BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1675
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
 pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
          Length = 555

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD ++E
Sbjct: 156 GIPVGKLALYTACGGVKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDE 215

Query: 102 FMQAVVARYGQHVLIQ 117
           F +AV +RYG + LIQ
Sbjct: 216 FXEAVTSRYGXNCLIQ 231



 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + ++  V+E +L  G LYPP   I+  SLKIA ++ ++A+++ TA+
Sbjct: 471 EVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAS 516


>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
 pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
 pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
          Length = 575

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 62/77 (80%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL+LYTA  G+ P +CLP+ LDVGT  ++LL DPLYIGLRQRR  G  YDDF++
Sbjct: 178 MGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLD 237

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+AV ++YG + LIQ
Sbjct: 238 EFMEAVSSKYGMNCLIQ 254



 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + ++  V++  L+ G LYPP N I+D SLKIA K+V+ A+++ TAT
Sbjct: 494 EVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTAT 539


>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
          Length = 554

 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           MGIPVGKL LYTA AGI+P QCLP+ +DVGT+   LL DP Y+GL Q+R   Q YDD I+
Sbjct: 158 MGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLID 217

Query: 101 EFMQAVVARYGQHVLIQ 117
           EFM+A+  RYG++ LIQ
Sbjct: 218 EFMKAITDRYGRNTLIQ 234


>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
           With Nadh
 pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
           With Nadh
          Length = 605

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 56/77 (72%)

Query: 41  MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
           +GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP YIGLR +R  G+ YD  ++
Sbjct: 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLD 252

Query: 101 EFMQAVVARYGQHVLIQ 117
            FM+A   +YGQ  LIQ
Sbjct: 253 NFMKACTKKYGQKTLIQ 269



 Score = 33.5 bits (75), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
           + ++  VTE  L  G +YP    I++ S++IA ++ +  +K+GTA 
Sbjct: 508 KKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTAN 553


>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
           Nad(P)+-Dependent Malic Enzyme
 pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Atp, Mn++, And Allosteric Activator Fumarate.
 pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Malate, Cofactor Nadh, Mn++, And Allosteric Activator
           Fumarate
 pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate.
 pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate.
 pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate.
 pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
           Malic Enzyme In A Pentary Complex With Natural Substrate
           Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
           Fumarate
          Length = 564

 Score =  100 bits (250), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 56/76 (73%)

Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 158 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 217

Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 218 FXKAITDRYGRNTLIQ 233


>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
 pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
          Length = 584

 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)

Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 178 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237

Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 238 FXKAITDRYGRNTLIQ 253


>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
           Ketomalonate
 pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
           And Tartronate
 pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
 pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
           With Nad And Lu3+
          Length = 584

 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)

Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 178 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237

Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 238 FXKAITDRYGRNTLIQ 253


>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
 pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
           Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
           Fumarate
          Length = 551

 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)

Query: 42  GIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEE 101
           GIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y GL Q+R   Q YDD I+E
Sbjct: 156 GIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 215

Query: 102 FMQAVVARYGQHVLIQ 117
           F +A+  RYG++ LIQ
Sbjct: 216 FXKAITDRYGRNTLIQ 231


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,088,065
Number of Sequences: 62578
Number of extensions: 199294
Number of successful extensions: 369
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 26
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)