sbjct: 454 SLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRT----TSATPNATSPTPAVTTP 509
Query: 346 KPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPS 405
P + T+ + ++S A P + + + P
Sbjct: 510 N------ATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPV 563
Query: 406 TTSKPTTASKPATATRPATTTSKPATTTS 434
+ + + A TT + T +S
Sbjct: 564 NNTNTPVVTSAPSVLTSAVTTGQHGTGSS 592
Score = 44.0 bits (103), Expect = 3e-04
Identities = 73/376 (19%), Positives = 113/376 (30%), Gaps = 43/376 (11%)
Query: 101 VSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSE 160
V++ K ++ + T+ V A + + S T VE + PT +
Sbjct: 398 VADAKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPP 457
Query: 161 TAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAA 220
+ T + P T S S A A T
Sbjct: 458 ASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQ 517
Query: 221 KKTDKP----------GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
K +D P G S P T+ T+ SPV T T AP
Sbjct: 518 KTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSV 577
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA----------P 320
T A S+ T+ +P P +S T + ST + SA
Sbjct: 578 LTS-AVTTGQHGTGSSPTSQQPGI---PSSSHSTPRSNSTSTTPLLTSAHPTGGENITEE 633
Query: 321 KPAAPKK-PVAAPAPKPRPAT---------AAPAPKPLTNGVTK-RPVSATTTASRTSSS 369
P+ P V+ +P P P T ++ + P VT+ P T+ S S
Sbjct: 634 TPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQ 693
Query: 370 SVTSASAAKPAAPRVPLSQRTSA--AKPATKPATAKPSTTSKPTTASKPATATRPA---- 423
+ ++ TS +T P T + + + P A+ + +
Sbjct: 694 KTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRP 753
Query: 424 --TTTSKPATTTSTDI 437
T TS P TT +
Sbjct: 754 RWTFTSPPVTTKQATV 769
Score = 40.2 bits (93), Expect = 0.004
Identities = 62/362 (17%), Positives = 107/362 (29%), Gaps = 22/362 (6%)
Query: 59 ETKVESSFQETHVALETNLDDFTSQETKLDDFISAHTEKTPEVSEPKEEVLDDLVSVPTS 118
+T F T V +E + L + T T + + +
Sbjct: 427 DTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDT 486
Query: 119 VPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEA 178
P + T + + T S T + P
Sbjct: 487 SPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGT 546
Query: 179 QTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK-PL 237
+V +A + + + V A T+A T + G + P S+ P
Sbjct: 547 TSVPNATSPQVTEE-------SPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPG 599
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
+++ T + + +P+ +A T T P T +T +P P P
Sbjct: 600 IPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHV----STLSPGPGPGTT 655
Query: 298 PVASTITKTATSTVSAA-------PKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTN 350
S ++TS P P+A P+AP A A + T+
Sbjct: 656 SQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETS 715
Query: 351 GVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKP 410
G T ++ T ++ +A+ P + L R + P P T K +T P
Sbjct: 716 GSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSP---PVTTKQATVPVP 772
Query: 411 TT 412
T
Sbjct: 773 PT 774
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 46.7 bits (111), Expect = 3e-05
Identities = 24/109 (22%), Positives = 31/109 (28%), Gaps = 1/109 (0%)
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
LA TAA PA S +K T A A P + A +
Sbjct: 70 VLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLS 129
Query: 296 R-KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
T T + P++ + AP APA RP
Sbjct: 130 AVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRPEERVK 178
Score = 45.5 bits (108), Expect = 7e-05
Identities = 38/160 (23%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 142 DIVEEKEAVVT-PTDETNSE-TAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAG 199
D V+ E +V TD+ E + + L E+ +E TVES + LA G
Sbjct: 26 DTVKRDENIVEIETDKVVLEVPSPADGVLQEILF--KEGDTVESGQV------LAILEEG 77
Query: 200 ALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT 259
A A + ++ AA P AA S A K A+ T
Sbjct: 78 NDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVT 137
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPV 299
T + K PA P A PA +P
Sbjct: 138 GRVTKEDIIKKTEAPAS---AQQPAPAAAAKAPANFTRPE 174
Score = 38.2 bits (89), Expect = 0.014
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
+ + + + PAA A + A +G+ V T R
Sbjct: 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGR- 139
Query: 367 SSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
VT K SA +PA A P+ ++P K
Sbjct: 140 ----VTKEDIIKKTE------APASAQQPAPAAAAKAPANFTRPEERVK 178
Score = 35.9 bits (83), Expect = 0.088
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 318 SAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAA 377
AAP + A+AA AP S + A R + SA
Sbjct: 77 GNDATAAPPAKSGEEKEETPAASAAAAP-----TAAANRPSLSPAARRLAKEHGIDLSAV 131
Query: 378 KPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
+++ K + +P+ A PA TRP
Sbjct: 132 PGTGVTGRVTKEDIIKKTEAPASAQQPAP---AAAAKAPANFTRP 173
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 46.4 bits (111), Expect = 4e-05
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL--TNGVTKRPVSATTTAS 364
A +AA +A AAP + AA A + +PA + L NG+ V T
Sbjct: 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGG 140
Query: 365 RTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKP 410
R + V +A AA AAP AA A PA A ++P
Sbjct: 141 RVTKEDVLAALAAAAAAP---------AAPAAAAPAAAPAPLGARP 177
Score = 42.9 bits (102), Expect = 5e-04
Identities = 40/154 (25%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 208 AGAAVAVKKATAAKKTDK-----PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATT 262
G AV + +TDK P PAA S+ LA+ T T I
Sbjct: 26 PGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGAA 85
Query: 263 TAKPAPKPATKPAPKPTTAAPKSTTTAPKPAP-VRKPVASTITKTATSTVSAAPK----- 316
A A A AP AA + + +P RK A S V K
Sbjct: 86 AAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAE--NGLDASAVKGTGKGGRVT 143
Query: 317 -------PSAPKPAAPKKPVAAPAPKPRPATAAP 343
+A A AAPA P P A P
Sbjct: 144 KEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARP 177
Score = 34.4 bits (80), Expect = 0.24
Identities = 43/158 (27%), Positives = 58/158 (36%), Gaps = 15/158 (9%)
Query: 142 DIVEEKEAVVT-PTDETNSE-TAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAG 199
D V+ E +V TD+ E A LSE+ + +E TV + D A
Sbjct: 28 DAVKRDEVLVEIETDKVVLEVPAPAAGVLSEI--LAEEGDTVTVGQV-LGRIDEGAAAGA 84
Query: 200 ALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT 259
A AAAA AA A +A AA ++ A PA++ LA A+ A+ K
Sbjct: 85 AAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLA---AENGLDAS--AVKGTGKG 139
Query: 260 ATTT-----AKPAPKPATKPAPKPTTAAPKSTTTAPKP 292
T A A A AP A +P
Sbjct: 140 GRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARP 177
Score = 30.2 bits (69), Expect = 4.6
Identities = 27/130 (20%), Positives = 39/130 (30%), Gaps = 20/130 (15%)
Query: 129 NEESPSPAVDLTQDIVEEKEAVVTP------TDETNSETAEKETPLSEVPVIPQEAQTVE 182
E P+PA + +I+ E+ VT DE + A + AQ
Sbjct: 45 VLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQA 104
Query: 183 SAEESTASSDL--------------AAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGP 228
+A ++ L A+ V G G +A A AA
Sbjct: 105 AAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAA 164
Query: 229 AAKPASKPLA 238
A A PL
Sbjct: 165 APAAAPAPLG 174
>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein;
Provisional.
Length = 408
Score = 45.2 bits (107), Expect = 9e-05
Identities = 36/197 (18%), Positives = 54/197 (27%), Gaps = 6/197 (3%)
Query: 182 ESAEESTASSDLAAKVAGALVVGAAAAG---AAVAVKKATAAKKTDKPGPAAKPASKPLA 238
E + LA + + V T A KT +K A K
Sbjct: 72 EPLVSDKLADLLAQQANLLIPVDETLPVITDEQSLSSPLTPALKTSALAALSKNAQKDEK 131
Query: 239 KTTTTKTTTAAKPAI-SPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
+ A+ A+ + + TT PA KPT +
Sbjct: 132 ADDLSDEDLASLSALFAMLPGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLS 191
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPV 357
T+ +A P + PA P A A P P+T +
Sbjct: 192 SDEHEKGLTSAQLTTAQPDDAPGTPAQP--LTPLAAEAQAKAEVISTPSPVTAAASPTIT 249
Query: 358 SATTTASRTSSSSVTSA 374
T T+++ V SA
Sbjct: 250 PHQTQPLPTAAAPVLSA 266
Score = 36.8 bits (85), Expect = 0.039
Identities = 43/197 (21%), Positives = 69/197 (35%), Gaps = 28/197 (14%)
Query: 142 DIVEEKEAVVTPTDETNSETAEKETPLSEVP---------VIPQEAQTVESA----EEST 188
D++ ++ ++ P DET ++++ S + + + AQ E A +E
Sbjct: 81 DLLAQQANLLIPVDETLPVITDEQSLSSPLTPALKTSALAALSKNAQKDEKADDLSDEDL 140
Query: 189 AS-SDLAAKVAG--ALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKT 245
AS S L A + G A A + +K T K P + + + T
Sbjct: 141 ASLSALFAMLPGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLT 200
Query: 246 TTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITK 305
+ T PA P A K+ + P+PV + TIT
Sbjct: 201 SAQL---------TTAQPDDAPGTPAQPLTPLAAEAQAKAEVIST-PSPVTAAASPTITP 250
Query: 306 TAT--STVSAAPKPSAP 320
T +AAP SAP
Sbjct: 251 HQTQPLPTAAAPVLSAP 267
Score = 36.0 bits (83), Expect = 0.068
Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 31/187 (16%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDK---------- 225
Q+A + +E+ ++ L + A K A +K D
Sbjct: 85 QQANLLIPVDETLPVITDEQSLSSPLTPALKTSALAALSKNAQKDEKADDLSDEDLASLS 144
Query: 226 ------PG-PAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKP 278
PG P + + + T + + T T + +
Sbjct: 145 ALFAMLPGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQL 204
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
TTA P P P+ A A + V + P P AA +P P
Sbjct: 205 TTAQPDDAPGTPA-QPLTPLAAEA---QAKAEVISTPSPVT----------AAASPTITP 250
Query: 339 ATAAPAP 345
P P
Sbjct: 251 HQTQPLP 257
Score = 34.1 bits (78), Expect = 0.29
Identities = 45/257 (17%), Positives = 65/257 (25%), Gaps = 18/257 (7%)
Query: 188 TASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAA-----KPASKPLAKTTT 242
T D + G AA A+ K P K T
Sbjct: 9 TTDVDTTTGLPGGKATDAAQDFLALLAGALGGETTQGKDAPLTLADLQAAGGKLSKGLLT 68
Query: 243 TKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAA---PKSTTTAPKPAPVRKPV 299
TK ++ + P + + + ++ P T+A
Sbjct: 69 TKGEPLVSDKLADLLAQQANLLIPVDETLPVITDEQSLSSPLTPALKTSALAALS---KN 125
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPAT-AAPAPKPLTNGVTKRPVS 358
A K + SA P + P A P LT + P
Sbjct: 126 AQKDEKADDLSDEDLASLSALFAMLPGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQD 185
Query: 359 ATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTS--KPTTASKP 416
T T S +++ A P P A AK S P TA+
Sbjct: 186 ETHTLSSDEHEKGLTSAQLTTAQPDDAPGTPAQPLTPLAAEAQAKAEVISTPSPVTAAAS 245
Query: 417 AT----ATRPATTTSKP 429
T T+P T + P
Sbjct: 246 PTITPHQTQPLPTAAAP 262
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 45.6 bits (109), Expect = 9e-05
Identities = 56/260 (21%), Positives = 71/260 (27%), Gaps = 56/260 (21%)
Query: 119 VPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETP----LSEVPVI 174
A + +PA A E + P ++EV VI
Sbjct: 77 AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVI 136
Query: 175 P---QEAQTVESAEES--TASSDLA-----AKVAGALVVGAAAAGAAVAVKKATAAKKTD 224
+ TVE ++S T +D A + VAG + + VK
Sbjct: 137 EWLVKVGDTVE-EDQSLITVETDKATMEIPSPVAGVVK--------EIKVKVGDKVSVGS 187
Query: 225 KPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPK 284
L AA A + A A PAP PA AP A
Sbjct: 188 -----------LLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236
Query: 285 STTTAPKPA-P-VRK----------PVAST-----ITKTATSTVSAAPKPSAPKPAAPKK 327
+ A P VR+ V T ITK V A K AA
Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE---DVQAFVK--GAMSAAAAA 291
Query: 328 PVAAPAPKPRPATAAPAPKP 347
AA A P PK
Sbjct: 292 AAAAAAAGGGGLGLLPWPKV 311
Score = 40.6 bits (96), Expect = 0.003
Identities = 19/61 (31%), Positives = 22/61 (36%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGV 352
V + A +AAP +AP AA P APA PA AAPA
Sbjct: 183 VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKA 242
Query: 353 T 353
Sbjct: 243 P 243
Score = 35.6 bits (83), Expect = 0.12
Identities = 38/191 (19%), Positives = 49/191 (25%), Gaps = 35/191 (18%)
Query: 195 AKVAGALVV---GAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKP 251
V G L V AAA AA A A A A A P
Sbjct: 66 VSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVP 125
Query: 252 AISPVKKTATTTAKPAPKPATKPAPKP-----------TTAAPKSTTTAPKPAP------ 294
I + + + K T K+T P P
Sbjct: 126 DIGEITEV----------EVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEI 175
Query: 295 -VRK----PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
V+ V S + + + A + A AAPAP P A A A P
Sbjct: 176 KVKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAA 235
Query: 350 NGVTKRPVSAT 360
+ A+
Sbjct: 236 AAAPGKAPHAS 246
Score = 32.9 bits (76), Expect = 0.73
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
A A A A AAPAP P +A + + ++ + A
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAP----------AAAAAPAAAAPAAAAAPGKAP 243
Query: 379 PAAPRV 384
A+P V
Sbjct: 244 HASPAV 249
>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and
repair].
Length = 154
Score = 43.1 bits (102), Expect = 1e-04
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 14/144 (9%)
Query: 673 PNAICIYTD-ASKKNEKV---GAAWFCPTYKSKACFKLHPATSTYTAEVIGIWEALKYSA 728
+ I+TD A N GA + + T+ AE+ + EAL+
Sbjct: 1 MKKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNNR-AELRALIEALEALK 59
Query: 729 SLKNNEILILTDSKSACQKLSKNCLN---------TTPTHLELEILSSYKHLQNTCKTVK 779
L E+ + TDSK + +++ + ++ L + V
Sbjct: 60 ELGACEVTLYTDSKYVVEGITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVF 119
Query: 780 LAWIKGHEGIKGNVEVDRLAKYAT 803
W+KGH G N D+LA+ A
Sbjct: 120 WEWVKGHAGHPENERADQLAREAA 143
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 44.4 bits (105), Expect = 1e-04
Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 22/126 (17%)
Query: 270 PATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
+PAP+ T A P+P P + V V AAP+P + + P
Sbjct: 111 GEEEPAPQEETVADPIQALQPRPRPDVEEVL----------VPAAPEPPSYEETIKPGPA 160
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
P A A PA T + +P+ V R
Sbjct: 161 PVEEPVDSMAIAVPAI------------DTPVTLELPPAPQPPPPVVPQPSTMVVHRRSR 208
Query: 390 TSAAKP 395
+
Sbjct: 209 IKRTRS 214
Score = 34.8 bits (80), Expect = 0.14
Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 216 KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPA 275
A + P A +P +P + +K +P A
Sbjct: 115 PAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAI-AV 173
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATS 309
P T AP+P P P ST+ S
Sbjct: 174 PAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRS 207
Score = 33.2 bits (76), Expect = 0.36
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITK- 305
A +P P + A P P P+ + T P PAPV +PV S
Sbjct: 127 QALQPRPRPDVEEVLVPAAPEP-----PSYEET--------IKPGPAPVEEPVDSMAIAV 173
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
A T P AP+P P P + R
Sbjct: 174 PAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206
Score = 29.4 bits (66), Expect = 7.5
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT 272
+ +P P+ + KP + + A+ + T PAP+P
Sbjct: 135 PDVEEVLVPAAPEP-PSYEETIKPGP-APVEEPVDSMAIAVPAIDTPVTLELPPAPQPPP 192
Query: 273 KPAPKPTTAA 282
P+P+T
Sbjct: 193 PVVPQPSTMV 202
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 45.8 bits (109), Expect = 1e-04
Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 16/234 (6%)
Query: 221 KKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTT 280
K K KP K K + +K A S V + + K KP K +
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKA-SVVGNSKRVDSDEKRKLDDKPDNKKSN 1219
Query: 281 AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPAT 340
++ + K + K+ + S + + + + P P+ +
Sbjct: 1220 SSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVS 1279
Query: 341 AAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPA 400
A P + S S + + + AA K +
Sbjct: 1280 AVQYSPPPPSKRPDGE-------SNGGSKPSSPTKKKVK-----KRLEGSLAALKKKKKS 1327
Query: 401 TAKPSTTSKPTTASKPATATRPATTTSKPATT---TSTDIEDEMNQPFTPEELE 451
K + K T K A+A++ + +P +S++ +D+ + +E +
Sbjct: 1328 EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDD 1381
Score = 36.6 bits (85), Expect = 0.059
Identities = 35/312 (11%), Positives = 83/312 (26%), Gaps = 24/312 (7%)
Query: 40 HDDLTFETKESSFQEETHTETKVESSFQETHVALETNLDDF---------TSQETKLDDF 90
D+ + E EE + + + E + + + K++
Sbjct: 1048 FKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKL 1107
Query: 91 ISAHTEKTPEV-----SEPKE---EVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQD 142
+ +K E+ + PK+ E LD +V + A E+
Sbjct: 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKAS 1167
Query: 143 IVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQ-TVESAEESTASSDLAAKVAGAL 201
+ + + + S + + ++ + ++ ++
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
Query: 202 VVGAAAAGAAVAVKKATAAKKTDKPGPAA--KPASKPLAKTTTTKTTTAAKPAISPVKKT 259
+VK+ + K + +S L+K K A+
Sbjct: 1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPP 1287
Query: 260 ATTTAKPAPKPATKP--APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTV--SAAP 315
+ +KP K + A + + K + + V ++A
Sbjct: 1288 PSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Query: 316 KPSAPKPAAPKK 327
+ S KK
Sbjct: 1348 QSSRLLRRPRKK 1359
Score = 36.6 bits (85), Expect = 0.071
Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 15/188 (7%)
Query: 215 KKATAAKKTDKPGPAAKPASKPLAKTTTT---KTTTAAKPAISPVKKTATTTAKPAPKPA 271
K KK +K AS K KP + + +
Sbjct: 1174 LKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKT 1233
Query: 272 TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA 331
K ++ + + ++K APK + +P P
Sbjct: 1234 KPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP--KNAPKRVSAVQYSPPPPSKR 1291
Query: 332 P------APKPRPATAAPAPKPLTNG----VTKRPVSATTTASRTSSSSVTSASAAKPAA 381
P KP T K L K+ T + S + V ASA++ +
Sbjct: 1292 PDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSR 1351
Query: 382 PRVPLSQR 389
++
Sbjct: 1352 LLRRPRKK 1359
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 44.9 bits (106), Expect = 1e-04
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 257 KKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR-KPVASTITKTATSTVSAAP 315
K T P AP PT + P S + AP S ++AT+T +P
Sbjct: 76 KPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESP 135
Query: 316 KPSAPKPA 323
S P
Sbjct: 136 STSVPSSG 143
Score = 41.4 bits (97), Expect = 0.002
Identities = 14/73 (19%), Positives = 26/73 (35%)
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
T T A PA +P T + PA + A + KS + A + +
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 301 STITKTATSTVSA 313
+++ + + S
Sbjct: 137 TSVPSSGSDAAST 149
Score = 39.1 bits (91), Expect = 0.009
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTT 362
++K T T AP + P A P +P + A + + + SAT T
Sbjct: 74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEE---SATAT 130
Query: 363 ASRTSSSSVTSA 374
A + S+SV S+
Sbjct: 131 APESPSTSVPSS 142
Score = 37.6 bits (87), Expect = 0.021
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 366 TSSSSVTSASAAKPAAPR-VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPAT 424
+ + T A A P P + A PA+ + A S + + + + ATAT P
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAP-- 132
Query: 425 TTSKPATTTSTDIEDEMNQPFTPEELEAAI 454
P+T+ + D + E E I
Sbjct: 133 --ESPSTSVPSSGSDAASTLVVGSERETTI 160
Score = 35.6 bits (82), Expect = 0.089
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 21/92 (22%)
Query: 256 VKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
V K T T K AP PA PT+A + + PA +SAAP
Sbjct: 74 VSKPKTGTGKVAP-----PAATPTSAPTPTPSPPASPAS---------------GMSAAP 113
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+ + + ++ A AP+ P+T+ P+
Sbjct: 114 ASAVEEKSPSEESATATAPES-PSTSVPSSGS 144
Score = 33.3 bits (76), Expect = 0.57
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
V+ K K PAA P S P T + A PA A+ + +P
Sbjct: 74 VSKPKTGTGKVAP---PAATPTSAP-----TPTPSPPASPASGMSAAPASAVEEKSPSEE 125
Query: 272 TKPAPKPTTAAPKSTTTAPKPA 293
+ A P + + ++ A
Sbjct: 126 SATATAPESPSTSVPSSGSDAA 147
Score = 32.9 bits (75), Expect = 0.68
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 335 KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAK 394
KP+ T AP T P SA T + +S S +A PA+ ++ + +
Sbjct: 76 KPKTGTGKVAPPAAT------PTSAPTPTP-SPPASPASGMSAAPASAVEE---KSPSEE 125
Query: 395 PATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAI 454
AT A PST+ +S A+ + + T IE+ M + EE+E A+
Sbjct: 126 SATATAPESPSTS---VPSSGSDAASTLVVGSERETT-----IEEIMEMGYEREEVERAL 177
Query: 455 KS 456
++
Sbjct: 178 RA 179
Score = 31.0 bits (70), Expect = 2.8
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 283 PKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
PK+ T P +T T T T S P++ AAP V +P ATA
Sbjct: 77 PKTGTGKVAPPA------ATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
Query: 343 PAPKPLTNGVTKRPVSATTTASRTS 367
P T+ + +A+T +
Sbjct: 131 APESPSTSVPSSGSDAASTLVVGSE 155
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 44.6 bits (105), Expect = 2e-04
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPK-PAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
APV K S +T+ V+ + P+AP PA PV + AP ATA
Sbjct: 1126 APVIK---SVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAP----- 1177
Query: 352 VTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ 388
V + P++ S SV A+A + + + Q
Sbjct: 1178 VAEVPIAVPVQQSVDYMPSVAQAAAPQASVNDSAIQQ 1214
Score = 35.8 bits (82), Expect = 0.12
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 246 TTAAKPAISPVKKTATTTAKPAPK-PATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT 304
T + +SP+ A + P + AAP P P S T
Sbjct: 1112 TDSNIVKLSPLATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVAT 1171
Query: 305 KTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK 346
A + V+ P + + P A A P+ + A +
Sbjct: 1172 AVAMAPVAEVPIAVPVQQSVDYMPSVAQAAAPQASVNDSAIQ 1213
Score = 32.7 bits (74), Expect = 1.2
Identities = 25/120 (20%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 308 TSTVSAAPKPSAPKPAAPKKPVA-APAPKPRPATAAPAP-KPLTNGVTKRPVSATT---- 361
T + P A + K V AP + T + AP P+ V PV +
Sbjct: 1112 TDSNIVKLSPLATQAPVIKSVVTQAPVVQV---TISVAPAAPVLPAVVSPPVVSAAPAQS 1168
Query: 362 TASRTSSSSVTSASAAKPAAPRV-PLSQRTSAAKPATKPATAKPSTTSKPTTASKPATAT 420
A+ + + V A P V + AA P + A K T
Sbjct: 1169 VATAVAMAPVAEVPIAVPVQQSVDYMPSVAQAAAPQASVNDSAIQQVMMEVVAEKTGYPT 1228
Score = 30.4 bits (68), Expect = 5.4
Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 20/179 (11%)
Query: 372 TSASAAKPAAPRVPLSQRTSAAKPAT---KPATAKPSTTSKPTTASKPATATRPATTTSK 428
T A K + P+ Q T + PA + P ++ P + A A P
Sbjct: 1124 TQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAEVPI 1183
Query: 429 PATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPGRDNIHYPMIENLPDCNKYLNIMKMI 488
+ + P +AA + I M+E + + Y M +
Sbjct: 1184 AVPVQQS-------VDYMPSVAQAAAPQASVNDS---AIQQVMMEVVAEKTGYPTEMLEL 1233
Query: 489 CNKHWGMNPTIGLNYYKATIRATLDFGSVFYSESCSSKLKTLDKVQNQALRLAMGYLNS 547
M +G++ +I+ GSV + +L D + + L + Y+ S
Sbjct: 1234 ---EMDMEADLGID----SIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQS 1285
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 43.3 bits (102), Expect = 2e-04
Identities = 31/173 (17%), Positives = 47/173 (27%), Gaps = 11/173 (6%)
Query: 197 VAGALVVGAAAAGAAVAVKKATAAK-KTDKPGPAAKPASK------PLAKTTTTKTTTAA 249
A +V KKA G + +
Sbjct: 22 AAAVIVTFIGGLYFITHHKKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIGVPQPT 81
Query: 250 KPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATS 309
+PA + T P + + A P P+ A + + + K +
Sbjct: 82 EPAAVKDAERLT----PEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQ 137
Query: 310 TVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTT 362
+ +P PKP K APAP P P AP + K +A T
Sbjct: 138 ATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDAAETR 190
Score = 34.0 bits (78), Expect = 0.22
Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 4/146 (2%)
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK-PSAPKPAAPKKPVAA 331
P P + S KP V + + + P + P++
Sbjct: 42 APIPFLSNQGTGSLL-PNKPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLL 100
Query: 332 PAPK--PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
+ + +P + ++P + + A +++ T KP +
Sbjct: 101 EQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAP 160
Query: 390 TSAAKPATKPATAKPSTTSKPTTASK 415
A +P K A+ + KP
Sbjct: 161 APAPEPVEKAPKAEAAPPPKPKAEDA 186
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 43.2 bits (102), Expect = 3e-04
Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 7/155 (4%)
Query: 185 EESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTK 244
+ ++ A A + ++P P +P + P K
Sbjct: 26 LHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK 85
Query: 245 TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT 304
+ K KP PK +P PK + + A P R P
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPP------ 139
Query: 305 KTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPA 339
+A S AA PSA + ++ + P A
Sbjct: 140 -SAASASGAATGPSASYLSGLRRAIRRAPRYPAQA 173
Score = 38.2 bits (89), Expect = 0.012
Identities = 31/147 (21%), Positives = 44/147 (29%), Gaps = 24/147 (16%)
Query: 237 LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR 296
P P + +P P + P+PT PK KP P +
Sbjct: 38 PLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK-----EKPKPEK 92
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP 356
K PK PKP KP P+P+P +P
Sbjct: 93 K-----------------PKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQP 135
Query: 357 VSATTTASRTSSSSVTSASAAKPAAPR 383
+ AS +S + T SA+ + R
Sbjct: 136 ARPPSAAS--ASGAATGPSASYLSGLR 160
Score = 37.1 bits (86), Expect = 0.027
Identities = 30/143 (20%), Positives = 40/143 (27%), Gaps = 3/143 (2%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
AAK + P +P +P + T P +P K
Sbjct: 31 FVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPK---EK 87
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAA 324
K KP PKP P+P P + P + A A P +A A
Sbjct: 88 PKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGA 147
Query: 325 PKKPVAAPAPKPRPATAAPAPKP 347
P A+ R A P
Sbjct: 148 ATGPSASYLSGLRRAIRRAPRYP 170
Score = 35.5 bits (82), Expect = 0.068
Identities = 28/157 (17%), Positives = 43/157 (27%), Gaps = 20/157 (12%)
Query: 302 TITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
+ + P+P P KP P P P P KP K+P
Sbjct: 43 LLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKP--- 99
Query: 362 TASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR 421
KP P + KP P+ + P ++P +A
Sbjct: 100 ----------------KPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAAS 143
Query: 422 PATTTSKPATT-TSTDIEDEMNQPFTPEELEAAIKSG 457
+ + P+ + S P P + A G
Sbjct: 144 ASGAATGPSASYLSGLRRAIRRAPRYPAQARARGIEG 180
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 43.9 bits (103), Expect = 3e-04
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 7/123 (5%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
AT PAP P + P A ++ + KP + P + K + A
Sbjct: 36 ATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRA 95
Query: 320 PKPAAPKKPVAAPAPKPR-PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
P PA + AAP P T+A + T+ AS+ + + +
Sbjct: 96 PDPAVAPQLAAAPKPDAAEAFTSAAQAHEAP------ADAGTSAASKKPDPAAHTQHSPP 149
Query: 379 PAA 381
P A
Sbjct: 150 PFA 152
Score = 40.9 bits (95), Expect = 0.003
Identities = 34/139 (24%), Positives = 48/139 (34%), Gaps = 10/139 (7%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATT-TAKPAPKPATKPAPKPTTAAPKSTT 287
A + P+ + T+ T PA +P + + AP A P A + +
Sbjct: 20 ANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS 79
Query: 288 TAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPA-----TAA 342
PAP AS A + AA APKP A + +A PA A+
Sbjct: 80 EKFDPAPAPHQAASRAPDPAVAPQLAA----APKPDAAEAFTSAAQAHEAPADAGTSAAS 135
Query: 343 PAPKPLTNGVTKRPVSATT 361
P P + P A T
Sbjct: 136 KKPDPAAHTQHSPPPFAYT 154
Score = 40.9 bits (95), Expect = 0.003
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 315 PKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP---VSATTTASRTSSSSV 371
P P AA +KP APAP + A T+ +++P + T AS +
Sbjct: 27 PIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAP 86
Query: 372 --TSASAAKP---AAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTT 426
A++ P AP++ + + AA+ T A A + T+A+ T
Sbjct: 87 APHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQH 146
Query: 427 SKPATTTSTDIED 439
S P + +E
Sbjct: 147 SPPPFAYTRSMEH 159
Score = 34.7 bits (79), Expect = 0.19
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 217 ATAAKKTDKPGPAAKPASKP-----LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPK-- 269
A + P PA P S LA+ T + PA +P + P P
Sbjct: 45 APHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAP---HQAASRAPDPAVA 101
Query: 270 PATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
P APKP A ++ AP S +K
Sbjct: 102 PQLAAAPKPDAAEAFTSAAQAHEAPADAGT-SAASKKPD 139
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 43.1 bits (102), Expect = 4e-04
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
S PL +TTT T PA TT + PA AP P ++ AP A
Sbjct: 161 SVPLDTSTTTDPATTPAPA-----APVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA 215
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP 332
V AT AAP P+ A P A P
Sbjct: 216 NVDTAATPAPAAPATPD-GAAPLPTD--QAGVSTPAADP 251
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/94 (25%), Positives = 34/94 (36%)
Query: 255 PVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAA 314
V +TT PA PA T ++ A PAP P + + + + V A
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220
Query: 315 PKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
P+ PA P P + +T A P L
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPAADPNAL 254
Score = 40.0 bits (94), Expect = 0.004
Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
+ + P T+T PA P A T S A AP + V AP+
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ 214
Query: 335 KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAA 377
A PAP T + V++ +A
Sbjct: 215 ANVDTAATPAPAAPAT-------PDGAAPLPTDQAGVSTPAAD 250
Score = 36.5 bits (85), Expect = 0.048
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
T + + P PAAP + P ATA +A S+
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQ-------NAVVAPSQA 215
Query: 367 SSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATA 402
+ + + + A PA P T A +T A
Sbjct: 216 NVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 36.2 bits (84), Expect = 0.063
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
+ +G +V + +T P PAA + P + T TA PA+ P
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTP-TNSQTPAVATAPAPAVDP---QQNAVV 210
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKP---APVRKPVAST 302
P+ A A AP P A V P A
Sbjct: 211 APSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 36.2 bits (84), Expect = 0.068
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 347 PLTNGVTKRPVSATTTASRTSSSSVTSAS--AAKPAAPRVPLSQRTSAAKPATKPATAKP 404
PL T P + A+ ++ S + A AP V Q A A
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVV---APSQANVDT 219
Query: 405 STTSKPTTASKPATATRPATTTSKPATTTSTD 436
+ T P + P A P T +T + D
Sbjct: 220 AATPAPAAPATPDGAA-PLPTDQAGVSTPAAD 250
Score = 35.0 bits (81), Expect = 0.14
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 19/97 (19%)
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
PA P PA P ++ T A T+ + AP
Sbjct: 170 TDPATTPAPAAPVDTT----------PTNSQTPAVATAPAPAVDPQQNAVVAP------- 212
Query: 390 TSAAKPATKPATAKPSTTSKPTTASKPATATRPATTT 426
+ AT P+ + P A+ T +T
Sbjct: 213 --SQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247
Score = 34.6 bits (80), Expect = 0.19
Identities = 21/90 (23%), Positives = 24/90 (26%), Gaps = 7/90 (7%)
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVA 330
T PA P AAP TT P + AP + A A
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAV-DPQQNAVVAPSQANVDTA------A 221
Query: 331 APAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
PAP AP P P +
Sbjct: 222 TPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 32.7 bits (75), Expect = 0.81
Identities = 20/85 (23%), Positives = 29/85 (34%)
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
ST T AT+ AAP + P + APAP P A N T +
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226
Query: 361 TTASRTSSSSVTSASAAKPAAPRVP 385
A+ ++ + + A P
Sbjct: 227 APATPDGAAPLPTDQAGVSTPAADP 251
Score = 32.3 bits (74), Expect = 0.92
Identities = 16/63 (25%), Positives = 23/63 (36%)
Query: 373 SASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATT 432
SA ++ + VPL T+ T A TT + ATA PA + A
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVV 210
Query: 433 TST 435
+
Sbjct: 211 APS 213
Score = 32.3 bits (74), Expect = 0.99
Identities = 19/91 (20%), Positives = 29/91 (31%)
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
P + P T PV T T S+T + + A A P V + + AT
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222
Query: 398 KPATAKPSTTSKPTTASKPATATRPATTTSK 428
A + + A + PA +
Sbjct: 223 PAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253
>gnl|CDD|220840 pfam10667, DUF2486, Protein of unknown function (DUF2486). This
family is made up of members from various Burkholderia
spp. The function is unknown.
Length = 245
Score = 42.6 bits (100), Expect = 4e-04
Identities = 28/170 (16%), Positives = 47/170 (27%), Gaps = 12/170 (7%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT 306
T A + P P P ++ + P + AS
Sbjct: 2 TQANDSSIPTLTDVLVPGHPVPARSSSADAAGPHDDAAEPVLTDQIVPGAEQAASAAPVH 61
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
A +A P+ A +P A P A A P P V +A +
Sbjct: 62 AAREATADPEFVAVEPVPTPHVPAVALPGDTDAPAEPGAAP---HVVAERAAAMQAPLPS 118
Query: 367 S---------SSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTT 407
+ + T+A A A P + ++ A + A + +
Sbjct: 119 ALAADDPQAPPAGATAADAGDAAPDATPPAAGDASPPAAAQAAASAAAAL 168
Score = 30.7 bits (69), Expect = 2.8
Identities = 36/160 (22%), Positives = 44/160 (27%), Gaps = 19/160 (11%)
Query: 183 SAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTT 242
SA+ + D A V +V A A+ A A D A +P P
Sbjct: 28 SADAAGPHDDAAEPVLTDQIVPGAEQAASAAPVHAAREATADPEFVAVEPVPTP------ 81
Query: 243 TKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAST 302
A P + A+P P AP P P A
Sbjct: 82 -HVPAVALPGDTDAP------AEPGAAPHVVAERAAAMQAP-----LPSALAADDPQAPP 129
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
TA AAP + P A P AA A A
Sbjct: 130 AGATAADAGDAAP-DATPPAAGDASPPAAAQAAASAAAAL 168
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 43.2 bits (102), Expect = 5e-04
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 216 KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPA 275
K +P A +P++ A + ++++ AA+P+ T
Sbjct: 376 KQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAV 435
Query: 276 P-KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
P P + AP++ A +K S ++ ST+ + +
Sbjct: 436 PVNPPSTAPQAVRPAQFKEE-KKIPVSKVSSLGPSTLRPIQEKAE 479
Score = 43.2 bits (102), Expect = 6e-04
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 218 TAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKP-APKPATKPAP 276
T G K KP+ +A A SP ++ A+P AP+ AT+PA
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG 422
Query: 277 KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAP 320
P T + PA V ST + K
Sbjct: 423 TPPTV------SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 8/110 (7%)
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
P +P PA P +A + S + SS+ SA + A
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQP------SAAAAASPSPSQSSAAAQPSAPQSATQPAG 422
Query: 386 LSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
S PA P +T+ + + + ST
Sbjct: 423 TPPTVSVDPPA--AVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPST 470
Score = 40.9 bits (96), Expect = 0.003
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 7/129 (5%)
Query: 249 AKPAISPVK--KTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT 306
A P + K T AP+P+ A P+ + + P +P +
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP---P 425
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
S A P P AP+ PA + T RP+ +
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQA--VRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATG 483
Query: 367 SSSSVTSAS 375
+ + +
Sbjct: 484 NIKEAPTGT 492
Score = 37.8 bits (88), Expect = 0.022
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK--KPVAAP 332
A +PA +P A+ + S SAA +PSAP+ A P
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428
Query: 333 APKPRPATAAP---APKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRV 384
P P AP+ + K S+ SS ++ + A +
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV--SKVSSLGPSTLRPIQEKAEQA 481
Score = 36.3 bits (84), Expect = 0.075
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 195 AKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAIS 254
+ + AAA A A+ + + AA+P++ A T + +
Sbjct: 376 KQHIKPVFTQPAAAPQPSAAAAASPSPS--QSSAAAQPSAPQSATQPAGTPPTVSVDPPA 433
Query: 255 PVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAA 314
V +TA A +PA K + S+ P+++ AT + A
Sbjct: 434 AVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQ-----ATGNIKEA 488
Query: 315 PKPSAPK 321
P + +
Sbjct: 489 PTGTQKE 495
Score = 31.7 bits (72), Expect = 1.8
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 357 VSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
++ T +S KP +Q +A +P+ A + PS + A
Sbjct: 359 LAQLTQKGDDASGGRGPKQHIKPV-----FTQPAAAPQPSAAAAAS-PSPSQSSAAAQPS 412
Query: 417 ATATRPATTTSKPATTTSTDIEDEMNQPFTP 447
A + + P + +N P T
Sbjct: 413 APQSATQPAGTPPTVSVDPPAAVPVNPPSTA 443
Score = 30.9 bits (70), Expect = 3.2
Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 26/143 (18%)
Query: 303 ITKTATSTVSAAPKPSA-----PKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPV 357
K + +AAP+PSA P P+ AP+ A P + PV
Sbjct: 378 HIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPV 437
Query: 358 SATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPA 417
+ +TA P + R + K K +K S+ T
Sbjct: 438 NPPSTA---------------------PQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQE 476
Query: 418 TATRPATTTSKPATTTSTDIEDE 440
A + + T T +I E
Sbjct: 477 KAEQATGNIKEAPTGTQKEIFTE 499
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 43.2 bits (101), Expect = 5e-04
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 302 TITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
T+ A + SA + SA P++ P +PA P T A A+
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSAT----------TTQASA 345
Query: 362 TASRTSSSSVTSASAAKPAAPRVPLSQRTSA-AKPATKPATAKPSTTSKPTTASKPATAT 420
A SS+ V + P +P ++ + +P + T + ST + +TA+ P T+
Sbjct: 346 VA--LSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSL 403
Query: 421 RPATTTSKPATTTSTD 436
A ++ P + TS D
Sbjct: 404 PAAPASNIPVSPTSRD 419
Score = 40.1 bits (93), Expect = 0.004
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 8/138 (5%)
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPV-ASTITKTATSTV 311
+ +K+ T P A ++A S+ P PA + V + T T S V
Sbjct: 287 ATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAV 346
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSV 371
+ + P VA PA +P P T S+T + T++
Sbjct: 347 ALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQ------SSTGNITSTANGPT 400
Query: 372 TSASAAKPA-APRVPLSQ 388
TS AA + P P S+
Sbjct: 401 TSLPAAPASNIPVSPTSR 418
Score = 38.2 bits (88), Expect = 0.016
Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 9/139 (6%)
Query: 207 AAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAIS-------PVKKT 259
A+ ++KAT K+ D G A P + T + T + AI V
Sbjct: 277 LDNRALDIEKATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQ 336
Query: 260 --ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP 317
TT A + P T A +P ++ ST +ST +
Sbjct: 337 SATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTA 396
Query: 318 SAPKPAAPKKPVAAPAPKP 336
+ P + P P + P
Sbjct: 397 NGPTTSLPAAPASNIPVSP 415
Score = 37.4 bits (86), Expect = 0.026
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 327 KPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPL 386
PVAA P ++ A P + + P A +S T+ S+ T+ ++A + L
Sbjct: 299 VPVAAVTPSSAVTQSS-AITPSSAAI---PSPAVIPSSVTTQSATTTQASAVALSSAGVL 354
Query: 387 SQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFT 446
+ PA + +P + ++ ++ T++ TTS N P +
Sbjct: 355 PSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVS 414
Query: 447 P 447
P
Sbjct: 415 P 415
Score = 35.8 bits (82), Expect = 0.076
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 154 TDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVA 213
T T A + + + SS + +A A ++
Sbjct: 295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSS--VTTQSATTTQASAVALSSAG 352
Query: 214 VKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK 273
V + PAA+P + +TT+T ++ I+ TT+ PA PA+
Sbjct: 353 VLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTAN-GPTTSLPA-APASN 410
Query: 274 PAPKPTT 280
PT+
Sbjct: 411 IPVSPTS 417
Score = 35.1 bits (80), Expect = 0.14
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 246 TTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITK 305
T P + +A T + A P++AA S P+ V A+T
Sbjct: 295 THGTVPVAAVTPSSAVTQSS---------AITPSSAAIPSPAVI--PSSVTTQSATTTQA 343
Query: 306 TATSTVSAAPKPS-APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
+A + SA PS P P A P + + + G + TT+
Sbjct: 344 SAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTS 402
Score = 35.1 bits (80), Expect = 0.17
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPA-PKPATKPAP-----KPTTAAPKSTTTAPKPA 293
T T A P+ + + +A T + A P PA P+ TT A ++
Sbjct: 295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVL 354
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
P + T+ A V+ P+P + + P T+ PA
Sbjct: 355 PSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPA 405
Score = 33.5 bits (76), Expect = 0.41
Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 12/125 (9%)
Query: 199 GALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKP--ASKPLAKTTTTKTTTAAKPAISPV 256
G + V A +AV A P PA P + A TT + + P
Sbjct: 297 GTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPS 356
Query: 257 KKT-ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
T T A PA +P +T + ++T + P T+++ AAP
Sbjct: 357 DVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGP---------TTSLPAAP 407
Query: 316 KPSAP 320
+ P
Sbjct: 408 ASNIP 412
Score = 32.8 bits (74), Expect = 0.69
Identities = 20/117 (17%), Positives = 39/117 (33%)
Query: 181 VESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKT 240
S + A + A + A ++V + AT + + +A +
Sbjct: 302 AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLP 361
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
T A + P + T T + + T A PTT+ P + + +P +
Sbjct: 362 GTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSR 418
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 43.5 bits (102), Expect = 5e-04
Identities = 72/344 (20%), Positives = 95/344 (27%), Gaps = 44/344 (12%)
Query: 98 TPEVSEPKEEVLDDLV--SVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTD 155
T E EP EV D V +P+ V+ A E+ + I E EA P
Sbjct: 29 TVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDTVEVGGVLAIIGEPGEAGSEPAP 88
Query: 156 ETNSETAEKETPLSEVPVIPQEAQTVESAEESTASS--------DLAAKVA-GALVVGAA 206
A E P +A ++ S +L V G +
Sbjct: 89 AAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELGESVTEGTVTSWLK 148
Query: 207 AAGAAVAVKKATAAKKTDK-----PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTAT 261
A G V V + TDK P P A + A T I
Sbjct: 149 AVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTVLAIIGDANAAPA 208
Query: 262 TTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPK 321
A+ ++ +P A P P A K +AP
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAP--------------APAKTAAPA 254
Query: 322 PAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAA 381
AAP P P A GV V T R V +A+ A A
Sbjct: 255 AAAPVSS-GDSGPYVTPLVRKLAKD---KGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEA 310
Query: 382 PRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATT 425
A A A A P+ + ++P TA TT
Sbjct: 311 ----------RAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTT 344
Score = 40.8 bits (95), Expect = 0.003
Identities = 59/296 (19%), Positives = 90/296 (30%), Gaps = 27/296 (9%)
Query: 101 VSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSE 160
+ EP E + + P+ P +A +P+PA + + T+ E
Sbjct: 76 IGEPGEAGSEP--APAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPE 133
Query: 161 TAEKETPLSEVPVIPQEAQTVESAE------ESTASSDLAAKVAGALVVGAAAAGAAVAV 214
E T + + TVE E +++ + VAG L+ A V V
Sbjct: 134 LGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEV 193
Query: 215 KKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKP 274
A PA + A + + + P + A K
Sbjct: 194 GTVLAIIGDANAAPAEPAEEEAPAPS---EAGSEPAPDPAARAPHAAPDPPAPAPAPAKT 250
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVA-------STITKTAT-------STVSAAPKPSAP 320
A A S + P P+ + +A ST+ T ++AA
Sbjct: 251 AAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEA 310
Query: 321 K--PAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSA 374
+ AAP A AP A P L K TA +T S TSA
Sbjct: 311 RAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQTSA 366
>gnl|CDD|219392 pfam07382, HC2, Histone H1-like nucleoprotein HC2. This family
contains the bacterial histone H1-like nucleoprotein HC2
(approximately 200 residues long), which seems to be
found mostly in Chlamydia. HC2 functions in DNA
condensation, although it has been suggested that it
also has other roles.
Length = 187
Score = 41.7 bits (97), Expect = 5e-04
Identities = 37/158 (23%), Positives = 54/158 (34%), Gaps = 4/158 (2%)
Query: 183 SAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTT 242
+A+++ A K A V A A +K A K PAAK A+K
Sbjct: 14 AAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKV 73
Query: 243 TKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAST 302
AK A++ K TA A A K P + K A RKP A
Sbjct: 74 VAKKPVAKKAVAK-KATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAK- 131
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPAT 340
K ++ + AA K+ ++ A + +
Sbjct: 132 --KAVAKKAASTCHKNHKHTAACKRVASSSATRAACGS 167
Score = 40.5 bits (94), Expect = 0.001
Identities = 41/170 (24%), Positives = 54/170 (31%), Gaps = 1/170 (0%)
Query: 211 AVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
A KK ++ K K KPA+K A T AAK + T A P
Sbjct: 2 LGAQKKRSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAA 61
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVA 330
A K + K + + A K +A KPAA KK VA
Sbjct: 62 KKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAA-KKAVA 120
Query: 331 APAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPA 380
A +PA K + K SSS+ +A +K
Sbjct: 121 KKAVARKPAAKKAVAKKAASTCHKNHKHTAACKRVASSSATRAACGSKSR 170
Score = 40.1 bits (93), Expect = 0.001
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 11/184 (5%)
Query: 214 VKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK 273
+K ++KKT A + KP AK K T K A K A T A K
Sbjct: 4 AQKKRSSKKTAAKKAAVR---KPAAKKAAAKKTVVRKVAAK--KPAARKTVAKKTVAAKK 58
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
PA K + K +K VA K AT+ AA K A K A K PA
Sbjct: 59 PAAKKAAKKAVAKKVVAKKPVAKKAVA----KKATAKKVAAKKVVAKKTVAKKAAAKKPA 114
Query: 334 PKPRPATAAPAPKPLTNGVTKRPVSAT--TTASRTSSSSVTSASAAKPAAPRVPLSQRTS 391
K A A A KP + ++T T++ ++S+A AA +
Sbjct: 115 AKKAVAKKAVARKPAAKKAVAKKAASTCHKNHKHTAACKRVASSSATRAACGSKSRVNPA 174
Query: 392 AAKP 395
Sbjct: 175 HGWR 178
Score = 38.6 bits (89), Expect = 0.005
Identities = 40/162 (24%), Positives = 57/162 (35%), Gaps = 4/162 (2%)
Query: 269 KPATKPAPKPTTA-APKSTTTAPKPAPVRKPVA--STITKTATSTVSAAPKPSAPKPAAP 325
+ + K A K P + A K VRK A KT AA KP+A K A
Sbjct: 8 RSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKK 67
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS-SVTSASAAKPAAPRV 384
A KP A K+ V+ T A + ++ + AK A R
Sbjct: 68 AVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARK 127
Query: 385 PLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTT 426
P +++ A K A+ T + AS AT + +
Sbjct: 128 PAAKKAVAKKAASTCHKNHKHTAACKRVASSSATRAACGSKS 169
Score = 35.9 bits (82), Expect = 0.036
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 283 PKSTTTAPKPAPVRKPVA------STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
S TA K A VRKP A T+ + + AA K A K A KKP A A K
Sbjct: 8 RSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKK 67
Query: 337 RPATAAPAPKPLT-NGVTKRPVSATTTASRTSS-SSVTSASAAKPAAPRVPLSQRTSAAK 394
A A KP+ V K+ + A + + +V +AAK A + ++++ A K
Sbjct: 68 AVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARK 127
Query: 395 PATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
PA K A AK + ++ A R A++++
Sbjct: 128 PAAKKAVAKKAASTCHKNHKHTAACKRVASSSAT 161
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 42.9 bits (101), Expect = 6e-04
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 17/156 (10%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAI-----SPVKKTATTTAKPAPKPATKPAPKPTTAA 282
P K +K K +K +T I + K + + P+ +
Sbjct: 9 PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKS 68
Query: 283 PKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
K T ++ + + K+A ST S+ PK AP + ++ P P +
Sbjct: 69 SKPTESSAASSEEKPAKPR---KSAESTRSSHPKSKAPSTESEEEEEPEETPDPIAS--- 122
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
+ + S T+TA+ T+S++V A A
Sbjct: 123 -----IGGWWSLWG-SITSTATSTASAAVKQAEQAV 152
Score = 37.8 bits (88), Expect = 0.023
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 219 AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKP 278
AK KP A++P + K ++ T ++A + K + AP
Sbjct: 46 KAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPST 105
Query: 279 TTAAPKSTTTAPKPAPVRK---PVASTITKTATSTVSAAPK 316
+ + P P + +IT TATST SAA K
Sbjct: 106 ESEEEEEPEETPDPIASIGGWWSLWGSITSTATSTASAAVK 146
Score = 37.5 bits (87), Expect = 0.028
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 23/129 (17%)
Query: 338 PATAAPAPKPLTNGVTKRPVSATT---------TASRTSSSSVTSASAAKPAAPRVPLSQ 388
P AP KP +K S + A++P PR P +
Sbjct: 9 PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNP--K 66
Query: 389 RTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPE 448
++S ++ S+ KP K A +TR + SK +T S + E+ PE
Sbjct: 67 KSSKPTE-----SSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEE-------PE 114
Query: 449 ELEAAIKSG 457
E I S
Sbjct: 115 ETPDPIASI 123
>gnl|CDD|187703 cd09279, RNase_HI_archaeal_like, RNAse HI family that includes
Archaeal RNase HI. Ribonuclease H (RNase H) is
classified into two evolutionarily unrelated families,
type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and
viral RNase H) and type 2 (prokaryotic RNase HII and
HIII, and eukaryotic RNase H2). RNase H is an
endonuclease that cleaves the RNA strand of an RNA/DNA
hybrid in a sequence non-specific manner. RNase H is
involved in DNA replication, repair and transcription.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. One of the important
functions of RNase H is to remove Okazaki fragments
during DNA replication. Most archaeal genomes contain
only type 2 RNase H (RNase HII); however, a few contain
RNase HI as well. Although archaeal RNase HI sequences
conserve the DEDD active-site motif, they lack other
common features important for catalytic function, such
as the basic protrusion region. Archaeal RNase HI
homologs are more closely related to retroviral RNase HI
than bacterial and eukaryotic type I RNase H in
enzymatic properties.
Length = 128
Score = 40.2 bits (95), Expect = 7e-04
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 676 ICIYTD-ASKKNEK---VGAAWFCPTYKS-KACFKLHPATSTYTAEVIGIWEALKYSASL 730
+Y D AS+ N G P + + L + AE + L+ + L
Sbjct: 1 WTLYFDGASRGNPGPAGAGIVIKSPDGEVLEQSIPLGFPATNNEAEYEALIAGLELALEL 60
Query: 731 KNNEILILTDSKSACQKLSKNCLNTTPTHLELEILSSYKHLQNTCKTVKLAWIKGHEGIK 790
++ I DS+ ++ L + L + V++ WI E
Sbjct: 61 GIKKLEIYGDSQLVVNQIQGEYEVKNERLAPY--LEEARELLKKFEEVEIKWIPREE--- 115
Query: 791 GNVEVDRLAK 800
N E D LA
Sbjct: 116 -NKEADALAN 124
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 42.8 bits (100), Expect = 8e-04
Identities = 40/205 (19%), Positives = 68/205 (33%), Gaps = 3/205 (1%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
GP + A + T + A+ P + + A+PAP+P +A
Sbjct: 177 GPPSIQVPPGAALAPSAPPPTPSAQAVPP--QGSPIAAQPAPQPQQPSPLSLISAPSLHP 234
Query: 287 TTAPKPAPVRKPV-ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
P P P +P AS + + S P+ S P P P ++ P
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPP 294
Query: 346 KPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPS 405
+P ++ P + ++ S + S SA +P P + + P KP P
Sbjct: 295 QPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPI 354
Query: 406 TTSKPTTASKPATATRPATTTSKPA 430
+ P P+ P+
Sbjct: 355 PQLPNQSHKHPPHLQGPSPFPQMPS 379
Score = 39.3 bits (91), Expect = 0.010
Identities = 40/197 (20%), Positives = 63/197 (31%), Gaps = 4/197 (2%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
P + A + +P ++A +P + PAP P T
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPT 351
Query: 287 TTAPKPAPV--RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
T P+ + P S P P A KP + P+ P P P
Sbjct: 352 TPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQ 411
Query: 345 PKPLTNGVTKRPV-SATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPA-TKPATA 402
+PL + + PV + + + +S+ S + P TS PA P +
Sbjct: 412 SQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSL 471
Query: 403 KPSTTSKPTTASKPATA 419
ST + P AS +
Sbjct: 472 PTSTPAAPPRASSGSQP 488
Score = 38.5 bits (89), Expect = 0.015
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 266 PAPKP-ATKPAPKPTTAAPKSTTTAPKPAPVRKPVAS--TITKTATSTVSAAPKPSAPKP 322
PA KP ++ P P +A P P+ P++ A +T++ + A+ P +
Sbjct: 385 PALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLH 444
Query: 323 AAPKKPVAAPAP----KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
+ P + A P P+ T P A++ + S+ +S A
Sbjct: 445 SGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAA---PPRASSGSQPPGSALPSSGGCAG 501
Query: 379 PAAPRVPLSQRTSAAKPATKPATAKP---STTSKPTTASKPATATRPA 423
P P P+ + A +P + P S + +PT + P+ A++ A
Sbjct: 502 PGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHASQSA 549
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 42.7 bits (100), Expect = 8e-04
Identities = 48/244 (19%), Positives = 75/244 (30%), Gaps = 43/244 (17%)
Query: 242 TTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAS 301
K T A+ A+ + T +P P KP P+S TA + P
Sbjct: 394 AGKLTERAREALEKASEPTYGTPRP-------PVEKPRPEVPQSLETATSHGSAQVPEPP 446
Query: 302 TITKTATSTV----SAAPKPSAPKPAAPKKPVAA------------PAPKPRPATAAPAP 345
+ + S AP P A P P + + PA P PA A P
Sbjct: 447 PVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIV 506
Query: 346 KPLTNGVTKRPVSATTTAS----RTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT---- 397
+P +++ P A V + + +P P PL + +
Sbjct: 507 RPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRV 566
Query: 398 ----KPATAKPSTTSKPTTAS--------KPATATRPATTTSKPATTTSTDIEDEMNQPF 445
+PA P+ P+ S + A+ +P T + M P
Sbjct: 567 RERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPL 626
Query: 446 TPEE 449
PE+
Sbjct: 627 EPEQ 630
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 42.3 bits (99), Expect = 9e-04
Identities = 40/179 (22%), Positives = 55/179 (30%), Gaps = 20/179 (11%)
Query: 256 VKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
KTA TT+K P P P T +PA T TA +S+
Sbjct: 167 EPKTAVTTSKTTSWPTEVSHP----TYPSQVTPQSQPATQ-----GHQTATANQRLSSTE 217
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSAS 375
P P +P P+ P+ P T +TT + + +
Sbjct: 218 PVGTQGTTTSSNP--EPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPP 275
Query: 376 AAKPAAPRVPLSQRTSAAKP---ATKPATAKPSTT----SKPTTASKPATATRPATTTS 427
A + R P S T T T +P+ T S P +S P P T
Sbjct: 276 A--TSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNL 332
Score = 37.3 bits (86), Expect = 0.027
Identities = 29/157 (18%), Positives = 45/157 (28%), Gaps = 14/157 (8%)
Query: 216 KATAAKKTDKPGPAAKPA--------SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPA 267
T +K T P + P S+P + T T + PV TTT+
Sbjct: 171 AVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNP 230
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
P P+ P + P + + + T P S + +P
Sbjct: 231 EPQTE---PPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRR--SPHS 285
Query: 328 PVAAPAPKPRPATAAPAPKPLTN-GVTKRPVSATTTA 363
P R T P P+P P ++
Sbjct: 286 TATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPG 322
Score = 30.8 bits (69), Expect = 3.6
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 17/125 (13%)
Query: 354 KRPVSATTTASRTSS----------SSVTSASAAKPAAPRVPLSQRTSAAKPA------T 397
K P +A TT+ TS S VT S + + + ++ T
Sbjct: 166 KEPKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTT 225
Query: 398 KPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSG 457
+ +P T P+ P+ + + +T+ +T+ D ++ + TP
Sbjct: 226 TSSNPEPQTEPPPSQ-RGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPH 284
Query: 458 LITTP 462
TP
Sbjct: 285 STATP 289
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 42.5 bits (100), Expect = 9e-04
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAST-ITK 305
A+ A PV K A AP+ A P P A ++ P P P P +
Sbjct: 38 LVAEGAAGPVAKAAEQM--AAPEAAEAA-PLPAAAESIASPEVPPPVP---PAPAQEGEA 91
Query: 306 TATSTVSAAPKPS-APKPAAPKKPVAAPAP 334
A SA P PS AP PA P +P A P
Sbjct: 92 PAAEQPSAVPAPSAAPAPAEPVEPSLAANP 121
Score = 42.1 bits (99), Expect = 0.001
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
+ A + A A P+ + A+ V P+ +
Sbjct: 33 RELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQE-GEA 91
Query: 327 KPVAAPAPKPRPATAAPAPKP 347
P+ P P+ AAPAP
Sbjct: 92 PAAEQPSAVPAPS-AAPAPAE 111
Score = 37.5 bits (87), Expect = 0.029
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 35/148 (23%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA-APKKPVAAPAP 334
+P + + + I + S + +A A A ++ A A
Sbjct: 2 FEPLIGLVAAAAFEVITSAQLSRIGR-IERELRELRSLVAEGAAGPVAKAAEQMAAPEA- 59
Query: 335 KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAK 394
A AAP P A+A A+P VP + A+
Sbjct: 60 ----AEAAPLP----------------------------AAAESIASPEVPPPVPPAPAQ 87
Query: 395 PATKPATAKPSTTSKPTTASKPATATRP 422
PA +PS P+ A PA P
Sbjct: 88 EGEAPAAEQPSAVPAPSAAPAPAEPVEP 115
Score = 36.0 bits (83), Expect = 0.093
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 191 SDLAAKVAGALVVGAAAA-GAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAA 249
+ A A V +A +++ ++ AA P +K A+ A
Sbjct: 4 PLIGLVAAAAFEVITSAQLSRIGRIERELRELRSLVAEGAAGPVAKA-AEQMAAPEAAEA 62
Query: 250 KPAISPVKKTATTTAKPAPKPA-TKPAPKPTTAAPK---STTTAPKPAPVRKPVA 300
P + + A+ P PA + P P + + AP PA +P
Sbjct: 63 APLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSL 117
>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a
hybrid binding domain (HBD) at the N-terminus.
Ribonuclease H (RNase H) enzymes are divided into two
major families, Type 1 and Type 2, based on amino acid
sequence similarities and biochemical properties. RNase
H is an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner in the
presence of divalent cations. RNase H is involved in
DNA replication, repair and transcription. RNase H is
widely present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD)
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability. Some bacteria
distinguished from other bacterial RNase HI in the
presence of a hybrid binding domain (HBD) at the
N-terminus which is commonly present at the N-termini of
eukaryotic RNase HI. It has been reported that this
domain is required for dimerization and processivity of
RNase HI upon binding to RNA-DNA hybrids.
Length = 133
Score = 39.4 bits (93), Expect = 0.001
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 768 YKHLQNTCKTVKLAWIK--GHEGIKGNVEVDRLAKYAT 803
+ + K +K++++K H G K N D+LAK A
Sbjct: 96 KEFMDKIKKKIKISFVKVKAHSGDKYNELADKLAKKAL 133
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 41.8 bits (98), Expect = 0.001
Identities = 33/223 (14%), Positives = 55/223 (24%), Gaps = 8/223 (3%)
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT-----ATTTAKPA 267
AVK+ +K GPAAK K + K K + KK
Sbjct: 76 AVKRV---EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
PK K P + +P + + + K K P +
Sbjct: 133 PKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Query: 328 PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLS 387
P + K + TS + + + R S
Sbjct: 193 EEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSS 252
Query: 388 QRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPA 430
+ P+ + S+ T +++PA
Sbjct: 253 LKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPA 295
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 41.5 bits (97), Expect = 0.002
Identities = 35/176 (19%), Positives = 51/176 (28%), Gaps = 25/176 (14%)
Query: 173 VIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVA-VKKATAAKKTDKPGPAAK 231
+ EA E AE + A+ AA G + G VA KA A+ TD+ +
Sbjct: 290 YVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESV 349
Query: 232 PASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK 291
+T ++ I + PA A + A + P
Sbjct: 350 VQVADRDGESTPAVEETSEADIEREQPGDLAGQAPA-------AHQVDAEAASAAPEEPA 402
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+ +P P+ AAP PA A A P P
Sbjct: 403 ALASEAHDET--------------EPEVPEKAAPI---PDPAKPDELAVAGPGDDP 441
Score = 36.9 bits (85), Expect = 0.048
Identities = 17/148 (11%), Positives = 38/148 (25%), Gaps = 12/148 (8%)
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP 356
+ + + A ++ ++A P P +P A +
Sbjct: 297 EREPAELAAAAVASAASAVGPVGPGEPN----------QPDDVAEAVKAEVAEVTDEVAA 346
Query: 357 VSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
S A R S+ ++ R + PA + ++ P +
Sbjct: 347 ESVVQVADRDGESTPAVEETSEADIER-EQPGDLAGQAPA-AHQVDAEAASAAPEEPAAL 404
Query: 417 ATATRPATTTSKPATTTSTDIEDEMNQP 444
A+ T P + ++
Sbjct: 405 ASEAHDETEPEVPEKAAPIPDPAKPDEL 432
Score = 35.0 bits (80), Expect = 0.15
Identities = 27/153 (17%), Positives = 43/153 (28%), Gaps = 11/153 (7%)
Query: 128 ANEESPSPAVDLTQDIVEEKEAVVTPT--------DETNSETAEKETPLSEVPVIPQEAQ 179
+E +L V + V P D+ + +++ Q
Sbjct: 292 VDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQ 351
Query: 180 TVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPG-PAAKPASKPLA 238
+ EST + + ++ AG A A + A + P PAA +
Sbjct: 352 VADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDE 411
Query: 239 KTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
A P P K A P PA
Sbjct: 412 TEPEVPEKAAPIP--DPAKPDELAVAGPGDDPA 442
Score = 34.2 bits (78), Expect = 0.26
Identities = 22/154 (14%), Positives = 33/154 (21%), Gaps = 3/154 (1%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A+ A + A P P A K V + +
Sbjct: 291 VVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEV--AEVTDEVAAES 348
Query: 308 TSTVSAAPKPSAPKPAAPKKP-VAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
V+ S P + + P A A + + P AS
Sbjct: 349 VVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEA 408
Query: 367 SSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPA 400
+ P + A P PA
Sbjct: 409 HDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPA 442
Score = 33.8 bits (77), Expect = 0.36
Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 16/155 (10%)
Query: 313 AAPKPSAPKPAA-PKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSV 371
+ +PA VA+ A P +P + A T + S V
Sbjct: 291 VVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVV 350
Query: 372 TSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPAT 431
A + P V + + + + + A PA
Sbjct: 351 QVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPA-------- 402
Query: 432 TTSTDIEDEMNQPFTPEELEAAIKSGLITTPGRDN 466
++ E E K+ I P + +
Sbjct: 403 -------ALASEAHDETEPEVPEKAAPIPDPAKPD 430
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 41.2 bits (97), Expect = 0.002
Identities = 14/79 (17%), Positives = 21/79 (26%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT 288
A++ A + T T A T P KPA A +
Sbjct: 163 ASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPP 222
Query: 289 APKPAPVRKPVASTITKTA 307
A P ++ +A
Sbjct: 223 ATSGKPKSGAASARALSSA 241
Score = 40.8 bits (96), Expect = 0.002
Identities = 44/198 (22%), Positives = 65/198 (32%), Gaps = 17/198 (8%)
Query: 217 ATAAKKTDKPGPAAKPA-SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPA 275
A A K D G ++ + ++ + + +A P T+ A
Sbjct: 73 AGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAA 132
Query: 276 PKPTTAA------PKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
P T P + + A + AS + TST+ AP AP K
Sbjct: 133 PPQTPNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPS--KGAKVP 190
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLS-- 387
A P P KP N +AT +S S +A+ A P S
Sbjct: 191 ATAETHPTPPQKPATKKPAVN----HHKTATVAVPPATSGKPKSGAASARALSSAPASHY 246
Query: 388 --QRTSAAKPATKPATAK 403
Q +SA++ T A AK
Sbjct: 247 TLQLSSASRSDTLNAYAK 264
Score = 39.3 bits (92), Expect = 0.006
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Query: 285 STTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
S ++ + +P S + +A P+ + P +P AAP P
Sbjct: 86 SLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRIEL 145
Query: 345 PKPLTNGVTKRP--VSATTTASRTSSSSVTSASA-AKPAAPRVPLSQRTSAAKPATKPAT 401
P +++ ++++ V+A + ++ ++S++ +A A P+ + + P KPAT
Sbjct: 146 PGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPAT 205
Query: 402 AKPST--TSKPTTASKPATATRPATTTSKPATTTST 435
KP+ T A PAT+ +P + + +S
Sbjct: 206 KKPAVNHHKTATVAVPPATSGKPKSGAASARALSSA 241
Score = 36.2 bits (84), Expect = 0.059
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 203 VGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATT 262
V AA+ A A T P AK + T + KPA++
Sbjct: 160 VNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNH-----HK 214
Query: 263 TAKPAPKPATKPAPKPTTAAPKSTTTAP 290
TA A PAT PK A+ ++ ++AP
Sbjct: 215 TATVAVPPATSGKPKSGAASARALSSAP 242
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 41.5 bits (97), Expect = 0.002
Identities = 27/110 (24%), Positives = 40/110 (36%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT 287
A+ PL + + + A P +P A P+P + P T STT
Sbjct: 168 AEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTT 227
Query: 288 TAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
T+P + P + A +T A P+ P P + P A P P
Sbjct: 228 TSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE 277
Score = 36.5 bits (84), Expect = 0.057
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 376 AAKPAAPRV-PLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTS 434
A +APR+ P A T TA P TT P+T + P + T PA +T+ A
Sbjct: 189 ALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAG 248
Query: 435 TDIEDE 440
T E E
Sbjct: 249 TTPEAE 254
Score = 34.9 bits (80), Expect = 0.15
Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 7/107 (6%)
Query: 283 PKSTTTAPKPAP-------VRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
P +AP+ P +P T T+ + A
Sbjct: 188 PALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQA 247
Query: 336 PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
A P P T G + P + T A S +T + A P
Sbjct: 248 GTTPEAEGTPAPPTPGGGEAPPANATPAPEASRYELTVTQIIQIAIP 294
Score = 33.0 bits (75), Expect = 0.60
Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 1/89 (1%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P + TT +T P + + +TT A P + P P
Sbjct: 205 PATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGG 264
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAA 314
P A P AS T T + A
Sbjct: 265 GEAPPANA-TPAPEASRYELTVTQIIQIA 292
Score = 30.3 bits (68), Expect = 4.3
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 251 PAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATST 310
PA T + + P P+T P+T P +TT P P A T
Sbjct: 205 PATPRPTPRTTASPETTPTPST-TTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPG 263
Query: 311 V------SAAPKPSAPK 321
+A P P A +
Sbjct: 264 GGEAPPANATPAPEASR 280
Score = 29.5 bits (66), Expect = 8.6
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 322 PAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAA 381
PA P+ A P T + T P +TT A+ + ++ + P
Sbjct: 205 PATPRPTPRTTAS---PETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPT 261
Query: 382 PRVPLSQRTSAAKPA 396
P + +A
Sbjct: 262 PGGGEAPPANATPAP 276
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 41.6 bits (97), Expect = 0.002
Identities = 51/249 (20%), Positives = 75/249 (30%), Gaps = 17/249 (6%)
Query: 220 AKKTDKPGPAAKPAS-KPLAKTTTTKTTTAAKPAISPVKKTATTTAKPA-PKPATKPAPK 277
+K++D+P KP K KP+ K T + KP PK P
Sbjct: 537 SKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPS-----KIPTLSKKPEFPKDPKHPKDP 591
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
PK +A +P + P + S S +P P++P + P
Sbjct: 592 EEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSS-----PE 646
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
K + +P + + +A+ +K V L + + T
Sbjct: 647 RPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKET 706
Query: 398 KPAT-AKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKS 456
P T P TT +P P P P DIE PEE
Sbjct: 707 LPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFT----PPEEERTFFHE 762
Query: 457 GLITTPGRD 465
TP D
Sbjct: 763 TPADTPLPD 771
Score = 35.1 bits (80), Expect = 0.16
Identities = 49/248 (19%), Positives = 76/248 (30%), Gaps = 19/248 (7%)
Query: 215 KKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAK---PAPKPA 271
+ + KPGPA + KP T +K K P K A +P
Sbjct: 550 GETKEGEVGKKPGPAKE--HKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPT 607
Query: 272 TKPAPK--------PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
+PK + P+S + +P P ++P + + S P P +PKP
Sbjct: 608 RPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKP-PKSPKP- 665
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
P P AA K V + + T + +P P+
Sbjct: 666 -PFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPK 724
Query: 384 VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR--PATTTSKPATTTSTDIEDEM 441
+P + +P P +P T + T PA T ED
Sbjct: 725 LPRDE-EFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIH 783
Query: 442 NQPFTPEE 449
+ P+E
Sbjct: 784 AETGEPDE 791
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24).
This family consists of several MGC-24 (or Cd164
antigen) proteins from eukaryotic organisms.
MGC-24/CD164 is a sialomucin expressed in many normal
and cancerous tissues. In humans, soluble and
transmembrane forms of MGC-24 are produced by
alternative splicing.
Length = 187
Score = 40.0 bits (93), Expect = 0.002
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPK-STTTAPKPAPVRKP 298
TT + + +TAKP P+ + T+ PK +TT P P RK
Sbjct: 98 GCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTTSHHHVTSEPKTNTTVTPTSQPDRKS 157
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 41.1 bits (97), Expect = 0.002
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 257 KKTATTTAKPAPKPA-TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
+A+ TAK P P + P P PT P+ T TAP P P P T T+ +++ + P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPP--PPPPTATQASSNAPAQIP 571
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTN 350
S+P P P++P +P P A K L +
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSPEEIDKAAKNLAD 606
Score = 36.9 bits (86), Expect = 0.044
Identities = 15/79 (18%), Positives = 24/79 (30%)
Query: 249 AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
IS + + + P +APK+ A P+P + I A
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 309 STVSAAPKPSAPKPAAPKK 327
T + P+ A P
Sbjct: 421 PTEPSPTPPANAANAPPSL 439
Score = 35.7 bits (83), Expect = 0.096
Identities = 17/78 (21%), Positives = 21/78 (26%)
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAP 283
AS P T + P KT P+P PA P P A P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421
Query: 284 KSTTTAPKPAPVRKPVAS 301
+ P P +
Sbjct: 422 TEPSPTPPANAANAPPSL 439
Score = 34.6 bits (80), Expect = 0.25
Identities = 14/74 (18%), Positives = 19/74 (25%)
Query: 263 TAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKP 322
+ P P AP K A+T + P P+ P
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423
Query: 323 AAPKKPVAAPAPKP 336
+P P A P
Sbjct: 424 PSPTPPANAANAPP 437
Score = 33.4 bits (77), Expect = 0.53
Identities = 13/65 (20%), Positives = 17/65 (26%)
Query: 281 AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPAT 340
+ + A AP A + +APK P A P P PA
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 341 AAPAP 345
Sbjct: 421 PTEPS 425
Score = 33.4 bits (77), Expect = 0.62
Identities = 16/72 (22%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
A P P P P + T A +P PA P+ PA
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQ---AATTPSPPPAKASPPIPVPA 419
Query: 334 PKPRPATAAPAP 345
P+ PA
Sbjct: 420 EPTEPSPTPPAN 431
Score = 33.0 bits (76), Expect = 0.74
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 214 VKKATAAKKTDKPGPAAKPASKPLAKT---TTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
+ +A+ P P K P T T P P T ++ PA P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571
Query: 271 ATKPAPKPTTAAPKSTTTAPKP 292
A P P P + T
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSS 593
Score = 31.9 bits (73), Expect = 1.6
Identities = 17/78 (21%), Positives = 19/78 (24%)
Query: 233 ASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKP 292
+ A T K P P T P P PT S A P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571
Query: 293 APVRKPVASTITKTATST 310
A P T + T
Sbjct: 572 ADSSPPPPIPEEPTPSPT 589
Score = 31.1 bits (71), Expect = 2.9
Identities = 17/71 (23%), Positives = 24/71 (33%)
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSV 371
++ + P P P A P P+P AP P P T S+ A + SS
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576
Query: 372 TSASAAKPAAP 382
+P
Sbjct: 577 PPPIPEEPTPS 587
Score = 30.3 bits (69), Expect = 4.7
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSA 359
S + + A AP P+ P P+ APK + A P+P P PV A
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPP-AKASPPIPVPA 419
Query: 360 TTTASRTSSSSVTSASAAKPAAP 382
T S T + A A P
Sbjct: 420 EPT-----EPSPTPPANAANAPP 437
Score = 30.3 bits (69), Expect = 4.8
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSA--AKPATKPATAKPSTTSKPTTASKPATAT 420
S S +++ A P P + P TK A PS + P A
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 421 RPATTTSKPATTT 433
+ + PA
Sbjct: 421 PTEPSPTPPANAA 433
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 40.7 bits (95), Expect = 0.002
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 235 KPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA- 293
K TT K TT K P K ATT+ + A T A + K
Sbjct: 1 MAETKKTTKKKTTEEK---KPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVK 57
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
K V KT + + K + K A +
Sbjct: 58 TTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAE 91
Score = 35.7 bits (82), Expect = 0.085
Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
KK T K T++ PAAK A+ T KT K K
Sbjct: 2 AETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTST-----KAAKKAAKVKKTKSV 56
Query: 272 TKPAPKPTTAAPKSTTTAPKPAP---VRKPVASTITKTAT 308
K T K+ + + V+K S A+
Sbjct: 57 KTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
Score = 34.9 bits (80), Expect = 0.12
Identities = 16/106 (15%), Positives = 24/106 (22%), Gaps = 6/106 (5%)
Query: 257 KKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK 316
K T T + A K TA K T +K TK+ +T
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKV-- 63
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTT 362
K + A + + T+
Sbjct: 64 ----TVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 32.2 bits (73), Expect = 1.0
Identities = 25/106 (23%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 269 KPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA-PKPAAPKK 327
TK K T K A K A K A T T++ AA K + K + K
Sbjct: 1 MAETKKTTKKKTTEEK--KPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKT 58
Query: 328 PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTS 373
K + V K VSA + TS
Sbjct: 59 TTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTS 104
Score = 29.5 bits (66), Expect = 6.5
Identities = 12/87 (13%), Positives = 24/87 (27%)
Query: 390 TSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEE 449
A T K + T+ A K A + + + T + E + + +
Sbjct: 21 KKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAK 80
Query: 450 LEAAIKSGLITTPGRDNIHYPMIENLP 476
++ N + LP
Sbjct: 81 KTVKKEAVSAEVFEASNKLFKNTSKLP 107
>gnl|CDD|205634 pfam13456, RVT_3, Reverse transcriptase-like. This domain is found
in plants and appears to be part of a retrotransposon.
Length = 88
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 714 TAEVIGIWEALKYSASLKNNEILILTDSKSACQKLSKNCLNTTPTHLELEILSSYKHLQN 773
AE + E L+ + L +++ +DS+ Q++ E S L
Sbjct: 4 EAEAEALLEGLQLALELGIRRLIVESDSQLVVQQIQGEY----------EARSRLAALLR 53
Query: 774 TCKTVKLAWIKGHEGI-------KGNVEVDRLAKYA 802
+ +K + + + N D LAK A
Sbjct: 54 EIR----KLLKKFDSVSVSHVPRECNRVADALAKLA 85
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 40.6 bits (95), Expect = 0.003
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 1/116 (0%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT 287
P P A T +P+ P K + K T+ K TT
Sbjct: 140 GVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGK 199
Query: 288 TAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
T+ K A +++ + +S K K A + V + +
Sbjct: 200 TSVKAASLKRNPPKK-SNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVI 254
Score = 32.5 bits (74), Expect = 0.88
Identities = 16/119 (13%), Positives = 27/119 (22%)
Query: 322 PAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAA 381
P P A +P KRP S + + V SA + +
Sbjct: 129 PITNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTS 188
Query: 382 PRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDE 440
+ P S ++ +T + E+E
Sbjct: 189 KETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEE 247
Score = 31.3 bits (71), Expect = 2.3
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 3/135 (2%)
Query: 206 AAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAK 265
A AA K TA K P S + + KT +K + K T+ K
Sbjct: 145 PVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTE-KTEGKTSVK 203
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA--TSTVSAAPKPSAPKPA 323
A P ++ T K ++ ++ + + + +P
Sbjct: 204 AASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPT 263
Query: 324 APKKPVAAPAPKPRP 338
+ PKP
Sbjct: 264 GLDEDEDEDEPKPSG 278
Score = 31.0 bits (70), Expect = 3.1
Identities = 30/181 (16%), Positives = 50/181 (27%), Gaps = 14/181 (7%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A P +P K T P PA PA KPT A P KP S ++
Sbjct: 126 QAGPITNPNVKRRTGVGLPPVAPAASPALKPT---------ANGKRPSSKPPKSIMSPEV 176
Query: 308 TSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTS 367
+ + ++ + K P + + K+ S
Sbjct: 177 KVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
Query: 368 SSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTS 427
S+V S + V L + A + +P + + + +
Sbjct: 237 ESTVKEESEEESGKRDVILE-----DESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKE 291
Query: 428 K 428
K
Sbjct: 292 K 292
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 40.8 bits (95), Expect = 0.003
Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 24/198 (12%)
Query: 293 APVRKPVASTITKTATSTVSAAP----KPSAPKPAA---PKKPVAAPAPKPRPATAAPAP 345
AP+ +PVA T + AAP + P + P +P A P P P T P
Sbjct: 314 APITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVI 373
Query: 346 KPLTNGVTKRPVSATTTAS--------------RTSSSSVTSASAAKPAAPRVPLSQRTS 391
P G ++ A + ++ A A +Q+
Sbjct: 374 APAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPY 433
Query: 392 AAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELE 451
A +P + + P + + T +PA + + + E E
Sbjct: 434 YAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE 493
Query: 452 AAIKSGLITTPGRDNIHY 469
++ T P R ++Y
Sbjct: 494 PVVEE---TKPARPPLYY 508
Score = 40.1 bits (93), Expect = 0.006
Identities = 55/275 (20%), Positives = 84/275 (30%), Gaps = 24/275 (8%)
Query: 181 VESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGP-------AAKPA 233
V A +T ++ A + A V + T A + PGP A P
Sbjct: 320 VAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQP-VPGPQTGEPVIAPAPE 378
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
P +P PV+ A A +PA +P P P P A
Sbjct: 379 GYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQ---PYYA 435
Query: 294 P-VRKPVASTITKTATSTVSAAPKPSA------PKPAAPKKPVAAPAPKPRPATAAPAPK 346
P +PVA + + AP+ + +PAA + P P + P P
Sbjct: 436 PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV 495
Query: 347 PLTNGVTKRPVSATTTASRTSSSSVTSASA-----AKPAAPRVPLSQRTSAAKPATKPAT 401
+ P+ + +A +P P+ A A P
Sbjct: 496 VEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPV 555
Query: 402 AKPSTTSKPTTASKPAT-ATRPATTTSKPATTTST 435
+ S + K AT AT A T + P + +
Sbjct: 556 EAAAAVSPLASGVKKATLATGAAATVAAPVFSLAN 590
Score = 37.8 bits (87), Expect = 0.027
Identities = 59/326 (18%), Positives = 94/326 (28%), Gaps = 39/326 (11%)
Query: 92 SAHTEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVV 151
+A T T + P E V + P + DV P Q P P + E V+
Sbjct: 324 AAATTATQSWAAPVEPVTQ---TPPVASVDVPPAQPTVAWQPVPGP-------QTGEPVI 373
Query: 152 TPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAA 211
P E P Q AQ E + A A
Sbjct: 374 APAPEG-------------YPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPY 420
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
A A++ +P + + ++T A + + A+
Sbjct: 421 YAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQ 480
Query: 272 TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA 331
+P + P+ KPA R P+ V + AA +P+
Sbjct: 481 PQPVEQQPVVEPEPVVEETKPA--RPPL------YYFEEVEEKRAREREQLAAWYQPIPE 532
Query: 332 PAPKPRP--ATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
P +P P ++ V + + ++ T A AA AAP L+
Sbjct: 533 PVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGA-AATVAAPVFSLAN- 590
Query: 390 TSAAKPATK----PATAKPSTTSKPT 411
+ +P K P +P PT
Sbjct: 591 SGGPRPQVKEGIGPQLPRPKRIRVPT 616
Score = 37.8 bits (87), Expect = 0.033
Identities = 43/212 (20%), Positives = 64/212 (30%), Gaps = 33/212 (15%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPA-PKPATKPAPKPTTAAPKST 286
P +P + A TT T++ A ++ A+ PA P A +P P P T P
Sbjct: 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEP--- 371
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP--------KKPVAAPAPKPRP 338
AP P P + A P ++PV P P
Sbjct: 372 VIAPAPEGY---------------------PQQSQYAQPAVQYNEPLQQPVQPQQPYYAP 410
Query: 339 ATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATK 398
A PA +P ++P A +A A+ + +
Sbjct: 411 AAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQ 470
Query: 399 PATAKPSTTSKPTTASKPATATRPATTTSKPA 430
PA +P +P P +KPA
Sbjct: 471 PAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502
Score = 30.8 bits (69), Expect = 4.2
Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 8/155 (5%)
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP----KPLTNGVT 353
P+ + T V+AA + AAP +PV P P +P+ T
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQT 368
Query: 354 KRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTA 413
PV A S + + P+ + PA + +P P
Sbjct: 369 GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQ- 427
Query: 414 SKPATATRPATTTSKPATTTSTDIEDEMNQPFTPE 448
PA A +P + E++ F P+
Sbjct: 428 --PAQQPYYAPAPEQPVAGNAWQAEEQ-QSTFAPQ 459
Score = 29.7 bits (66), Expect = 7.8
Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 12/132 (9%)
Query: 283 PKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
P P PV++P + P P+ P++PVA P P+ +
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQ-QPQQPVAPQPQYQQPQQPVA-PQPQYQQPQQP 797
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ---------RTSAA 393
AP+P ++PV+ + +P P P Q R +
Sbjct: 798 VAPQPQYQQP-QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDS 856
Query: 394 KPATKPATAKPS 405
+P KP T PS
Sbjct: 857 RPLHKPTTPLPS 868
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 40.7 bits (95), Expect = 0.003
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 204 GAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTT 263
AAA A + AAKPA K AK KT A P + KK A
Sbjct: 859 TAAAKAGAASAAFGGTVA-----VKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPA 913
Query: 264 AKPAPKPA 271
A P A
Sbjct: 914 AGLKPSAA 921
Score = 38.4 bits (89), Expect = 0.019
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 244 KTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTI 303
+ T AAK + T K A A K AA + P+ A +K
Sbjct: 857 RKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKK--VAAKTAAAKTPRKAAKKKAAPPAA 914
Query: 304 TKTATSTVSA--APKPSAPKPAAPKK 327
++ ++A +P A +P KK
Sbjct: 915 GLKPSAALAAVIGAEPVA-RPEVIKK 939
Score = 37.2 bits (86), Expect = 0.037
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 282 APKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
P+ + P+ K A++ T V AA P+ A A A PR A
Sbjct: 848 EPRESKFPPRKTAAAKAGAASAAFGGTVAVKAAK-PAKKAAAKKVAAKTAAAKTPRKAAK 906
Query: 342 APAPKPLTNGVTKRPVSA 359
A P +P +A
Sbjct: 907 KKAAPP---AAGLKPSAA 921
Score = 35.7 bits (82), Expect = 0.10
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 206 AAAGAAVAVKKATAAKKTDKPGPAAKPASKPLA------KTTTTKTTTAAKPAISPVKKT 259
AAA A A PA K A+K +A KT A P + +K +
Sbjct: 860 AAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGLKPS 919
Query: 260 ATTTAKPAPKPATKP 274
A A +P +P
Sbjct: 920 AALAAVIGAEPVARP 934
Score = 35.3 bits (81), Expect = 0.14
Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISPVKK------TATTTAKPAPKPATKPAPKPTTA 281
P K A+ + T A A P KK A T A P+ A K P A
Sbjct: 855 PPRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAA 914
Query: 282 APK 284
K
Sbjct: 915 GLK 917
Score = 33.0 bits (75), Expect = 0.79
Identities = 13/65 (20%), Positives = 23/65 (35%)
Query: 355 RPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTAS 414
R +A + +++ T A A A + + + A P A + P
Sbjct: 857 RKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGL 916
Query: 415 KPATA 419
KP+ A
Sbjct: 917 KPSAA 921
Score = 33.0 bits (75), Expect = 0.80
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 237 LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR 296
L K + +T A K ++ K+ + P+ + P P+ T AA +A V
Sbjct: 818 LDKFVSMRTRRAFKAFLAWDKEAGKVNFEFEPRESKFP-PRKTAAAKAGAASAAFGGTVA 876
Query: 297 KPVASTITKTATSTVSAAPKPS-APKPAAPKKPVAAPAPKPRPATAAPA 344
A K A V+A + P+ AA KK A PA +P+ A A
Sbjct: 877 VKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKK-AAPPAAGLKPSAALAA 924
Score = 31.5 bits (71), Expect = 2.6
Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 182 ESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKT--DKPGPAAKPASKPLAK 239
++A ++ A A AA A A K AAK P AAK + P A
Sbjct: 858 KTAAAKAGAASAAFGGTVA---VKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAA 914
Query: 240 TTTTKTTTAAKPAISPVKKT 259
AA PV +
Sbjct: 915 GLKPSAALAAVIGAEPVARP 934
Score = 30.3 bits (68), Expect = 5.2
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 372 TSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATT 425
T+A+ A A+ + AAKPA K A K + + + A + A
Sbjct: 859 TAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPP 912
Score = 29.9 bits (67), Expect = 6.3
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 354 KRPVSATTTASRTSSSSVTSASAAKPA--APRVPLSQRTSAAK---PATKPATAKPSTTS 408
++ +A A+ + + AAKPA A ++ +T+AAK A K A P+
Sbjct: 857 RKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGL 916
Query: 409 KPTTASKPATATRPATTT 426
KP+ A P
Sbjct: 917 KPSAALAAVIGAEPVARP 934
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 40.3 bits (94), Expect = 0.003
Identities = 58/277 (20%), Positives = 88/277 (31%), Gaps = 30/277 (10%)
Query: 145 EEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVG 204
E ++ +V S+ E+ E + + T+E A+ A++ A A AL
Sbjct: 21 EARKRLVAKHGAEISKLEEENRE-KEKALPKNDDMTIEEAKRRAAAAAKAK--AAALAKQ 77
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
V ++ AK K AAK + LAK T + + K A A
Sbjct: 78 KREGTEEVTEEEKAKAKA--KAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAA 135
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAP------KPAPVRKPVASTITKTATSTVSAAPKPS 318
K K + T + K A K A+ + K + +
Sbjct: 136 KAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEV 195
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
+ A K AA A K + A A NG + + + +A+ AK
Sbjct: 196 TEEEKAKAKAKAAAAAKAKAAALAKQKASQGNG---------DSGDEDAKAKAIAAAKAK 246
Query: 379 PAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
AA AA+ TK A K K S
Sbjct: 247 AAA----------AARAKTKGAEGKKEEEPKQEEPSV 273
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 40.4 bits (94), Expect = 0.003
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 217 ATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAP 276
A+A + GPA+ A+ T T+ PA T ++ A P P+ P+P
Sbjct: 378 ASAPSGSAAEGPASGGAAT--IPTPGTQGPQGTAPAAG---MTPSSAAPATPAPSAAPSP 432
Query: 277 K----PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP---SAPKPAAPKKP 328
+ AP + P+PAP R P AS + S SA+ P P A P
Sbjct: 433 RVPWDDAPPAPPRSGIPPRPAP-RMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTP 490
Score = 40.0 bits (93), Expect = 0.005
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 288 TAPKPAPVR-KPVASTITKTATSTVSAAPKPS-APKPAAPKKPVAAPAPKPRPATAAPAP 345
T P P + A T +S A P PS AP P P A PAP PAP
Sbjct: 396 TIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD-APPAPPRSGIPPRPAP 454
Query: 346 K-PLTNGVTKRPVSATTTASRTSSSSVTSASAA-KPAAPR 383
+ P + V P S + + + S +A P+ PR
Sbjct: 455 RMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPR 494
Score = 36.6 bits (84), Expect = 0.059
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 17/100 (17%)
Query: 328 PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA----------- 376
P + A P AA P P T+ P A T SS+ + A
Sbjct: 381 PSGSAAEGPASGGAATIPTP----GTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPW 436
Query: 377 --AKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTAS 414
A PA PR + R + P P P + + + A
Sbjct: 437 DDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAP 476
Score = 36.2 bits (83), Expect = 0.086
Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 12/126 (9%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS-APKPAA 324
P P P A+ S + A PA A+ T AP P AA
Sbjct: 363 PRLMPVESLRPSGGGASAPSGSAAEGPAS--GGAATIPTPGTQGPQGTAPAAGMTPSSAA 420
Query: 325 PKKPVAAPAPKPR-PATAAPAPKPLTNGVTKRPVSATTTAS-------RTSSSSVTSASA 376
P P + AP PR P AP P P +G+ RP AS +S+S +
Sbjct: 421 PATPAPSAAPSPRVPWDDAP-PAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTL 479
Query: 377 AKPAAP 382
P+
Sbjct: 480 GDPSDT 485
Score = 35.0 bits (80), Expect = 0.15
Identities = 37/133 (27%), Positives = 46/133 (34%), Gaps = 23/133 (17%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A+ P+ S + A+ A P P T+ P AP + T AP A
Sbjct: 378 ASAPSGSAAEGPASGGAATIPTPGTQ---GPQGTAPAAGMTPSSAAP------------A 422
Query: 308 TSTVSAAPKPSAP---KPAAPKKPVAAPAPKPR-----PATAAPAPKPLTNGVTKRPVSA 359
T SAAP P P P AP + P P PR P AP +
Sbjct: 423 TPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDP 482
Query: 360 TTTASRTSSSSVT 372
+ TA T S T
Sbjct: 483 SDTAEHTPSGPRT 495
Score = 33.5 bits (76), Expect = 0.52
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
+ + A P + G P T T+ ++ + S+A PA P SAA
Sbjct: 380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPA------PSAAPSPR 433
Query: 398 KPATAKPSTTSKPTTASKPATATRPATT-TSKPATTTS-TDIEDEMNQPFTPEELE 451
P P + +PA A+ P + S +D + P E
Sbjct: 434 VPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHT 489
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 40.7 bits (95), Expect = 0.004
Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 19/249 (7%)
Query: 199 GALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTT-----------TTKTTT 247
G L G G AV +++ A + PL + + + +
Sbjct: 420 GILAWGLKTPGLAVNDERSIAV--SSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVS 477
Query: 248 AAKPAISPVKKTA-TTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT 306
A + K+ T T + + + A + +R P I K+
Sbjct: 478 APASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELR-PRIGFINKS 536
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
+ + + P A +P+P+P+ + + T +
Sbjct: 537 PPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLG---KFVIGTDPFAFANTVRLTDNMR 593
Query: 367 SSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPA-TAKPSTTSKPTTASKPATATRPATT 425
+ V S+ K +A PL+ S KPAT T S A + P+
Sbjct: 594 GGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGL 653
Query: 426 TSKPATTTS 434
+ +
Sbjct: 654 GGFTSPISL 662
Score = 34.5 bits (79), Expect = 0.24
Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 14/153 (9%)
Query: 209 GAAVAVKKATAAKKTDKPGPAA--KPASKPLAKTTTTKTTTAAK--PAISPVKKTATTTA 264
G +VK +A GP + KPA+ KT ++ AA+ A S VK +
Sbjct: 597 GVGSSVKPKGSASSKPLTGPGSDLKPATLN-GKTPSSSLVGAARNAGASSKVKIPSGLGG 655
Query: 265 KPAPKPATKPAPKPTTAAPKSTTT-----APKPAPVRKPVASTITKTATSTVSA----AP 315
+P + A + + ST K T + + T
Sbjct: 656 FTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNK 715
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
K P PK P++ + L
Sbjct: 716 KTPVGGPFQPKPPLSRALDSASSPGGSGGKPGL 748
Score = 33.3 bits (76), Expect = 0.64
Identities = 50/298 (16%), Positives = 85/298 (28%), Gaps = 38/298 (12%)
Query: 110 DDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDI-VEEKEAVVT-PTDETNSETAEKETP 167
D VS P S V +++ P V T + + E + DET+S+ +
Sbjct: 465 IDSVSPP-SKRRVSAPASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSI 523
Query: 168 LSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKP- 226
P I ++ + L A +TA KP
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIV--------------ALSLASPSTAGSPRPKPS 569
Query: 227 ---GPAAKPASKPLAKTTTTKTTTAAKPAISPVK--KTATTTAKPAP----KPATKPAPK 277
T S VK +A++ P KPAT
Sbjct: 570 LGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKT 629
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P+++ + A + V+ P + S + +A + + P
Sbjct: 630 PSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDT 689
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSAS-AAKPAAPRVPLSQRTSAAK 394
T SA+TT + + + + P P+ PLS+ +A
Sbjct: 690 NGE---KAGGGTE-------SASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSAS 737
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 40.6 bits (95), Expect = 0.004
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 339 ATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATK 398
+ P VT P ++T T S + A P V + A +
Sbjct: 19 TASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETP-VAATTAAEAPSSSET 77
Query: 399 PATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDI 437
T+ P++ + TT S+ T T AT TSKP + D+
Sbjct: 78 AETSDPTSEATDTTTSEARTVTPAATETSKPVEGQTVDV 116
Score = 38.7 bits (90), Expect = 0.015
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 237 LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTA-----PK 291
T + A+ ++ T+T + P + T P + TTA
Sbjct: 16 ALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSS 75
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPS 318
S T T TS +
Sbjct: 76 ETAETSDPTSEATDTTTSEARTVTPAA 102
Score = 38.7 bits (90), Expect = 0.016
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 8/92 (8%)
Query: 365 RTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPAT 424
S S+V A A+ + + A+ A + + T AT T
Sbjct: 5 YFSKSAVALTLALLTASN-----PKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNT 59
Query: 425 TTSKPAT---TTSTDIEDEMNQPFTPEELEAA 453
T AT + E T E +
Sbjct: 60 ETPVAATTAAEAPSSSETAETSDPTSEATDTT 91
Score = 38.3 bits (89), Expect = 0.018
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAA-PAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
+K+A + A S PK A ++ V PA P T
Sbjct: 6 FSKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAA 65
Query: 362 TASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKP 404
T + + SS +A + P + + + T+KP
Sbjct: 66 TTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 36.4 bits (84), Expect = 0.067
Identities = 19/92 (20%), Positives = 35/92 (38%)
Query: 349 TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTS 408
+N + TT TS+ + + A ++ AA A + ++ + +
Sbjct: 21 SNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAET 80
Query: 409 KPTTASKPATATRPATTTSKPATTTSTDIEDE 440
T+ T T A T + AT TS +E +
Sbjct: 81 SDPTSEATDTTTSEARTVTPAATETSKPVEGQ 112
Score = 34.8 bits (80), Expect = 0.20
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT 288
A+ T+T T P S + A T P AT A + T
Sbjct: 27 QAEEIVTTTPATSTEAEQTT--PVESDATEEADNT--ETPVAATTAA---EAPSSSETAE 79
Query: 289 APKPAPVRKPVASTITKTATSTVSAAPKP 317
P ++ +T T + KP
Sbjct: 80 TSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 34.4 bits (79), Expect = 0.27
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 197 VAGALVVGAAAAGAAVAVKKATA-----AKKTDKPGPAAKPASKPLAKTTTTKTTTAAKP 251
VA L + A+ ++ + + ++ P A++ T T T A
Sbjct: 11 VALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAE 70
Query: 252 AISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTA 289
A S + T+ T + T A T+
Sbjct: 71 APSSSETAETSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 32.5 bits (74), Expect = 1.0
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
T + PK P ST + T S A + + AA AP
Sbjct: 19 TASNPKLAQAEEIVTTT--PATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSE 76
Query: 339 ATAAPAPKPL----TNGVTKRPVSATTTASR 365
P T + A T S+
Sbjct: 77 TAETSDPTSEATDTTTSEARTVTPAATETSK 107
Score = 31.7 bits (72), Expect = 2.0
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 6/122 (4%)
Query: 249 AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
+K A++ T + + P T+ TT P + + +T T A
Sbjct: 7 SKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTT-PVESDATEEADNTETPVAA 65
Query: 309 STVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
+T + AP S + A T PA T +PV T R S
Sbjct: 66 TTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPA-----ATETSKPVEGQTVDVRILS 120
Query: 369 SS 370
++
Sbjct: 121 TT 122
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 39.9 bits (93), Expect = 0.005
Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 15/218 (6%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P + + P +++T T+T + A+ + T+TT+A + + ++ S
Sbjct: 91 PPSSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSADCNDS--EQSSTPNLNSSDTS 148
Query: 286 TT---TAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
T+ P + VR S I+ +S S A AP P +P AAP KP
Sbjct: 149 TSSSGALPSTSVVRGFSPSHIS---SSYRSTAQLNKAPSPTKSAEPTAAPQAKPEL---- 201
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATA 402
PK T S + P + + K +
Sbjct: 202 --PKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDELGKSLPS 259
Query: 403 KPSTTSKPTT-ASKPATATRPATTTSKPATTTSTDIED 439
S K + + T T P T+ T+ +D
Sbjct: 260 LMSPRKKTASFKEQVVTRTFPERTSDDDEDAIETEEDD 297
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 39.3 bits (92), Expect = 0.005
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 251 PAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATST 310
P P K+ KP PKP KP PKP P +P KPV +T
Sbjct: 80 PIPEPPKEAPVVIPKPEPKPKPKPKPKPK---PVKKVE-EQPKREVKPVEPRPASPFENT 135
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
A P S AA KPV + + PR
Sbjct: 136 APARPTSSTA-TAAASKPVTSVSSGPRA 162
Score = 38.9 bits (91), Expect = 0.006
Identities = 26/117 (22%), Positives = 37/117 (31%), Gaps = 2/117 (1%)
Query: 250 KPAIS-PVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
PA + P+ T A P A +P P+P P+P V
Sbjct: 41 LPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPK 100
Query: 309 STVSAAPKPSAPKPAAPKKPVAAPAPKPR-PATAAPAPKPLTNGVTKRPVSATTTAS 364
PKP PK+ V P+P P +P ++ T T+ S
Sbjct: 101 PKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVS 157
Score = 38.1 bits (89), Expect = 0.011
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
V+ A P +PV P P+P P P P+ V +P
Sbjct: 53 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV---VIPKPEPK----------- 98
Query: 371 VTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPA 430
KP P+ + K KP +P++ + T ++P ++T SKP
Sbjct: 99 ----PKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSST-ATAAASKPV 153
Query: 431 TTTST 435
T+ S+
Sbjct: 154 TSVSS 158
Score = 38.1 bits (89), Expect = 0.012
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
++P +P P+P +P P+P PK APV P
Sbjct: 53 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPE-----PPKEAPVVIPKPE----------- 96
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
PKP PKP KPV +P+ P+P + P T++ + ++S
Sbjct: 97 --PKPK-PKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPV 153
Query: 373 SASAAKPAA 381
++ ++ P A
Sbjct: 154 TSVSSGPRA 162
Score = 35.4 bits (82), Expect = 0.085
Identities = 30/147 (20%), Positives = 43/147 (29%), Gaps = 33/147 (22%)
Query: 270 PATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
PA P+ P+ +P P +P+ P+P P KP
Sbjct: 55 PADLEPPQAVQPPPEPV---VEPEPEPEPI---------------PEPPKEAPVVIPKPE 96
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
P PKP+P P P KR V A P P
Sbjct: 97 PKPKPKPKPK---PKPVKKVEEQPKREVKPV------------EPRPASPFENTAPARPT 141
Query: 390 TSAAKPATKPATAKPSTTSKPTTASKP 416
+S A A S+ + + ++P
Sbjct: 142 SSTATAAASKPVTSVSSGPRALSRNQP 168
Score = 34.3 bits (79), Expect = 0.17
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 221 KKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP--KPATKPAPKP 278
K KP P KP KP+ K K + PV+ + + +P + A
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQP-----KREVKPVEPRPASPFENTAPARPTSSTATAA 148
Query: 279 TTAAPKSTTTAPKPAPVRKPV 299
+ S ++ P+ +P
Sbjct: 149 ASKPVTSVSSGPRALSRNQPQ 169
Score = 33.5 bits (77), Expect = 0.29
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P P KP KP KP PVKK + +PA AP
Sbjct: 93 PKPEPKPKPKP-------------KPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPAR 139
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAAPKP-SAPKPAAPKKPVA 330
T++ A KPV ++VS+ P+ S +P P + A
Sbjct: 140 PTSSTATAAASKPV---------TSVSSGPRALSRNQPQYPARAQA 176
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 39.5 bits (92), Expect = 0.006
Identities = 30/114 (26%), Positives = 31/114 (27%), Gaps = 10/114 (8%)
Query: 239 KTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKP 298
K T AA S V TA P P P AAP P P P P
Sbjct: 12 KGLWTTLAIAAVAGASAVAIALPATANADPAPPPPPPS-TAAAAPAPAAPPPPPPPAAPP 70
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGV 352
P PA P P P P AP P + N V
Sbjct: 71 ---------APQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRIDNAV 115
Score = 37.2 bits (86), Expect = 0.025
Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
P + K T A V A I AT+ AP P P AA AAP P
Sbjct: 4 VDPNSTRRKGLWTTLAIAAVAGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPP 63
Query: 336 PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
P PA A PAP+P P A A + P R+
Sbjct: 64 PPPA-APPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPGRID 112
Score = 34.1 bits (78), Expect = 0.26
Identities = 34/114 (29%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 187 STASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTT 246
ST L +A A V GA+A A+A+ A P P + A+ P
Sbjct: 8 STRRKGLWTTLAIAAVAGASAV--AIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPP 65
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
AA PA P A P P PA AP P P + P P R A
Sbjct: 66 PAAPPAPQP----DDPNAAPPPPPADPNAPPPPPVDPNAPPPPA-PEPGRIDNA 114
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 39.5 bits (92), Expect = 0.007
Identities = 53/230 (23%), Positives = 79/230 (34%), Gaps = 17/230 (7%)
Query: 144 VEEKEAVVTPTDETNSE----TAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAG 199
E E +V P D+ + T E + EVP A ++ + + V
Sbjct: 14 GEVIEVLVKPGDKVEAGQSLITLESDKASMEVP--SSAAGIIKEIKVKVGDTLPVGGVIA 71
Query: 200 ALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT 259
L VGA A A A K+A A P PAA+ + P A ++ K T
Sbjct: 72 TLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIEKVT 131
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAP-VRKPVASTITKTA-------TSTV 311
+ T + K++ P PA V K V + + T +V
Sbjct: 132 VIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSV 191
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
+ + +AP PA+ + +PA AAPA P A T
Sbjct: 192 AGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQ---APAPQQAGT 238
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 38.7 bits (89), Expect = 0.008
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 244 KTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTI 303
K +A S A + A AP PA P AAP T P PAP P +
Sbjct: 67 KANSACMQRPSGQSPLAPSPACAAPAPAC---PACAPAAPAPAVTCPAPAPACPPATAPT 123
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
+ A A P+ + P A P P P+PA AA
Sbjct: 124 CPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAA 162
Score = 34.5 bits (78), Expect = 0.19
Identities = 41/162 (25%), Positives = 53/162 (32%), Gaps = 15/162 (9%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
P P P P K + + +PS P AP AAPAP
Sbjct: 35 PAPAAPCPPDADVDPLDKYSVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACAAPAPA 94
Query: 336 -PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAK 394
P A AAPAP A T + + +A P A ++ A
Sbjct: 95 CPACAPAAPAP-------------AVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACP 141
Query: 395 PATKPAT-AKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
P+T+ A P T KP A+KP PA + T
Sbjct: 142 PSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPT 183
Score = 32.1 bits (72), Expect = 1.1
Identities = 36/122 (29%), Positives = 43/122 (35%), Gaps = 9/122 (7%)
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
PLA + A PA +P T PAP PA PA PT P +PAP
Sbjct: 81 PLAPSPACAAPAPACPACAPAAPAPAVTC-PAPAPACPPATAPTCPPPAVCPAPARPAPA 139
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
P +T AP PKPA KP+ P P A + +
Sbjct: 140 CPP--------STRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAAS 191
Query: 356 PV 357
PV
Sbjct: 192 PV 193
Score = 30.6 bits (68), Expect = 2.8
Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 17/157 (10%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
P K + K A + + K+ + + + P+A + A + A P+AP PA
Sbjct: 49 PLDKYSVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACAAPAPACPACAPAAPAPAV- 107
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
P APA PATA P P RP A ++R P AP +P
Sbjct: 108 TCPAPAPACP--PATAPTCPPPAVCPAPARPAPACPPSTRQC-----------PPAPPLP 154
Query: 386 LSQRTSAAKPATKPATAKP---STTSKPTTASKPATA 419
+ AAKP P S PT + PA +
Sbjct: 155 TPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAAS 191
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 38.1 bits (89), Expect = 0.009
Identities = 30/115 (26%), Positives = 35/115 (30%), Gaps = 32/115 (27%)
Query: 232 PASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK 291
P P + AA P++ P T A P +PAP PK
Sbjct: 64 PTQPPEGAAEAVRAGDAAAPSLDP-----ATVAPPNTPVEPEPAPVEP----------PK 108
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK 346
P PV KP PKP P+ P P PKP AP
Sbjct: 109 PKPVEKPK---------------PKPK-PQQKVEAPPAPKPEPKP-VVEEKAAPT 146
Score = 36.9 bits (86), Expect = 0.023
Identities = 19/79 (24%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
G A + A + T A + KP P KP PKP +
Sbjct: 69 EGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP----QQK 124
Query: 286 TTTAPKPAPVRKPVASTIT 304
P P P KPV
Sbjct: 125 VEAPPAPKPEPKPVVEEKA 143
Score = 35.0 bits (81), Expect = 0.10
Identities = 26/100 (26%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKP----APVRKPVASTITKTATSTVSAAPKPSAPKPA 323
PKP + P AA ++ T P A A+ AT P P P
Sbjct: 45 PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPV 104
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
P KP PKP+P P +PV A
Sbjct: 105 EPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144
Score = 34.2 bits (79), Expect = 0.21
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 209 GAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP 268
GAA AV+ AA + P A P + + P PV+K KP P
Sbjct: 70 GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPV-----EPPKPKPVEKP-----KPKP 119
Query: 269 KPATK----PAPKPTTAAPKSTTTAPK 291
KP K PAPKP AP
Sbjct: 120 KPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Score = 31.9 bits (73), Expect = 0.93
Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 15/118 (12%)
Query: 171 VPVIP-----QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDK 225
+P++P E + +A ++ + AAA A +
Sbjct: 41 IPLVPKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE 100
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKK-TATTTAKPAPKPATKPAPKPTTAA 282
P P P KP+ K KP P +K A KP PKP + PT A
Sbjct: 101 PAPVEPPKPKPVEKP---------KPKPKPQQKVEAPPAPKPEPKPVVEEKAAPTGKA 149
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 38.8 bits (90), Expect = 0.010
Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 2/104 (1%)
Query: 277 KPTTAAPKSTTTAPKPAPVR--KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
+P T AP A + +T V KP A PK P
Sbjct: 126 EPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKR 185
Query: 335 KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
A A P +ATT +T+S + T+A+ A
Sbjct: 186 TEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAA 229
Score = 36.5 bits (84), Expect = 0.054
Identities = 35/158 (22%), Positives = 51/158 (32%), Gaps = 31/158 (19%)
Query: 206 AAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAK 265
A + + + AT A + ++ + TT+ P +K A K
Sbjct: 117 VAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTR----------PARKQAVIEPK 166
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
P+ K PKP PK T A A + P A++ APK A
Sbjct: 167 -KPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTP--------------APKETAT 211
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
PV +P A P G T V + +A
Sbjct: 212 TAPVQTASP------AQTTATPAAGGKTAGNVGSLKSA 243
Score = 35.3 bits (81), Expect = 0.10
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA------APKKPVAAPAPKPRPA 339
+T +PA V PV + T+ A +P+ +PA PKKP A +P+P
Sbjct: 121 STLPTEPATV-APVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPV 179
Query: 340 TAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKP 399
P V A S + + + + A+P + + K A
Sbjct: 180 AQTPKRTEPAAPVA--STKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNV 237
Query: 400 ATAKPSTTSKPT 411
+ K + +S T
Sbjct: 238 GSLKSAPSSHYT 249
Score = 31.1 bits (70), Expect = 2.3
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAA-KPAAPRVPLSQRTSAAKPA 396
PAT AP + NG R + T TA R +++ A +P P+ + +T A
Sbjct: 127 PATVAP----VRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQA--TAKTEPKPVA 180
Query: 397 TKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
P +P+ T A + P T + T++
Sbjct: 181 QTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTAS 219
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 39.4 bits (92), Expect = 0.010
Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 31/203 (15%)
Query: 277 KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP-----VAA 331
T P++T +A P +++ S + + S S K P +K + A
Sbjct: 10 TKTAVQPEATPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSSAPRQIQA 69
Query: 332 PAPKPRPATAAPAP------------KPLTNGVTKRPVSATTTASRTSSSSVTSAS---- 375
P+ TAA P +G T+ P S+ + T S V
Sbjct: 70 APPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVARHEMEDL 129
Query: 376 AAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
A +P Q + + P + + T++ PATA + +
Sbjct: 130 AGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATA----------LASAAL 179
Query: 436 DIEDEMNQPFTPEELEAAIKSGL 458
+DE+ Q + A +S L
Sbjct: 180 FKDDEIRQEVDAARSDQASQSRL 202
Score = 32.8 bits (75), Expect = 0.98
Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 22/238 (9%)
Query: 165 ETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALV-VGAAAAGAAVAV-KKATAAKK 222
T + P A ++S+ S A + +L G V +K++A ++
Sbjct: 9 ATKTAVQPEATPSAGAPTGLQQSSESPTQRA--SHSLASEGKKNRKKMPKVFQKSSAPRQ 66
Query: 223 TDKPGPAAKPASKPLAKTTTTKTTTAA-KPAISPVKKTATTTAKPAPKPATKPAPKPTTA 281
P A + +++ T + A ++ A +
Sbjct: 67 IQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVARHEM 126
Query: 282 APKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
+ KP R+ + K++ P PATA
Sbjct: 127 EDLAGRPVVKPDADRQLRQDILNKSS-------------SSRRPPVSKEEGTSSKMPATA 173
Query: 342 APAPKPLTNGVTKRPVSAT----TTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP 395
+ + ++ V A + SR S S + AAPR P+ R++ +
Sbjct: 174 LASAALFKDDEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRSAGGRF 231
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 38.8 bits (90), Expect = 0.011
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
G + A + TKT+ + A + T A K AP TT +
Sbjct: 117 GTYNQLG-NAGASASITKTSNGS-DAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAA 174
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
TTA A TAT+ + KP KP KK A A K + + A A
Sbjct: 175 TTAAISA-----------TTATTPTTTQKKPR--KPRQTKKTGPAAAAKAQASAQAQA 219
Score = 38.1 bits (88), Expect = 0.019
Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 259 TATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS 318
T + + AA S+T A + T+ V +A +
Sbjct: 118 TYNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATTA 177
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
A P KPR KP T +A AS + + +++ +
Sbjct: 178 AISATTATTPTTTQK-KPR--------KPRQTKKTGPAAAAKAQAS--AQAQAQASAYNQ 226
Query: 379 PAAPRVPLSQRTSAAKPATKP 399
+ VP + A P P
Sbjct: 227 MGSLGVPQNTSMLAQIPNPTP 247
Score = 37.7 bits (87), Expect = 0.023
Identities = 43/204 (21%), Positives = 69/204 (33%), Gaps = 20/204 (9%)
Query: 297 KPVAST-ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
AS ITKT+ + +A +A PAA K A A P T GV
Sbjct: 124 NAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNT----------TTGVGSA 173
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAA--KPATKPATAKPSTTSKPTTA 413
+A +A ++++ + + KP PR +AA A+ A A+ S ++ +
Sbjct: 174 ATTAAISA---TTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSL 230
Query: 414 SKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPGRDNIHYPMIE 473
P + A + + N +P L + G N M
Sbjct: 231 GVPQNTSMLAQIPNPTPLMQLLNGVSPNNAMASP--LNNMSPMRNLNQMGNQNNGGQM-- 286
Query: 474 NLPDCNKYLNIMKMICNKHWGMNP 497
N +N + + GM P
Sbjct: 287 TPSANNGNMNNQSRENSMNQGMTP 310
Score = 33.8 bits (77), Expect = 0.38
Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 11/139 (7%)
Query: 220 AKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP-ATKPAPKP 278
+ G +A T ++TA PA + V A A P T
Sbjct: 119 YNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKV-----LKANAASAPNTTTGVGSA 173
Query: 279 TTAAPKSTTTAPKPAPV----RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
T A S TTA P RKP + T A + + A + + +A + + P
Sbjct: 174 ATTAAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVP 233
Query: 335 KPRPATAA-PAPKPLTNGV 352
+ A P P PL +
Sbjct: 234 QNTSMLAQIPNPTPLMQLL 252
Score = 30.4 bits (68), Expect = 4.8
Identities = 27/137 (19%), Positives = 39/137 (28%), Gaps = 3/137 (2%)
Query: 156 ETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVK 215
ET + + + + + STA++ AAKV A A V
Sbjct: 114 ETLGTYNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSA 173
Query: 216 KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPA 275
TAA KP T KT AA +A A+ +
Sbjct: 174 ATTAAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQA---SAQAQAQASAYNQMGSL 230
Query: 276 PKPTTAAPKSTTTAPKP 292
P + + P P
Sbjct: 231 GVPQNTSMLAQIPNPTP 247
Score = 29.6 bits (66), Expect = 7.4
Identities = 21/128 (16%), Positives = 29/128 (22%), Gaps = 4/128 (3%)
Query: 309 STVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
TV + K + + +A K S T +
Sbjct: 96 RTVDEYSETYKEKKFQVLETLGTYNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKV 155
Query: 369 SSVTSASAAKPAA--PRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTT 426
+ASA + SA T T K KP K A
Sbjct: 156 LKANAASAPNTTTGVGSAATTAAISATTATTPTTTQK--KPRKPRQTKKTGPAAAAKAQA 213
Query: 427 SKPATTTS 434
S A +
Sbjct: 214 SAQAQAQA 221
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 38.7 bits (90), Expect = 0.013
Identities = 26/124 (20%), Positives = 37/124 (29%), Gaps = 12/124 (9%)
Query: 200 ALVVGAAAAGAAVAVKKATAAKKTD-KPGPAAK------PASKPLAKTTTTKTTTAAKPA 252
V A +++ A + P PAS TT+ T TA P
Sbjct: 719 DTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQ 778
Query: 253 I----SPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPV-ASTITKTA 307
+ + T T ++TT++P P P ST T T
Sbjct: 779 SPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTT 838
Query: 308 TSTV 311
TS
Sbjct: 839 TSPS 842
Score = 37.9 bits (88), Expect = 0.025
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 347 PLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR-TSAAKPATKPATAKPS 405
P + T S T TA S + T + + A + TS T T +
Sbjct: 758 PASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTT 817
Query: 406 TTSKPTTASKPATATRPATTTSKPATTT 433
++ PT + P + TTT+ P+ TT
Sbjct: 818 SSPSPTQTTSPTQTSTSTTTTTSPSQTT 845
Score = 35.6 bits (82), Expect = 0.13
Identities = 28/105 (26%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 338 PATAAPAPKPLTNGVTKRPVSAT--TTASRTSSSSVTSASAAKPA----APRVPLSQRTS 391
PA P T V R + T S T+S + T+ P TS
Sbjct: 737 PAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTS 796
Query: 392 AAKPATKPATAKPSTTSKPTTAS-KPATATRPATTTSKPATTTST 435
T K T ++ TT+S P T P T++ TTTS
Sbjct: 797 ILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSP 841
Score = 35.2 bits (81), Expect = 0.18
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
Query: 272 TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA 331
PA + P TT + P + T T TS A P +P +A
Sbjct: 735 VFPAGENWGFIP---TTKRVKVRIMDPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSA 791
Query: 332 PAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA 376
+ T T+ S+ + TS + ++++
Sbjct: 792 YSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTT 836
Score = 34.8 bits (80), Expect = 0.24
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 238 AKTTTTKTTTAAKPAISP------------VKKTATTTAKPAPKPATKPAPKPT-TAAPK 284
+ TKT T + + KT T T P+ PT T+
Sbjct: 776 VPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTST 835
Query: 285 STTTAPKPAPVRKPVASTI 303
+TTT+P + I
Sbjct: 836 TTTTSPSQTTTGGGICGPI 854
Score = 31.8 bits (72), Expect = 2.0
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 150 VVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAG 209
++ P T + T +EVP P + +T +
Sbjct: 755 IMDPASGTGTSITTSGTFTAEVPQSPTKTET-------------TLSYSAYSNTSILIET 801
Query: 210 AAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
+V + K +T P+ + P +T+T TTT+ P+ +
Sbjct: 802 TSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTS--PSQTTTGGGICGPI 854
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 37.1 bits (86), Expect = 0.013
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT 272
A +KA +++ PAA + LA+ A +P TA P K
Sbjct: 42 ANEKAKKLEQSSDAKPAAA-SLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLA 100
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKP 298
K+ PV P
Sbjct: 101 PRPLFTAAREVKTVVPVSSVTPVTPP 126
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 38.7 bits (90), Expect = 0.014
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 9/118 (7%)
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
+A+ A A A A A T+ + + ++ T A A P
Sbjct: 333 LALLHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPL 392
Query: 272 TKPAPK----PTTAAPKSTTTAPKPAPVRKPVAST-----ITKTATSTVSAAPKPSAP 320
P+ P +S P AP P + + A + + P
Sbjct: 393 PDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAALKMQLRAFLREARP 450
Score = 37.9 bits (88), Expect = 0.024
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Query: 261 TTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAP 320
++ AP + + K V S ++A + + A P
Sbjct: 336 LHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRS--LRSAPTAAATAAGAPLP 393
Query: 321 KPAAPKKPVAAPAPKPRPATAAPAPKP 347
+ AP P R A A P P
Sbjct: 394 DFDPRPRGPPAPEP-ARSAEAPPLVAP 419
Score = 36.0 bits (83), Expect = 0.083
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVA-APAPKPRPATAAPAPKPLTNGVTKRPVSATTTASR 365
A + + AP + +K V + ATAA AP P + + P + S
Sbjct: 352 AVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSA 411
Query: 366 TSSSSVTSASAAKPAAPR 383
+ V A+A A R
Sbjct: 412 EAPPLVAPAAAPAGLALR 429
Score = 34.4 bits (79), Expect = 0.22
Identities = 14/90 (15%), Positives = 20/90 (22%), Gaps = 5/90 (5%)
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
A A P P +T+R S A A A PL
Sbjct: 341 ALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRS-----APTAAATAAGAPLPDF 395
Query: 390 TSAAKPATKPATAKPSTTSKPTTASKPATA 419
+ P A+ + +
Sbjct: 396 DPRPRGPPAPEPARSAEAPPLVAPAAAPAG 425
Score = 32.9 bits (75), Expect = 0.68
Identities = 22/101 (21%), Positives = 27/101 (26%), Gaps = 23/101 (22%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
AA +P T K PT AA + P P +
Sbjct: 351 AAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRG--------- 401
Query: 308 TSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
P AP+ +A AP AAPA L
Sbjct: 402 --------------PPAPEPARSAEAPPLVAPAAAPAGLAL 428
Score = 31.3 bits (71), Expect = 2.6
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P+ AP PA + + + V + A P+ P+PR
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRL-----EKEVRSLRSAPTAAATAAGAPLPDFDPRPR 400
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASR-----TSSSSVTSASAAKPAAPRV 384
A + P +A + ++ + + + A P V
Sbjct: 401 GPPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAALKMQLRAFLREARPHV 452
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 38.4 bits (90), Expect = 0.014
Identities = 25/123 (20%), Positives = 33/123 (26%), Gaps = 23/123 (18%)
Query: 194 AAKVAGALVVGAAAAGAAV----------------AVKKATAAKKTDKPGPAAKPASKPL 237
GA V AA AG A A A G A + +
Sbjct: 278 GLAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGV 337
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTA-------KPAPKPATKPAPKPTTAAPKSTTTAP 290
A A A SP+++ A+ A + + A AA A
Sbjct: 338 AAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAGAAAAG 397
Query: 291 KPA 293
PA
Sbjct: 398 PPA 400
Score = 36.8 bits (86), Expect = 0.042
Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 7/132 (5%)
Query: 195 AKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKP---ASKPLAKTTTTKTTTAAKP 251
A V L G AA AA A G AA A+ ++ A
Sbjct: 273 AAVGTGLAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGS 332
Query: 252 AISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTV 311
+ V A+ A P + + A +S ++ + + A +
Sbjct: 333 GAAGVAAGLGGVARAGASAAASPLRRAASRAAESMKSSFRAG--ARSTGGGAGGAAAA-- 388
Query: 312 SAAPKPSAPKPA 323
+AA +A PA
Sbjct: 389 AAAGAAAAGPPA 400
Score = 34.9 bits (81), Expect = 0.18
Identities = 33/145 (22%), Positives = 42/145 (28%), Gaps = 14/145 (9%)
Query: 198 AGALVV-GAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPV 256
AGA V G AA GAAVA A A G AA + A+ A A S
Sbjct: 271 AGAAVGTGLAAGGAAVAA--AAGAGLAAGGGAAAAGGAAAAARGGAA-AAGGASSAYS-- 325
Query: 257 KKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK 316
A A + +P+R+ + +S + A
Sbjct: 326 ---AGAAGGSGAAGVAAGLGGVARAGASAAA-----SPLRRAASRAAESMKSSFRAGARS 377
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATA 341
A A A PA A
Sbjct: 378 TGGGAGGAAAAAAAGAAAAGPPAWA 402
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 38.4 bits (89), Expect = 0.015
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 219 AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKP 278
A KK G A +PA P + AA P K A T AP A A KP
Sbjct: 4 ALKKIFGKGEAEQPAPAPPSP-------AAAPAPPPPAKTAAPATKAAAPAAAAPRAEKP 56
Query: 279 TTAAPKSTTTAPKPAPVRKP 298
P+ PKPA + K
Sbjct: 57 KKDKPRRERK-PKPASLWKL 75
Score = 36.4 bits (84), Expect = 0.060
Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 27/98 (27%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A +PA +P P+P A P P TAAP + AP A R
Sbjct: 14 AEQPAPAP----------PSPAAAPAPPPPAKTAAPATKAAAPAAAAPR----------- 52
Query: 308 TSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
A KP KP +KP A K P
Sbjct: 53 ------AEKPKKDKPRRERKPKPASLWKLEDFVVEPQE 84
Score = 35.3 bits (81), Expect = 0.12
Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 15/76 (19%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
+ P+P A P TA P A AAP+ PK
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAA------------AAPRAEKPKKD 59
Query: 324 APKKPVAAPAPKPRPA 339
P++ PKP
Sbjct: 60 KPRRE---RKPKPASL 72
Score = 33.7 bits (77), Expect = 0.37
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA 376
+ AP P AAPAP P TAAPA K P +A A +
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKA------AAPAAAAPRAEKPKKDKPRRERK 66
Query: 377 AKPAAP 382
KPA+
Sbjct: 67 PKPASL 72
Score = 33.7 bits (77), Expect = 0.39
Identities = 12/35 (34%), Positives = 12/35 (34%)
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
A AP A PA PAT A AP
Sbjct: 14 AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAA 48
Score = 33.3 bits (76), Expect = 0.48
Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 19/82 (23%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
A +PA P AP PA +AAP+ PK P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAA-----------PAAAAPRAEKPKKDKP 61
Query: 326 KKPVAAPAPKPRPATAAPAPKP 347
++ PKP A K
Sbjct: 62 RRE---RKPKP-----ASLWKL 75
Score = 32.2 bits (73), Expect = 1.3
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 284 KSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP-KPRPATAA 342
K P PAP A +AAP A PAA P KPR
Sbjct: 11 KGEAEQPAPAPPSPAAA---PAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPR---RE 64
Query: 343 PAPKPLTN 350
PKP +
Sbjct: 65 RKPKPASL 72
Score = 30.3 bits (68), Expect = 4.2
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 32/109 (29%)
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
K PAP P AAPAP P + T+A A K AAP
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPP---------------------PAKTAAPATKAAAPA-- 47
Query: 386 LSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTS 434
+AA A KP KP KP KPA+ + +P +
Sbjct: 48 -----AAAPRAEKPKKDKPRRERKP----KPASLWKLEDFVVEPQEGKT 87
Score = 29.9 bits (67), Expect = 7.2
Identities = 16/61 (26%), Positives = 21/61 (34%)
Query: 216 KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPA 275
K A + P A + P T T AA PA + + KP + KPA
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70
Query: 276 P 276
Sbjct: 71 S 71
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 38.2 bits (89), Expect = 0.018
Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 291 KPAPVRKPVASTITK-----------TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPA 339
K PV KP+A + + S+ S APKPS P AP P+P P+
Sbjct: 63 KDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSA-PKPSPAPQKQ 121
Query: 340 TAAPA-PKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATK 398
+ P+ P PL++ + + A+ A + + SA + P + ++ +
Sbjct: 122 SPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQS 181
Query: 399 PATAKPSTTSKPTTASKPATATRPATTTSKP 429
PA+A + A + P
Sbjct: 182 PASANQQAAATTPATYPAAAPVSTGSYEDVP 212
Score = 35.1 bits (81), Expect = 0.13
Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 10/125 (8%)
Query: 220 AKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPT 279
A K K +A PA KP T + +P K++ +P P +
Sbjct: 84 AFKNYKLESSASPAPKPSEIAPTAPPSAPKPSP-APQKQSPEP---SSPAPLSDKESGDR 139
Query: 280 TAAPKSTTTAPKPAPVR-KPVAST-----ITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
A K + VA + I K + SA + AA P PA
Sbjct: 140 IFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANQQAAATTPATYPA 199
Query: 334 PKPRP 338
P
Sbjct: 200 AAPVS 204
Score = 34.8 bits (80), Expect = 0.21
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
+ + PAPKP+ AP + +APKP+P AP+ +P+P++P
Sbjct: 90 LESSASPAPKPSEIAPTAPPSAPKPSP-------------------APQKQSPEPSSP-A 129
Query: 328 PVAAPAPKPRPATAAPAPKPLT--NGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
P++ R A+P K L G+ V+ + R + S PA+
Sbjct: 130 PLSDKESGDRIF-ASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANQQ 188
Query: 386 LSQRTSAAKPATKP 399
+ T A PA P
Sbjct: 189 AAATTPATYPAAAP 202
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 37.4 bits (87), Expect = 0.027
Identities = 23/105 (21%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 256 VKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
++ P P P A P + PA +P A+ AP
Sbjct: 374 LEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAA----------RPAP 423
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
P+ P AAP A PA A G K+P
Sbjct: 424 APAPPAAAAPPARSADPAAAASAGDRWRAFVAFVKG--KKPALGA 466
Score = 36.3 bits (84), Expect = 0.063
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
+ + A PAAP P AA P PA ++P A P A P
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAP----PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP 433
Query: 423 ATTTSKPATTTSTD 436
++ PA S
Sbjct: 434 PARSADPAAAASAG 447
Score = 33.2 bits (76), Expect = 0.68
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
+ +A P+AP PAA P PA RPA A PAP P P +
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAA--APPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438
Query: 361 TTASRTSSSS-----VTSASAAKPAA 381
A+ S+ V KPA
Sbjct: 439 DPAAAASAGDRWRAFVAFVKGKKPAL 464
Score = 30.1 bits (68), Expect = 5.0
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 251 PAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATST 310
PA A T A PA P P P A + P PAP A+ +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA----PPARS 437
Query: 311 VSAAPKPSAP 320
A SA
Sbjct: 438 ADPAAAASAG 447
Score = 30.1 bits (68), Expect = 6.0
Identities = 12/67 (17%), Positives = 16/67 (23%)
Query: 235 KPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAP 294
+ L + + A A P PA P AP A P
Sbjct: 375 EALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPP 434
Query: 295 VRKPVAS 301
R +
Sbjct: 435 ARSADPA 441
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 37.7 bits (87), Expect = 0.028
Identities = 43/237 (18%), Positives = 71/237 (29%), Gaps = 17/237 (7%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPV------KKTATTTAKPAPKPATKPAPKPT 279
PGP++ + LA+T + T+ + V ++ A + + A + K
Sbjct: 441 PGPSSGLDGEGLAETLKQELNTSLSQVVDTVVKRFVHQRRALSKQAKPERAAPEQLFKDL 500
Query: 280 TAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA----PK 335
+ + +P V +S A PKP VAA A P
Sbjct: 501 MLPSQMLD---RKSPRTHTVNDRGQCFGDPDISTAAMFIIPKPPDSFANVAAAALYNSPF 557
Query: 336 PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP 395
P T P P V+ + + + +T + ++ A R +
Sbjct: 558 CMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQ 617
Query: 396 ATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEA 452
P++ S P P P T + E M PF L A
Sbjct: 618 PLHPSSLSASMGFHPPPFRHPF----PLPLTVAIPNPSLHQSEVFMGYPFQSPHLGA 670
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 37.2 bits (86), Expect = 0.033
Identities = 34/154 (22%), Positives = 46/154 (29%), Gaps = 22/154 (14%)
Query: 309 STVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
+ + AP+ + AA +P PAP+PRP A N R + +T
Sbjct: 390 NLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVRQR 449
Query: 369 SSVTSA--SAAKPAA----------PRVPLSQRTS----------AAKPATKPATAKPST 406
S T + A A PL++R S A K A
Sbjct: 450 SRTTEVMLAGATVRALEGNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCE 509
Query: 407 TSKPTTASKPATATRPATTTSKPATTTSTDIEDE 440
T KP A+ PA A S
Sbjct: 510 TGKPAAAASPAGGGANAPPAKPVKPPPSCLSAQR 543
Score = 34.1 bits (78), Expect = 0.35
Identities = 36/167 (21%), Positives = 49/167 (29%), Gaps = 8/167 (4%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTK-RPVSATT---- 361
A SAA +PA +PV AP P AA + K R S TT
Sbjct: 398 AAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVRQRSRTTEVML 457
Query: 362 ---TASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPAT 418
T +++ + P A R+ + A K A T A
Sbjct: 458 AGATVRALEGNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGKPAAAA 517
Query: 419 ATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPGRD 465
+ + PA Q E + A +TP RD
Sbjct: 518 SPAGGGANAPPAKPVKPPPSCLSAQRDEEESMLAEAGRDDPSTPRRD 564
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 37.0 bits (86), Expect = 0.035
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 240 TTTTKTTTA--AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
TT K + A A+P +S T + PAP+ P T + T APV
Sbjct: 185 TTVAKQSYALPARPDLSGGMGTPSVQPAPAPQGDVLPVSNSTLKSEDPTG-----APVT- 238
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKK-PVAAPAPKPRPATAAPAP 345
+S T+ + S P P AP P APA P AA +
Sbjct: 239 --SSGFLGAPTTLAPGVLEGSEPTPTAPSSAPATAPAAAA-PQAAATSS 284
Score = 31.2 bits (71), Expect = 2.1
Identities = 17/77 (22%), Positives = 29/77 (37%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P PA + P++ +T P S A TT P ++P P ++AP +
Sbjct: 211 PAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAPSSAPAT 270
Query: 286 TTTAPKPAPVRKPVAST 302
A P +++
Sbjct: 271 APAAAAPQAAATSSSAS 287
Score = 30.8 bits (70), Expect = 3.2
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 306 TATSTVSAAPKPSAPKPAAP--KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
TA +TV+ K S PA P + P+ +P PA PVS +T
Sbjct: 182 TAGTTVA---KQSYALPARPDLSGGMGTPSVQPAPAPQGDV----------LPVSNSTLK 228
Query: 364 SRTSSSSVTSAS----AAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATA 419
S + + ++S A AP V + P++ PATA + + S A+
Sbjct: 229 SEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAATSSSASG 288
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 36.4 bits (84), Expect = 0.041
Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 254 SPVKKTATTTAKPAPKPAT-KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
P PA P P A + A P + + +
Sbjct: 46 KPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDP--QPVAQPPVESTP 103
Query: 313 AAPKPSAPKPAAPKKPVAAPAPK-PRPATAAPAPKPLT 349
A +A P K P PA P T P PKP+
Sbjct: 104 AGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVA 141
Score = 33.3 bits (76), Expect = 0.34
Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 1/110 (0%)
Query: 320 PKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKP 379
P P P+ P P P GV + A A+ + + +
Sbjct: 42 PLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVES 101
Query: 380 AAPRVPLSQRTSAA-KPATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
VP++ +T KP +P P KP A T
Sbjct: 102 TPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQA 151
Score = 32.2 bits (73), Expect = 0.75
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT 288
A A+ + + + PA PV A PKP P P A P T
Sbjct: 81 AGDAAAASVDPQPVAQPPVESTPAGVPV-------AAQTPKPVKPPKQPPAGAVPAKPTP 133
Query: 289 APKPAPVRKPVA 300
P+P PV +P A
Sbjct: 134 KPEPKPVAEPAA 145
Score = 31.4 bits (71), Expect = 1.4
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 245 TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT 304
A P P A+ P+P P +T A P + P
Sbjct: 61 VQVVALPTQPPEGVAQEIQDAGDAAAASVD-PQPVAQPPVESTPAGVPVAAQTPKPVKPP 119
Query: 305 KTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
K + P+ P P KPVA PA P
Sbjct: 120 KQPPAG----AVPAKPTPKPEPKPVAEPAAAPTG 149
Score = 30.2 bits (68), Expect = 3.5
Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Query: 170 EVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPA 229
E V+P Q V + + AG AAAA + T P
Sbjct: 53 EPRVLPAVVQVVALPTQPPEGVAQEIQDAGD----AAAASVDPQPVAQPPVESTPAGVPV 108
Query: 230 AKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAA 282
A KP K A +P KP PKP +PA PT A
Sbjct: 109 AAQTPKP-VKPPKQPPAGAVPAKPTP---------KPEPKPVAEPAAAPTGQA 151
Score = 29.5 bits (66), Expect = 6.7
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 5/103 (4%)
Query: 334 PKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAA 393
PKP+ P P V P ++ + +A+A+ P ++ A
Sbjct: 45 PKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPA 104
Query: 394 KPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
A P P A +P T KP +
Sbjct: 105 GV--PVAAQTPKPVKPPKQPPAGAVPAKP---TPKPEPKPVAE 142
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 36.9 bits (85), Expect = 0.041
Identities = 32/169 (18%), Positives = 50/169 (29%), Gaps = 5/169 (2%)
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
TA K I + ++ A A P + A + T + +
Sbjct: 496 AKELEATAHKSEIKKIAESEFKNAGAK-TAAANIEPNCSADAA-APATKRARPETKTELE 553
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA-APAPKPLTNGVTKRPVSA 359
+ + P+ AA A A A A + L + +P
Sbjct: 554 AV--VRFPYQIRNMESPAFVHSFTSTTLAAAAGQGSDTAEALAGAIETLLTQASAQPAGL 611
Query: 360 TTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTS 408
+ A ++ T AS P AP+ P TSA T KP +
Sbjct: 612 SLPAPAVPVNASTPASTPPPLAPQEPPQPGTSAPSLETSLPQQKPVLSK 660
Score = 35.7 bits (82), Expect = 0.11
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 4/109 (3%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
T + AP A K A T T P R+ + +
Sbjct: 348 LKTASLTAPSRVLAAAAKVAVIAAPQTHTGPAD---RQRPQRPDGIPYSVPARSPMTAYP 404
Query: 320 PKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
P P P P+ + P+P+ V +P + ++
Sbjct: 405 PVPQFCGDPGLVSPYNPQSPGTSYGPEPVG-PVPPQPTNPYVMPISMAN 452
Score = 33.0 bits (75), Expect = 0.69
Identities = 41/240 (17%), Positives = 61/240 (25%), Gaps = 38/240 (15%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP-KPATKPAPKPTTAAPKSTTTAPKP 292
+ T + A A V T PA + +P P + +S TA P
Sbjct: 346 EILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPP 405
Query: 293 AP--VRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP---APKPRPATAAPAPKP 347
P P + + S P+P P P P P P A P
Sbjct: 406 VPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHE 465
Query: 348 L------------------------TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
+ + AT S + + A
Sbjct: 466 RKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKSEIKKIAESEFKNAGAKTAA 525
Query: 384 VPLSQRTSAAKPATKPATAKPSTTSKPTTAS------KPATATRPATTTSKPATTTSTDI 437
+ SA A PAT + +K + + PA S +TT +
Sbjct: 526 ANIEPNCSADAAA--PATKRARPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAAAA 583
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 36.6 bits (84), Expect = 0.045
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
+T A+ T P T P + A P A S
Sbjct: 101 STPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNPESV 160
Query: 320 PKPAAPKKPVAAPAPK--PRPATAAPAPKPLTNG 351
P AA + A P+ ++A KPL +G
Sbjct: 161 PTRAARETTEANRPTATPPQSSSALVITKPLRSG 194
Score = 30.4 bits (68), Expect = 4.0
Identities = 29/116 (25%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 195 AKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAIS 254
A + GA G + V +A T P A P P T + A P
Sbjct: 85 ANLQGARDAGLVPVELSTPVARAPQVIDTAPPNDVATPV--PSVPEATAEAAAKAGPQDD 142
Query: 255 PVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK-PAPVRKPVASTITKTATS 309
A PA P PT AA ++T P + A ITK S
Sbjct: 143 EADGEQADEA-----PAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRS 193
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 36.8 bits (85), Expect = 0.047
Identities = 31/248 (12%), Positives = 79/248 (31%), Gaps = 23/248 (9%)
Query: 185 EESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTK 244
+ ++ + G+++ ++ + P + P S ++ T
Sbjct: 367 DSQSSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTP 426
Query: 245 TTTAAKPAISPVKKTA---TTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV------ 295
+ + + +++ T + P KP+ + + +P S+T P P
Sbjct: 427 GSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEES 486
Query: 296 -----------RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
K S+I + S P+ +PA+ ++ + +P
Sbjct: 487 GHLPNNPFFNKLKLTLSSIPPLSPRQ-SIITLPTPSRPASRISSLSLRLGSYSGSIVSPP 545
Query: 345 PKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKP 404
P P V+++ + + S R+P + + +++ +++ P
Sbjct: 546 PYPTL--VSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLP 603
Query: 405 STTSKPTT 412
S T
Sbjct: 604 SPTGVIGF 611
Score = 31.8 bits (72), Expect = 1.6
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 351 GVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATA-------K 403
P S+ T S + SSSV V + + + + K
Sbjct: 385 SDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIK 444
Query: 404 PSTTSKPTTASKPATATRPATTTSKPATT 432
P+ S P + + T+ +T
Sbjct: 445 PTLASIPDEKPSNISVFEDSETSPNSSTL 473
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 35.2 bits (81), Expect = 0.047
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 233 ASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKP 292
A K LA T P + A T P PA PAP AP + P
Sbjct: 75 ARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134
Query: 293 A-PVRKP 298
P R P
Sbjct: 135 PQPPRAP 141
Score = 32.9 bits (75), Expect = 0.24
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P T P A P T T+T V AP + P PAA P P P PR
Sbjct: 81 PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQP-PR 139
Score = 32.5 bits (74), Expect = 0.39
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
AP+ P T+ A P+ P + P P A A P PA A P P
Sbjct: 80 APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134
Score = 31.0 bits (70), Expect = 1.2
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
A K AP P A P P P +PAP T T P A+ + + +
Sbjct: 75 ARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134
Query: 379 PAAPRVP 385
P PR P
Sbjct: 135 PQPPRAP 141
Score = 30.2 bits (68), Expect = 1.8
Identities = 15/52 (28%), Positives = 18/52 (34%)
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
RK +A V+ S P + PA P PA A PAP
Sbjct: 76 RKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAA 127
Score = 29.8 bits (67), Expect = 2.9
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 249 AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
A+ ++P+ A +P P + P ++T A PAP A
Sbjct: 75 ARKILAPLTPPAPP--EPVTPPTAQSPAPAVPTPPPTSTPAVPPAP----------AAAV 122
Query: 309 STVSAAPKPSAPKPAAPKKP 328
+AAP PS P P P+ P
Sbjct: 123 PAPAAAPPPSDP-PQPPRAP 141
Score = 28.6 bits (64), Expect = 6.8
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTT 280
P +P + P A++ T P +P A A PAP A P+ P
Sbjct: 84 PPAPPEPVTPPTAQSPAPAVPTPP-PTSTPAVPPAPAAAVPAPAAAPPPSDPPQP 137
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 36.7 bits (84), Expect = 0.049
Identities = 71/333 (21%), Positives = 106/333 (31%), Gaps = 53/333 (15%)
Query: 136 AVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAA 195
A D I + K V + N+ T +K P ++ V E E E+S +++ L
Sbjct: 34 AGDTLWGIAQSKGTTVDAIKKANNLTTDKIVPGQKLQV--NEVAAAEKTEKSVSATWLNV 91
Query: 196 KVAGAL---VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
+ + ++ + G V V+ T + K K T K T+
Sbjct: 92 RSGAGVDNSIITSIKGGTKVTVE-TTESNGWHKITYNDGKTGFVNGKYLTDKVTSTPVAP 150
Query: 253 ISPVKKTATTT-AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTV 311
VKK TT A PA + T+ P K PV A+T + T+
Sbjct: 151 TQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTI 210
Query: 312 SA-----------------------------APKPSAPKPAAPKKPVAAPAPKPRPATAA 342
A A K +A A PK V AP AA
Sbjct: 211 WALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQTA-NTATPKAEVKTEAPAAE-KQAA 268
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATA 402
P K TN T TT ++ ++ AAKPA PA T
Sbjct: 269 PVVKENTNTNTATTEKKETT-TQQQTAPKAPTEAAKPA--------------PAPSTNTN 313
Query: 403 KPSTTSKPTTASKPATATRPATTTSKPATTTST 435
T + T + + P+ T+ + +
Sbjct: 314 ANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTN 346
Score = 32.9 bits (74), Expect = 0.82
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 280 TAAPKSTTTAPKPA------PVRKPVASTITKTATSTVSAAPKPSAPK-PAAPKKPVAAP 332
TA PK+ PA PV K +T T T + + +APK P KP AP
Sbjct: 249 TATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAP 308
Query: 333 APKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSA 392
+ TN S T + S+++ S + A + + SA
Sbjct: 309 STNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASA 368
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 35.2 bits (82), Expect = 0.049
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 303 ITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
I++ A + V+ + +A P A P AA A PA A A G
Sbjct: 32 ISRAAAAPVAPVAQQAAAAPVAAA-PAAAAAAAAAPAAAPAAAAAEAEG 79
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 36.8 bits (85), Expect = 0.050
Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 216 KATAAKKTDKPGPAAKPASKP----LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
+T PG +K SK L + ++ T KP + T APKP
Sbjct: 202 TPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQET--SSMDTEKSSAPKPR 259
Query: 272 TKPAPKPTTAAPKSTTTA---------PKPAPVRKPVASTITKTATSTVSAAPKPSAPKP 322
PK AP TT PK + + + + S + +PKP A
Sbjct: 260 ETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPG 319
Query: 323 AAPKKPVAAPAPKPRPAT 340
+P+ P++ P
Sbjct: 320 KSPRDPLSPRPKPQSPPV 337
Score = 33.7 bits (77), Expect = 0.40
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 120 PDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQ 179
PD+ ++D+ + P + E + + P I +
Sbjct: 225 PDLPSSRDSEKTKPE------KPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEE 278
Query: 180 TVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPG-PAAKPASKPL 237
++S E S S+ A+ + + + + A A+ K P P KP S P+
Sbjct: 279 ELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPPV 337
Score = 30.6 bits (69), Expect = 4.2
Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 12/128 (9%)
Query: 233 ASKPLAKTTTTKTTTAAKPAISPV----KKTATTTAKPAPKP---ATKPAPKPTTAAPKS 285
AS L +T + K T +P K+ + + P + K P+ S
Sbjct: 188 ASVDLGRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSS 247
Query: 286 TTTA----PKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR-PAT 340
T PKP P + +T P A + + +P P+
Sbjct: 248 MDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSP 307
Query: 341 AAPAPKPL 348
A +PKPL
Sbjct: 308 KAESPKPL 315
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 35.8 bits (83), Expect = 0.059
Identities = 11/59 (18%), Positives = 20/59 (33%)
Query: 277 KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
+ + T +P PV P +T + +P+AP A + P +
Sbjct: 122 QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
Score = 34.2 bits (79), Expect = 0.23
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
T P+ST + A ++P A+T V+ + +AP PV P
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATT---AQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPV- 166
Query: 339 ATAAPAPKP 347
A APK
Sbjct: 167 TQAVEAPKV 175
Score = 32.3 bits (74), Expect = 0.73
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 232 PASKPLAKTTTTKTTTAAKPAISPVK-KTATTTAKPAPKPATKPAPKPTTAAPKSTT 287
+P A T + T + +PV+ +T P T+ P A K
Sbjct: 126 QQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182
Score = 31.6 bits (72), Expect = 1.5
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPV 299
T +T + ++ TTA+P P P T AP T PAPVR
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVT-----PPRQTTAPVQPQT---PAPVRTQP 162
Query: 300 ASTITKTATSTVSAAPKPSAPK 321
A+ +T+ APK A K
Sbjct: 163 AAPVTQAVE-----APKVEAEK 179
Score = 29.6 bits (67), Expect = 5.2
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 379 PAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIE 438
P PR + + A + TA+P + P + P PA ++PA + +E
Sbjct: 112 PQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVE 171
Query: 439 DEMNQPFTPEELEAA 453
P E E
Sbjct: 172 ----APKVEAEKEKE 182
Score = 29.6 bits (67), Expect = 6.4
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
+ A+ TTA ++P ++T P P P T A + APK
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVE----APKVE 176
Query: 294 PVRK 297
++
Sbjct: 177 AEKE 180
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 36.5 bits (84), Expect = 0.066
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 269 KPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP 328
+ AP P + P + A P+ +PA P
Sbjct: 375 RNDGGVAPSPAGSPDVKKKAPEPDLP----------QPDRHPGPAKPEAPGARPAELPSP 424
Query: 329 VAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS-------SVTSASAAKPAA 381
+AP P+ +P A AP P + + A+ S + S +P
Sbjct: 425 ASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQ 484
Query: 382 PR 383
Sbjct: 485 AS 486
Score = 36.1 bits (83), Expect = 0.089
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
+P + K A P+P KP RP + AS +
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKP--EAPGARPAELPSPASAPTPEQQP------ 434
Query: 379 PAAPRVPLSQRTSAAKPATKPATAKPS 405
P A PL + A A+ KP
Sbjct: 435 PVARSAPL-PPSPQASAPRNVASGKPG 460
Score = 32.6 bits (74), Expect = 1.0
Identities = 16/71 (22%), Positives = 21/71 (29%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P PA P K A P A P+P A P +P A
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441
Query: 286 TTTAPKPAPVR 296
+P+ + R
Sbjct: 442 LPPSPQASAPR 452
Score = 32.6 bits (74), Expect = 1.1
Identities = 30/135 (22%), Positives = 44/135 (32%), Gaps = 33/135 (24%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A PA SP K K AP+P P+P KP A
Sbjct: 381 APSPAGSPDVK------KKAPEP---DLPQPDRHPGP-----------AKPEAPGARPAE 420
Query: 308 TSTVSAAPKPSAPKPAAPKKPV-AAPAPKPRPATAAPAP------------KPLTNGVTK 354
+ ++AP P P A P+ +P A+ P NG K
Sbjct: 421 LPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRK 480
Query: 355 RPVSATTTASRTSSS 369
+PV A+++ + +
Sbjct: 481 QPVQASSSDAAQTGV 495
Score = 32.2 bits (73), Expect = 1.4
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 210 AAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPK 269
A KK +P AK A+PA P +A T + P
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAK----PEAPGARPAELPSPASAPTPEQQPPV 436
Query: 270 PATKPAPKPTTAAPKSTTTAPKP 292
+ P P A+ + KP
Sbjct: 437 ARSAPLPPSPQASAPRNVASGKP 459
Score = 29.9 bits (67), Expect = 6.8
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 370 SVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPS-TTSKPTTASKPATATRP 422
S + K AP L Q P P AKP ++P PA+A P
Sbjct: 383 SPAGSPDVKKKAPEPDLPQ------PDRHPGPAKPEAPGARPAELPSPASAPTP 430
Score = 29.5 bits (66), Expect = 9.6
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 8/120 (6%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
G A PA P K + K A+PA P+ AP P P +
Sbjct: 379 GVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVAR 438
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPK--------PSAPKPAAPKKPVAAPAPKPRP 338
+ P+P + + + + S +P AA
Sbjct: 439 SAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEG 498
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 36.4 bits (84), Expect = 0.069
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA-PAPKP 336
P S P + P AS+ VS P P PA P P A+ PAP
Sbjct: 186 IQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPI 245
Query: 337 RPATAAPAPKP 347
P AP P
Sbjct: 246 PPVIQYVAPPP 256
Score = 30.7 bits (69), Expect = 4.0
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
P P P ++ AP +++T R P S + + P A PA
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGN----RLPRVSFNPFLPGPSPAQPSAPPASIPA 242
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLT 349
P PV P P P+
Sbjct: 243 PPIPPVIQYVAPP-PVPPPQPIIPIQ 267
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 36.3 bits (83), Expect = 0.073
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 4/160 (2%)
Query: 145 EEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVG 204
E ++ ++ E L E Q+A AEE+ A+ A
Sbjct: 226 EAEDPAAAEARRREADRREAADRLREAEEAAQDAARARQAEEAAREEAARARQAEEAARE 285
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
A AA A + A + + G P A TT++ + A + + + A
Sbjct: 286 AEAAFRADEAAATSEAARDEAAGAQLAPDPSGDAAATTSE-AAGDEAAGALLGPDPSGDA 344
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPK---PAPVRKPVAS 301
+ P P P + P +P+ P P P+ +
Sbjct: 345 QDEPAPGGAPDSGTSIGGPSRAAPSPRRLFPLPSAAPLNA 384
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 36.2 bits (84), Expect = 0.073
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 214 VKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK 273
V+ TA PG A + A + T T A P K A T +
Sbjct: 190 VEVTTAGDLLP-PGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKA 248
Query: 274 PAPKPTTAAPKSTTTAPKPAP 294
+P A K+ P P
Sbjct: 249 ATGEPAANAAKAAKPEPMPDD 269
Score = 36.2 bits (84), Expect = 0.075
Identities = 24/88 (27%), Positives = 27/88 (30%)
Query: 190 SSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAA 249
S + AG L+ A A K ATAA T A A T A
Sbjct: 187 SKQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAK 246
Query: 250 KPAISPVKKTATTTAKPAPKPATKPAPK 277
K A A AKP P P +
Sbjct: 247 KAATGEPAANAAKAAKPEPMPDDQQKEA 274
Score = 34.3 bits (79), Expect = 0.29
Identities = 21/94 (22%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 260 ATTTAKPA-PKPATKP---APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
TT P A + A T A AP P K K AT A
Sbjct: 192 VTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPK-------KAATEEELIAD 244
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
A A P+P P + L
Sbjct: 245 AKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQ 278
Score = 34.3 bits (79), Expect = 0.29
Identities = 46/209 (22%), Positives = 63/209 (30%), Gaps = 15/209 (7%)
Query: 153 PTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAV 212
+ +++ T + T S EA +++A +V V A G A
Sbjct: 106 RVEGSSAVTGDDTTRTSGDQTNYSEADLFR--NPYAVLAEIAQEVGQQANVSAKGDGGAA 163
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT 272
AT A G A + P + + TTA A A+ A
Sbjct: 164 QSGPATGADG----GEAYRDPFDPDFWSKQVEVTTAGDLLPP---GQAREQAQGAKSATA 216
Query: 273 KPAPKPTTAAPKSTTTAPKPA---PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
PA AAP K A + T + + A KP P P +K
Sbjct: 217 APA-TVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKP-EPMPDDQQKEA 274
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVS 358
A A K L GVT PV
Sbjct: 275 EQLQAAIAQAIGGVAGK-LAEGVTVTPVE 302
Score = 33.1 bits (76), Expect = 0.62
Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 4/89 (4%)
Query: 366 TSSSSVTSASAAKPAAP-RVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPAT 424
+ VT+A P R SA A P K AT
Sbjct: 187 SKQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPL---PQAQPKKAATEEELIA 243
Query: 425 TTSKPATTTSTDIEDEMNQPFTPEELEAA 453
K AT + +P + +
Sbjct: 244 DAKKAATGEPAANAAKAAKPEPMPDDQQK 272
Score = 32.0 bits (73), Expect = 1.4
Identities = 21/122 (17%), Positives = 32/122 (26%), Gaps = 7/122 (5%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL-TNGVTKRPVSATTT 362
+K T + P + +A A AAP P+ T+ + A
Sbjct: 187 SKQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAK 246
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
+ T + +A AAKP K A + A P
Sbjct: 247 KAATGEPAANAAKAAKPEPMPDD------QQKEAEQLQAAIAQAIGGVAGKLAEGVTVTP 300
Query: 423 AT 424
Sbjct: 301 VE 302
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 35.7 bits (82), Expect = 0.076
Identities = 38/202 (18%), Positives = 57/202 (28%), Gaps = 19/202 (9%)
Query: 211 AVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
+ + A A T A A K + T+ A +PA P +A T++ P
Sbjct: 24 IIGIGSALKAPSTSSSEAPAS-AEKSIDLNGATQAN-AQQPAPGP--TSAENTSQDLSLP 79
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV- 329
P A+ + + + A + P A PV
Sbjct: 80 PISSTPTQGQEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVR 139
Query: 330 -AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ 388
A+ RPA P P A +++ +A+ P
Sbjct: 140 NASVPTAERPAITRPVRA----QAVSEPAVEPKAAKTATATEAKVQTASPAQTP------ 189
Query: 389 RTSAAKPATKPATAKPSTTSKP 410
A PA K A A S P
Sbjct: 190 ---ATPPAGKGAAASGQLKSAP 208
Score = 32.6 bits (74), Expect = 0.64
Identities = 39/189 (20%), Positives = 59/189 (31%), Gaps = 20/189 (10%)
Query: 200 ALVVGAA--AAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVK 257
+ +G+A A + + A+A K D G A +P T+ + T+ P+
Sbjct: 24 IIGIGSALKAPSTSSSEAPASAEKSIDLNGATQANAQQPAPGPTSAENTSQDLSL-PPIS 82
Query: 258 KTATTTAKPA--------------PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTI 303
T T +P A +P T+T P PV +
Sbjct: 83 STPTQGQEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNAS 142
Query: 304 TKTATSTVSAAPKPSAP--KPAAPKKPVAAPAPKPRP-ATAAPAPKPLTNGVTKRPVSAT 360
TA P + +PA K TA+PA P T K ++
Sbjct: 143 VPTAERPAITRPVRAQAVSEPAVEPKAAKTATATEAKVQTASPAQTPATPPAGKGAAASG 202
Query: 361 TTASRTSSS 369
S SS
Sbjct: 203 QLKSAPSSH 211
Score = 30.7 bits (69), Expect = 3.4
Identities = 36/158 (22%), Positives = 52/158 (32%), Gaps = 20/158 (12%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
A +PAP PT+A T+ P P++ST T+ P ++
Sbjct: 56 QANAQQPAPGPTSA---ENTSQDLSLP---PISSTPTQGQE-----------PLAQDGQQ 98
Query: 328 PVAAPAPKPRPATAAPAPKPLTN-GVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPL 386
V A L N VT + T + ++SV +A P
Sbjct: 99 RVEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAERPAITRPVR-- 156
Query: 387 SQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPAT 424
+Q S K A +T +K TAS T P
Sbjct: 157 AQAVSEPAVEPKAAKTATATEAKVQTASPAQTPATPPA 194
Score = 30.3 bits (68), Expect = 4.5
Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 15/143 (10%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA-PAPKPLTNGVT-----KRPVSAT 360
AT + P P + ++ P P P + V
Sbjct: 54 ATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQGQEPLAQDGQQRVEVQGDLNNAAVQP 113
Query: 361 TTASRTSSSSVTSA--SAAKPAAPR----VPLSQRTSAAKPATKPATAKPSTTSKPTTAS 414
S+ ++ +VTS + AP VP ++R + +P A ++P+ K +
Sbjct: 114 QNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAERPAITRPVRAQAVSEPAVEPKA---A 170
Query: 415 KPATATRPATTTSKPATTTSTDI 437
K ATAT T+ PA T +T
Sbjct: 171 KTATATEAKVQTASPAQTPATPP 193
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 36.5 bits (84), Expect = 0.077
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 241 TTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
TK +TAA +P+ +T+ + A P+TA T + + V
Sbjct: 336 AETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPATPRVRAVLTTQ-VH 394
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
+ V P PS P+ P +P+ P
Sbjct: 395 HCVVVKPAPAVPTTPSPSLTTALFPEAPSPSPSALP 430
Score = 33.4 bits (76), Expect = 0.67
Identities = 57/273 (20%), Positives = 83/273 (30%), Gaps = 40/273 (14%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKP--APKPATKPAPKPTTAAP 283
P P + + T T + + VK + T P+ + A K T
Sbjct: 192 PSPLGRMVNSYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRTAGKTTPTPL 251
Query: 284 KSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
K T R+ +T +P+ K + P ++
Sbjct: 252 KGMTDNTPTFLTREVETDLLT--------------SPRSVVEKNTLTTPRRVESNSSTNH 297
Query: 344 APKPLTNGVTK------RPVSAT-----TTASRTSSSSVTSASAAKPAAPRVPLSQRTSA 392
N +T AT T + T SS + ++ R PLS RTSA
Sbjct: 298 WGLVGKNNLTTPQGTVLEHTPATSEGQVTISIMTGSSPAETKASTAAWKIRNPLS-RTSA 356
Query: 393 AKPATKPATAKPSTTSKPTTASKPATATRPATTTS--------KPATTTSTDIEDEMNQP 444
AT + + T S PAT A T+ KPA T +
Sbjct: 357 PAVRIASATFRGLEKNPSTAPSTPATPRVRAVLTTQVHHCVVVKPAPAVPTTPSPSLTTA 416
Query: 445 FTPEELEAAIKSGLITTPGRDNIHYPMIENLPD 477
PE S PG+ ++H P E PD
Sbjct: 417 LFPEAPSP---SPSALPPGQPDLH-PKAEYPPD 445
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 36.2 bits (83), Expect = 0.080
Identities = 34/166 (20%), Positives = 42/166 (25%), Gaps = 15/166 (9%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKK------ 258
AAA AA A K AA+ A P +++ T K +S KK
Sbjct: 300 AAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVP 359
Query: 259 ----TATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAA 314
A KP P P P P A P AP + +
Sbjct: 360 PLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKL 419
Query: 315 PKPSAPKPAA-----PKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
P P K A A L K+
Sbjct: 420 PVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKK 465
Score = 30.0 bits (67), Expect = 5.5
Identities = 31/186 (16%), Positives = 49/186 (26%), Gaps = 16/186 (8%)
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPV 299
T + A A++ TA A A A P+ + P
Sbjct: 290 QPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQS-------------PATPSS 336
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSA 359
+ + VS+A K + P P+ A P P P L P
Sbjct: 337 SLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGL 396
Query: 360 ---TTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
T +S K L + +P+ + T++ +
Sbjct: 397 VAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAA 456
Query: 417 ATATRP 422
A A P
Sbjct: 457 ALALEP 462
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 35.8 bits (82), Expect = 0.083
Identities = 31/134 (23%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 248 AAKP-AISPVKKTATTTAKPAPKPATKPAPKPTT-AAPKSTTTAPKPAPVRKPVASTITK 305
+K P + +P KP P P AP T P
Sbjct: 260 ESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGP----------- 308
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR-PATAAPAPKPLTNGV-TKRPVSATTTA 363
AA P P P P P A P P P T V RPV T
Sbjct: 309 EPAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATPAVPRARPVIVGTGI 368
Query: 364 SRTSSSSVTSASAA 377
+ + + V +A A
Sbjct: 369 AAAAIACVAAAGAV 382
Score = 29.2 bits (65), Expect = 8.8
Identities = 24/112 (21%), Positives = 30/112 (26%), Gaps = 16/112 (14%)
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
K P PA +PAP P KP V R +
Sbjct: 259 EESKGYEPPPAPSG---GSPAPPGDD---RPEAKPEPGPVEDGA------PGRETGGEGE 306
Query: 373 SASAAKP--AAPRVPLSQRTSAAKPATKPA--TAKPSTTSKPTTASKPATAT 420
A AA P A A +P + + T P T + PA
Sbjct: 307 GPEPAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATPAVPR 358
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 36.2 bits (83), Expect = 0.086
Identities = 42/202 (20%), Positives = 56/202 (27%), Gaps = 37/202 (18%)
Query: 284 KSTTTAPKPAPVRKPVASTITKTA--------TSTVSAAPKPS--APKPAAPKKPVAA-- 331
+ T P P P PV T+ KT+ + P PS P P
Sbjct: 414 RKPRTLPWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEH 473
Query: 332 -------PAPKPRPATAAPAPKPLTNGVTKRPVSATTTAS---------RTSSSSVTSAS 375
P P PAP P ++R A T+ +
Sbjct: 474 TTVILHQPPQSPPTVAIKPAPPP-----SRRRRGACVVYDDDIIEVIDVETTEEEESVTQ 528
Query: 376 AAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
AKP QR+ + P PS P P P+ T T +
Sbjct: 529 PAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKA--SPPVMAPPS--TGPRVMATPS 584
Query: 436 DIEDEMNQPFTPEELEAAIKSG 457
+M P T +A K G
Sbjct: 585 TGPRDMAPPSTGPRQQAKCKDG 606
Score = 34.6 bits (79), Expect = 0.23
Identities = 39/219 (17%), Positives = 66/219 (30%), Gaps = 12/219 (5%)
Query: 230 AKPASKPLA--KTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT 287
AKP K + + + A P +SP + + P P + T +
Sbjct: 530 AKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRD 589
Query: 288 TAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
AP R+ A+ P SAP+ AP + + P PK
Sbjct: 590 MAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKS 649
Query: 348 LTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTT 407
R S + T ++ +P+ +P S + A + ++ S
Sbjct: 650 FWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPS--WLP-SVFVLPSVDAGRAQPSEESHL 706
Query: 408 SKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFT 446
S + T+P + +P D D P
Sbjct: 707 S-------SMSPTQPISHEEQPRYEDPDDPLDLSLHPDQ 738
Score = 33.9 bits (77), Expect = 0.45
Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 20/234 (8%)
Query: 226 PGPAAKPASKPLAKTTTTK------TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPT 279
P P P + L KT+ +T +P S A P T
Sbjct: 422 PTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEHTTVILHQP 481
Query: 280 TAAPKSTTTAPKPAPVRKPVASTITKT-----ATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
+P + P P P R+ + + + + S +PA P + V
Sbjct: 482 PQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVETTEEEESVTQPAKPHRKVQDGFQ 541
Query: 335 KPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAK 394
+ P ++ P +S V + + P P + A
Sbjct: 542 RSGRRQKRATPPKVSPSDRGPP---------KASPPVMAPPSTGPRVMATPSTGPRDMAP 592
Query: 395 PATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPE 448
P+T P P + A P+ E + Q P+
Sbjct: 593 PSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPK 646
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 35.9 bits (82), Expect = 0.089
Identities = 31/181 (17%), Positives = 70/181 (38%), Gaps = 9/181 (4%)
Query: 254 SPVKKTATTTAKPAPKPATKPAPKPTTA---APKSTTTAPKPAPVRKPVASTITKTATST 310
P ++ +TT P P + + + + +PA + + + +
Sbjct: 13 GPANRSQSTTPSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRSATP 72
Query: 311 ---VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTS 367
++ P S+ + + P +P+ P P+P + + P G + V T++ +R
Sbjct: 73 PARLAKTPSSSSSQTSTPSQPLPRPLPRPTQSAGRNSILP-GPGNSLSQVPRTSSPARAL 131
Query: 368 SSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTS 427
+S S + + R+P Q + P +K A+++P +P + + P S
Sbjct: 132 LASSGSQHKTQKSPVRIPFMQNPAKPPPLSKNASSRPR--PEPGSRGRAGMNGGPGARGS 189
Query: 428 K 428
+
Sbjct: 190 R 190
Score = 29.7 bits (66), Expect = 7.4
Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 16/179 (8%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISP-------------VKKTATTTAKPAPKPAT 272
PGPA + S +K T + P SP K + P P+ AT
Sbjct: 12 PGPANRSQSTTPSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRSAT 71
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS---APKPAAPKKPV 329
PA T + S+ T+ P+ +P+ +++ P S P+ ++P + +
Sbjct: 72 PPARLAKTPSSSSSQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTSSPARAL 131
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ 388
A + +P P K P + +SR + A P S+
Sbjct: 132 LASSGSQHKTQKSPVRIPFMQNPAKPPPLSKNASSRPRPEPGSRGRAGMNGGPGARGSR 190
Score = 29.3 bits (65), Expect = 7.6
Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 28/204 (13%)
Query: 220 AKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA--KPAPKPATKPAPK 277
+ P AK S +++++T+T ++P P+ + + P P +
Sbjct: 67 PRSATPPARLAKTPS-----SSSSQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQV 121
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P T++P A + + KT S V + KP P A+ P+P
Sbjct: 122 PRTSSPARALLAS---------SGSQHKTQKSPVRIPFMQNPAKP-PPLSKNASSRPRPE 171
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA---------AKPAAPRVPLSQ 388
P + A G + AS SS S + S P R S+
Sbjct: 172 PGSRGRAGMNGGPGARGSRLELVRMASAKSSGSESDRSGFRRQLTFIKESPGTLRRRRSE 231
Query: 389 RTSA--AKPATKPATAKPSTTSKP 410
+SA +++PA+ + S + P
Sbjct: 232 LSSAESLASSSQPASPRRSRPALP 255
>gnl|CDD|218116 pfam04503, SSDP, Single-stranded DNA binding protein, SSDP. This
is a family of eukaryotic single-stranded DNA binding
proteins with specificity to a pyrimidine-rich element
found in the promoter region of the alpha2(I) collagen
gene.
Length = 293
Score = 35.5 bits (81), Expect = 0.096
Identities = 47/260 (18%), Positives = 73/260 (28%), Gaps = 45/260 (17%)
Query: 182 ESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTT 241
E + E+ A D +A A + V+G G + G + P + +T
Sbjct: 1 EHSSEAKAFHDYSAAAAPSPVLGNMPPGDGMPQGPDPPGFFQGAGGKQHQQKKTPQSGST 60
Query: 242 TTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAS 301
T ++P +SP P+P P P P +P+
Sbjct: 61 PQMQNTTSQPFMSP---------------RYPGGPRPPLRMP---NQPPGGVPGSQPL-- 100
Query: 302 TITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
+ P+ + P P P P G RP
Sbjct: 101 ---------LPGGMDPTVRQQGHPNMGGPMQRMTP-PRGMKSLDGPQNYGGGMRP----- 145
Query: 362 TASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR 421
S PA P + + P A + P ++S P + P
Sbjct: 146 ----------PPNSLLGPAMPGMNMGPGLGRPWPNPISANSIPYSSSSPGEYTGPPGGGG 195
Query: 422 PATTTSKPATTTSTDIEDEM 441
P T P+ ST+ D M
Sbjct: 196 PPGTPIMPSPADSTNSSDNM 215
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 34.9 bits (81), Expect = 0.11
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
A+ A KK + P + PKP K A KP P PV+ T
Sbjct: 111 QAQRAEQQAKKREAA-GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Query: 308 TSTVS 312
V
Sbjct: 170 GQAVK 174
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 35.0 bits (80), Expect = 0.13
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 366 TSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATT 425
T +++ T+ S+ K AP+ T P +KP P +T P T +T
Sbjct: 25 TQAANATTPSSTKVEAPQST-PPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTK 83
Query: 426 TSKPATTTSTDIEDEMNQPF 445
P + T+ + E+N F
Sbjct: 84 VETPQSPTTKQVPTEINPKF 103
Score = 33.5 bits (76), Expect = 0.38
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR----PATAAPAPKPLTNGVTK 354
V +T T+ A +T ++ K AP+ P V AP KP P+T AP+ N T
Sbjct: 20 VITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTP 79
Query: 355 RPVSATTTASRTSSSSVT 372
T S T+ T
Sbjct: 80 SSTKVETPQSPTTKQVPT 97
Score = 33.1 bits (75), Expect = 0.58
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 239 KTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKP 298
K TT T+ A ++ T TT A A P++ P + P + AP+ P
Sbjct: 2 KITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATT 61
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
ST + T +A PS+ K P+ P P
Sbjct: 62 PPSTKVEAPQQTPNAT-TPSSTKVETPQSPTTKQVPT 97
Score = 30.8 bits (69), Expect = 2.5
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATK---PAPKPTTAAPKSTTTAP 290
S L TT TT + A + + A + P+TK P KP P ST
Sbjct: 10 SLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVE- 68
Query: 291 KPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
AP + P A+T + T T + P PK
Sbjct: 69 --APQQTPNATTPSSTKVETPQSPTTKQVPTEINPK 102
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 34.9 bits (80), Expect = 0.14
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP---SAPKPAAPKKPVAAP 332
+ + +P + P+P P R P AS + A P +A A ++P P
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCP 63
Query: 333 A-------PKPRPA---TAAPAPKPL 348
A PRP APA P
Sbjct: 64 AGVTFSSSAPPRPPLGLDDAPAATPP 89
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 35.3 bits (81), Expect = 0.14
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 241 TTTKTTTAAKPAISPVKKTA-TTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPV 299
TT +P ++P A P PA PA P T P+P P P
Sbjct: 307 TTVDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPD 366
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKP 328
A+ T P PA P +P
Sbjct: 367 ANPDT-------DGQPGTRPDSPAVPDRP 388
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 34.4 bits (78), Expect = 0.14
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 3/190 (1%)
Query: 145 EEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVG 204
+E E + T + A++E P + + + E +E+ A+ + A K G
Sbjct: 37 KENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEG 96
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
AA A A + PGPAA + P A +++ +A PA K A
Sbjct: 97 AAEAKAEPPKASDPEQEPAAAPGPAAGGEA-PKASEASSQPAESAAPAKEEEKSKEEGEA 155
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAA 324
K PA + AAP S + + A S+ + A P+A PA
Sbjct: 156 KKTEAPAAAAQETKSDAAPASDSKPSSSEAAPSSKETPAATEAPSSTAKASAPAA--PAE 213
Query: 325 PKKPVAAPAP 334
KP APA
Sbjct: 214 EVKPSEAPAA 223
Score = 30.6 bits (68), Expect = 2.9
Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 6/165 (3%)
Query: 217 ATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAP 276
TA K +K G A+K A + T A A K + P +PA P P
Sbjct: 65 DTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEA----KAEPPKASDPEQEPAAAPGP 120
Query: 277 KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
APK++ + +PA P P+A K AAPA
Sbjct: 121 AAGGEAPKASEASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQET--KSDAAPASDS 178
Query: 337 RPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAA 381
+P+++ AP S+T AS ++ + + PAA
Sbjct: 179 KPSSSEAAPSSKETPAATEAPSSTAKASAPAAPAEEVKPSEAPAA 223
Score = 29.0 bits (64), Expect = 8.2
Identities = 53/215 (24%), Positives = 78/215 (36%), Gaps = 21/215 (9%)
Query: 215 KKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKP 274
KKA A ++ P ++ A+TT K KP K T K K K
Sbjct: 23 KKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPD----KDAQDTANKTEEKEGEKE 78
Query: 275 APKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP-A 333
A APK+ + A K + PAA P A A
Sbjct: 79 AAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQE------------PAAAPGPAAGGEA 126
Query: 334 PKPRPATAAPAPKPLTNGV---TKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRT 390
PK A++ PA +K A T + +++ T + AA PA+ P S
Sbjct: 127 PKASEASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQETKSDAA-PASDSKPSSSEA 185
Query: 391 SAAKPATKPATAKPSTTSKPTTASKPATATRPATT 425
+ + T AT PS+T+K + + PA +P+
Sbjct: 186 APSSKETPAATEAPSSTAKASAPAAPAEEVKPSEA 220
>gnl|CDD|177577 PHA03292, PHA03292, envelope glycoprotein I; Provisional.
Length = 413
Score = 34.9 bits (80), Expect = 0.15
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 10/146 (6%)
Query: 272 TKPAPKPTTAAPKSTTT---APKPAPVRKPVASTITKTATS----TVSAAPKPSAPKPAA 324
T P P+PTTA P+ P P + ST +++ +S +A P P+
Sbjct: 171 TVPDPEPTTARPEPAAGYVATPTPRYLNAVTTSTYSRSMSSQPAGAATATPTPTLDTGLT 230
Query: 325 PKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRV 384
P A +P T T TT + T +T S P
Sbjct: 231 TVAPPNETVVTGETALLCHWFQPSTRVPTLYLHLLGTTGNLTEDVLLTEDSEILRTPPPD 290
Query: 385 PLSQRTSAAKPATKPATAKPSTTSKP 410
P +S + A ST+ K
Sbjct: 291 P---SSSRSPGAGDDFKQTNSTSPKR 313
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 33.1 bits (76), Expect = 0.15
Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
P P P P + P +P A P+P P PA P
Sbjct: 37 PDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAA----------PPPDPEPPVPGPAGP 86
Query: 326 KKPVAAPAPKPRPATAAPAP 345
P+A PAP +P P P
Sbjct: 87 PSPLAPPAPARKPPLPPPRP 106
Score = 29.6 bits (67), Expect = 1.9
Identities = 13/65 (20%), Positives = 17/65 (26%)
Query: 289 APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
P P + T + P +PAAP P P P + AP
Sbjct: 36 HPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAP 95
Query: 349 TNGVT 353
Sbjct: 96 ARKPP 100
Score = 28.5 bits (64), Expect = 5.9
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 301 STITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
ST+ ST + S P+ A P P P P++ P S
Sbjct: 13 STLYTRTWSTSGFSSCFSPPESAHP---DDPPPVGDPRPPVVDTPPPVSAVWVLPPPSE- 68
Query: 361 TTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKP 399
+ PA P PL+ A KP P
Sbjct: 69 ----PAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPP 103
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 35.3 bits (80), Expect = 0.15
Identities = 59/310 (19%), Positives = 91/310 (29%), Gaps = 1/310 (0%)
Query: 93 AHTEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVT 152
A EK E SE E D +P + A ++ ++ VT
Sbjct: 15 AKAEKPEEDSESSSEDSDSEEEMPAAKNPPQAKPSGKSPQVKAASAPAKESPQKGAPPVT 74
Query: 153 PTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAV 212
P + E +A T S A + V A+
Sbjct: 75 PGKAGPAAAQAGEEEAKSSEEESDSEGETPTAATLTTSPAQAKPLGKNSQVRPASTVTPG 134
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT 272
K K G AA K ++++ + + +P + ++ +PA+
Sbjct: 135 PSGKGANLPCPQKAGSAAVQVGKQEDSESSSEEESDSDGPGAPAQAKSSGKL-LQARPAS 193
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP 332
PA P A T +S + + AA + KPA A
Sbjct: 194 GPAKGPPQKAGPVATQVKAERGKEDSESSEESSDSEEEAPAAMTAAQAKPALKTPQTKAS 253
Query: 333 APKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSA 392
K P T A P T P A S +SS A + S+ + +
Sbjct: 254 PRKGTPITPTSAKVPPVRVGTPAPRKAGAVTSPACASSPALARGTQRPDEDSSSSEESES 313
Query: 393 AKPATKPATA 402
+ T PATA
Sbjct: 314 EEEGTAPATA 323
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 34.7 bits (79), Expect = 0.15
Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 5/148 (3%)
Query: 182 ESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGP-----AAKPASKP 236
+ E + +L A+ + G V A++ A
Sbjct: 78 KPEERWSYIEELEAREVLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLA 137
Query: 237 LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR 296
A + T A K + A T T+ A + PK
Sbjct: 138 TAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAET 197
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAA 324
+ + I + + KP + A
Sbjct: 198 QSNSKPIETAPKADKADKTKPKPKEKAE 225
Score = 31.6 bits (71), Expect = 1.4
Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 15/184 (8%)
Query: 246 TTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS----------TTTAPKPAPV 295
T + + + T P P+ + + V
Sbjct: 49 TESKQANEPETLQPKNQTENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGV 108
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
+ T + A +A K A A + R TA P+ ++
Sbjct: 109 EESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQK 168
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
+ +S V A + A P+ ++ S +KP A + +KP K
Sbjct: 169 T----PVETEKIASKVKEAKQKQKALPKQT-AETQSNSKPIETAPKADKADKTKPKPKEK 223
Query: 416 PATA 419
A
Sbjct: 224 AERA 227
Score = 29.7 bits (66), Expect = 5.6
Identities = 21/122 (17%), Positives = 31/122 (25%), Gaps = 9/122 (7%)
Query: 231 KPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT-- 288
+ + + + TA A A + A S T
Sbjct: 87 EELEAREVLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVA 146
Query: 289 --APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK-----KPVAAPAPKPRPATA 341
A K +KP + + + V S K A K K A +P
Sbjct: 147 VEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIET 206
Query: 342 AP 343
AP
Sbjct: 207 AP 208
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 34.6 bits (80), Expect = 0.16
Identities = 32/155 (20%), Positives = 47/155 (30%), Gaps = 29/155 (18%)
Query: 261 TTTAKPAPKPA-TKPAPKPTT---AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK 316
AP A A +P+ P + P+ + P A P
Sbjct: 68 VHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQV------------PP 115
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA 376
AP+PA P AP P +PA +PL V+ + A + +
Sbjct: 116 QHAPRPAQP-----APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQP 170
Query: 377 AKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPT 411
A+P A P +P +PA K
Sbjct: 171 AEPVAAPQP--------EPVAEPAPVMDKPKRKEA 197
Score = 33.5 bits (77), Expect = 0.37
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 212 VAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
V V + A + AA+P+ +P + + P +
Sbjct: 66 VRVHRVNHAPANAQEHEAARPS-----------PQHQYQPPYASAQPRQPVQQPPEAQVP 114
Query: 272 TKPAPKPTTAAPKSTTTAPK----PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
+ AP+P AP+ P+++PV+ + A V +AP+P+ P +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVA-PAPQPVHSAPQPAQQ-AFQPAE 172
Query: 328 PVAAPAPKPRPATAAPAP 345
PVAAP +P P A PAP
Sbjct: 173 PVAAP--QPEPV-AEPAP 187
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 35.2 bits (80), Expect = 0.17
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 17/155 (10%)
Query: 162 AEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAK 221
A T + +P +P++A + A S A++ +A V+ AA + + A+K
Sbjct: 321 AGAHTHAAAMPAVPEQA---DDAARSPATTPVA-------VIRAAHVEHGLDKGEPRASK 370
Query: 222 KTDKPGPAA-KPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTT 280
+KP A KP K K + KT+ K+ + +P + A T
Sbjct: 371 PAEKPAAATDKPPEKASDKPSPEKTSEKTP------DKSHEKQLDKSSEPVAEKALDKTA 424
Query: 281 AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
P + P R P A + +A ++AAP
Sbjct: 425 DKPDAAARLPAETADRPPRARDASSSAEPDLAAAP 459
Score = 33.6 bits (76), Expect = 0.41
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 18/175 (10%)
Query: 177 EAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKP 236
E++ + + + + A A A A A A A + D A PA+ P
Sbjct: 292 ESRAAQLRADDAKAGETKAGEARASADAKAGAHTHAAAMPAVPEQADDA---ARSPATTP 348
Query: 237 LAKTTTTKTTTAAKP----AISPVKKTATTTAKPAPKPATKPAPK------PTTAAPKST 286
+A A P +K A T KP K + KP+P+ P + K
Sbjct: 349 VAVIRAAHVEHGLDKGEPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQL 408
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
+ +P + KTA +AA P+ P+ A+ + +P A A
Sbjct: 409 DKSSEPVAEKAL-----DKTADKPDAAARLPAETADRPPRARDASSSAEPDLAAA 458
Score = 31.3 bits (70), Expect = 2.6
Identities = 37/149 (24%), Positives = 50/149 (33%), Gaps = 4/149 (2%)
Query: 203 VGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTA---AKPAISPVKKT 259
G AG A A A A T A P A + T A A + K
Sbjct: 305 AGETKAGEARASADAKAGAHTHAAAMPAVPEQADDAARSPATTPVAVIRAAHVEHGLDKG 364
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
+KPA KPA P A+ K + K + K++ A +A
Sbjct: 365 EPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTA 424
Query: 320 PKP-AAPKKPVAAPAPKPRPATAAPAPKP 347
KP AA + P PR A+ + +P
Sbjct: 425 DKPDAAARLPAETADRPPRARDASSSAEP 453
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 33.9 bits (78), Expect = 0.18
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 380 AAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
+ P TS++ P+ TA ST + PT ++ T T P+ T ++ ATTT +
Sbjct: 73 TSATPPKLTTTSSS-PSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVST 128
Score = 29.3 bits (66), Expect = 7.2
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTAT---TTAKPAPKPATKPAPKPTTAAPKSTTTAP 290
S P TTT T+T P +S T T T T PT + T
Sbjct: 85 SSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTE-EATTTVSTETPTEGGSSAATDPS 143
Query: 291 KPAPVRKPV 299
K RK V
Sbjct: 144 KNLLERKEV 152
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 33.3 bits (76), Expect = 0.19
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATA-APAPKPLTNGVTKRPV 357
+A + P PA P AP P A APAP V P+
Sbjct: 46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPM 91
Score = 30.2 bits (68), Expect = 2.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 252 AISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAS 301
+S V++ T A PAP PA AP P A AP PA + V +
Sbjct: 44 DLSAVQEQVPTPA-PAPAPAVPSAPTPVAPAA----PAPAPASAGENVVT 88
Score = 29.8 bits (67), Expect = 3.1
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 298 PVASTITKTATSTVSAAP-KPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
+++ + T + AP PSAP P AP P APA AP P
Sbjct: 44 DLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 34.7 bits (80), Expect = 0.19
Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 9/148 (6%)
Query: 173 VIPQEAQTVESAEESTASSDLAAKVAGAL----VVGAAAAGAAVAVKKATAAKKTDKPGP 228
P A V + A + + A VA +L GAA AGA A A+ A G
Sbjct: 273 GPPIAAGLVIGGPQVGAGA-VGAGVAISLKATGAAGAALAGARGATAGASLASSVTALGT 331
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT 288
+ A+ + + + A + V + AK A + + A +
Sbjct: 332 SMASAAASAFASGRKGSGSGAFGTAAGVGDVKSPGAKAAMRTLGRAAGDTGVSVASGVGQ 391
Query: 289 APKPAPVRKPVASTITKTA-TSTVSAAP 315
APK A A+ + A + V AAP
Sbjct: 392 APKSAG---GSAAGKSAVAKATGVQAAP 416
Score = 34.3 bits (79), Expect = 0.26
Identities = 40/162 (24%), Positives = 46/162 (28%), Gaps = 33/162 (20%)
Query: 194 AAKVAGALVVGAAAAGAAVAVK-KATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
A V G VGA A GA VA+ KAT A G A LA + T T+ A A
Sbjct: 278 AGLVIGGPQVGAGAVGAGVAISLKATGAAGAALAGARGATAGASLASSVTALGTSMASAA 337
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
S + A A V S K A T+
Sbjct: 338 ASAFASGRKGSGSGAFGTAAG----------------------VGDVKSPGAKAAMRTLG 375
Query: 313 AAP----------KPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
A APK A + K AAP
Sbjct: 376 RAAGDTGVSVASGVGQAPKSAGGSAAGKSAVAKATGVQAAPG 417
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 34.8 bits (80), Expect = 0.21
Identities = 14/74 (18%), Positives = 23/74 (31%)
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
+ + P ++P +T T T T+T + P+ K K A
Sbjct: 228 ESDIEQISINSENIQRINSQPSKRPNNTTTTTTTTTTTTFQPRTRKRKSIDDHKLSLNQA 287
Query: 334 PKPRPATAAPAPKP 347
P+ P P
Sbjct: 288 PEKFKNNTKPDDDP 301
Score = 33.3 bits (76), Expect = 0.70
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 231 KPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAP 290
+P+ +P TTTT TTT K+ + K + A P P +
Sbjct: 247 QPSKRPNNTTTTTTTTTTTTFQPRTRKRKSIDDHKLSLNQA--PEKFKNNTKPDDDPQSD 304
Query: 291 KP 292
Sbjct: 305 FS 306
Score = 31.3 bits (71), Expect = 2.3
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 359 ATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPAT 418
TT + T++++ T PR + K + A K +KP
Sbjct: 253 NNTTTTTTTTTTTTFQ-------PRTRKRKSIDDHKLSLNQAPEKFKNNTKPDDDP---Q 302
Query: 419 ATRPATTTSKPATTTSTDIEDEMNQPFTPEE 449
+ + K + I++
Sbjct: 303 SDFSDKGSRKSGSLKDVRIDNISCSVSHNGV 333
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 34.3 bits (79), Expect = 0.24
Identities = 24/127 (18%), Positives = 33/127 (25%), Gaps = 12/127 (9%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
P P P+P P + PA T T + +A P + PA
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAG-----DQQQHNTPTGSPAANPPATFALPA 105
Query: 324 APKKPVAAPAPKP-----RPA--TAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA 376
P P P P T PA PL +R + +S +
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 377 AKPAAPR 383
Sbjct: 166 QSAQKND 172
Score = 29.3 bits (66), Expect = 9.1
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA 376
P P P AP P P P+P A + L G T T S ++ T A
Sbjct: 48 PWDPSPQAPPPVAQLPQPLPQPP-PTQALQALPAGDQ--QQHNTPTGSPAANPPATFALP 104
Query: 377 AKPAAPRV 384
A PA P +
Sbjct: 105 AGPAGPTI 112
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 34.7 bits (80), Expect = 0.26
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSV 371
A P +AP P+ + + +PA AA AP P N P +
Sbjct: 270 AQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPN-----PPATPPEPPARRGRGS 323
Score = 33.2 bits (76), Expect = 0.69
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA-PKPR 337
T A + PAP R + +V++ P +A PA P P A P P R
Sbjct: 264 TWADAAAQPATAAPAPSRMTDT-----NDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318
Query: 338 PATAAPA 344
+ A
Sbjct: 319 RGRGSAA 325
Score = 30.8 bits (70), Expect = 3.3
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
TA S + K + AA AP P P A P+P
Sbjct: 274 TAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEP 315
Score = 30.8 bits (70), Expect = 3.4
Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT 306
T A A P + + +P AA AP P P P
Sbjct: 264 TWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAA---APAPPPNP---PATPPEPPA 317
Query: 307 ATSTVSAA 314
SAA
Sbjct: 318 RRGRGSAA 325
Score = 30.5 bits (69), Expect = 4.8
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 10/125 (8%)
Query: 157 TNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGAL------VVGAAAAGA 210
T+SE L+ + P E ++ A + +A + A AL + GA
Sbjct: 200 TSSEAVRNLDELARAHLNPAEIDALKHAPLVAPHARIAEQ-ARALGFDRITLTGAGDERI 258
Query: 211 AVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
A T A +P AA PA + T +K+ T+ A + P+P
Sbjct: 259 VRAFL--TWADAAAQPATAA-PAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEP 315
Query: 271 ATKPA 275
+
Sbjct: 316 PARRG 320
Score = 30.1 bits (68), Expect = 5.4
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 17/65 (26%)
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPAT 397
PATAAPAP +T S SVTS AA AAP P + A P
Sbjct: 272 PATAAPAPSRMT--------------DTNDSKSVTSQPAAAAAAPAPPPNP---PATPPE 314
Query: 398 KPATA 402
PA
Sbjct: 315 PPARR 319
>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 300
Score = 34.0 bits (78), Expect = 0.28
Identities = 18/92 (19%), Positives = 22/92 (23%), Gaps = 9/92 (9%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA---TSTVSAAP----KPS 318
+P A K A P PV A+ + A A P P
Sbjct: 3 HVLEPRPTQAAKADAATVPEQDVMPGAEPVSG-QANEQKRIAEEAHPQPVARPSSTDDPV 61
Query: 319 APKPAAPKKPVAAPAPKPRPATAAP-APKPLT 349
P P +P P P L
Sbjct: 62 TPTEGKPVRPKGLPILALAGPVGELGQPMDLP 93
Score = 29.4 bits (66), Expect = 7.0
Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 4/118 (3%)
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAP 283
D +P A T P PV A + A + +P +P++
Sbjct: 1 DIHVLEPRPTQAAKADAATVPEQDVM-PGAEPVSGQANEQKRIAEEAHPQPVARPSSTDD 59
Query: 284 KSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
T T KP + + P P PA P P+A P P P
Sbjct: 60 PVTPTEGKPVRPKGLPILALAGPVGE--LGQPMD-LPAPANPGDPLALPEPPSPPTKP 114
>gnl|CDD|135173 PRK04654, PRK04654, sec-independent translocase; Provisional.
Length = 214
Score = 33.6 bits (76), Expect = 0.30
Identities = 33/128 (25%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT 288
+A P + PL + A A + V A PAP P A +
Sbjct: 104 SATPVATPL------ELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAP 157
Query: 289 APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
AP V P T AA PSAP PV A A+P P
Sbjct: 158 APHQTLVPAP-----HDTIVPAPHAAHLPSAPATPVSVAPVDAGTS------ASPTPSEP 206
Query: 349 TNGVTKRP 356
T K+P
Sbjct: 207 TKIQEKQP 214
Score = 30.6 bits (68), Expect = 2.8
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 188 TASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPA---SKPLAKTTTTK 244
T+++ +A + A +A+A A A + P PA P ++P+A
Sbjct: 103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQT 162
Query: 245 TTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTA 289
A I P A + PA + P T+A+P +
Sbjct: 163 LVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPT 207
Score = 29.4 bits (65), Expect = 5.6
Identities = 26/114 (22%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 256 VKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
++ +AT A P + A A P + + A P
Sbjct: 101 IRTSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPV------IAQAQP 154
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS 369
AP P P P A AP V+ PV A T+AS T S
Sbjct: 155 IAPAPHQTLVPAPHDTIVPAPHAAHLPSAPAT---PVSVAPVDAGTSASPTPSE 205
Score = 29.4 bits (65), Expect = 7.2
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPV 357
PVA+ + + A + +SA+ + A A P A P P PA +P+ + V
Sbjct: 107 PVATPL-ELAHADLSASAQVDAAAGAEPGAG-QAHTPVPAPAPVIAQAQPIAPAPHQTLV 164
Query: 358 SATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPST 406
A + + SA P+ TSA+ ++P +
Sbjct: 165 PAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQ 213
>gnl|CDD|235752 PRK06251, PRK06251, V-type ATP synthase subunit K; Validated.
Length = 102
Score = 31.6 bits (72), Expect = 0.32
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 188 TASSDLAAKVAG-----ALVVGAAAAGAAVAVKKATAA 220
A SD A AG L VG AA GA +AV A AA
Sbjct: 24 QAPSDTAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAA 61
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 34.3 bits (78), Expect = 0.32
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 347 PLTNGV-TKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPS 405
P G+ P S +T + +++SS T+ S+ P+ T A + PA S
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPS---------TVVAPSTSPPAGHLGS 606
Query: 406 TTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIK 455
+ P+ P+T+ PA+ P+TT S+ E++IK
Sbjct: 607 PPATPSKIVSPSTSP-PASHLGSPSTTPSSPESSIKVASTETASPESSIK 655
Score = 33.5 bits (76), Expect = 0.51
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPA-----APRVPLSQRTSA 392
P A P + T S+ TT S S S+V + S + PA P P + +
Sbjct: 559 PGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPS 618
Query: 393 AKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDI 437
P + +T S P ++ K A+ + +S +T + +
Sbjct: 619 TSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESSV 663
Score = 30.4 bits (68), Expect = 4.4
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 280 TAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP--VAAPAPKPR 337
P ST + P + + +T + P+ + P P + +P+ P
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPP 622
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAA 377
+ ++ + V++T TAS SS V S ++
Sbjct: 623 ASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESS 662
>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional.
Length = 290
Score = 33.8 bits (77), Expect = 0.33
Identities = 29/165 (17%), Positives = 43/165 (26%), Gaps = 24/165 (14%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVR-KPVASTITKTATSTVSAAPKPSAPKPAA 324
+P + P A R T S++ P
Sbjct: 30 ASPARVSFEEPADRARRGAGQARGRSQAERRFHHYDEARADYPYYTGSSSEDERPADPRP 89
Query: 325 PKKPVAAP-APKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
++P A P A P PA A P S A+ +PR
Sbjct: 90 SRRPHAQPEASGPGPARGARGPAG----------------------SRGRGRRAESPSPR 127
Query: 384 VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSK 428
P + + ++A K A A + + P PA K
Sbjct: 128 DPPNPKGASAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARK 172
Score = 32.3 bits (73), Expect = 0.87
Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 26/166 (15%)
Query: 290 PKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV-----AAPAPKPRPATAAPA 344
P P R+P A A P + A A +P PR P
Sbjct: 85 ADPRPSRRPHA----------QPEASGPGPARGARGPAGSRGRGRRAESPSPR---DPPN 131
Query: 345 PKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKP 404
PK + ++ A + A + + PA L T+ P T P T +
Sbjct: 132 PKGASAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSP-TAPWTPRV 190
Query: 405 STTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEEL 450
+ +K T A R A T ++ A D ++ P EEL
Sbjct: 191 AGFNKRTFC---AAVGRVAATHARMAAAQLWD----LSHPRNDEEL 229
Score = 32.3 bits (73), Expect = 1.1
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 233 ASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKP 292
A P ++++ A P P ++ P PA + +P P
Sbjct: 69 ADYPYYTGSSSEDERPADPR--PSRRPHAQPEASGPGPARGARGPAGSRGRGRRAESPSP 126
Query: 293 APVRKPVASTITKTATST-VSAAPKPSAPKPAAPK--KPVAAPAPKPRPATAAPAP 345
P ++ + S +A AP PAAPK K A A K +TA +P
Sbjct: 127 RDPPNPKGASAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSP 182
Score = 29.2 bits (65), Expect = 9.4
Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKP--VASTITKTATSTVSAAPKPSAPKPA 323
P+P+ +P +P + P A PA R A + + A P K A
Sbjct: 85 ADPRPSRRPHAQPEASGPGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGRKSA 144
Query: 324 APKKPVA--APAPKPRPATAAPAPKPLTNGVTKRPVSAT 360
APAP PA + P S T
Sbjct: 145 CADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPT 183
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 33.9 bits (77), Expect = 0.33
Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 1/159 (0%)
Query: 189 ASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTA 248
S L GA+ V + A T K A A + TT+
Sbjct: 9 TSLALGLLTTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANT 68
Query: 249 AKPAISPVKKTA-TTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
+ ++K T K + K + +A + +T + T
Sbjct: 69 RQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTP 128
Query: 308 TSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK 346
+ V+ P + P+P K +P + A PK
Sbjct: 129 KTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPK 167
Score = 33.2 bits (75), Expect = 0.55
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 16/143 (11%)
Query: 186 ESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKT 245
+ST + A L + AGA A +A ++ P P + KT+ +K
Sbjct: 34 QSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNE-EKTSASKI 92
Query: 246 TTAAKPAISPVKKTATTTAKPAPK---PATKP---APKPTTAAPKSTTTAPKPAPVRKPV 299
++P K + +A PAPK T PK P ST T +P+
Sbjct: 93 EKISQPKQEEQK-SLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTP-------QPM 144
Query: 300 ASTITKTATS-TVSAAPKPSAPK 321
ST + T S T+ A PK
Sbjct: 145 QSTKSDTPQSPTIKQAQTDMTPK 167
Score = 32.0 bits (72), Expect = 1.1
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 340 TAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQ-RTSAAKPATK 398
T P TN K S S+ S + + AP+ SQ T + P TK
Sbjct: 73 TPKLEKAPNTN-EEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTK 131
Query: 399 PATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGL 458
T + T +P ++K T P T K A T T +++ +T E + G
Sbjct: 132 VTTPPSTNTPQPMQSTKSDTPQSP---TIKQAQTDMTPKYEDLRAYYTKPSFEFEKQFGF 188
Query: 459 ITTP 462
+ P
Sbjct: 189 LLKP 192
Score = 30.5 bits (68), Expect = 3.9
Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 21/175 (12%)
Query: 206 AAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAK 265
A A+ + A T + A K S + K T K A I+ +ATT A
Sbjct: 7 AKTSLALGLLTTGAITVTTQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAA 66
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
+ T PK A + K AS I K + + AP
Sbjct: 67 NTRQERT---PKLEKAPNTNE---------EKTSASKIEKISQPKQEEQKSLNISATPAP 114
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPA 380
K+ + + P K VT P + T +++ S + K A
Sbjct: 115 KQEQ----SQTTTESTTPKTK-----VTTPPSTNTPQPMQSTKSDTPQSPTIKQA 160
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 34.1 bits (79), Expect = 0.34
Identities = 17/96 (17%), Positives = 26/96 (27%)
Query: 191 SDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAK 250
+L A + A GAAAA A A A A + A + A
Sbjct: 49 GELIAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAA 108
Query: 251 PAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
A + A + + A + +
Sbjct: 109 RAAAAAAAEAASAPEAAQARERRERGEAARRGAARK 144
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 34.1 bits (79), Expect = 0.34
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+ A A A AA A AP
Sbjct: 90 APAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAA 125
Score = 33.7 bits (78), Expect = 0.42
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
A + +AA + +A PAA A A A AAPA +
Sbjct: 87 AGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEV 127
Score = 33.4 bits (77), Expect = 0.54
Identities = 9/38 (23%), Positives = 10/38 (26%)
Query: 310 TVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+ S A A A AA A A P
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAP 120
Score = 33.0 bits (76), Expect = 0.72
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+A+ +A + AAP AA A K PA AAPA
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA 124
Score = 32.2 bits (74), Expect = 1.1
Identities = 9/49 (18%), Positives = 13/49 (26%)
Query: 280 TAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP 328
+A+ A A+ A A P+AP P
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 31.8 bits (73), Expect = 1.7
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 248 AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA 307
+A A + A A A A K A + AP P T+
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKA--APAPAAPAAPAAEVAADPDIPAGTEMV 140
Query: 308 TSTVSAA 314
T TV A
Sbjct: 141 TMTVREA 147
Score = 31.4 bits (72), Expect = 2.0
Identities = 12/56 (21%), Positives = 16/56 (28%)
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVT 353
+ A + +A +A AAPA A P T VT
Sbjct: 86 DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVT 141
Score = 31.0 bits (71), Expect = 2.5
Identities = 18/63 (28%), Positives = 23/63 (36%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
+ A A A +A AA AAK A+ A AA P I + T T
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMTV 144
Query: 265 KPA 267
+ A
Sbjct: 145 REA 147
Score = 30.7 bits (70), Expect = 3.8
Identities = 13/55 (23%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAP 332
AAP + A AP A+ AAP A P P
Sbjct: 86 DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEV--AADPDIPAGTE 138
Score = 30.3 bits (69), Expect = 4.8
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
+ A + +AA P+A AA KK APA PA A
Sbjct: 84 ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAA 129
Score = 29.9 bits (68), Expect = 7.0
Identities = 13/60 (21%), Positives = 16/60 (26%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTT 288
A+ + P A AA A + K A AP P T T
Sbjct: 84 ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMT 143
>gnl|CDD|234068 TIGR02946, acyl_WS_DGAT, acyltransferase, WS/DGAT/MGAT. This
bacteria-specific protein family includes a
characterized, homodimeric, broad specificity
acyltransferase from Acinetobacter sp. strain ADP1,
active as wax ester synthase, as acyl coenzyme
A:diacylglycerol acyltransferase, and as
acyl-CoA:monoacylglycerol acyltransferase [Unknown
function, Enzymes of unknown specificity].
Length = 446
Score = 33.8 bits (78), Expect = 0.34
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 322 PAAPKKPVAAPAPKPRPAT-------AAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSA 374
P P P+ AP P P+P+T + P L V A R SA
Sbjct: 151 PDPP--PLPAPPPPPQPSTRGLLSGALSGLPSALLRRVASTAPGVVRAAGRAVEGVARSA 208
Query: 375 SAAKP-AAPRVPLSQRTSAA 393
A P AP PL+ S
Sbjct: 209 RPALPFTAPPTPLNGPISRK 228
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 34.0 bits (78), Expect = 0.37
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 298 PVASTITKT--ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKR 355
P T + ATST+ P+P KP + PA + P P P G +
Sbjct: 56 PPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSP 115
Query: 356 PVSATTTASRTSSS-----SVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKP 410
+ A +T+ R + + ++ + + S P+ K P
Sbjct: 116 RLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSE-SLKVKNGGKVYP 174
Query: 411 TTASKPATATR 421
SK T R
Sbjct: 175 KGFSKHKTHKR 185
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 34.0 bits (78), Expect = 0.39
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 1/135 (0%)
Query: 336 PRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP 395
P +P ++ ++ S + ++ S SA P AP P S+R S A+
Sbjct: 221 SLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAE-PLAPASPSSRRPSTAQE 279
Query: 396 ATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIK 455
++ + + + P ++ + P+TT T + N+ + +
Sbjct: 280 EQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRRPQMVT 339
Query: 456 SGLITTPGRDNIHYP 470
H
Sbjct: 340 PKQEGGAAVSQNHDG 354
Score = 31.7 bits (72), Expect = 1.6
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 2/162 (1%)
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVA 330
P P + P + S + +T + PA+P
Sbjct: 215 GFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSRRP 274
Query: 331 APAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRT 390
+ A + + A ++P +P + P S+ + S + S T + P + R
Sbjct: 275 STAQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRR 334
Query: 391 SAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATT 432
+ A S T P RP+ + P +
Sbjct: 335 PQMVTPKQEGGAAVSQNHDGGTVRAP--RGRPSGSGQSPPSN 374
>gnl|CDD|236692 PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II;
Provisional.
Length = 445
Score = 33.7 bits (77), Expect = 0.41
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 306 TATSTVSA-APKPSAPKPAAPKKPVAAPAPKPRPATAAPAP-KPLTNGVTKRPVSATTTA 363
T T++A P P P P K+ PR + A P K +N T S T T
Sbjct: 120 TVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTR 179
Query: 364 SRTSSSSVTS 373
+++ T
Sbjct: 180 PAARATANTG 189
>gnl|CDD|205996 pfam13825, Paramyxo_PNT, Paramyxovirus structural protein V/P
N-terminus. This family consists of several
Paramyxoviridae structural protein P and V sequences.
From a structural point of view, P is the
best-characterized protein of the replicative complex. P
is organised into two moieties that are functionally and
structurally distinct: a C-terminal moiety (PCT) and an
N-terminal moiety (PNT). PCT is the most conserved in
sequence and contains all regions required for virus
transcription, whereas PNT, which is poorly conserved,
provides several additional functions required for
replication. P protein plays a crucial role in the
enzyme by positioning L onto the N/RNA template through
an interaction with the C-terminal domain of N. Without
P, L is not functional. The N, P, and L proteins of SeV
and measles and mumps viruses are functionally
equivalent. However, sequence identity between proteins
from these viruses is limited, and the viruses have been
placed in different genera (Respirovirus, Morbilivirus,
and Rubulavirus, respectively). SeV P protein (568 aa)
is a modular protein with distinct functional domains.
The N-terminal part of P (PNT) is a chaperone for N and
prevents it from binding to non-viral RNA in the
infected cell.
Length = 309
Score = 33.3 bits (76), Expect = 0.43
Identities = 17/81 (20%), Positives = 29/81 (35%)
Query: 334 PKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAA 393
P P P+ KP+ G +R S+ T S+ T ++ P + +
Sbjct: 211 PIPDVKRGDPSCKPIKKGTEERSASSGTETESLSTGGATQSALKSTWGSSEPNASAGNVR 270
Query: 394 KPATKPATAKPSTTSKPTTAS 414
+ A+ + TTAS
Sbjct: 271 QSASNAKMIQKCKQESGTTAS 291
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles
are composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 32.6 bits (74), Expect = 0.44
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Query: 259 TATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS 318
T ++ + + + A +P A AP PV + A + AA
Sbjct: 31 TPYSSVRKSDTRISNNAYQPAYAKTAYAYAAPAVYAAAAPVYAAHAYAAPAVHYAA-AAH 89
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAA 377
PA K AAPA + A AAPAP T P A ++++V + AA
Sbjct: 90 YAAPAYAKYAYAAPAVTAKAAYAAPAPVYKTAYAAAAPAVYAHAAPVVATATVAYSPAA 148
Score = 29.6 bits (66), Expect = 4.6
Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 11/116 (9%)
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK 378
A +PA K A AP AA AP P A+ ++ + + A
Sbjct: 47 AYQPAYAKTAYAYAAP---AVYAAAAPV-YAAHAYAAPAVHYAAAAHYAAPAYAKYAYAA 102
Query: 379 PAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTS 434
PA + + + A PA P + P + A AT PA S
Sbjct: 103 PAV-----TAKAAYAAPA--PVYKTAYAAAAPAVYAHAAPVVATATVAYSPAAAVS 151
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 33.7 bits (76), Expect = 0.48
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Query: 204 GAAAAGA--AVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTAT 261
GAA G ++ +++++ + ++ P+S+P T + + + + P +PV ++ +
Sbjct: 1801 GAANCGGRWMISAGRSSSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRS 1860
Query: 262 TTAKPAPKPATKP---APKPTTAAPKSTT-TAPKPAPVRKPVASTITKT--ATSTVSAAP 315
+ +P+ P AP+ + A S TAP AP+ + S+ + P
Sbjct: 1861 GRRRERDRPSANPFRWAPRQRSRADHSPDGTAPGDAPLNLEDGPGRGRPIWTPSSATTLP 1920
Query: 316 KPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
S P+ + + AP PA AP+P
Sbjct: 1921 SRSGPEDSVDETETEDSAP---PARLAPSP 1947
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 33.3 bits (76), Expect = 0.50
Identities = 40/149 (26%), Positives = 52/149 (34%), Gaps = 16/149 (10%)
Query: 146 EKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGA 205
E A ET + AE ++ EA+T +A A+ L A + A
Sbjct: 183 EALAAAPARAETLAREAEDAARAAD------EAKTAAAAAAREAAP-LKASLRKLERAKA 235
Query: 206 AAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKK-TATTTA 264
A KA AA KTD+ +K A+ K A A + + A A
Sbjct: 236 RADAELKRADKALAAAKTDE--------AKARAEERQQKAAQQAAEAATQLDTAKADAEA 287
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
K A ATK A K A T A A
Sbjct: 288 KRAAAAATKEAAKAAAAKKAETAKAATDA 316
Score = 30.6 bits (69), Expect = 4.2
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 11/161 (6%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P AAP + P + +A+ + T A A + A K AA A +
Sbjct: 164 PNDAAPVDISHPALFVPKAEALAAAPARAETLAREAE---DAARAADEAKTAAAAAAR-- 218
Query: 338 PATAAPAPKPL--TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKP 395
AAP L R + A + +++ T + A+ + +Q+ + A
Sbjct: 219 --EAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEA-- 274
Query: 396 ATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
AT+ TAK +K A+ A + A +TD
Sbjct: 275 ATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATD 315
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 33.4 bits (76), Expect = 0.50
Identities = 21/124 (16%), Positives = 31/124 (25%), Gaps = 4/124 (3%)
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPAPVRKP-VASTITKTATSTVSAAPKPSAPKPAAP 325
A P + S KP P S I S + P P P
Sbjct: 1 MSSVGLPTAGSPLRSHIGSP---SKPVVGSTPFSRSRIPAAVDSADETSMAPPPPPSPLP 57
Query: 326 KKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVP 385
V+ + + P+ A + S+ V + P
Sbjct: 58 LLKVSPNSLQYPAGYLGAVPERTNEAENGSIPEAMEYLTNILSAKVYDVAIESPLQLAKK 117
Query: 386 LSQR 389
LS+R
Sbjct: 118 LSER 121
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has
been accumulated to support the idea that neural
proteoglycans are involved in various cellular events
including mitogenesis, differentiation, axonal outgrowth
and synaptogenesis. This domain contains several
potential sites of chondroitin sulphate attachment, as
well as potential sites of N-linked glycosylation.
Length = 253
Score = 33.0 bits (75), Expect = 0.55
Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 7/176 (3%)
Query: 163 EKETPLSEVPVIPQEAQ-TVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAK 221
E E +S VP A T E A A D + A G V ++ A
Sbjct: 11 EAEGAVSSVPAWEDRANDTREGAGGPAAGDDETSPEEVG--SEEAPVGPGVGPEEGLEAS 68
Query: 222 KTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTA 281
P + +S L T + ++ + + P A P+ T A
Sbjct: 69 AAVTPTAWLEASSPGLGGVTAEAGSGDSQGLPATLPTPDEALGNSNPSLAL---PEATEA 125
Query: 282 A-PKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
+ P S KP+ + + + + + + P P+AP+P +P + P P
Sbjct: 126 SNPPSPGPGDKPSLLPELPKESPVEVWLNLGGSTPDPAAPEPTSPAQGTLEPQPAS 181
>gnl|CDD|237533 PRK13863, PRK13863, type IV secretion system T-DNA border
endonuclease VirD2; Provisional.
Length = 446
Score = 33.0 bits (75), Expect = 0.61
Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 23/177 (12%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
P P +P +A +++P S+I A VS + A +P+A K
Sbjct: 234 TSPGEAPQGEPESAERPEKLQNESEVRLQEPAGSSIKADARIRVSLESERRA-QPSASKI 292
Query: 328 PVA--------------APAPKPRPATAAPAPKPLTNGVT------KRPVSATTTASRTS 367
PVA + T A + T+ + KRP S
Sbjct: 293 PVADDFGIETSYVAEGDVRKLEGNSGTPRLATEVATHTTSERQQRRKRPRDDEGEPSGAK 352
Query: 368 SSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTA--SKPATATRP 422
+ + + A + PA P + + + + A S PATA R
Sbjct: 353 RTRLNGIAVGPEANAGEQDGRDDPITSPAQPPRSNPLADPVRASIATDSLPATADRQ 409
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 33.0 bits (75), Expect = 0.63
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 358 SATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP- 416
A+T++S +S + T+ + PA P S TS T +T + T T AS+P
Sbjct: 27 GASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNST-NANGTESTTQASQPH 85
Query: 417 ---ATATRPATTTSKP 429
T T + S P
Sbjct: 86 SHETTITCTKSLISVP 101
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 33.1 bits (76), Expect = 0.71
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
A PA PA + A P AA K+ AP AP K + + V A P
Sbjct: 283 AAPAAAPAKQEAAAPAPAAAKA--EAPAAAPAAKAEGKSEFAENDAYVHATP 332
Score = 32.7 bits (75), Expect = 0.95
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 313 AAPKP-SAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
AAP A + AA P AA A P A AA A
Sbjct: 283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318
Score = 31.9 bits (73), Expect = 1.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
A + A + +AP PAA K A AP + +
Sbjct: 283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSE 320
Score = 30.4 bits (69), Expect = 4.8
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 203 VGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPV 256
V AA AA A ++A A A A A+ + A +P+
Sbjct: 280 VEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPL 333
Score = 30.0 bits (68), Expect = 6.8
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+A K A PA APA P +
Sbjct: 286 AAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFA 322
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 32.9 bits (75), Expect = 0.77
Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKK 327
A A A + PV A T K + A KP
Sbjct: 437 RDEAIMAPLPEAPAKSAIEEPADELEPVA-EAAETEGKGTDRSARAV------KPIPVIA 489
Query: 328 PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASR 365
P A PA A +P + +R +A A+R
Sbjct: 490 PAAYPASAKTAEPAGFFGRPPDDPGVRRDGAAEKRATR 527
Score = 31.7 bits (72), Expect = 1.6
Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK 235
Q A +E +E+ + L A + + A VA T K TD+ A KP
Sbjct: 429 QLAHPIEDRDEAIMA-PLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVKPI-- 485
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT 287
PA P A +P P + AA K T
Sbjct: 486 -----------PVIAPAAYPASAKTAEPAGFFGRPPDDPGVRRDGAAEKRAT 526
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 32.9 bits (75), Expect = 0.78
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
+T K + A P A AP AP PA A P P
Sbjct: 2 PFATDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRP 48
Score = 31.8 bits (72), Expect = 1.7
Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 262 TTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS--A 319
T AK P P P +AP AP P P A A P+P
Sbjct: 5 TDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAA------------AGPRPDDEP 52
Query: 320 PKPAAPKKPVAAPAPKPRP--ATAAPAPKPLTNGVTKR 355
K + + A K R A + + L G + R
Sbjct: 53 FKASDALHALVALKLKKRIDQIEALDSIEDLVGGKSSR 90
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed.
Length = 306
Score = 32.5 bits (74), Expect = 0.80
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 258 KTATTTAKPAPKPA---TKPAPKPTTAAPKSTTTAPKPAPVRKPVASTIT 304
K+A T A+ A + P A PK K AP+RK +A +T
Sbjct: 44 KSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKVAPIRKAIARAMT 93
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 32.8 bits (74), Expect = 0.80
Identities = 34/140 (24%), Positives = 44/140 (31%), Gaps = 6/140 (4%)
Query: 202 VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTAT 261
V A ++ T A KPG + A + +A+ T K T S V +
Sbjct: 91 TVEAVVPHMGESITDGTLATFLKKPGERVQ-ADEAIAQIETDKVTIDIASPASGVIQEFL 149
Query: 262 TTAKPAPKPATKPAPKPTTAAPKSTTT----AP-KPAPVRKPVASTITKTATSTVSAAPK 316
+P TK A + S T P P P A K + A K
Sbjct: 150 VKEGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEK 209
Query: 317 PSAPKPAAPKKPVAAPAPKP 336
P AP P K A P
Sbjct: 210 PKAPSSPPPPKQSAKEPQLP 229
Score = 30.5 bits (68), Expect = 4.6
Identities = 39/143 (27%), Positives = 50/143 (34%), Gaps = 11/143 (7%)
Query: 199 GALVVGAAAAGAAVAVKKATAAKKTDKPG-PAAKPASKPLAKTTTTKTTT---AAKPAIS 254
G L G V +A A +TDK A PAS + + + T K AI
Sbjct: 106 GTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAII 165
Query: 255 PVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAA 314
+ A + P+ K PKP+ A KP PVA K +
Sbjct: 166 SKSEDAASQVTPSQKIPETTDPKPSPPAEDKQ----KPKVESAPVAE---KPKAPSSPPP 218
Query: 315 PKPSAPKPAAPKKPVAAPAPKPR 337
PK SA +P P K P R
Sbjct: 219 PKQSAKEPQLPPKERERRVPMTR 241
>gnl|CDD|221825 pfam12877, DUF3827, Domain of unknown function (DUF3827). This
family contains the human KIAA1549 protein which has
been found to be fused fused to BRAF gene in many cases
of pilocytic astrocytomas. The fusion is due mainly to a
tandem duplication of 2 Mb at 7q34. Although nothing is
known about the function of KIAA1549 protein, the BRAF
protein is a well characterized oncoprotein. It is a
serine/threonine protein kinase which is implicated in
MAP/ERK signalling, a critical pathway for the
regulation of cell division, differentiation and
secretion.
Length = 684
Score = 33.0 bits (75), Expect = 0.83
Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 9/135 (6%)
Query: 271 ATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP----SAPKPAAPK 326
A P PK ++ S+ + + + S S+ K + P A +
Sbjct: 360 AEVPTPKSKSSQDGSSNKKRRRGRKSPSDGDSEGSSVISNRSSREKSGRPSTTPSVTAQQ 419
Query: 327 KPVAAPAPKPRPATAAPAPKPLTNGVTKRPVS----ATTTASRTSSSSVTSASAAKPAAP 382
KP K PA + + L++ V ++ SS + + AP
Sbjct: 420 KPTKEEGRKK-PAPPSGTDEQLSSASIFEHVDRLSRPSSDPYDRSSGKIQLIAMQPMPAP 478
Query: 383 RVPLSQRTSAAKPAT 397
VP S A
Sbjct: 479 PVPPRFEPSRDDRAA 493
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 32.7 bits (75), Expect = 0.83
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 66 FQETHVALETNLDDFTSQETKLDDFISAHTEKTPE-VSEPKEEVLDDLV--SVPTSVP 120
QE VA+E L + DF SA + P VSE + +LD LV SV T+ P
Sbjct: 39 LQEHIVAIEKPLSEIEK------DFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASP 90
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 32.5 bits (75), Expect = 0.86
Identities = 10/61 (16%), Positives = 18/61 (29%)
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP 356
K + + + + A A + A AP P+ P+ +P
Sbjct: 217 KELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Query: 357 V 357
V
Sbjct: 277 V 277
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 33.0 bits (76), Expect = 0.88
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
AA K APKP K A A R A AA A K
Sbjct: 191 AAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKKA 225
Score = 31.0 bits (71), Expect = 3.4
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP 356
S A + AA K P P+ A +
Sbjct: 180 SVASGRTMAAIAAGKGRAPKPFMTPKGNAGLAAAARAAAAAAAKK 224
Score = 29.5 bits (67), Expect = 8.9
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 370 SVTSASAAKPAAPRVPLSQRTSAAKP-ATKPATAKPSTTSKPTTASKPATATRPA 423
SV S A + A KP T A + ++ A+ A + A
Sbjct: 180 SVASGRTMAAIAAG-----KGRAPKPFMTPKGNAGLAAAARAAAAAAAKKAKKKA 229
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 32.4 bits (74), Expect = 0.90
Identities = 38/181 (20%), Positives = 58/181 (32%), Gaps = 27/181 (14%)
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
P + T +P R S + + T + +PS+ +
Sbjct: 149 GPPLQHRKRD-AVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESP 207
Query: 334 PKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAA 393
+ T P P +NG T+ S T SSS + + A PR S R++
Sbjct: 208 SNLQVTT--DVPPPYSNG---------TSRSSTMSSSANLSIISSLATPRSGESFRSTPT 256
Query: 394 ------KPATKPATAKPSTT-----SKPTTASKPATATRPATTT----SKPATTTSTDIE 438
P + A+ K TA+ A P T S A+TTS +I
Sbjct: 257 SGSSSINPVSGLDEAEEDRIDEQLFLKLRTATDMALRVLPQLTEQFSKSLIASTTSRNIT 316
Query: 439 D 439
Sbjct: 317 P 317
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 32.5 bits (74), Expect = 0.91
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 312 SAAPKPSAPKPAAPKKP-----VAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRT 366
P PS + +P + P P+ P+ A P P P P S+++++S +
Sbjct: 8 PGVPLPSTARHTTKSRPRRRPDLTLPLPQRDPSLAVPLPLP--------PPSSSSSSSSS 59
Query: 367 SSSSVTSASAAKP 379
SS+S ++ SAAK
Sbjct: 60 SSASGSAPSAAKS 72
>gnl|CDD|235895 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 651
Score = 32.7 bits (75), Expect = 0.93
Identities = 28/116 (24%), Positives = 37/116 (31%), Gaps = 17/116 (14%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
A AA + V + T + + PL TTT T AA T T +
Sbjct: 433 AIAAASPVRASAGSTNTGTGAISQGSVSSGYPLPSGTTTLTYDAA---------TGTLSG 483
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT---ATSTVSAAPKP 317
PA T P S T P PV + I+ + T+S P
Sbjct: 484 FPAGTTVTV-----AGTPPTSVTITPATTPVPYTSGAGISLVFNGVSVTLSGTPAD 534
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 31.7 bits (72), Expect = 0.95
Identities = 16/79 (20%), Positives = 20/79 (25%), Gaps = 6/79 (7%)
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
K P T A + T P P P + P P+P P
Sbjct: 103 LEKACRPQRPVMTRATSTTVQTTPLPQPPSTA------PSYPGPQYQGYHPMPPQPGMPA 156
Query: 327 KPVAAPAPKPRPATAAPAP 345
P + P P P
Sbjct: 157 PPYSLQYPPPGLLQPQGPP 175
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 32.4 bits (74), Expect = 0.97
Identities = 25/136 (18%), Positives = 34/136 (25%), Gaps = 41/136 (30%)
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKPA-PVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
A PA AP AA ++ A + + +AS P+ + A
Sbjct: 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLAS---------------PAVRRLARE 125
Query: 326 KK-----------------------PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT-- 360
A PA AA AP + P+S
Sbjct: 126 AGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRK 185
Query: 361 TTASRTSSSSVTSASA 376
A R S T
Sbjct: 186 AIAERMVESKQTIPHL 201
Score = 32.0 bits (73), Expect = 1.4
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 7/136 (5%)
Query: 189 ASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTA 248
A+ ++ A AG L G V V A + ++ G A A++ + +A
Sbjct: 44 ATMEVPAPDAGVLAKILVEEGDTVPVGAVIA--RIEEEGADAPAAAEAPPEPAAAAPASA 101
Query: 249 AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
A S A A + A + K T P +K V + + + A
Sbjct: 102 PATAAS-----AAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAA 156
Query: 309 STVSAAPKPSAPKPAA 324
+ + AP +AP AA
Sbjct: 157 AAAAPAPAAAAPASAA 172
Score = 32.0 bits (73), Expect = 1.4
Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 11/138 (7%)
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAP--KPRPATAAPAPKPL--TNGVTKRPVSATT 361
+ AA + AA A A A+PA + L G+ V T
Sbjct: 78 EEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTG 137
Query: 362 TASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATR 421
R + V +A A K AA + A A PA+A P + + A A R
Sbjct: 138 PGGRITKKDVEAAVAEKAAAA-------AAPAPAAAAPASAAGEEERVPMSRIRKAIAER 190
Query: 422 PATTTSKPATTTSTDIED 439
+ T + D
Sbjct: 191 MVESKQTIPHLTLFNEVD 208
>gnl|CDD|237212 PRK12808, PRK12808, flagellin; Provisional.
Length = 476
Score = 32.6 bits (74), Expect = 0.97
Identities = 37/197 (18%), Positives = 57/197 (28%), Gaps = 4/197 (2%)
Query: 139 LTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVA 198
+ + VE K A D+T +E + ++ + + E + A
Sbjct: 196 IAKATVEAKAAFDKAKDDTKAEDSNILDAAADGFKDGKADDAAKDVEAIKTALSAFTGAA 255
Query: 199 GALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAA--KPAISPV 256
AA VA K A AKTT+T++ A A
Sbjct: 256 TLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVADLDTAKTTSTRSKAAKDLVAAYDKA 315
Query: 257 KKTATT--TAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAA 314
K A AK + KS A A + + + +K + AA
Sbjct: 316 KSGAKPNDVAKAYLEAKMAYEKDNNAIDGKSKLEAADDALEKDAIKTDASKVLVPKLEAA 375
Query: 315 PKPSAPKPAAPKKPVAA 331
K + A V A
Sbjct: 376 KKATTNSKADSLDAVKA 392
>gnl|CDD|234336 TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
It is often found on plasmids. This protein family the
member related to ParB, and is designated PRTRC system
ParB family protein.
Length = 554
Score = 32.4 bits (74), Expect = 0.98
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 258 KTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK 316
K A A A + PA P T A + + + KP + +S S K
Sbjct: 322 KKAERAAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAAKP--AAKKAVPSSQPSNRVK 378
Score = 32.0 bits (73), Expect = 1.6
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 391 SAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTDIED 439
+A KPA A K + + A +PA + P++ S ++D
Sbjct: 331 AAQKPAAPAAGPGTPAKEKSPAETATSGAAKPAAKKAVPSSQPSNRVKD 379
Score = 29.7 bits (67), Expect = 6.8
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 313 AAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
A +A KPAAP PA + PA A + P S + + V
Sbjct: 326 RAAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAAKPAAKKAVPSSQPSNRVKDYREKVW 385
Query: 373 SASAAKPAAPRVPLSQR 389
+ A+ A ++R
Sbjct: 386 RKALARELALNPEQNRR 402
Score = 29.3 bits (66), Expect = 9.6
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAA-PAPKPRPATAAPAPK 346
A + AAP PA K P + +PA P
Sbjct: 330 AAAQKPAAPAAGPGTPAKEKSPAETATSGAAKPAAKKAVPS 370
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 32.4 bits (73), Expect = 1.0
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 357 VSATTTASRTSSSSVTSASAA----KPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTT 412
++AT A+ ++S V S+ AA A L+ +A + T P + + TT
Sbjct: 624 INATIAAASANNSEVQSSEAACIESSLADAAAILAMFEAAYQNCTAPGSVTVPAAANTTT 683
Query: 413 ASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLIT 460
+S T T TTT+ P TTT+ P + AA +G
Sbjct: 684 SSTTTTTT--TTTTAAPTTTTTKAANAPFTYPLCNLIMSAACSAGGAG 729
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 32.5 bits (74), Expect = 1.0
Identities = 27/143 (18%), Positives = 36/143 (25%), Gaps = 11/143 (7%)
Query: 194 AAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA- 252
A+ G VG V K + G A P TA
Sbjct: 618 QARTFGRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRV 677
Query: 253 --ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATST 310
PV+ TA A AP+ P P P P + A
Sbjct: 678 ARGDPVRPTAHHAALRAPQA---PRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIA--- 731
Query: 311 VSAAPKPSAPKPAAPKKPVAAPA 333
+ P P+P ++ A
Sbjct: 732 --SPTAPPEPEPPGAEQADGAEN 752
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 32.2 bits (73), Expect = 1.1
Identities = 30/155 (19%), Positives = 46/155 (29%), Gaps = 12/155 (7%)
Query: 270 PATKPAPKPTTAAPKSTTTAPKP-APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP 328
A T+APK + A + P P++ P ++P
Sbjct: 260 SAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRP 319
Query: 329 VAAPAPKP-------RPATAAPAPKPLTNGVTKRPVSA----TTTASRTSSSSVTSASAA 377
R A A +P T+ +K SA + + SS + S+
Sbjct: 320 RVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLE 379
Query: 378 KPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTT 412
PL TS + T+ P S P T
Sbjct: 380 DDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLT 414
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 32.6 bits (74), Expect = 1.1
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 19/135 (14%)
Query: 268 PKPATK---PAPKPTTAAPKSTTTAPKPAPVRKP--VASTIT------KTATSTVSAAPK 316
PKPA K APK T+ S ++ K K A I + +S+ S +
Sbjct: 721 PKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSS 780
Query: 317 PSAPKPAAPKKPVAAPAPK-----PRPATAAPAPKPLT-NGVTKRPV--SATTTASRTSS 368
S ++ K+ + K P P++ + P + KRP T+++S S
Sbjct: 781 SSHHHSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQEDTSSSSGPFS 840
Query: 369 SSVTSASAAKPAAPR 383
+S T +S+ + +
Sbjct: 841 ASSTKSSSKSSSTSK 855
Score = 29.9 bits (67), Expect = 6.9
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 6/136 (4%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTI-TKTATSTVSAAPKPSAPKPAAPK 326
++ P+ T K K + + ++ T ++ + +P A
Sbjct: 523 SPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAAT 582
Query: 327 K--PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAA--- 381
K +P +P+ + A K +K + SSSS + + P +
Sbjct: 583 KGSRKPSPRKEPKSSVPPAAEKRKYKSPSKIVPKSREFIETDSSSSDSPEDESLPPSSQS 642
Query: 382 PRVPLSQRTSAAKPAT 397
P S + S A T
Sbjct: 643 PGNTESSKESCASLRT 658
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 32.6 bits (74), Expect = 1.1
Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 8/146 (5%)
Query: 132 SPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASS 191
+ +PA + + E A V + A+ E P+ +A AE +TA S
Sbjct: 285 AKAPAKVAKERALAELPARVAEL-QAQLNKAQHELAQKAAPLAAAQAALDAPAETATAPS 343
Query: 192 DLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKP 251
A +V+ + A A G A+ S + +
Sbjct: 344 APAPQVSAESSPAQPGSYLLAAPGDAPL-------GELAQAQSARERLAEESVPAAEPRS 396
Query: 252 AISPVKKTATTTAKPAPKPATKPAPK 277
++PV A+ ++ PAP
Sbjct: 397 RLAPVAAVEQPFAEVESPLSSLPAPL 422
Score = 31.0 bits (70), Expect = 3.1
Identities = 31/155 (20%), Positives = 39/155 (25%), Gaps = 26/155 (16%)
Query: 302 TITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATT 361
+ S +SA P P PAA P P RP PAP P G T S T
Sbjct: 141 PPGYSPKSALSAEPSHPVPAPAAASAPPPPPRA-ARPVR-QPAPAPAAPGDTYTVRSGDT 198
Query: 362 ------TASRTSSSSVTSASAAKPAAP------------------RVPLSQRTSAAKPAT 397
+V A R+P + + P
Sbjct: 199 LWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRIPSAAQILRESPQE 258
Query: 398 KPATAKPSTTSKPTTASKPATATRPATTTSKPATT 432
A K T + SK +P
Sbjct: 259 ALAEVKAQTAAFAGEPSKADRVGKPVAKAPAKVAK 293
Score = 30.3 bits (68), Expect = 6.0
Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 11/160 (6%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTK--RPVSATT 361
+ A + V A A +P+ + A P A L V + ++
Sbjct: 256 PQEALAEVKAQTAAFAGEPSKADRVGKPVAKAPAKVAKERALAELPARVAELQAQLNKAQ 315
Query: 362 TASRTSSSSVTSASAAKPA------APRVPLSQRTSAAKPATKPATAKPSTTSKPTTA-S 414
++ + +A AA A AP P Q ++ + PA + + P +
Sbjct: 316 HELAQKAAPLAAAQAALDAPAETATAPSAPAPQVSAESSPAQPGSYLLAAPGDAPLGELA 375
Query: 415 KPATATRPATTTSKP-ATTTSTDIEDE-MNQPFTPEELEA 452
+ +A S P A S + QPF E
Sbjct: 376 QAQSARERLAEESVPAAEPRSRLAPVAAVEQPFAEVESPL 415
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 32.6 bits (75), Expect = 1.1
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
P+P P A AP A A+ + AA +A AAP
Sbjct: 392 PSPGGGGGGPPGGGGAPG-----APAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446
Query: 326 KKPVAAPAPKPRPAT 340
P AAP P R +
Sbjct: 447 PAPAAAPQPAVRLNS 461
Score = 30.6 bits (70), Expect = 3.6
Identities = 18/74 (24%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
P PA P A+ + AA P+A A P AA A
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAA-------AAAPAAGGPAAALAAVPDAAAAAAA 445
Query: 334 PKPRPATAAPAPKP 347
P A PA +
Sbjct: 446 PPAPAAAPQPAVRL 459
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 32.0 bits (73), Expect = 1.1
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 228 PAAKPASKPLAKTTTTKTTTAAKPAISP--VKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
P+ K S AK T+ +AAK + +P K + P P+ A AAP+S
Sbjct: 227 PSPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKKAAPES 286
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAAPKPS 318
T+ +P A T ++ S++
Sbjct: 287 TSQSPSSAEPTSESPQTAGNSSLSSLGDYSDSD 319
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 32.0 bits (73), Expect = 1.1
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 309 STVSAAPKPSA-PKPAAPKKP-VAAPAPKPRPATAAPAPKPLTNGVTKRP 356
S+ A PK A PK A K+P V + A K T+ K+
Sbjct: 239 SSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 32.0 bits (73), Expect = 1.2
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 10/56 (17%)
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKP 328
KP K PK A +++PV A+ P KK
Sbjct: 244 KPKAKA----------KPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289
Score = 29.7 bits (67), Expect = 6.4
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 264 AKPAPK--PATKPAPKPTTAAPKSTTTAPKPAPVRKP 298
AKP K P T +P K+ +PA K
Sbjct: 243 AKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279
Score = 29.3 bits (66), Expect = 7.6
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 230 AKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAP-KPATKPAPK 277
AKP +K KT K +P + K + K T P K
Sbjct: 243 AKPKAKAKPKTAGIK-----RPVVKMEKTAEKGGRPASNGKRFTSPGRK 286
Score = 28.9 bits (65), Expect = 9.4
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 244 KTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPK 284
K AKP + +K+ K A K + +P
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPG 284
>gnl|CDD|234351 TIGR03773, anch_rpt_wall, putative ABC transporter-associated
repeat protein. Members of this protein family occur in
genomes that contain a three-gene ABC transporter operon
associated with the presence of domain TIGR03769. That
domain occurs as a single-copy insert in the
substrate-binding protein, and occurs in two or more
copies in members of this protein family. Members of
this family typically are encoded adjacent to the said
transporter operon and may serve as a substrate
receptor.
Length = 513
Score = 32.2 bits (73), Expect = 1.1
Identities = 20/126 (15%), Positives = 28/126 (22%), Gaps = 7/126 (5%)
Query: 280 TAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPA 339
TA KP V A P+ PA +P
Sbjct: 146 TADLADGGAKSKPETYTVVVGKVEVDKIDPARCATGAG------KPQNDANGPAAD-KPL 198
Query: 340 TAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKP 399
PA G + S A A A V + ++ + A
Sbjct: 199 FDDPASGVQALGDESAFSPGQQATVQIGKSVRLPADAPLGVAAVVVKAAPSTGSSDAEGG 258
Query: 400 ATAKPS 405
T +
Sbjct: 259 LTIIET 264
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 32.3 bits (73), Expect = 1.1
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSA----APKPS---APKPAAPKKP 328
P T S T P P P R+ A + KT TS+ APKP+ + A +
Sbjct: 159 PAGGTYILASGTYIP-PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPT 217
Query: 329 VAAPAPKPRPATAAPAPKPLTNGVTKRP 356
V PA +P+ +P + P
Sbjct: 218 VQNPAQQPQQQPQQQPVQPAQQPTPQNP 245
Score = 29.6 bits (66), Expect = 6.9
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 258 KTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKP 317
KT T++ + A KP +PT P T PA + + V A +P
Sbjct: 187 KTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQ------QPQQQPVQPAQQP 240
Query: 318 SAPKPAAPKKPVAAPAPKPR 337
+ PA + R
Sbjct: 241 TPQNPAQQPPQTEQGHKRSR 260
>gnl|CDD|236782 PRK10871, nlpD, lipoprotein NlpD; Provisional.
Length = 319
Score = 32.1 bits (73), Expect = 1.2
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 349 TNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTS 408
GV +P +T A + + S S+ + +A ++ L AA T P TA ++T+
Sbjct: 126 EQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKM-LPNNKPAATTVTAPVTAPTASTT 184
Query: 409 KPTTASKPATATRPATTTSKPATT 432
+PT +S T+TS P +T
Sbjct: 185 EPTASS---------TSTSTPIST 199
Score = 29.8 bits (67), Expect = 6.4
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 343 PAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTS--AAKP----- 395
AP L G T + +A+ T T +++T A AA+ P T A++P
Sbjct: 92 QAPYSLNVGQTLQVGNASGTPI-TGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYS 150
Query: 396 --ATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTST 435
+ + + K +KP + A T P +T++P ++++
Sbjct: 151 ESSGEQSANKMLPNNKPAATTVTAPVTAPTASTTEPTASSTS 192
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 32.4 bits (74), Expect = 1.2
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 223 TDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAA 282
T + A +S ++++ +T+ P + T P+ P PK ++ +
Sbjct: 7 TSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHT------PSILPLPKLSSPS 60
Query: 283 PKSTTTAPKPA-------PVRKPVASTITKTATSTVSAAPKPSA-PKPAAPKKPVA---A 331
P S T P P+++ A+ + ++ VS + PK A P +A A
Sbjct: 61 PPSVTLPPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFA 120
Query: 332 PAP 334
P P
Sbjct: 121 PVP 123
>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 422
Score = 32.2 bits (73), Expect = 1.2
Identities = 33/159 (20%), Positives = 43/159 (27%), Gaps = 13/159 (8%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
+ +P KP A A A + PA A A + PV A T
Sbjct: 1 SKSEREPVRIKPGAVPIVAAKAAEQTDPAAAEEAADA--DQPKAEPVHADQTDLEADGVG 58
Query: 371 VTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPA 430
+ A P P T + A A A + SKP
Sbjct: 59 QAGTEESAEAKAVEPEM-------PYPGSDAPADRTAASDANAEDAAA----ARSASKPT 107
Query: 431 TTTSTDIEDEMNQPFTPEELEAAIKSGLITTPGRDNIHY 469
T + Q + A I GLI G + Y
Sbjct: 108 ATRGPTPAAKRGQAGGEGVIAAGIDGGLIALAGAGALQY 146
Score = 31.5 bits (71), Expect = 1.7
Identities = 28/125 (22%), Positives = 36/125 (28%), Gaps = 27/125 (21%)
Query: 272 TKPAPKPTTAAPKSTTTAPKPA--------PVRKPVASTITKTATSTVSAAPKPSAPKPA 323
KP P AA + T P A P +PV + T V A
Sbjct: 10 IKPGAVPIVAAKAAEQTDPAAAEEAADADQPKAEPVHADQTDLEADGVGQAGT--EESAE 67
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
A K V P P A T + + + + SA+KP A R
Sbjct: 68 A--KAVEPEMPYPGSDAPADR---------------TAASDANAEDAAAARSASKPTATR 110
Query: 384 VPLSQ 388
P
Sbjct: 111 GPTPA 115
Score = 29.6 bits (66), Expect = 8.3
Identities = 53/270 (19%), Positives = 79/270 (29%), Gaps = 24/270 (8%)
Query: 204 GAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTT 263
GA AA A ++ A + A A T + + A T
Sbjct: 13 GAVPIVAAKAAEQTDPAAAEEAADADQPKAEPVHADQTDLEADGVGQ---------AGTE 63
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
K P P + AP T A + A+ + T + P P+A +
Sbjct: 64 ESAEAKAVEPEMPYPGSDAPADRTAA---SDANAEDAAAARSASKPTATRGPTPAAKRGQ 120
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAK----- 378
A + V A A A G P + A
Sbjct: 121 AGGEGVIAAGIDGGLIALAGAGALQYAGRVPAPGVGDAGLLEIAFLKSEIAGLKWFGPAN 180
Query: 379 -PAAPRV-PLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTS-- 434
PAAP L QR +A + A+ + TA P + PA ++ A
Sbjct: 181 APAAPDSSGLEQRIAALEAASAEPAPRVKALEVAVTALLPLESALPAERSTALAAVAELN 240
Query: 435 ---TDIEDEMNQPFTPEELEAAIKSGLITT 461
+E +N+P E AI + + T
Sbjct: 241 GRIAALEQSLNEPADDIEAALAIAATALKT 270
Score = 29.2 bits (65), Expect = 9.4
Identities = 22/128 (17%), Positives = 32/128 (25%), Gaps = 3/128 (2%)
Query: 99 PEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETN 158
P V + + L S + P S L Q I + A P
Sbjct: 153 PGVGDAGLLEIAFLKSEIAGLKWFGPANAPAAPDSSG---LEQRIAALEAASAEPAPRVK 209
Query: 159 SETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKAT 218
+ L +P E T +A A + + A A+A
Sbjct: 210 ALEVAVTALLPLESALPAERSTALAAVAELNGRIAALEQSLNEPADDIEAALAIAATALK 269
Query: 219 AAKKTDKP 226
A P
Sbjct: 270 TAIDRGGP 277
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 32.0 bits (73), Expect = 1.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAA-PAPKPLTNGVTKRP 356
+AAP +A AA P AA AP+P PA A V RP
Sbjct: 124 AAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQTLVIDRP 169
Score = 30.1 bits (68), Expect = 4.4
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAP 283
D+ PAAK A + A AA A + A A AP+P PAP+ A
Sbjct: 105 DRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAA---AAPAAAAAPEPPPAPAPEAVAAQS 161
Query: 284 KSTTTAPKP 292
+ T +P
Sbjct: 162 Q-TLVIDRP 169
Score = 28.9 bits (65), Expect = 9.2
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
AP K A + AA + AAP AAP P P PA A A + T
Sbjct: 108 APAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPA-AAAAPEPPPAPAPEAVAAQSQT 163
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 32.5 bits (74), Expect = 1.2
Identities = 13/56 (23%), Positives = 14/56 (25%), Gaps = 4/56 (7%)
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
T T A +P PAP A P A PA V
Sbjct: 899 TGRVATAPGGDAASAP----PPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAV 950
>gnl|CDD|227618 COG5301, COG5301, Phage-related tail fibre protein [General
function prediction only].
Length = 587
Score = 32.2 bits (73), Expect = 1.3
Identities = 31/145 (21%), Positives = 38/145 (26%), Gaps = 13/145 (8%)
Query: 203 VGAAAAGAAVAVKKATAAKK--TDKPGPAAKPASKPLAK----TTTTKTTTAAKPAISPV 256
A A A A D A S L + T A +S +
Sbjct: 227 ADTAGKSAQAANAATPLAVYAAMDALNEAGAANSSSLWNAATGAPSWIVTFAGSANLSNL 286
Query: 257 KKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK-----PAPVRKPVASTITKTATSTV 311
+AT A T TA TTA K + PV ATS
Sbjct: 287 SLSATGVAAGTYPKVTVDTKGAVTAGMALATTAGKLISGALTEQQTPVFGVGLNNATSNS 346
Query: 312 SAA--PKPSAPKPAAPKKPVAAPAP 334
S K + + APA
Sbjct: 347 SLTNHANGPVAKRYYYIQSMFAPAN 371
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 32.1 bits (74), Expect = 1.4
Identities = 11/45 (24%), Positives = 13/45 (28%)
Query: 219 AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTT 263
A K A PA P K K + K +K T
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 29.8 bits (68), Expect = 7.5
Identities = 26/123 (21%), Positives = 33/123 (26%), Gaps = 35/123 (28%)
Query: 201 LVVGAAAAGAAVAVKKATAAK----------KTDKP--------GP---AAKPASKPLAK 239
L +G A +A K K+ P GP K + L K
Sbjct: 740 LTIGLNRAVELLAEPKRPKEDPVPLPELGCPKSGAPFVLRDGRYGPYVKHGKANAT-LPK 798
Query: 240 TTTTKTTT--------AAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK 291
T+ T A KP K PA PA K A + K A +
Sbjct: 799 GRETRAPTVEEALELLAEKPE-----KLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASE 853
Query: 292 PAP 294
Sbjct: 854 KDG 856
Score = 29.4 bits (67), Expect = 9.9
Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKT 259
A A K A PA PA K A + KT + K T
Sbjct: 810 ALELLAEKPEKLRYLADA-----PAKDPAGKKAAVKFSRKTKQQYVASEKDGKAT 859
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 30.9 bits (70), Expect = 1.5
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 321 KPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPA 380
K AA + P A+ + N V K + T +++ T AS+ +
Sbjct: 86 KQAAES--MKRSYAANDPEKASDEAHTIHNPVVKD--NEAAHEGVTPAAAQTQASSPEQK 141
Query: 381 APRVPLSQRTSAAKPATKPATAKPSTTSKP 410
P AA K A PS++ KP
Sbjct: 142 PETTPEPVVKPAADAEPKTAAPSPSSSDKP 171
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 31.6 bits (72), Expect = 1.5
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP 325
PAP P P+ +P + + P PA P + +T+ + + P P
Sbjct: 214 PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Query: 326 KKP 328
Sbjct: 274 ITL 276
Score = 31.6 bits (72), Expect = 1.6
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 7/139 (5%)
Query: 211 AVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVK-KTATTTAKPAPK 269
A + KA + PGP P + T + +A+ + P+
Sbjct: 135 AARIHKALKEGEDPNPGP---PLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSS 191
Query: 270 PATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAP---K 326
P P P + ++ PAP + + T + P A P P
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV 251
Query: 327 KPVAAPAPKPRPATAAPAP 345
P++ P P A+A PAP
Sbjct: 252 PPLSTAKPTPPSASATPAP 270
Score = 30.0 bits (68), Expect = 4.8
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 262 TTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPK 321
+ + P P++ + P + T +P P P P ST KP+ P
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLST----AKPTPPS 263
Query: 322 PAAPKKPVAAPAPKPR 337
+A P+
Sbjct: 264 ASATPAPIGGITLDDD 279
Score = 29.3 bits (66), Expect = 8.2
Identities = 18/131 (13%), Positives = 27/131 (20%), Gaps = 17/131 (12%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK-PSAPKP 322
P A ++ + P V S + + + P AP
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218
Query: 323 AAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
P +P P+ P V S AKP P
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAP----------------PPPPVQQVPPLSTAKPTPP 262
Query: 383 RVPLSQRTSAA 393
+
Sbjct: 263 SASATPAPIGG 273
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 32.2 bits (73), Expect = 1.5
Identities = 17/86 (19%), Positives = 22/86 (25%), Gaps = 1/86 (1%)
Query: 259 TATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS 318
AP A PV A+T + V P+
Sbjct: 320 EGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPT 379
Query: 319 APKPAAPKKP-VAAPAPKPRPATAAP 343
+ + P VA P A AAP
Sbjct: 380 SLANVSHADPAVAQPTQAATLAGAAP 405
Score = 31.0 bits (70), Expect = 3.0
Identities = 14/84 (16%), Positives = 21/84 (25%)
Query: 300 ASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSA 359
T + P P AA + P + A + A + +P A
Sbjct: 338 LLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPTQA 397
Query: 360 TTTASRTSSSSVTSASAAKPAAPR 383
T A + A R
Sbjct: 398 ATLAGAAPKGATHLMLEETLADLR 421
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 32.1 bits (73), Expect = 1.5
Identities = 14/55 (25%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 299 VASTITKTATSTVSAAPK-PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGV 352
VA SA P AP P APA A AA +
Sbjct: 41 VAMLDEDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDL 95
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 31.6 bits (71), Expect = 1.6
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 12/91 (13%)
Query: 264 AKPAPKPATKPAPKPTTAAPKST------------TTAPKPAPVRKPVASTITKTATSTV 311
PA P +P P AP T P+P P + +
Sbjct: 19 VPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPA 78
Query: 312 SAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
AAP + + PA P
Sbjct: 79 PAAPPAAGAALPEALEVPPPPAFTPNGEIVG 109
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 31.6 bits (71), Expect = 1.6
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 290 PKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA-------- 341
P P P K + + + P +P+P P +PV+ RPA A
Sbjct: 201 PIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYI 260
Query: 342 --APAPKPLTNGV 352
P PK L NGV
Sbjct: 261 VNEPPPK-LPNGV 272
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 32.1 bits (72), Expect = 1.7
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 18/156 (11%)
Query: 41 DDLTFETKESSFQE--ETHTETKVESSFQETHVALETNLDDFTSQETKLDDFISAHTEKT 98
+DL F+ ++ + + + + VE + +E D +E +D+ + H
Sbjct: 413 EDLLFDLEKQKYMDMLDGSEDESVEDNEEEHSG-------DANEEELSVDEHVEEHN--- 462
Query: 99 PEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETN 158
+ E+ DD SV ++V Q NE P V + E V P + N
Sbjct: 463 --ADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDEN 520
Query: 159 SETAEKETPLSEVPV----IPQEAQTVESAEESTAS 190
E + + E + + +E T E E AS
Sbjct: 521 EEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPAS 556
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 31.8 bits (73), Expect = 1.7
Identities = 24/88 (27%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTIT---KTATSTVSAAPKPSAPKPAAPK-KPVAA 331
P P A + A T+ K VS S PAAP P AA
Sbjct: 459 PVPQAEAAQ----PAAKAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPAAA 514
Query: 332 PAPKPRPATAAPAPKPLTNGVTKRPVSA 359
A P A P PL + K V+
Sbjct: 515 AAAAPAAAAGEPVTAPLAGNIFKVIVTE 542
>gnl|CDD|222851 PHA02358, PHA02358, hypothetical protein.
Length = 194
Score = 31.0 bits (70), Expect = 1.8
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 135 PAVDLTQDIVEEKEAVVTPTDETNS---------------ETAEKETPLSEVPVIPQEAQ 179
P + + ++ K + ET + T + V V +
Sbjct: 63 PKILFSTKSLKNKGGFLGKGTETTQRTDEYTMDGTRNHGGAVSNGRTWIDPVAVGSLGEK 122
Query: 180 TVESAEESTASSDLAAKVAGALVVGAAAAGAAVAV 214
+ E +D A+ G +V + A AA A+
Sbjct: 123 KSSAKSEECIEADGGARSTGRMVGSSIGAAAAPAL 157
>gnl|CDD|177646 PHA03418, PHA03418, hypothetical E4 protein; Provisional.
Length = 230
Score = 31.2 bits (70), Expect = 1.9
Identities = 24/97 (24%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
+ P P P+ P P T P KP ++P T
Sbjct: 35 LLPAPHHPNPQEDPDKNPSPPPDPPLTPRPPAQPNGHNKPPVTKQP-----GGEGTEEDH 89
Query: 313 AAPK-PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
AP A P K A P P AA AP L
Sbjct: 90 QAPLAADADDDPRPGKRSKADEHGPAPGRAALAPFKL 126
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 31.3 bits (72), Expect = 1.9
Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 37/138 (26%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT--- 349
PV +A I + + +AA + + PA P AA A PA AA P
Sbjct: 67 VPVGSVIA-VIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAA 125
Query: 350 -------------------------NG-VTKRPV-----SATTTASRTSSSSVTSASAAK 378
G +TK V +A A+ ++++ +AA
Sbjct: 126 KASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAA 185
Query: 379 PAAPRVPLS--QRTSAAK 394
RVPLS ++ A +
Sbjct: 186 EGEERVPLSGMRKAIAKR 203
Score = 31.3 bits (72), Expect = 2.1
Identities = 20/111 (18%), Positives = 27/111 (24%), Gaps = 18/111 (16%)
Query: 251 PAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA---------- 300
+ + A P P PA A AA + A P
Sbjct: 82 AEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVD 141
Query: 301 -STITKTATSTV-------SAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
ST+ + +AA + AA A PA P
Sbjct: 142 LSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVP 192
Score = 30.1 bits (69), Expect = 4.8
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 180 TVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPA--AKPASKPL 237
+E E+ A++ A A AA AA A A AA A A PA + L
Sbjct: 75 VIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKL 134
Query: 238 AKTT----TTKTTTAAKPAISP--VKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPK 291
A+ +T + I+ V+ A A A A A P AA
Sbjct: 135 ARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERV--P 192
Query: 292 PAPVRKPVASTITK 305
+ +RK +A + +
Sbjct: 193 LSGMRKAIAKRMVE 206
>gnl|CDD|219401 pfam07404, TEBP_beta, Telomere-binding protein beta subunit (TEBP
beta). This family consists of several telomere-binding
protein beta subunits which appear to be specific to the
family Oxytrichidae. Telomeres are specialised
protein-DNA complexes that compose the ends of
eukaryotic chromosomes. Telomeres protect chromosome
termini from degradation and recombination and act
together with telomerase to ensure complete genome
replication. TEBP beta forms a complex with TEBP alpha
and this complex is able to recognise and bind ssDNA to
form a sequence-specific, telomeric nucleoprotein
complex that caps the very 3' ends of chromosomes.
Length = 375
Score = 31.2 bits (70), Expect = 2.0
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT 272
A+ KA K AK K AK+ K +A K + + + +
Sbjct: 228 ALNKAADHTDVAKVKGGAKGKGKAAAKSAKGKKLSAKK---------GDSASSADVRKSV 278
Query: 273 KPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
K T P S P+ + K A T + V A P PS K
Sbjct: 279 DKIVKYTPNKPSSRKETPQKSQAGKSSAKKTTTGSKKAVPANPSPSGKKST 329
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 31.3 bits (71), Expect = 2.0
Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 280 TAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
+AP A + VR P A A S P P+ P AP P
Sbjct: 98 VSAPTKKKKAMPKSVVRAPKPLENPVPAQ----AESSGSKPVPSIPVSTPEVKAPAP 150
Score = 31.3 bits (71), Expect = 2.2
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 237 LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR 296
L KT KT K +P KK P P P A + P
Sbjct: 83 LTKTFEDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVST 142
Query: 297 KPV---ASTITKTATSTVSAAPKPSAPKPAAPKKP 328
V A +T + + P +KP
Sbjct: 143 PEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 31.5 bits (71), Expect = 2.1
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 22/101 (21%)
Query: 291 KPAPVRKPVASTITKTATSTVSAAPKPSAPKPAA----PKKPVAAPAPKP---------- 336
KP P RKP + +AA P AA VAA +
Sbjct: 462 KPRPRRKP------RVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNG 515
Query: 337 RPATAA-PAPKPLTNG-VTKRPVSATTTASRTSSSSVTSAS 375
RP A P P+ ++P T R ++ S S S
Sbjct: 516 RPVEGAEPVSTPVPAPAAPRKPTQVVATPVRAAAKSSGSPS 556
>gnl|CDD|236643 PRK10044, PRK10044, ferrichrome outer membrane transporter;
Provisional.
Length = 727
Score = 31.7 bits (72), Expect = 2.1
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 183 SAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKAT------AAKKTDKPGPAAKPASKP 236
+A+ + + +A VA A+ + A AAV K+ T A + GPAA A+K
Sbjct: 6 TAQPNHSLRKIAVVVATAVSGMSVYAQAAVEPKEETITVTAAPAPQESAWGPAATIAAKR 65
Query: 237 LAKTTTTKTTTAAKPAISPVKKT 259
A T TKT T P++KT
Sbjct: 66 SA--TGTKTDT-------PIEKT 79
Score = 29.7 bits (67), Expect = 6.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 240 TTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
T + + A+ A+ P ++T T TA PAP+ + P T AA +S T P+ K
Sbjct: 22 TAVSGMSVYAQAAVEPKEETITVTAAPAPQESAW-GPAATIAAKRSATGTKTDTPIEK 78
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.4 bits (71), Expect = 2.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
+ A + A P P PK +KP ++P PK +A P+
Sbjct: 204 SSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSS 245
Score = 31.0 bits (70), Expect = 3.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 305 KTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
K ++S AAPK P ++ V PA P P + P+ P +
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGD 247
>gnl|CDD|215243 PLN02444, PLN02444, HMP-P synthase.
Length = 642
Score = 31.4 bits (71), Expect = 2.3
Identities = 16/74 (21%), Positives = 22/74 (29%)
Query: 356 PVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASK 415
V +S +S R ++A AT T PT S+
Sbjct: 5 VVCNNANSSAPLKLPNSSLLPGFDVVVRAQALAVSAARLKKESTATRATLTFDPPTGNSE 64
Query: 416 PATATRPATTTSKP 429
A T+P S P
Sbjct: 65 KAKQTKPTVDPSAP 78
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 31.6 bits (72), Expect = 2.3
Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 173 VIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKP 232
+ Q A + LAA +A GAAAA AA + TAA PA +
Sbjct: 433 LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAAARAAGF--EGTAAVLPSVAVPAGET 490
Query: 233 ASKPLAKTTTTKTT 246
L K
Sbjct: 491 GPVALWPVPAGKGK 504
Score = 30.9 bits (70), Expect = 4.1
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 293 APVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGV 352
AP ++ V +T +A + A + P A A + +
Sbjct: 315 APGKRIVVATNNDSAYRAAADLLAAGIAVVA-----IIDARADVSPEARAEARELGIEVL 369
Query: 353 TKRPVSATTTASRTSSSSVTSASAA 377
T V+AT R S +V A
Sbjct: 370 TGHVVAATEGGKRVSGVAVARNGGA 394
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and repair].
Length = 1135
Score = 31.6 bits (72), Expect = 2.3
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSA 319
A +P P A + T PV PV + T T + P+
Sbjct: 881 VKRALAAAGIAWQEPHPAQGKAEWRLRFTRRDWDPVGLPVEAAQTDTLEALPDWLRAPAP 940
Query: 320 PKPAAPKKPVAAPAPKPRPATAAPAP 345
+PA P+ AP+ +A
Sbjct: 941 AEPALPRP--LAPSGLGGAIDSALPG 964
>gnl|CDD|235867 PRK06819, PRK06819, flagellin; Validated.
Length = 376
Score = 31.3 bits (71), Expect = 2.4
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Query: 135 PAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEV-PVIPQEAQTVESAEESTASSDL 193
A+D + V + +D + + +V V +
Sbjct: 190 TALDTSVTGVTTT-TALDFSDISTFAKGATVHGIGDVGTDGAYADGYVIRTTDGKQYKGE 248
Query: 194 AAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAK 239
G + A G + AT + + PA K + PL
Sbjct: 249 VDATNGKVTFADDANGDPITD--ATKLEAAAQFSPAGKATASPLET 292
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 30.3 bits (68), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
SAP+ A + P A + RPA PAP+P
Sbjct: 130 QSAPRQQAQR-PQQAAQQQSRPAPQQPAPQP 159
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed.
Length = 574
Score = 31.2 bits (70), Expect = 2.4
Identities = 18/77 (23%), Positives = 28/77 (36%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
++ + T ++A P P A P PAP A PA P ++ +A
Sbjct: 301 SEQVSDTSTSATGPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQAAAAAAPTESSKSA 360
Query: 364 SRTSSSSVTSASAAKPA 380
+R T +PA
Sbjct: 361 TRNYELDRTLQHTRQPA 377
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 31.6 bits (72), Expect = 2.4
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 289 APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
PK A +K A AT AA K + K A KK A
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 31.2 bits (71), Expect = 2.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTT 247
AAAA A A AA K +K PA K AK T + T
Sbjct: 820 AAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 30.8 bits (70), Expect = 3.5
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 221 KKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKP 270
+ K A K A+K A T AAK A P KKTA
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKA--PAKKTAAKKTAARKTG 862
Score = 30.0 bits (68), Expect = 5.7
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 232 PASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTA 281
+P A A A + +K A A PA K A K T
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKA-PAKKTAAKKTAARKTG 862
Score = 30.0 bits (68), Expect = 7.2
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 249 AKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTA 289
A A K A A K A K AP TAA K+
Sbjct: 820 AAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 29.6 bits (67), Expect = 9.2
Identities = 11/49 (22%), Positives = 15/49 (30%)
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
R+P A+ KTA +AA + A A K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 29.6 bits (67), Expect = 9.2
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 255 PVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT 308
++ AK AT A A K AP +K A T
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAA------KKAPAKKTAAKKTAARKT 861
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 2.4
Identities = 61/270 (22%), Positives = 86/270 (31%), Gaps = 8/270 (2%)
Query: 159 SETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKAT 218
++ A+K + ++A+ + A+E+ ++ A K A A A A A KA
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
Query: 219 AAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKP 278
A D+ A + A K K A + KK A K A + K
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRP 338
AA K K K A K A A A K A K K
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD---EAKKKAEEAKKAEEAKKKAEE 1468
Query: 339 ATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATK 398
A A K K A + + + A AK AA + A+ A K
Sbjct: 1469 AKKADEAKKKAEEAKK-----ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Query: 399 PATAKPSTTSKPTTASKPATATRPATTTSK 428
AK + +K +K A + A K
Sbjct: 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
>gnl|CDD|215039 PLN00041, PLN00041, photosystem I reaction center subunit II;
Provisional.
Length = 196
Score = 30.7 bits (69), Expect = 2.5
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 217 ATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAP 276
T A K P A SK +K + +A A+ AK AP T P
Sbjct: 4 TTPASSGRKLVPWASFLSKSTSKA---PASLSATRAVRAAAAAEEAAAKEAPVGFTPPTL 60
Query: 277 KPTTAAP 283
P T +P
Sbjct: 61 NPNTPSP 67
>gnl|CDD|218950 pfam06236, MelC1, Tyrosinase co-factor MelC1. This family consists
of several tyrosinase co-factor MELC1 proteins from a
number of Streptomyces species. The melanin operon
(melC) of Streptomyces antibioticus contains two genes,
melC1 and melC2 (apotyrosinase). It is thought that
MelC1 forms a transient binary complex with the
downstream apotyrosinase MelC2 to facilitate the
incorporation of copper ion and the secretion of
tyrosinase indicating that MelC1 is a chaperone for the
apotyrosinase MelC2.
Length = 124
Score = 29.9 bits (67), Expect = 2.5
Identities = 12/42 (28%), Positives = 13/42 (30%)
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
+ AA A A P AA P P AP P
Sbjct: 1 LGAAAALAAAAGLAAGGEAAAAPDAAAHPGPSTGRGAPGGAP 42
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 31.3 bits (71), Expect = 2.5
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 202 VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKT--TTTKTTTAAKPAISPVKKT 259
VV + AA+A + A A ++D+P A PL +T AI +T
Sbjct: 209 VVKPSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDGVRYPTVDVAIDRAART 268
Query: 260 ATTTAKPAPKPATKPAPKPTTAA 282
AT T K PK A +P A
Sbjct: 269 ATITLK-GPK-----AAQPADIA 285
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 29.8 bits (67), Expect = 2.8
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 274 PAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA 333
PA A P + P P P + S + AP+PAA A P+
Sbjct: 24 PAQAAAPAQP---ASTPVPVP--------------TEASPQVEAQAPQPAAAAGADAMPS 66
Query: 334 PKP 336
P P
Sbjct: 67 PMP 69
Score = 29.4 bits (66), Expect = 3.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAP------VRKPVASTITK 305
A A +PA+ P P PT A+P+ AP+PA + P+ TI K
Sbjct: 23 APAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILK 74
Score = 28.2 bits (63), Expect = 8.6
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 314 APKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNG 351
AP +A PV P + P A AP+P
Sbjct: 23 APAQAAAPAQPASTPVPVPT-EASPQVEAQAPQPAAAA 59
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 31.1 bits (70), Expect = 2.8
Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 250 KPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTAT- 308
KPA+SP TA A P T AP TAA P P+ P ST+ ++
Sbjct: 171 KPAMSP--STARIDAWVTPPVYTGRAPIFLTAASNKDLGTPGSGPITVPQGSTLLVRSSG 228
Query: 309 ------STVSAAPKPSAPKPAAPKKPVAAP 332
++A KP K A P
Sbjct: 229 GDEETVLDIAAGGGVVEIKPDDAKAETAKP 258
Score = 29.9 bits (67), Expect = 6.4
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 12/124 (9%)
Query: 218 TAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKP--APKPATKPA 275
TAA D P + P + P T +++ + + + K T
Sbjct: 199 TAASNKDLGTPGSGPITVPQGSTLLVRSSGGDEETVLDIAAGGGVVEIKPDDAKAETAKP 258
Query: 276 PKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
P + APK T ITK T V+ + P + K P A A +
Sbjct: 259 ETPRSDAPKGTRNR----------HYRITKDGTLRVAGSSAPWSFTATPDKPPAIAFAKE 308
Query: 336 PRPA 339
P+
Sbjct: 309 PQRQ 312
>gnl|CDD|178927 PRK00203, rnhA, ribonuclease H; Reviewed.
Length = 150
Score = 29.8 bits (68), Expect = 2.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 777 TVKLAWIKGHEGIKGNVEVDRLAK 800
+K W+KGH G N D LA+
Sbjct: 114 QIKWHWVKGHAGHPENERCDELAR 137
>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 31.1 bits (70), Expect = 3.1
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 457 GLITTPGRDNIHYPMIENLPDCNKYLNIMKMICNKHWGMNPTIGLNYYKATI 508
GL + + + + LP+ K N + K G + G++ K TI
Sbjct: 109 GLYSKNYNEVRTFKFVYTLPEAIKVYNDVAQFNRKLVGQDWQQGISSVKVTI 160
>gnl|CDD|236507 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 31.0 bits (71), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAA 342
VSAAP +A PAA ++ +P + A A
Sbjct: 375 VSAAPAAAAAAPAAKEEEKKPASPWRKYALMA 406
Score = 30.2 bits (69), Expect = 5.2
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 266 PAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVA 300
P P AP AAP + KPA + A
Sbjct: 369 PPPPIQVSAAPAAAAAAPAAKEEEKKPASPWRKYA 403
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 29.4 bits (65), Expect = 3.4
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 227 GPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKST 286
G A+ A ++TTT P T TTT T TT +T
Sbjct: 27 GEGQYDAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTT 86
Query: 287 TTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
TT P+ +T ++ T+T + AP + AP +A
Sbjct: 87 TTTEAPSK-----NTTTSEAPTTTDTRAPSSIREIDGSLGSSAWVCAPLLLAVSALAY 139
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 30.5 bits (69), Expect = 3.4
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 254 SPVKKTATTTAKPAPKPATKPAPKPT-TAAPKSTTTAPKPAP---VRKPVASTITKTATS 309
+ AT + P+ +P + AP T + A + + +P V P+ +
Sbjct: 237 TAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDMVYVPLDAYNQ---LL 293
Query: 310 TVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA 341
A +P P+ AP +A PAP P P
Sbjct: 294 AGQAFNQPPDPQGPAPPAELAPPAPAPPPPAN 325
>gnl|CDD|177677 PLN00045, PLN00045, photosystem I reaction center subunit IV;
Provisional.
Length = 101
Score = 28.8 bits (64), Expect = 3.4
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAP 343
A A SA PAA P AAPA KP+P P
Sbjct: 1 VVRAAEDAEPATSSSAASPAAAAAPAAAPAAKPKPPPIGP 40
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 30.2 bits (68), Expect = 3.5
Identities = 29/107 (27%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 231 KPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTT-TA 289
AS A T K AA+ A + KK A A PAP A P A T T
Sbjct: 106 ADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDLTKITG 165
Query: 290 PKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
PA +K + +T A AA + K K
Sbjct: 166 VGPALAKKLNEAGVTTFAQ---IAALTDADIAKIDEKLSFKGRIEKD 209
Score = 30.2 bits (68), Expect = 3.7
Identities = 18/59 (30%), Positives = 19/59 (32%)
Query: 194 AAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPA 252
GA V AA A KK A K P AA P + A T PA
Sbjct: 111 VKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDLTKITGVGPA 169
Score = 29.4 bits (66), Expect = 6.8
Identities = 25/109 (22%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT--NGVTK 354
V + + A A K AAPK A A PA AA LT GV
Sbjct: 109 SGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDLTKITGVGP 168
Query: 355 RPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAK 403
A T+ + + + + A A LS + K +
Sbjct: 169 ALAKKLNEAGVTTFAQIAALTDADIAKIDEKLSFKGRIEKDGWIEQAKE 217
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 30.2 bits (68), Expect = 3.5
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 270 PATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPV 329
PA + +A P++++T+ P A+ + + A + + +P++
Sbjct: 102 PAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRP 161
Query: 330 AAPAPKPRPATA 341
P P+T
Sbjct: 162 PVSGEPPTPSTP 173
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 30.2 bits (68), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
P++P A P A +P P PA+ PA P
Sbjct: 163 PASPPAAQPAPSAPASSPPPTPASPPPAKAP 193
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 30.2 bits (68), Expect = 3.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 307 ATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLT 349
T P P PA+ +APAP P P + PA + +
Sbjct: 90 PRRTEPQEPDPLDESPASAAPVASAPAPAPSPQSPKPASRRAS 132
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 30.3 bits (68), Expect = 3.6
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Query: 306 TATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASR 365
A S S + A P + + + + A++ P P S++ +
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLN----APASPPSSSPARNT 56
Query: 366 TSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAK-PSTTSKPTTASKPATATRPAT 424
+SSSS + + R LS R + + A A + + +T+ + + T
Sbjct: 57 SSSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRT 116
Query: 425 TTSKPATTTSTDI 437
T+S ++ +
Sbjct: 117 TSSDLSSGNGPSV 129
>gnl|CDD|234184 TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119
family. This protein family is one of two related
families in type VI secretion systems that contain an
ImpA-related N-terminal domain (pfam06812) [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 301
Score = 30.4 bits (69), Expect = 3.7
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPAT---AAPAPKPLTN 350
A AAP APA P PAT A P+P +
Sbjct: 1 QRAQNEAAPAAVPTAPASAPAPATTAAAPQPPEPPAS 37
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 30.6 bits (69), Expect = 3.7
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 11/113 (9%)
Query: 304 TKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTA 363
+ SA P S+ P+AP P P P + + + + A
Sbjct: 212 KGPVAAAKSALPAVSSSAPSAPPPPPPPPPPSVPTISNSVESASSDS----KGGRGAVFA 267
Query: 364 SRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
+TS +V +T P + + S+ KP P
Sbjct: 268 ELNKGEGITS------GLKKVTDDMKTH-KNPELRAQSGPTSSGPKPGKPPAP 313
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 30.7 bits (69), Expect = 3.8
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 254 SPVKKTATTTAKPAPKPATKPAPKPTTA-APKSTTTAPKPAPVRKPVASTITKTATSTVS 312
SP +AT + A PAP ++A + + +PA R P + S S
Sbjct: 4 SPNLSSATAASPAKSLSAFTPAPTRSSASSARFPAFLARPAAARSP-------SLASRAS 56
Query: 313 AAPKPSAPKPAAPKKP 328
+A S +P ++P
Sbjct: 57 SALAASPSRPQVARRP 72
Score = 29.6 bits (66), Expect = 9.6
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 327 KPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSAT---TTASRTSSSSVTSASAAKPAAPR 383
+A A P + +A P P + + A A+R+ S + ++SA + R
Sbjct: 6 NLSSATAASPAKSLSAFTPAPTRSSASSARFPAFLARPAAARSPSLASRASSALAASPSR 65
Query: 384 VPLSQR 389
+++R
Sbjct: 66 PQVARR 71
>gnl|CDD|165124 PHA02757, PHA02757, hypothetical protein; Provisional.
Length = 75
Score = 28.1 bits (62), Expect = 3.9
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 600 YCKTKPTPPI-VNSYCNISHQYGRELITYEKPIIYNYDYDIGKVSLQ 645
C P+ P N C + + E++ +K I D D G + Q
Sbjct: 16 VCVITPSGPFDFNIACGVDQEKANEILDKDKACIIEIDEDSGMLFSQ 62
>gnl|CDD|226266 COG3743, COG3743, Uncharacterized conserved protein [Function
unknown].
Length = 133
Score = 29.0 bits (65), Expect = 4.2
Identities = 21/74 (28%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
A A K ATA D P AA+ A TT + AK A + + A
Sbjct: 1 ARPMAKAAPEKAATAKAGADAP-AAAEAA-------TTVEAAPDAKAAAAVKAPVSAPEA 52
Query: 265 KPAPKPATKPAPKP 278
P A PA
Sbjct: 53 AADPAGADAPAAPK 66
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 30.2 bits (68), Expect = 4.3
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 3/129 (2%)
Query: 214 VKKATAAKKTDKPGPA-AKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT 272
V + +K + P A++ + +A+ I PV + + PA T
Sbjct: 61 VGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKI-PVPQPPQISDPPAHPQPT 119
Query: 273 KPAP-KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAA 331
+PA + P+ AP +PV S + A TV A +P +P
Sbjct: 120 QPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPE 179
Query: 332 PAPKPRPAT 340
PR T
Sbjct: 180 VKRPPRKDT 188
>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146).
This is a family of proteins conserved from plants to
humans. In Dictyostelium it is annotated as Mss11p but
this could not be confirmed. Mss11p is required for the
activation of pseudo-hyphal and invasive growth by
Ste12p in yeast.
Length = 890
Score = 30.6 bits (69), Expect = 4.3
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 89 DFISAHTEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKE 148
DF + ++ + ++E+ D+ + P + SPS A DL E
Sbjct: 550 DFENNSLSAAKKMEQAEDELADEETDQE-QPESLEPQLQGSSTSPSDASDLNFSTASSSE 608
Query: 149 AVVTPTDETNSETAEKETPLSE 170
A +D T+ T E
Sbjct: 609 ASSEESDNYARPTSRSGTDEEE 630
>gnl|CDD|226005 COG3474, COG3474, Cytochrome c2 [Energy production and conversion].
Length = 135
Score = 29.3 bits (66), Expect = 4.5
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 183 SAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGP 228
+A+E+ A++ AA VA A +G AAAG V KK A +K GP
Sbjct: 8 AAQEAAAAASAAAAVAIAAALGDAAAGEKVF-KKCQACHSIEKGGP 52
>gnl|CDD|220253 pfam09469, Cobl, Cordon-bleu domain. The Cordon-bleu protein
domain is highly conserved among vertebrates. The
sequence contains three repeated lysine, arginine, and
proline-rich regions, the KKRAP motif. The exact
function of the protein is unknown but it is thought to
be involved in mid-brain neural tube closure. It is
expressed specifically in the node.
Length = 349
Score = 30.3 bits (68), Expect = 4.6
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 344 APKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKP-AAPRVPLSQRTSAAKPATKPATA 402
A P + V KR + + S S V S K AP P+ TS + P P +
Sbjct: 244 ATAPASPLVNKRTFTLGNSISLPYISGVGPKSEPKKRRAPPPPMP--TSQSVPQDLPPSC 301
Query: 403 KPSTTSKPTTASKPATATRPATTTSKPATTTSTDIE 438
+ S T P R + + ++ + +
Sbjct: 302 IVKSMSVDETDKTPEEVGRVRAGSLQLSSLSGGQSD 337
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 30.5 bits (69), Expect = 4.6
Identities = 5/49 (10%), Positives = 8/49 (16%)
Query: 286 TTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
T A + S + PA +
Sbjct: 226 TAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARS 274
Score = 30.1 bits (68), Expect = 6.2
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 298 PVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPA 344
A T+ V + P APA + A +
Sbjct: 228 VAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARS 274
>gnl|CDD|237541 PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.
Length = 472
Score = 30.1 bits (68), Expect = 4.7
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 7/138 (5%)
Query: 201 LVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISP-VKKT 259
++V A A A + A A +K G + A K +A T A P P +
Sbjct: 42 VLVMALVAADRAAKQNAPAQGPKEKAGNTSMFA-KEIAGDQTGGLIEPASPLKVPEMPTG 100
Query: 260 ATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVAST-----ITKTATSTVSAA 314
+ P +P AP A P + R +A K T+ A
Sbjct: 101 PASAPLPIARPDNPDAPPTPPANPGNPGQVNDDEAQRIRMAKLQMFEEAVKAKTTVRVDA 160
Query: 315 PKPSAPKPAAPKKPVAAP 332
P+ + P P P
Sbjct: 161 PRSNGSAPGGPSTYTGTP 178
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 30.4 bits (68), Expect = 4.7
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 253 ISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVS 312
++P K+ + T P + ++P+P A P+ A K +K + KT+ T S
Sbjct: 240 LNPRKRDVSATPTPPAEARSRPSPF-GAARPREEVLAEKGLDWKKLDSEIEAKTSRPTSS 298
Query: 313 AAPKPSAPKPAAPKKPVAA---PAPKPRP 338
+ +PS+ + + + P + KPRP
Sbjct: 299 QSSRPSSAQSSRSESPGSQGSEGVVKPRP 327
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 29.5 bits (66), Expect = 4.7
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKS 285
+ P+S + + T + PA P ++ T P P KP + KS
Sbjct: 60 AASSKAPSSSSKSSSQETISIPPTPPARRPSRRWDQTGRFPNPTTGAKPTLRAARREYKS 119
Query: 286 T 286
Sbjct: 120 W 120
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members of
this family confer resistance to the metalloid element
tellurium and its salts.
Length = 98
Score = 28.5 bits (64), Expect = 4.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTS 367
AAP P P PA APAP P V+ ++ T S
Sbjct: 2 AAPVPPPAPAPPAPAPPPAAPPVSLSKITLTKEGPSVS 39
Score = 27.4 bits (61), Expect = 10.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 325 PKKPVAAPAPKPRPATAAPAPKP 347
P PV PAP P PA P
Sbjct: 1 PAAPVPPPAPAPPAPAPPPAAPP 23
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 30.0 bits (67), Expect = 4.8
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 15/171 (8%)
Query: 254 SPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSA 313
+P+ A P P ++ P+T+ +P ++ V T + +
Sbjct: 122 TPIPCFAEVPVFPRPYQSSGDDDGPSTSRGSGVARV-RPTVIQHRVDKT---RPSDYENH 177
Query: 314 APKPSA-PKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVT 372
P+P A P+ +P AA P+P + G + P + T + R + V
Sbjct: 178 RPRPFAMANPSWVDEPDAAAQRPPQPGPS---------GQNRSPRTPTLSNVRVLDAPVA 228
Query: 373 SASAAKPAAPRVP-LSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
+ P+ PR L + A P+ S P +P
Sbjct: 229 TNRGEAPSPPRTDTLDPDPAIAGPSRAVNRTPSPRPSSPPPEIDEEYNAQP 279
>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1. The
overall function of the full-length Med25 is efficiently
to coordinate the transcriptional activation of RAR/RXR
(retinoic acid receptor/retinoic X receptor) in higher
eukaryotic cells. Human Med25 consists of several
domains with different binding properties, the
N-terminal, VWA, domain, this SD1 - synapsin 1 - domain
from residues 229-381, a PTOV(B) or ACID domain from
395-545, an SD2 domain from residues 564-645 and a
C-terminal NR box-containing domain (646-650) from
646-747. This The function of the SD domains is unclear.
Length = 168
Score = 29.4 bits (65), Expect = 5.0
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 318 SAPKPAAPKKPVAAPAPKPRPATAAPAPK----PLTNGVTKRPVSATTTASRTSSSSVTS 373
S P P K+PV+ P P + PAP+ P+T + P + + A+ ++
Sbjct: 7 SVPGPLQSKQPVSLPPAAVLPPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAHDAAQKAVE 66
Query: 374 ASAAKPAAPR----------------VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPA 417
A+ + + P SQ + P P KPS S+ + + +
Sbjct: 67 AAKNQKQGLKNRFSPITPLQQAPIVGPPFSQAPAPVLPPGPPGAPKPSPASQLSLVTTVS 126
Query: 418 TATRPATT 425
+ A
Sbjct: 127 PGSGLAPV 134
>gnl|CDD|219130 pfam06674, DUF1176, Protein of unknown function (DUF1176). This
family consists of several hypothetical bacterial
proteins of around 340 residues in length. Members of
this family contain six highly conserved cysteine
residues. The function of this family is unknown.
Length = 338
Score = 30.0 bits (68), Expect = 5.1
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 306 TATSTVSAAPKP-SAPKPAAPKKPVAAPAPKPRPATAAPAPKPL 348
T T+ V KP S+ PA P + A P A PA L
Sbjct: 151 TVTALVRKGTKPASSVPPAPPLPVIRAAPAPPAAAPLDPAEARL 194
Score = 29.3 bits (66), Expect = 9.2
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 310 TVSAAPKP-SAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
TV+A + + P + P A P P R A A PA PL + RT+
Sbjct: 151 TVTALVRKGTKPASSVP---PAPPLPVIRAAPAPPAAAPLDPAEARLLADPILALLRTAG 207
Query: 369 SSVTSASAAKPAAPRVPLS 387
S + +P + L
Sbjct: 208 DDE-SCDSLRPESSVTRLD 225
>gnl|CDD|219552 pfam07750, GcrA, GcrA cell cycle regulator. GcrA is a master cell
cycle regulator that, together with CtrA (see pfam00072
and pfam00486), is involved in controlling cell cycle
progression and asymmetric polar morphogenesis. During
this process, there are temporal and spatial variations
in the concentrations of GcrA and CtrA. The variation in
concentration produces time and space dependent
transcriptional regulation of modular functions that
implement cell-cycle processes. More specifically, GcrA
acts as an activator of components of the replisome and
the segregation machinery.
Length = 162
Score = 29.4 bits (66), Expect = 5.2
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 320 PKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKP 379
A P P AAPA R A AP+P T + +A
Sbjct: 46 SGRAKPMSPTAAPARPKRAGPPAAAPRPS--------AGRTALQLELPAEVALEPAAPVV 97
Query: 380 AAPRVPLSQRTS 391
VP+ +R
Sbjct: 98 ERIVVPMPRRLQ 109
Score = 28.6 bits (64), Expect = 8.5
Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 383 RVPLSQRTSAAKPATKPA-TAKPSTTSKPTTASKPATATR---PATTTSKPATTTSTDIE 438
R+ LS R P PA + + S TA + PA +PA I
Sbjct: 42 RLGLSGRAKPMSPTAAPARPKRAGPPAAAPRPSAGRTALQLELPAEVALEPAAPVVERIV 101
Query: 439 DEMNQPFTPEELEAAIKSGLITTPGRDNIHY 469
M + EL A I P ++ +
Sbjct: 102 VPMPRRLQLLELGEATCRWPIGDPLSEDFAF 132
>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion].
Length = 360
Score = 30.1 bits (68), Expect = 5.2
Identities = 25/144 (17%), Positives = 32/144 (22%), Gaps = 20/144 (13%)
Query: 299 VASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVS 358
V K P P P P P PL PV
Sbjct: 33 VGRIALVGFALIALQGEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLP-VDLGAPVL 91
Query: 359 AT---------------TTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAK 403
+ TS S V S A + + +AA P
Sbjct: 92 PDQQVEEAKDQPRRLRAAELAATSGSRVESDRAVGRVRAALANAAPAAAAPPPAGQ---- 147
Query: 404 PSTTSKPTTASKPATATRPATTTS 427
PS S + T+P +
Sbjct: 148 PSGQSAKEDFAGAVNPTQPFEVAA 171
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.0 bits (63), Expect = 5.2
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 171 VPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKK 222
V + + + E +L A + L AAAA AA A A AA +
Sbjct: 16 KEVEAERLELLVKFLEGKNIKELIANGSAKLSAAAAAAAAAAAAAAAAAAAE 67
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 30.2 bits (67), Expect = 5.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAP 294
A P P PA PA P A + T P P
Sbjct: 106 AAPVPAPAPAPAAAPPAAPAPAADTPAAPIP 136
>gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding. The F-actin binding
domain forms a compact bundle of four antiparallel
alpha-helices, which are arranged in a left-handed
topology. Binding of F-actin to the F-actin binding
domain may result in cytoplasmic retention and
subcellular distribution of the protein, as well as
possible inhibition of protein function.
Length = 179
Score = 29.3 bits (65), Expect = 5.4
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASA 376
P+ PKP + KPV P + +P+P + NG + S S T
Sbjct: 9 PAVPKPQSTAKPVGTPPSPVPLPSTSPSPSKMANGTQPSSAAFIPLISTRVSLRKTRQPP 68
Query: 377 AKPAAPRV 384
+ A+ ++
Sbjct: 69 ERIASGKI 76
Score = 28.9 bits (64), Expect = 8.0
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 378 KPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTT 433
KP P VP Q S AKP P + P ++ P + SK A T+P++ P +T
Sbjct: 5 KPVPPAVPKPQ--STAKPVGTPPSPVPLPSTSP-SPSKMANGTQPSSAAFIPLIST 57
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 30.0 bits (67), Expect = 5.5
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 289 APKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVA-APAPKPRPATAAPAPK 346
A + R+ V + A S+ P KKP++ A A K A+ AP+
Sbjct: 14 ACRLTAARQAVKGPLLPGLQLR-QVASLSSSRSPLELKKPISKASATKTVTQEASRAPR 71
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 30.2 bits (68), Expect = 5.6
Identities = 13/103 (12%), Positives = 34/103 (33%)
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
T + + + +K + + P + A K + + +++ + A
Sbjct: 505 DSGSLSPNTNEINSFSLNTTDSQQKQSPSHNAPTNNSLNEMASKNSNSQTQASNSNENVA 564
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKP 336
V+ + ++ +S A P+ +A + P P
Sbjct: 565 AVKAILDASAQMEKPYDLSQAATPTKATESASVRQAPNPPPHQ 607
>gnl|CDD|234345 TIGR03755, conj_TIGR03755, integrating conjugative element protein,
PFL_4711 family. Members of this protein family are
found in genomic regions associated with conjugative
transfer and integrated TOL-like plasmids. The specific
function is unknown [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 418
Score = 30.0 bits (68), Expect = 5.7
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 370 SVTSASAAKPAAPRVPLSQRTSAAKPATKPAT-------AKPSTTSKPTTASKPATATRP 422
VT S+ ++ L Q + + A A + T T++K P
Sbjct: 198 PVTDTSSVSASSCSGLLCQTWPSPEEAADWAVRVLGEQEIRTCTDDCTKTSTKAGVGLTP 257
Query: 423 ATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPG 463
+ + P T E L A L T G
Sbjct: 258 LIEEEYDSNLEALQKLVSGATPPTQENLAKASSPSLPITRG 298
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 29.0 bits (65), Expect = 5.9
Identities = 12/56 (21%), Positives = 17/56 (30%)
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
+ +T + T T K P PK PK+ PKP+
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
>gnl|CDD|114474 pfam05750, Rubella_Capsid, Rubella capsid protein. Rubella virus
is an enveloped positive-strand RNA virus of the family
Togaviridae. Virions are composed of three structural
proteins: a capsid and two membrane-spanning
glycoproteins, E2 and E1. During virus assembly, the
capsid interacts with genomic RNA to form nucleocapsids.
It has been discovered that capsid phosphorylation
serves to negatively regulate binding of viral genomic
RNA. This may delay the initiation of nucleocapsid
assembly until sufficient amounts of virus glycoproteins
accumulate at the budding site and/or prevent
non-specific binding to cellular RNA when levels of
genomic RNA are low. It follows that at a late stage in
replication, the capsid may undergo dephosphorylation
before nucleocapsid assembly occurs.
Length = 300
Score = 29.8 bits (66), Expect = 5.9
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 15/149 (10%)
Query: 207 AAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKP 266
A A+ + A A ++ +P P P + ++T + + + P ++
Sbjct: 18 AQSRALRAELAAGASQSRRPRP-------PRQRDSSTSGDDSGRDSGGPRRRRGNRGRGQ 70
Query: 267 APKPATKPAPKPTTAAPKSTTTAPKP--APVRKPVASTITKTATSTVSAAPKPSAPKPAA 324
+ P P +S T APKP AP ++P + T +AP+P P
Sbjct: 71 RKDWSRAPPPPEERQESRSQTPAPKPSRAPPQQPQPP---RMQTGRGGSAPRPELGPPTN 127
Query: 325 PKKPVAAPAPKP---RPATAAPAPKPLTN 350
P + A +P P T AP +T+
Sbjct: 128 PFQAAVARGLRPPLHDPDTEAPTEACVTS 156
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 29.7 bits (67), Expect = 5.9
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKP-------AISPVKKTATTTAKPAPKPATKPAP 276
D P P + +T T A P A + ++T + KP P P
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVP 255
Query: 277 KPTTAAPKSTTTAPKP 292
KP +P +AP P
Sbjct: 256 KP-YISPDEYPSAPLP 270
>gnl|CDD|219594 pfam07816, DUF1645, Protein of unknown function (DUF1645). These
sequences are derived from a number of hypothetical
plant proteins. The region in question is approximately
270 amino acids long. Some members of this family are
annotated as yeast pheromone receptor proteins AR781 but
no literature was found to support this.
Length = 191
Score = 29.4 bits (66), Expect = 6.0
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 17/129 (13%)
Query: 312 SAAPKPSAPKPAA----PKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTS 367
+A P+ + A P++ + + P + V+ P S++ +S T
Sbjct: 40 ESAFAPARLRRALRSLSPERGGGSSDSESTDEGELEGVPPSSYCVSSSPASSSRKSSSTG 99
Query: 368 SSS---------VTSASAAKPA----APRVPLSQRTSAAKPATKPATAKPSTTSKPTTAS 414
SS SAS K A A + PL + + + PA+ A + +
Sbjct: 100 SSKRWRLSDLLLFRSASDGKDAFVFDAAKDPLLKYSPLSSPASPVKPASAKSRESSASKG 159
Query: 415 KPATATRPA 423
K T +
Sbjct: 160 KRRGKTVAS 168
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation
region.
Length = 295
Score = 29.7 bits (66), Expect = 6.0
Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 23/185 (12%)
Query: 221 KKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTT 280
KK DK S P + ++ + + + + + +A P P P+ P
Sbjct: 110 KKPDKS-----LFSSPSPQDSSPRLSAFTQHHRPVITGHSGISASPHPTPSPLHFPTSPI 164
Query: 281 AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK-------------K 327
+ ++ P A +R P V PS+ + P
Sbjct: 165 LPQQPSSYFPHTA-IRYPPHLHPQDPLKEFVQLVCDPSSQQAGQPNGSGQGKVPNHFLPT 223
Query: 328 PVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLS 387
P+ AP P P A P PL TK P ++T + + +S S + PA V L
Sbjct: 224 PMLAPPPPPPMA----RPVPLPMPDTKPPTTSTEGGATSPTSPTYSTPSTSPANRFVGLG 279
Query: 388 QRTSA 392
R A
Sbjct: 280 PRDPA 284
>gnl|CDD|114524 pfam05802, EspB, Enterobacterial EspB protein. EspB is a
type-III-secreted pore-forming protein of
enteropathogenic Escherichia coli (EPEC) which is
essential for EPEC pathogenesis. EspB is also found in
Citrobacter rodentium.
Length = 317
Score = 29.7 bits (66), Expect = 6.1
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 179 QTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKAT-AAKKTDKPGPAAKPASKPL 237
++ A E ++ AA V GA+ G+ A+ AT A + +A +
Sbjct: 84 ESQNKAIEEKKAAATAALVGGAISSVLGILGSFAAINSATKGASDIAQKATSASSKAVNA 143
Query: 238 AKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRK 297
A TK A +++ + A++T + A ATK A + + A T+A K + V +
Sbjct: 144 ASEVATKALVKATESVADAAEEASSTMQQAMATATKAASRTSGVADDVATSAQKASQVAE 203
Query: 298 PVASTITKTA 307
A K +
Sbjct: 204 EAADAAQKAS 213
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 30.1 bits (68), Expect = 6.2
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 292 PAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATA------APAP 345
V + + T S+ S P A +PA PVAAP PA A P
Sbjct: 240 QDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATPAAAQIELSAGVLP 299
Query: 346 KPLTNGVTKRPVSATTTASRTSSSS 370
++ RP S T S+ S+
Sbjct: 300 NAISPATPVRPASNGVTPSQAPSAE 324
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 30.0 bits (66), Expect = 6.2
Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 17/230 (7%)
Query: 4 ASDNHVENSVSNVDKPVSNLFEISTEETSYNEKPQEHDDLTFETKESSFQE--ETHTETK 61
A D+ V + S V + E S EE + K ++ + E S E E ET+
Sbjct: 226 AVDDDVAHHESEVGDKPA---ETSKEEETPEVKAEDLQPAVDGSVEHSSSEIEEHQGETE 282
Query: 62 VESSFQETHVA-LETNLDDFTSQETKLDDFISAHTEKTPEVSEPKEEVLDDLVSVPTSVP 120
E E+H L+ +DD + +T + E + +DL
Sbjct: 283 KEEGIPESHAEDLQPAVDDIVEHPSSEPFVAEEEVSETEKEENNPEVLAEDL-------Q 335
Query: 121 DVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQT 180
D + + P+ V+ + +EE + + AE + S+ + A+
Sbjct: 336 DAADGESGVSDQPAQVVEERESEIEEHQGETEKEEGIPESHAEDDEIASDPSIEHFSAEV 395
Query: 181 V----ESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKP 226
E+ +E + A + A+ A + V K A +K+ + P
Sbjct: 396 GKEVSETEKEESNPEVKAEDLQPAVDGDVAHHESEVGDKPAETSKEEESP 445
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 29.6 bits (66), Expect = 6.2
Identities = 18/81 (22%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK-PSAPKPA 323
K + PA A S PA + + V+ P P A
Sbjct: 258 KSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQVAPVA 317
Query: 324 APKKPVAAPAPKPRPATAAPA 344
AP P P AAP
Sbjct: 318 APAAPEVPAVPV---VPAAPQ 335
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 30.2 bits (68), Expect = 6.6
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 214 VKKATAAKKT--DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPA 271
+ K KT +K A K ++ K T + + KK A P+P A
Sbjct: 736 ITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSPALA 795
Query: 272 TKPAPKPTT 280
+P
Sbjct: 796 AMIGAEPVG 804
>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus.
This family represents the C-terminal region of
merozoite surface protein 1 (MSP1) which are found in a
number of Plasmodium species. MSP-1 is a 200-kDa protein
expressed on the surface of the P. vivax merozoite.
MSP-1 of Plasmodium species is synthesised as a
high-molecular-weight precursor and then processed into
several fragments. At the time of red cell invasion by
the merozoite, only the 19-kDa C-terminal fragment
(MSP-119), which contains two epidermal growth
factor-like domains, remains on the surface. Antibodies
against MSP-119 inhibit merozoite entry into red cells,
and immunisation with MSP-119 protects monkeys from
challenging infections. Hence, MSP-119 is considered a
promising vaccine candidate.
Length = 574
Score = 29.9 bits (67), Expect = 6.7
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
PK T+ A T P P+P+ A + + ST
Sbjct: 259 PKGTTQEAKVTTVVTPPQAD--AAPSPLSVRPAGSSGSASGSTQIPTS 304
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 29.9 bits (67), Expect = 6.8
Identities = 63/363 (17%), Positives = 97/363 (26%), Gaps = 53/363 (14%)
Query: 86 KLDDFISAHTEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDA---NEESPSPAVDLTQD 142
D ++ P E S S P N P +
Sbjct: 315 LASDEVAKEPAGESPAVSPSFEREKSEKSRHESDPKSRENSKPASIYGSVPDLIRHTPLE 374
Query: 143 IVEE---------KEAVVTPTDETNSETAEKE--------------------TPLSEVPV 173
VEE E V P E +S E+E +S
Sbjct: 375 DVEEYEPLFPEDESEIAVKPPTEESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVSTPSN 434
Query: 174 IPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPA 233
P A E S +SS+++ + + K+ ++ + P ++
Sbjct: 435 PPPRASETPEQETSRSSSEVSLDPHQSELKSEKKKARPEVSKQRFPSRDVWEDAPESQ-- 492
Query: 234 SKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
+ TT+ T + SP ++P T KP K PKP
Sbjct: 493 -----ELVTTEETPEEVKSSSPGVTKPAIPSRPKKGKPTSEKRKPPPVPKK-----PKPQ 542
Query: 294 PVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVT 353
+P + S+A KP PA P A A A L +
Sbjct: 543 IPARPAKLQKQQAGEEANSSAFKPKPRVPARPGGSKIA-------ALKAGFASDLNGRLA 595
Query: 354 KRPVSATTTASRTSSSSVTSASAAKPAAPRVPLS--QRTSAAKPATKPATAKPSTTSKPT 411
P + S + + PLS ++ A PA + +T P
Sbjct: 596 LGPQAPKKVLESPKEPSKEKKEEDEDTKEKAPLSDARKGRARGPARRKPATVAATEKLPE 655
Query: 412 TAS 414
S
Sbjct: 656 IPS 658
Score = 29.5 bits (66), Expect = 8.8
Identities = 42/286 (14%), Positives = 84/286 (29%), Gaps = 15/286 (5%)
Query: 145 EEKEAVVTPTDETNSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVG 204
E TP ++ E+ T P + + S E + + + V
Sbjct: 262 TSPEVDGTPEEQVGYTAPEEYTSRLSSPAPDSSSFSSPSGESGLEEREAEEPILASDEVA 321
Query: 205 AAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTA 264
AG + AV + +K++K + P S+ +K + + +P++
Sbjct: 322 KEPAGESPAVSPSFEREKSEKSRHESDPKSRENSKPASIYGSVPDLIRHTPLEDVEEYEP 381
Query: 265 KPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTA-TSTVSAAPKPSAPKPA 323
+ PT + + P + + T+TVS PS P P
Sbjct: 382 LFPEDESEIAVKPPTEESSRRPEEEKHRFPSEDVWEDSPSSLQDTATVST---PSNPPPR 438
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPR 383
A + P + ++ + P + + A ++
Sbjct: 439 ASETPEQETSRS----SSEVSLDPHQSELKSEKKKA-------RPEVSKQRFPSRDVWED 487
Query: 384 VPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKP 429
P SQ + + + +KP S+P + P
Sbjct: 488 APESQELVTTEETPEEVKSSSPGVTKPAIPSRPKKGKPTSEKRKPP 533
>gnl|CDD|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like
membrane domain.
Length = 116
Score = 28.4 bits (64), Expect = 6.8
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGAL---VVGAAAAGAAVA 213
Q + A S A AGA G GAA+
Sbjct: 38 QVGGKAQEAARSAAGGAAVGAAAGAAAGAAAGGGGDGAAIG 78
>gnl|CDD|215299 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 29.9 bits (67), Expect = 6.9
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 7/105 (6%)
Query: 278 PTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPR 337
P S+ + +R + +++ + K S P + +PK
Sbjct: 8 PHLHHSYSSLDRREKTCLRSSQKTRRFPKPKASLHPSIKRSRPGRCSTNGAAVPESPK-- 65
Query: 338 PATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAP 382
P+ + T P A TT RT +
Sbjct: 66 -----PSRRGRKKKPTSSPPKAKTTRRRTKKTDQELDPEGAEEDQ 105
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 28.5 bits (64), Expect = 7.0
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 263 TAKPAPKPATKPAPKPTTAAPKSTTTAPKPA 293
A AP PA PA P AA + P A
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPAA 43
>gnl|CDD|223716 COG0643, CheA, Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal
transduction mechanisms].
Length = 716
Score = 30.0 bits (68), Expect = 7.0
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 7/121 (5%)
Query: 25 EISTEETSYNEKPQE-HDDLTFETKESSFQEETHTETKVESSFQ-----ETHVALETNLD 78
E+ E + ++ + FE E E E + + E LD
Sbjct: 213 ELGEEIAATLPDLEDLEAEAAFEESEVVLATE-QDEELIRDVLELVVEAEELEIAAVELD 271
Query: 79 DFTSQETKLDDFISAHTEKTPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVD 138
+ + + E K +S + P A S S VD
Sbjct: 272 AELLELAESEQAADDVLAAQAEPLAEKSAAEAAKLSALEAAPAAKAAAAAAGASSSIRVD 331
Query: 139 L 139
+
Sbjct: 332 V 332
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 30.0 bits (68), Expect = 7.0
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 202 VVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASKPLAKT--TTTKTTTAAKPAISPVKKT 259
VV + A VA + A A +D+P A A PL +T I +T
Sbjct: 213 VVKPSKFDAKVAERAAELAAASDRPADAKGVALTPLERTIDADGLRYRHVDVEIDRAART 272
Query: 260 ATTTAKPAPKPATKPAPKPTTAA 282
AT T K AP A +P A
Sbjct: 273 ATITVK-APT-----AAQPADIA 289
>gnl|CDD|182338 PRK10255, PRK10255, PTS system N-acetyl glucosamine specific
transporter subunits IIABC; Provisional.
Length = 648
Score = 29.8 bits (67), Expect = 7.0
Identities = 29/128 (22%), Positives = 41/128 (32%), Gaps = 24/128 (18%)
Query: 183 SAEESTASSDLAAKVAGA------------LVVGAAAAGAAVAVKK-----ATAAKKTDK 225
+ +S +D K GA ++VGA A A+KK AA +
Sbjct: 419 TVADSARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGPVAAASAEA 478
Query: 226 PGPAAKPASKPLAKTTTTKTTTAAKP------AISPVKKTATTTAKPAPKPATKPAPKPT 279
A P +KP A P A+ V A + A KP K
Sbjct: 479 TPATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDK-I 537
Query: 280 TAAPKSTT 287
+P + T
Sbjct: 538 VVSPAAGT 545
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 30.0 bits (67), Expect = 7.1
Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 1/174 (0%)
Query: 264 AKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPA 323
+P ++ T K + T + ++++ V P P
Sbjct: 142 TQPGVSTSSGSTTSGTDLNTKQSQTGLGASGSHAQQDPAVSQSGVVGVPGLGVPGVGVPG 201
Query: 324 APKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASR-TSSSSVTSASAAKPAAP 382
R + GV + A+ T+ + + P
Sbjct: 202 GGGAGALPGVGVGRAGVSPGVGVGGLGGVPGVGILASNTSREGQTQDDQERDGDGRVIEP 261
Query: 383 RVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRPATTTSKPATTTSTD 436
V L ++ T +T+ T AS +A ++S+ A T STD
Sbjct: 262 GVGLPGVRVGDSTSSPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNAVTRSTD 315
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 29.5 bits (66), Expect = 7.2
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 11/159 (6%)
Query: 38 QEHDDLTFETKESSFQEETHTETKVESSFQETHVALETNLDDFTSQETKLDDFISAHTEK 97
Q+ ++L E +EE + E QE ET ++ + E K++ E
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQE-----ETAGEEERTDEPKVEHEAHEQHE- 190
Query: 98 TPEVSEPKEEVLDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDET 157
+ ++ + S P + V EE+ D T+ VE++E + E
Sbjct: 191 --QPADDDPDEWKISASEPFQLESEV-EASPEEENYEEYEDETELEVEDEEKALDEQTED 247
Query: 158 NSETAEKETPLSEVPVIPQEAQTVESAEESTASSDLAAK 196
+ E + +E + E E +T + L K
Sbjct: 248 PQQ--EDALAGDAKKALEEEEEKGERPENATYLTKLFRK 284
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 29.3 bits (66), Expect = 7.3
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 229 AAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAP 276
A + A K K T A + K A K A K A
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTA--KKAAAKKAAKTKKAAKKAA 298
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 29.3 bits (66), Expect = 7.4
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 237 LAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVR 296
L+ TT T+ VK ++T AP T TT + T ++
Sbjct: 12 LSDTTLFPNATS-----KGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNVTVTLHDVTLQ 66
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAP 345
+++ T + T T A PS VA P+P P P ++PA
Sbjct: 67 AYLSNG-TFSKTETRCEADTPSPT-------TVATPSPSPTPVPSSPAV 107
>gnl|CDD|188547 TIGR04032, toxin_SdpC, antimicrobial peptide, SdpC family. This
protein family contains the antimicrobial peptide SdpC,
used in cannibalistic killing by Bacillus subtilis, and
related sequences in species as distant as Myxococcus
xanthus from the Deltaproteobacteria. A conserved gene
neighborhood includes proteins associated with immunity.
Length = 172
Score = 28.9 bits (65), Expect = 7.5
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 168 LSEVPVIPQEA-----QTVESAEESTASSDLAAKVAGA----LVVGAAAAGAAVAVKKAT 218
L++ + QEA + ++ A VA A +VV AA A A VA+ A
Sbjct: 83 LTKGGELLQEAAAESTAALSKDGTVPGDANAVAVVAVAAGLYVVVVAAVAVATVALAAAA 142
Query: 219 AAKKTDKPGPAAKP 232
D P
Sbjct: 143 VNPAVDSWPVTENP 156
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 29.7 bits (67), Expect = 7.5
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 277 KPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSA-APKPSAPKPAAPKKPVAAPAPK 335
+ +P + T + P PS A +P AP+
Sbjct: 85 PSVGPDSDLSQKTSTFSPCQSG---YEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPE 141
Query: 336 PRPATAAPAPKPLTN 350
+P PA K L+
Sbjct: 142 SQPQPQTPAQKMLSL 156
Score = 29.4 bits (66), Expect = 9.2
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 4/127 (3%)
Query: 224 DKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPAT---KPAPKPTT 280
+ A A + ++ T+ P S + + P +P APKP
Sbjct: 75 VRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEP 134
Query: 281 AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPAT 340
P++ + P+P + + S A P P+P P P +
Sbjct: 135 QPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQA-PQLPQPPQQVLPQGMPPRQAAFPQ 193
Query: 341 AAPAPKP 347
P +P
Sbjct: 194 QGPPEQP 200
>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional.
Length = 226
Score = 29.1 bits (65), Expect = 7.8
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 317 PSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSS 369
P +P + A+P PK A P P + T RP S
Sbjct: 174 PRTRRPLSAPDDEASPQPKS---LATPPPVAAPSRRTPRPRRKPRGNRTRPSR 223
Score = 29.1 bits (65), Expect = 9.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 311 VSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP 356
+SA ++P+P K +A P P P+ P P+ G RP
Sbjct: 180 LSAPDDEASPQP----KSLATPPPVAAPSRRTPRPRRKPRGNRTRP 221
>gnl|CDD|236505 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 1163
Score = 29.8 bits (67), Expect = 7.8
Identities = 33/180 (18%), Positives = 53/180 (29%), Gaps = 35/180 (19%)
Query: 24 FEISTEETSYNEKPQEHDDLTFETKESSFQ---EETHTETKVESSFQETHVALETNLD-- 78
++T ET+Y P +L F+ + + +E + KV++ TH+ +
Sbjct: 798 IGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTG 857
Query: 79 -----DFTSQETKLDDFISAHTEKTPE-VSEPKEEVL-----------------DDLVSV 115
+ + +D ISAHT + V V +V V
Sbjct: 858 EITGLELAKKVKGVDAIISAHTHTLVDKVVNGTPVVQAYKYGRALGRVDVKFDKKGVVVV 917
Query: 116 PTSVPDVVPNQDANEESPS------PAVDLTQDIVEEKEAVV-TPTDETNSETAEKETPL 168
TS D+ D E P I EK D + L
Sbjct: 918 KTSRIDLSKIDDDLPEDPEMKEILDKYEKELAPIKNEKVGYTSVDLDGQPEHVRTGVSNL 977
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 29.5 bits (66), Expect = 8.0
Identities = 19/71 (26%), Positives = 25/71 (35%)
Query: 220 AKKTDKPGPAAKPASKPLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPT 279
A K D G P S PLA +T P SP ++ + P PA P
Sbjct: 311 APKGDGRGLHDPPLSPPLAAPESTAEWVVESPVSSPASPLESSPSLPGSLTDLSPASLPA 370
Query: 280 TAAPKSTTTAP 290
+ S+T
Sbjct: 371 VHSLPSSTPGL 381
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 29.8 bits (67), Expect = 8.1
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 297 KPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRP 356
+P+ IT ++ A P P A + + P+ P P +P P G+ ++
Sbjct: 80 RPIRIAITVDPSAGEPAPPPPHARRTSEPELP--RPGRRPYEGYGGPRADDRPPGLPRQD 137
Query: 357 VSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKP 416
T A+PA P +P P A + P
Sbjct: 138 QLPT----------------ARPAYP-----AYQQRPEPGAWPRAADDYGWQQQRLGFPP 176
Query: 417 ATATRPATTTSKPA 430
+ +
Sbjct: 177 RAPYASPASYAPEQ 190
Score = 29.4 bits (66), Expect = 9.6
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 259 TATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPS 318
T +A P + T+ P P R+P A P
Sbjct: 87 TVDPSAGEPA---------PPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLP--- 134
Query: 319 APKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSS 370
+ P A PA + RP A G ++ + A S +S
Sbjct: 135 -RQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPAS 185
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 29.5 bits (66), Expect = 8.1
Identities = 27/149 (18%), Positives = 38/149 (25%), Gaps = 24/149 (16%)
Query: 310 TVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPK----------------------P 347
+S+ P AP P P P P+ RP + +
Sbjct: 424 LLSSRQPPGAPAPRRDNDP--PPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRR 481
Query: 348 LTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTT 407
L G P A + T + + P R + R PA P
Sbjct: 482 LPAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPY 541
Query: 408 SKPTTASKPATATRPATTTSKPATTTSTD 436
+P A TS P + D
Sbjct: 542 LEPDDDRFDRRDGAAAAATSHPREAPAPD 570
>gnl|CDD|129913 TIGR00833, actII, Transport protein. The
Resistance-Nodulation-Cell Division (RND) Superfamily-
MmpL sub family (TC 2.A.6.5)Characterized members of the
RND superfamily all probably catalyze substrate efflux
via an H+ antiport mechanism. These proteins are found
ubiquitously in bacteria, archaea and eukaryotes. This
sub-family includes the S. coelicolor ActII3 protein,
which may play a role in drug resistance, and the M.
tuberculosis MmpL7 protein, which catalyzes export of an
outer membrane lipid, phthiocerol dimycocerosate
[Transport and binding proteins, Unknown substrate].
Length = 910
Score = 29.6 bits (66), Expect = 8.2
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 109 LDDLVSVPTSVPDVVPNQDANEESPSPAVDLTQDIVEEKEAVVTPTDETNSETAEKETPL 168
DD +PT + V + A+ P ++D +++ V P + + E+E +
Sbjct: 386 YDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPALLADIDRFERE--I 443
Query: 169 SEVPVI 174
VP I
Sbjct: 444 KAVPGI 449
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 29.5 bits (66), Expect = 8.5
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 407 TSKPTTASKPATATRPATTTSKPATTTSTDIEDEMNQPFTPEELEAAIKSGLITTPG 463
TT+ P T T P TT + T T+ T E E +TPG
Sbjct: 713 RPDTTTSEDPTTTTTPTTTGPEETTETAEP------TTTTEEPTEETTTGS--STPG 761
>gnl|CDD|215091 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase.
Length = 390
Score = 29.3 bits (66), Expect = 8.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 263 TAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPK 316
A+P+P PA + P+ +T + S+ A + +KP A T S P+
Sbjct: 7 AAQPSPPPAARLRPRRSTRSSSSSVVAARVEAAKKPFAPPREVHVQVTHSMPPE 60
>gnl|CDD|114299 pfam05568, ASFV_J13L, African swine fever virus J13L protein. This
family consists of several African swine fever virus
J13L proteins.
Length = 189
Score = 28.7 bits (63), Expect = 8.6
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 369 SSVTSASAAKPAAPRVPLSQRTSAAKPAT-KPATAKPS-TTSKPTTASKPATATRPATTT 426
+ ++ASA KP R P + R A KPAT KP P AS PA+A
Sbjct: 92 AGASTASAGKPVMDR-PATNRLVADKPATNKPVMDNLGMAAGGPAAASAPASAAASDPAH 150
Query: 427 SKPATTTST 435
TT+T
Sbjct: 151 PAELYTTAT 159
>gnl|CDD|220096 pfam09052, SipA, Salmonella invasion protein A. Salmonella
invasion protein A is an actin-binding protein that
contributes to host cytoskeletal rearrangements by
stimulating actin polymerisation and counteracting
F-actin destabilising proteins. Members of this family
possess an all-helical fold consisting of eight
alpha-helices arranged so that six long, amphipathic
helices form a compact fold that surrounds a final,
predominantly hydrophobic helix in the middle of the
molecule.
Length = 674
Score = 29.6 bits (66), Expect = 8.7
Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 14/174 (8%)
Query: 155 DETNSETAEK--ETPLSEVPVIPQEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAV 212
D + E +E ++P S+ + + ++ S S A+ A V+ + +G V
Sbjct: 334 DNSYHENSENDAQSPTSQTNDLSRNGNSLLSPPASPAAGQHALVQKVTSVLPHSISGT-V 392
Query: 213 AVKKATAAKKTDKPGPAAKPASKPLAKTTTTKTTTA-----AKPAIS----PVKKTATTT 263
+A+K P + LA + TT+ A ++S P+ ++
Sbjct: 393 DTFANNSAEKVFNHTPDNSDGAVRLAGIGSDGLTTSSQERSANNSLSRGGRPLNIQNSSV 452
Query: 264 AKPAPKPATKPAPKP--TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAP 315
P T ++ S+ T A + VA I K ++T S
Sbjct: 453 TDPLHPVLTAADGAEGVKSSTDNSSDTTKSGASLSHRVAGQINKFNSNTDSKGL 506
>gnl|CDD|147982 pfam06112, Herpes_capsid, Gammaherpesvirus capsid protein. This
family consists of several Gammaherpesvirus capsid
proteins. The exact function of this family is unknown.
Length = 148
Score = 28.3 bits (63), Expect = 9.0
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 363 ASRTSSSSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPTTASKPATATRP 422
+TSSS ++ SA+ +A VP + S +S +S P + +
Sbjct: 81 GPQTSSSIGSALSASSSSASGVP-------------GGANQLSGSSGSALSSGPGSLSSS 127
Query: 423 ATTTSKPATTTST 435
++ + A T
Sbjct: 128 SSLSGSGAGAGDT 140
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 29.5 bits (66), Expect = 9.0
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 303 ITKTATSTVSAAPKPSAPKPAAPK---KPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSA 359
I A +S+ + + P+ KP A P KP P + K+P +
Sbjct: 40 IMALAGKDISSLTSDTPEEATIPETTVKPTAPPRQKPASGQPQPPA------IHKQP-AT 92
Query: 360 TTTASRTSSSSVTS 373
A+ S+++
Sbjct: 93 QPPAADIPSANIMQ 106
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 29.3 bits (66), Expect = 9.0
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 11 NSVSNVDKPVSNLFEI-STEETSYNEKPQEHDDLTFETKESSFQEE 55
NS +N+ S L I T K H DL +T +S +
Sbjct: 210 NSDNNIKNIGSKLSFISRVPATIAEAKELLHADLYLKTLKSDERGS 255
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.4 bits (66), Expect = 9.5
Identities = 50/160 (31%), Positives = 60/160 (37%), Gaps = 17/160 (10%)
Query: 176 QEAQTVESAEESTASSDLAAKVAGALVVGAAAAGAAVAVKKATAAKKTDKPGPAAKPASK 235
+ + AEE+ + L K A AAA AA A KA A K AA A K
Sbjct: 112 AAQEQKKQAEEAAKQAALKQKQAEE----AAAKAAAAAKAKAEAEAKR-----AAAAAKK 162
Query: 236 PLAKTTTTKTTTAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPV 295
A+ AAK A + KK A A A A K A K K A
Sbjct: 163 AAAEAKKKAEAEAAKKAAAEAKKKAEAEAA---AKAAAEAKKKAEAEAKK-----KAAAE 214
Query: 296 RKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAPK 335
K A+ K A + +A K +A K AA K A A K
Sbjct: 215 AKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAK 254
>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.
Length = 250
Score = 29.1 bits (65), Expect = 9.6
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 4/82 (4%)
Query: 281 AAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPA----PKP 336
A ST KP P + S K+ S VS + + +KP
Sbjct: 8 RASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGE 67
Query: 337 RPATAAPAPKPLTNGVTKRPVS 358
A P P V
Sbjct: 68 AAAGKDPGPAAAAKTSLAVSVG 89
Score = 29.1 bits (65), Expect = 9.7
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 330 AAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSSSSVTSASAAKPAAPRVPLSQR 389
A + + P + + K S + ++ S P L
Sbjct: 8 RASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGE 67
Query: 390 TSAAK---PATKPATAKPSTTSK 409
+A K PA T+ + K
Sbjct: 68 AAAGKDPGPAAAAKTSLAVSVGK 90
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 29.3 bits (65), Expect = 9.7
Identities = 13/81 (16%), Positives = 23/81 (28%)
Query: 247 TAAKPAISPVKKTATTTAKPAPKPATKPAPKPTTAAPKSTTTAPKPAPVRKPVASTITKT 306
+ + T + + P + ++T P ++ P +T
Sbjct: 163 AEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSK 222
Query: 307 ATSTVSAAPKPSAPKPAAPKK 327
APKP A KK
Sbjct: 223 PQQAAPVTRAADAPKPTAEKK 243
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 28.9 bits (65), Expect = 9.7
Identities = 14/56 (25%), Positives = 18/56 (32%)
Query: 279 TTAAPKSTTTAPKPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPKKPVAAPAP 334
P TTA +P PV S + SA P P+ +PA
Sbjct: 50 GELVPLPGTTATQPPPVVLTPWSDPRLPDPPHLPDPQTHSATAHRNPHPPLNSPAR 105
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 29.1 bits (65), Expect = 9.7
Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 18/97 (18%)
Query: 268 PKPATKPAPKPTTAAPKSTTTAP-KPAPVRKPVASTITKTATSTVSAAPKPSAPKPAAPK 326
K +PAP T A T T P PAP+ P A +P AP
Sbjct: 53 SKKENEPAPPSTMIA---TNTKPFHPAPIDVP------------PDPPAAQEAVQPTAPP 97
Query: 327 KPVAAPAP-KPRPA-TAAPAPKPLTNGVTKRPVSATT 361
+ P +PRP T A G +KR T
Sbjct: 98 SAQSEPERNEPRPEETPIFAYSSGDQGGSKRAGHGDT 134
>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
are single stranded RNA viruses. This family includes a
protein of unknown function that has been named based on
its molecular weight. Tymoviruses such as the ononis
yellow mosaic tymovirus encode only three proteins. Of
these two are overlapping this protein overlaps a larger
ORF that is thought to be the polymerase.
Length = 458
Score = 29.3 bits (66), Expect = 9.8
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 309 STVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKPLTNGVTKRPVSATTTASRTSS 368
+ P P PK A P+ A AP R + + P P P + + + AS +
Sbjct: 365 RRLRLLPVPP-PKVQAL--PLTALAPLVRHSPSIPLPHPPS------ALPSHVGASSSKH 415
Query: 369 SSVTSASAAKPAAPRVPLSQRTSAAKPATKPATAKPSTTSKPT 411
+ + P S +P T P A P T S P+
Sbjct: 416 HRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458
>gnl|CDD|237545 PRK13888, PRK13888, conjugal transfer protein TrbN; Provisional.
Length = 206
Score = 28.6 bits (64), Expect = 9.9
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 310 TVSAAPKPSAPKPAAPKKPVAAPAPKPRPATAAPAPKP 347
A PS P A A PA +P PA AP
Sbjct: 147 VTKAGATPSTPSQPATVAQRATPAARPAPAPKQAAPAA 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.121 0.337
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,250,823
Number of extensions: 3561599
Number of successful extensions: 15772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8901
Number of HSP's successfully gapped: 1569
Length of query: 821
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 716
Effective length of database: 6,280,432
Effective search space: 4496789312
Effective search space used: 4496789312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.4 bits)