Query psy1675
Match_columns 179
No_of_seqs 200 out of 921
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257|consensus 100.0 4.1E-41 8.9E-46 307.7 5.6 153 8-160 147-338 (582)
2 PTZ00317 NADP-dependent malic 100.0 1.9E-36 4E-41 280.6 5.9 112 9-121 136-250 (559)
3 PLN03129 NADP-dependent malic 100.0 2.7E-36 5.9E-41 280.5 4.5 130 12-142 162-299 (581)
4 PRK13529 malate dehydrogenase; 100.0 7.7E-36 1.7E-40 276.7 6.5 149 11-160 136-323 (563)
5 PF00390 malic: Malic enzyme, 100.0 2.7E-36 5.8E-41 246.4 1.8 115 11-125 56-173 (182)
6 KOG1257|consensus 100.0 2.1E-31 4.4E-36 244.1 -0.5 170 1-170 183-552 (582)
7 PLN03129 NADP-dependent malic 99.9 2.7E-25 5.8E-30 207.2 1.3 139 1-160 194-350 (581)
8 PTZ00317 NADP-dependent malic 99.8 6.9E-22 1.5E-26 183.8 0.6 118 50-167 373-541 (559)
9 PRK13529 malate dehydrogenase; 99.8 1.9E-21 4E-26 181.1 -0.1 117 51-168 375-542 (563)
10 PF00390 malic: Malic enzyme, 99.7 1.8E-20 3.9E-25 153.4 -5.7 91 1-111 89-182 (182)
11 COG0281 SfcA Malic enzyme [Ene 99.4 2.1E-14 4.6E-19 130.0 -1.7 127 23-157 78-224 (432)
12 PRK12861 malic enzyme; Reviewe 99.2 2.2E-12 4.8E-17 124.5 -2.2 123 24-153 69-210 (764)
13 PRK12862 malic enzyme; Reviewe 99.1 3.2E-12 6.9E-17 123.7 -2.6 120 23-153 72-214 (763)
14 PRK07232 bifunctional malic en 99.0 1.7E-11 3.7E-16 118.4 -3.4 120 23-153 64-206 (752)
15 cd05312 NAD_bind_1_malic_enz N 98.1 2.8E-07 6.2E-12 80.3 -2.5 120 48-167 95-265 (279)
16 PF03949 Malic_M: Malic enzyme 97.9 3.3E-07 7.1E-12 79.0 -5.7 109 48-156 96-255 (255)
17 PRK12861 malic enzyme; Reviewe 97.3 6.8E-05 1.5E-09 73.3 1.2 93 55-171 82-209 (764)
18 cd00762 NAD_bind_malic_enz NAD 97.0 3.6E-05 7.7E-10 66.4 -3.9 107 49-155 97-254 (254)
19 COG0281 SfcA Malic enzyme [Ene 96.7 0.00077 1.7E-08 61.9 1.8 33 130-163 375-407 (432)
20 PRK07232 bifunctional malic en 95.0 0.0086 1.9E-07 58.8 0.8 71 99-171 114-205 (752)
21 PRK12862 malic enzyme; Reviewe 94.9 0.0077 1.7E-07 59.2 0.4 70 100-171 123-213 (763)
22 cd05311 NAD_bind_2_malic_enz N 91.4 0.14 3E-06 43.1 2.3 34 121-155 193-226 (226)
23 PF09505 Dimeth_Pyl: Dimethyla 26.1 35 0.00076 31.3 1.2 36 14-49 60-97 (466)
24 PF14579 HHH_6: Helix-hairpin- 21.8 55 0.0012 23.3 1.4 26 130-155 22-47 (90)
No 1
>KOG1257|consensus
Probab=100.00 E-value=4.1e-41 Score=307.65 Aligned_cols=153 Identities=44% Similarity=0.737 Sum_probs=127.2
Q ss_pred hhhhhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccc
Q psy1675 8 LSLYTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIG 84 (179)
Q Consensus 8 l~l~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig 84 (179)
-+++.....|+-+++--|++..|.++.+ ||++|||||+|||+||||||||+|++||||+|||||||++||+||+|+|
T Consensus 147 Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiG 226 (582)
T KOG1257|consen 147 GHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIG 226 (582)
T ss_pred chHHHHHHhCCccceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccc
Confidence 4556666777444456677778888887 7889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccc-
Q psy1675 85 LRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIK- 141 (179)
Q Consensus 85 ~r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir- 141 (179)
+|++|.+|++|++|+||||+|+.++|||+++||||| |+|+|+++..+.++.+++..+
T Consensus 227 Lr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~ 306 (582)
T KOG1257|consen 227 LRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGK 306 (582)
T ss_pred cccccccccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999988887 556666655555444333321
Q ss_pred -------------hhhHHHHHHHHHHHHHhCc
Q psy1675 142 -------------DCSLKIAAKLVEQAFKDGT 160 (179)
Q Consensus 142 -------------~~sl~IA~~v~~~ay~~gl 160 (179)
+|+++||..++.++.++|+
T Consensus 307 ~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl 338 (582)
T KOG1257|consen 307 PLSDHVILFLGAGEAALGIANLIVMAMVKEGL 338 (582)
T ss_pred ccccceEEEecCchHHhhHHHHHHHHHHHcCC
Confidence 2777888888888877777
No 2
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.9e-36 Score=280.61 Aligned_cols=112 Identities=38% Similarity=0.679 Sum_probs=99.6
Q ss_pred hhhhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccc
Q psy1675 9 SLYTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGL 85 (179)
Q Consensus 9 ~l~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~ 85 (179)
.+......|+...+.-+++..|++..| ||.+||+|++||++||++||||+|++||||+||+||||++||+||+|+|+
T Consensus 136 ~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~ 215 (559)
T PTZ00317 136 KIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGL 215 (559)
T ss_pred hHHHHHhcCCccCceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccc
Confidence 344555666555566667777988888 56688999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHhCCCceeEeccc
Q psy1675 86 RQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSD 121 (179)
Q Consensus 86 r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~ 121 (179)
||+|++|++|++|+|||+.+++++| |+++|||||+
T Consensus 216 r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf 250 (559)
T PTZ00317 216 REKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDF 250 (559)
T ss_pred cCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhc
Confidence 9999999999999999999999999 7899888873
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.7e-36 Score=280.49 Aligned_cols=130 Identities=41% Similarity=0.653 Sum_probs=106.7
Q ss_pred hhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccccccc
Q psy1675 12 TALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQR 88 (179)
Q Consensus 12 t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~ 88 (179)
.....++.....-+++..|++..| ||.+||+|++||++||++||||+|+++|||+||+||||++||+||+|+|+|++
T Consensus 162 ~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~ 241 (581)
T PLN03129 162 SMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQP 241 (581)
T ss_pred HHHhcCCCcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCC
Confidence 334444445566667778998888 56688999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccccccc---c-ccCCCCCcc-cch
Q psy1675 89 RTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLD---S-GCLYPPPNI-IKD 142 (179)
Q Consensus 89 R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~~a~~---~-g~lyppl~~-Ir~ 142 (179)
|++|++|++|+|||+++++++|||+++|||||+-..+ ++. + ..-+|.||| ||+
T Consensus 242 Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~-af~iL~ryr~~i~~FnDDiQG 299 (581)
T PLN03129 242 RLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN-AFRLLQRYRTTHLCFNDDIQG 299 (581)
T ss_pred CCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc-HHHHHHHhccCCCEeccccch
Confidence 9999999999999999999999999998888733322 222 1 225555665 544
No 4
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-36 Score=276.71 Aligned_cols=149 Identities=38% Similarity=0.626 Sum_probs=118.7
Q ss_pred hhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc
Q psy1675 11 YTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 87 (179)
Q Consensus 11 ~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~ 87 (179)
......+++..+.-+++..|++..| ||.+||+|++||++||++||||+|++||||+||+||||++||+||+|+|+||
T Consensus 136 ~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~ 215 (563)
T PRK13529 136 EDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRH 215 (563)
T ss_pred HHHHhcCCcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCC
Confidence 3444555555566666777888888 6678899999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch---
Q psy1675 88 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD--- 142 (179)
Q Consensus 88 ~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~--- 142 (179)
+|++|++|++|+|||+.+++++| |+++||||| |+|+|+++..+.+..+++..++
T Consensus 216 ~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~ 294 (563)
T PRK13529 216 PRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLS 294 (563)
T ss_pred CCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChh
Confidence 99999999999999999999999 899988876 4555554444444433333211
Q ss_pred -----------hhHHHHHHHHHHHHHhCc
Q psy1675 143 -----------CSLKIAAKLVEQAFKDGT 160 (179)
Q Consensus 143 -----------~sl~IA~~v~~~ay~~gl 160 (179)
+|++||.++.+.+.+.|+
T Consensus 295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl 323 (563)
T PRK13529 295 DQRIVFLGAGSAGCGIADQIVAAMVREGL 323 (563)
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 666777777776666665
No 5
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.7e-36 Score=246.42 Aligned_cols=115 Identities=43% Similarity=0.773 Sum_probs=87.7
Q ss_pred hhhcCCCCCCCeeceEEeccCCccc---cccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc
Q psy1675 11 YTALAGIKPHQCLPITLDVGTNTQG---FSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 87 (179)
Q Consensus 11 ~t~~~gi~p~~~lpi~ldvGt~~~~---Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~ 87 (179)
......+..+..--+++..|++..+ ||.+||+|++||++||++||||+|++||||+||+||||++||+||+|+|+|+
T Consensus 56 ~~~l~n~~~~~v~v~VVTDG~rILGlGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~ 135 (182)
T PF00390_consen 56 EEILRNWPERDVRVIVVTDGERILGLGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRH 135 (182)
T ss_dssp HHHHTTSS-SS--EEEEE-SSSBTTTBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SS
T ss_pred HHHHHhhhccCceEEEEeCchhhccccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhcccc
Confidence 3445555555555566777998888 6678899999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHhCCCceeEeccccccc
Q psy1675 88 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTE 125 (179)
Q Consensus 88 ~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~ 125 (179)
+|++|++|++|+|||+++++++|||++++||||+...+
T Consensus 136 ~R~~g~~y~~fvdefv~av~~~~gp~~~IqfEDf~~~n 173 (182)
T PF00390_consen 136 PRVRGEEYDEFVDEFVEAVKRRFGPNALIQFEDFSNPN 173 (182)
T ss_dssp B---THHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCH
T ss_pred CCCChhhhhhCHHHHHHHHHHHhCCCeEEEEecCCChh
Confidence 99999999999999999999999999999999855443
No 6
>KOG1257|consensus
Probab=99.96 E-value=2.1e-31 Score=244.10 Aligned_cols=170 Identities=33% Similarity=0.482 Sum_probs=148.2
Q ss_pred CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCC--CCcccccee-----------------------------
Q psy1675 1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPS--MGIPVGKLS----------------------------- 49 (179)
Q Consensus 1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~g--mgI~~gKl~----------------------------- 49 (179)
||||||||+|||+||||+|++||||+|||||||+.|+.|+ ||.+..|+.
T Consensus 183 mgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFED 262 (582)
T KOG1257|consen 183 MGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFED 262 (582)
T ss_pred ccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehh
Confidence 8999999999999999999999999999999999999988 566666666
Q ss_pred --------------------------------------------------------------------------------
Q psy1675 50 -------------------------------------------------------------------------------- 49 (179)
Q Consensus 50 -------------------------------------------------------------------------------- 49 (179)
T Consensus 263 F~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~ee 342 (582)
T KOG1257|consen 263 FANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEE 342 (582)
T ss_pred ccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHH
Confidence
Q ss_pred --------------------------------------eeeeccCCCCCcccceeccCCCCchhcccCcccccccc----
Q psy1675 50 --------------------------------------LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ---- 87 (179)
Q Consensus 50 --------------------------------------Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~---- 87 (179)
|..++.-++|+.+++.+-..|++++|+|++|.-.++|+
T Consensus 343 A~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFa 422 (582)
T KOG1257|consen 343 ARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFA 422 (582)
T ss_pred HhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEe
Confidence 77888999999999999999999999999999999998
Q ss_pred ----------------cCCCchhhHHHHHHHHH--HHHHHhCC----Cce--------------eEecc-----------
Q psy1675 88 ----------------RRTTGQAYDDFIEEFMQ--AVVARYGQ----HVL--------------IQTLS----------- 120 (179)
Q Consensus 88 ----------------~R~~g~~y~~f~~~f~~--av~~~y~p----~~l--------------iqFeD----------- 120 (179)
+++.|++.++++++|.. .--++|.| |++ .+..|
T Consensus 423 lSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA 502 (582)
T KOG1257|consen 423 LSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALA 502 (582)
T ss_pred cCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHH
Confidence 88999999999999933 11344433 232 12233
Q ss_pred ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhCccccCCccceE
Q psy1675 121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLF 170 (179)
Q Consensus 121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~~~~~~~~ 170 (179)
..++++++++|++||||++||++|+.||.+|.+|||++|+|++.|.|+-+
T Consensus 503 ~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~ 552 (582)
T KOG1257|consen 503 EQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDK 552 (582)
T ss_pred hhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccH
Confidence 67899999999999999999999999999999999999999999999743
No 7
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=99.90 E-value=2.7e-25 Score=207.21 Aligned_cols=139 Identities=27% Similarity=0.446 Sum_probs=124.9
Q ss_pred CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675 1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 80 (179)
Q Consensus 1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~ 80 (179)
|+|++|||+|||+||||+|++||||+||+|||||.|+.|++++ |++..|+ .|..|+++++
T Consensus 194 m~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~Yl------------G~r~~Rv------~g~eY~~~~d-- 253 (581)
T PLN03129 194 MGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYI------------GLRQPRL------TGEEYDELVD-- 253 (581)
T ss_pred cccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCcccc------------CcCCCCC------chhhHHHhHH--
Confidence 7999999999999999999999999999999999999999776 8999998 9999999999
Q ss_pred ccccccccCC-Cc--hhhHHHHHHHHHHHHHHhCCCceeEeccccccccccccccCCCCCcccch--------------h
Q psy1675 81 LYIGLRQRRT-TG--QAYDDFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------C 143 (179)
Q Consensus 81 ~yig~r~~R~-~g--~~y~~f~~~f~~av~~~y~p~~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~ 143 (179)
-|+-..++|+ +. -+||||..+.+..++++|+ +.+++||||+|+|+++..+.+..+++..++ +
T Consensus 254 efv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr-~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA 332 (581)
T PLN03129 254 EFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYR-TTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEA 332 (581)
T ss_pred HHHHHHHHHhCCccEEehhhcCCccHHHHHHHhc-cCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHH
Confidence 7777777787 43 4999999999999999995 778899999999999998888877765432 9
Q ss_pred hHHHHHHHHHHHHHh-Cc
Q psy1675 144 SLKIAAKLVEQAFKD-GT 160 (179)
Q Consensus 144 sl~IA~~v~~~ay~~-gl 160 (179)
|++||.++...+.++ |+
T Consensus 333 gigia~ll~~~~~~~~Gl 350 (581)
T PLN03129 333 GTGIAELIALAMSRQTGI 350 (581)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999999998864 87
No 8
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=99.83 E-value=6.9e-22 Score=183.81 Aligned_cols=118 Identities=25% Similarity=0.260 Sum_probs=90.5
Q ss_pred eeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH--
Q psy1675 50 LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV-- 107 (179)
Q Consensus 50 Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~-- 107 (179)
|..++.+++|+.+|+++-..|.+++|+++.|.-...|+ +|+.|++.++.+++|..-..
T Consensus 373 L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G 452 (559)
T PTZ00317 373 LEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNG 452 (559)
T ss_pred HHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCC
Confidence 44566889999999999999999999999877666666 67778888888888732211
Q ss_pred HHhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHh
Q psy1675 108 ARYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKD 158 (179)
Q Consensus 108 ~~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~ 158 (179)
+.|-| |++ -+..| +.++++.+..+++|||+.+||++|..||..|+++||++
T Consensus 453 ~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~ 532 (559)
T PTZ00317 453 KTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEM 532 (559)
T ss_pred eeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHh
Confidence 11212 121 11122 67888889999999999999999999999999999999
Q ss_pred CccccCCcc
Q psy1675 159 GTATKVGTA 167 (179)
Q Consensus 159 gla~~~~~~ 167 (179)
|+|+..+.|
T Consensus 533 G~A~~~~~~ 541 (559)
T PTZ00317 533 GIAKNKDLP 541 (559)
T ss_pred CCCccCCCC
Confidence 998864333
No 9
>PRK13529 malate dehydrogenase; Provisional
Probab=99.81 E-value=1.9e-21 Score=181.06 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=89.8
Q ss_pred eeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH--H
Q psy1675 51 YTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV--A 108 (179)
Q Consensus 51 y~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~--~ 108 (179)
..++.+++|+.+|+++-..|.+++|+++.|.-...|+ +|+.|++.++.+++|..-.. +
T Consensus 375 ~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~ 454 (563)
T PRK13529 375 LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGK 454 (563)
T ss_pred HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCe
Confidence 4677889999999999999999999999887776776 56667788888887732110 1
Q ss_pred HhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhC
Q psy1675 109 RYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDG 159 (179)
Q Consensus 109 ~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~g 159 (179)
.|-| |++ -+..| +.++++.+..+.+|||+.+||++|..||..|+++|+++|
T Consensus 455 ~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G 534 (563)
T PRK13529 455 TYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEG 534 (563)
T ss_pred EeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhC
Confidence 1112 121 11223 678888899999999999999999999999999999999
Q ss_pred ccccCCccc
Q psy1675 160 TATKVGTAT 168 (179)
Q Consensus 160 la~~~~~~~ 168 (179)
+|+. +.|+
T Consensus 535 lA~~-~~~~ 542 (563)
T PRK13529 535 LARE-TSDE 542 (563)
T ss_pred CCCC-CCHH
Confidence 9874 5443
No 10
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=99.74 E-value=1.8e-20 Score=153.41 Aligned_cols=91 Identities=34% Similarity=0.702 Sum_probs=72.5
Q ss_pred CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675 1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 80 (179)
Q Consensus 1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~ 80 (179)
|+|++|||+|||+||||+|++||||+|||||||+.|+.|++++ |++..|+ .|..|+++++
T Consensus 89 m~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~------------G~r~~R~------~g~~y~~fvd-- 148 (182)
T PF00390_consen 89 MGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYL------------GLRHPRV------RGEEYDEFVD-- 148 (182)
T ss_dssp HHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--------------S-SSB---------THHHHHHHH--
T ss_pred EEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchh------------ccccCCC------ChhhhhhCHH--
Confidence 6899999999999999999999999999999999999999876 8999998 9999999998
Q ss_pred ccccccccCC-Cch--hhHHHHHHHHHHHHHHhC
Q psy1675 81 LYIGLRQRRT-TGQ--AYDDFIEEFMQAVVARYG 111 (179)
Q Consensus 81 ~yig~r~~R~-~g~--~y~~f~~~f~~av~~~y~ 111 (179)
-++...++|+ +.. |||||..+++..++++|+
T Consensus 149 efv~av~~~~gp~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 149 EFVEAVKRRFGPNALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp HHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEecCCChhHHHHHHhcC
Confidence 7777777777 555 999999999999999993
No 11
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=99.40 E-value=2.1e-14 Score=130.02 Aligned_cols=127 Identities=26% Similarity=0.301 Sum_probs=108.0
Q ss_pred eceEEeccCCcccccc----CCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCch--hhH
Q psy1675 23 LPITLDVGTNTQGFSK----PSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQ--AYD 96 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~----~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~--~y~ 96 (179)
+-+++..||...|||+ .||.|..||+.||+.||||+ ++||+||+||+++ +. .++-.-.++++|. |++
T Consensus 78 ~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e-i~---~~Vkal~p~FgginLedi 150 (432)
T COG0281 78 LVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE-II---EFVKALEPTFGGINLEDI 150 (432)
T ss_pred eEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-HH---HHHHHhhhcCCCcceeec
Confidence 4456777999999776 45999999999999999999 9999999999987 33 4666777888887 999
Q ss_pred HHHHHHHHHHHHHhCCCceeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHHHHHH
Q psy1675 97 DFIEEFMQAVVARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVEQAFK 157 (179)
Q Consensus 97 ~f~~~f~~av~~~y~p~~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~~ay~ 157 (179)
+|..-|....+.+|. .-+..|+||||+|+.+..+.++.+++...+ +|+.||.++.+++.+
T Consensus 151 ~ap~cf~ie~~lr~~-~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~ 224 (432)
T COG0281 151 DAPRCFAIEERLRYR-MNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK 224 (432)
T ss_pred ccchhhHHHHHHhhc-CCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC
Confidence 999999999999996 556889999999999999998888776532 888999998887765
No 12
>PRK12861 malic enzyme; Reviewed
Probab=99.16 E-value=2.2e-12 Score=124.55 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=92.5
Q ss_pred ceEEeccCCcccccc---CC-CCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHHH
Q psy1675 24 PITLDVGTNTQGFSK---PS-MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99 (179)
Q Consensus 24 pi~ldvGt~~~~Lg~---~g-mgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f~ 99 (179)
-+++..||...|||. .| |+|..||+.||+++|||+ ++||.+|. .+.++++ -++-.-.+++.+-+||||.
T Consensus 69 v~VvtdG~~vLGLGdiG~~a~~pvmeGK~~L~~~~agid---~~di~~~~-~dpd~~v---~~v~a~~~~fg~i~lED~~ 141 (764)
T PRK12861 69 VGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGID---VFDIEINE-TDPDKLV---DIIAGLEPTFGGINLEDIK 141 (764)
T ss_pred EEEEecchhhccCCCcCcccccchHHHHHHHHhhccCCC---ccccccCC-CCHHHHH---HHHHHHHhhcCCceeeecc
Confidence 556778999999766 33 777779999999999999 44444443 3334444 3555566788888999999
Q ss_pred HHHHHHHHHHhCCC-ceeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675 100 EEFMQAVVARYGQH-VLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE 153 (179)
Q Consensus 100 ~~f~~av~~~y~p~-~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~ 153 (179)
.+.+..++++|+.+ .+.+||||+|+|+.+..+.++.+++..++ +|++||..+..
T Consensus 142 ~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~ 210 (764)
T PRK12861 142 APECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD 210 (764)
T ss_pred CchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH
Confidence 99999999999532 36789999999999999988877765432 66777655543
No 13
>PRK12862 malic enzyme; Reviewed
Probab=99.13 E-value=3.2e-12 Score=123.67 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=92.1
Q ss_pred eceEEeccCCcccccc---CC-CCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCC---chhh
Q psy1675 23 LPITLDVGTNTQGFSK---PS-MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTT---GQAY 95 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~---~g-mgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~---g~~y 95 (179)
+-+++..||+..|||. +| |+|..||+.||+++|||+ ++|+|+||++- .-++...+.+.+ +-+|
T Consensus 72 ~v~vvtdg~~vLGlGd~G~~~~~pv~egK~~l~~~~~gi~-------~~~i~~~~~d~---d~~v~~v~~~~p~f~~i~~ 141 (763)
T PRK12862 72 LVAVVSNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGID-------VFDIELDESDP---DKLVEIVAALEPTFGGINL 141 (763)
T ss_pred EEEEEechhhhccccccCcccccchHHHHHHHHHhhcCCC-------ccccccCCCCH---HHHHHHHHHhCCCcceeee
Confidence 4567788999999766 43 889999999999999999 55666666622 234444444444 4499
Q ss_pred HHHHHHHHHHHHHHhCCCc--eeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675 96 DDFIEEFMQAVVARYGQHV--LIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE 153 (179)
Q Consensus 96 ~~f~~~f~~av~~~y~p~~--liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~ 153 (179)
|||..+.+..++++|. +. +.+|+||+|+|+.+..+.++..++...+ +|++||..+..
T Consensus 142 ED~~~~~~f~i~~~~~-~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~ 214 (763)
T PRK12862 142 EDIKAPECFYIERELR-ERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS 214 (763)
T ss_pred ecccCchHHHHHHHHH-hcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH
Confidence 9999999999999995 55 6889999999999998888876655422 77788877765
No 14
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=99.01 E-value=1.7e-11 Score=118.42 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=90.4
Q ss_pred eceEEeccCCccccccC----CCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCC---Cchhh
Q psy1675 23 LPITLDVGTNTQGFSKP----SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRT---TGQAY 95 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~~----gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~---~g~~y 95 (179)
+-+++..||...|||.- ||++..||+.||+++|||+ ++|+|+||++. .-++...+.+. -+-++
T Consensus 64 ~v~vvtdg~~vLGlGd~G~~a~~pv~egK~~l~~~~~gid-------~~~i~~~~~d~---de~v~~v~~~~p~~g~i~~ 133 (752)
T PRK07232 64 LVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGID-------VFDIEVDEEDP---DKFIEAVAALEPTFGGINL 133 (752)
T ss_pred EEEEEccchhhccccccccccCccHHHHHHHHHHhhcCCC-------ccccccCCCCH---HHHHHHHHHhCCCccEEee
Confidence 35567779999997763 4666669999999999999 56777777742 13444444444 34599
Q ss_pred HHHHHHHHHHHHHHhCCCc--eeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675 96 DDFIEEFMQAVVARYGQHV--LIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE 153 (179)
Q Consensus 96 ~~f~~~f~~av~~~y~p~~--liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~ 153 (179)
|||..+.+..++++|+ +. +.+|+||+|+|+.+..+.++.+++..++ +|++||..+..
T Consensus 134 ED~~~p~~f~i~~~~~-~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~ 206 (752)
T PRK07232 134 EDIKAPECFYIEEKLR-ERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA 206 (752)
T ss_pred eecCCchHHHHHHHHH-HhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH
Confidence 9999999999999995 54 4889999999999998888777665432 77777777665
No 15
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=98.08 E-value=2.8e-07 Score=80.27 Aligned_cols=120 Identities=24% Similarity=0.304 Sum_probs=89.9
Q ss_pred eeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH
Q psy1675 48 LSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV 107 (179)
Q Consensus 48 l~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~ 107 (179)
-+|..++.-++|+.+|+++-..|.+++|+++.|.-...|+ +|+.|++.++.+++|..-..
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~ 174 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEY 174 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeee
Confidence 4678888899999999999999999999999777655666 44456666777766632110
Q ss_pred --HHhCCC----ce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHH
Q psy1675 108 --ARYGQH----VL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAF 156 (179)
Q Consensus 108 --~~y~p~----~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay 156 (179)
+.|-|+ ++ -+..| +.++++.+..+.+||++.++|+++..+|..|+++|+
T Consensus 175 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~r~vs~~VA~aVa~~A~ 254 (279)
T cd05312 175 NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNIREISAQIAVAVAKYAY 254 (279)
T ss_pred CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHH
Confidence 112121 11 12223 567778888999999999999999999999999999
Q ss_pred HhCccccCCcc
Q psy1675 157 KDGTATKVGTA 167 (179)
Q Consensus 157 ~~gla~~~~~~ 167 (179)
++|+|...+.|
T Consensus 255 ~~gla~~~~~~ 265 (279)
T cd05312 255 EEGLATRYPPP 265 (279)
T ss_pred HcCCCCCCCCH
Confidence 99998766654
No 16
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=97.88 E-value=3.3e-07 Score=78.98 Aligned_cols=109 Identities=27% Similarity=0.282 Sum_probs=77.9
Q ss_pred eeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHHH
Q psy1675 48 LSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAVV 107 (179)
Q Consensus 48 l~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av~ 107 (179)
.+|..++.+++|+.+|+++-..|.+++|+++.|.-...|+ +|..|++.++.+++|..-..
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~pv~~ 175 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFPPVEY 175 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS----EEE
T ss_pred cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccCCeee
Confidence 4678899999999999999999999999999777766677 66777788888888832100
Q ss_pred --HHhCCC----ce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHHH
Q psy1675 108 --ARYGQH----VL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAF 156 (179)
Q Consensus 108 --~~y~p~----~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay 156 (179)
+.|-|+ ++ -+..| +.++++++..+.+||++.++|++|..||..|+++||
T Consensus 176 ~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 176 NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFDIREVSARVAAAVAKQAI 255 (255)
T ss_dssp TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCcHhHHHHHHHHHHHHHhC
Confidence 111111 11 00112 788888999999999999999999999999999987
No 17
>PRK12861 malic enzyme; Reviewed
Probab=97.35 E-value=6.8e-05 Score=73.26 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=68.9
Q ss_pred cCCCCCcccce---------------eccCCCCchhcccCcccccccccCCCchhhHHHHHHHHHHHHHHhCCCceeEec
Q psy1675 55 AGIKPHQCLPI---------------TLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQTL 119 (179)
Q Consensus 55 ~Gi~P~~~lpv---------------~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f~~~f~~av~~~y~p~~liqFe 119 (179)
|=+-|..-+|| ++|+|||| +|| ++|+ +|++++..+|| . ||||
T Consensus 82 GdiG~~a~~pvmeGK~~L~~~~agid~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg-~--i~lE 138 (764)
T PRK12861 82 GNIGALASKPVMEGKAVLFKKFAGIDVFDIEINE----TDP---------------DKLV-DIIAGLEPTFG-G--INLE 138 (764)
T ss_pred CCcCcccccchHHHHHHHHhhccCCCccccccCC----CCH---------------HHHH-HHHHHHHhhcC-C--ceee
Confidence 34556666787 69999998 666 8899 99999999995 5 9999
Q ss_pred cccccccccc------cccCCCCCcc-cch------hhHHHHHHHHHHHHHhCc-------cccCCccceEE
Q psy1675 120 SDLVTEADLD------SGCLYPPPNI-IKD------CSLKIAAKLVEQAFKDGT-------ATKVGTATLFR 171 (179)
Q Consensus 120 D~~vt~~a~~------~g~lyppl~~-Ir~------~sl~IA~~v~~~ay~~gl-------a~~~~~~~~~~ 171 (179)
|+-. ..+|. ...-+|.|+| ||+ +++..|.++++...++.. |+++++++++.
T Consensus 139 D~~~-p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~ 209 (764)
T PRK12861 139 DIKA-PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLV 209 (764)
T ss_pred eccC-chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHH
Confidence 8544 44444 2225999999 776 777888888887777765 66677666543
No 18
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=97.03 E-value=3.6e-05 Score=66.44 Aligned_cols=107 Identities=26% Similarity=0.291 Sum_probs=78.8
Q ss_pred eeeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHHHHH--
Q psy1675 49 SLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFMQAV-- 106 (179)
Q Consensus 49 ~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~~av-- 106 (179)
+|-.++.-++|+.+|+++-..|.+++|+++.|.-...|+ +|+.|++.++.+++|..-.
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~ 176 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELN 176 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccC
Confidence 577888889999999999999999999999887666776 4555666666666662210
Q ss_pred HHHhCC----Cce--------------eEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHHH
Q psy1675 107 VARYGQ----HVL--------------IQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQA 155 (179)
Q Consensus 107 ~~~y~p----~~l--------------iqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~a 155 (179)
-+.|.| |++ -+..| +.++++++..+.+||++.+||+++..||..|+++|
T Consensus 177 g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 177 GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcchhhhHHHHHHHHHHHhC
Confidence 011111 111 12233 67788888999999999999999999999999864
No 19
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.70 E-value=0.00077 Score=61.95 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=30.2
Q ss_pred cccCCCCCcccchhhHHHHHHHHHHHHHhCcccc
Q psy1675 130 SGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163 (179)
Q Consensus 130 ~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~ 163 (179)
.+.++|+..+.|.++. +|..|++.|.+.|+|++
T Consensus 375 ~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~ 407 (432)
T COG0281 375 EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARR 407 (432)
T ss_pred cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccC
Confidence 3679999999999999 99999999999999874
No 20
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.98 E-value=0.0086 Score=58.78 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCCc-eeEeccccccccccc------cccCCCCCcc-cch------hhHHHHHHHHHHHHHhCc----
Q psy1675 99 IEEFMQAVVARYGQHV-LIQTLSDLVTEADLD------SGCLYPPPNI-IKD------CSLKIAAKLVEQAFKDGT---- 160 (179)
Q Consensus 99 ~~~f~~av~~~y~p~~-liqFeD~~vt~~a~~------~g~lyppl~~-Ir~------~sl~IA~~v~~~ay~~gl---- 160 (179)
.|||+.+++.+| |+. .||||| +-...+|. ...-+|.|+| +++ +++..|.++++.-.++..
T Consensus 114 ~de~v~~v~~~~-p~~g~i~~ED-~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~ 191 (752)
T PRK07232 114 PDKFIEAVAALE-PTFGGINLED-IKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVS 191 (752)
T ss_pred HHHHHHHHHHhC-CCccEEeeee-cCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 799999999999 676 999997 44555554 1223899999 766 777888888887777665
Q ss_pred ---cccCCccceEE
Q psy1675 161 ---ATKVGTATLFR 171 (179)
Q Consensus 161 ---a~~~~~~~~~~ 171 (179)
|+++++++++.
T Consensus 192 GaGaag~~~a~~l~ 205 (752)
T PRK07232 192 GAGAAAIACLNLLV 205 (752)
T ss_pred CccHHHHHHHHHHH
Confidence 67777776654
No 21
>PRK12862 malic enzyme; Reviewed
Probab=94.94 E-value=0.0077 Score=59.15 Aligned_cols=70 Identities=16% Similarity=0.036 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCC-ceeEeccccccccccc---c--cc-CCCCCcc-cch------hhHHHHHHHHHHHHHhCc-----
Q psy1675 100 EEFMQAVVARYGQH-VLIQTLSDLVTEADLD---S--GC-LYPPPNI-IKD------CSLKIAAKLVEQAFKDGT----- 160 (179)
Q Consensus 100 ~~f~~av~~~y~p~-~liqFeD~~vt~~a~~---~--g~-lyppl~~-Ir~------~sl~IA~~v~~~ay~~gl----- 160 (179)
|+|+++++.+| |+ ..|||||+. ...+|. . .. =+|.|+| ||+ +++..|.++++.-.++..
T Consensus 123 d~~v~~v~~~~-p~f~~i~~ED~~-~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~G 200 (763)
T PRK12862 123 DKLVEIVAALE-PTFGGINLEDIK-APECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASG 200 (763)
T ss_pred HHHHHHHHHhC-CCcceeeeeccc-CchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEC
Confidence 89999999999 78 799999754 444444 1 11 2899999 776 777888888887776665
Q ss_pred --cccCCccceEE
Q psy1675 161 --ATKVGTATLFR 171 (179)
Q Consensus 161 --a~~~~~~~~~~ 171 (179)
|+++++++++.
T Consensus 201 aGaag~~~a~~l~ 213 (763)
T PRK12862 201 AGAAALACLDLLV 213 (763)
T ss_pred hhHHHHHHHHHHH
Confidence 66777776654
No 22
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.44 E-value=0.14 Score=43.06 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.9
Q ss_pred ccccccccccccCCCCCcccchhhHHHHHHHHHHH
Q psy1675 121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQA 155 (179)
Q Consensus 121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~a 155 (179)
+.++++++..+.+|||+.+ |++|..||..|++++
T Consensus 193 ~~~~~~~~~~~~~~P~~~~-~~~~~~va~~v~~~a 226 (226)
T cd05311 193 DLAEEEVLGEEYIIPTPFD-PRVVPRVATAVAKAA 226 (226)
T ss_pred hhCCccccCCCcccCCCCc-hhHHHHHHHHHHHhC
Confidence 5667777889999999999 999999999998864
No 23
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=26.11 E-value=35 Score=31.30 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=30.0
Q ss_pred cCCCCCCCeeceEEeccCCcc--ccccCCCCcccccee
Q psy1675 14 LAGIKPHQCLPITLDVGTNTQ--GFSKPSMGIPVGKLS 49 (179)
Q Consensus 14 ~~gi~p~~~lpi~ldvGt~~~--~Lg~~gmgI~~gKl~ 49 (179)
.-.+.++.-+|++.|.||=.. .+|+.|.|||.+||.
T Consensus 60 ~VsVe~G~Ev~vt~D~Gt~rldgdqgnsg~gip~sRl~ 97 (466)
T PF09505_consen 60 MVSVEQGNEVPVTHDIGTLRLDGDQGNSGVGIPSSRLV 97 (466)
T ss_pred eeeeccCcccceeeccceEEeccccCCCccCcchhhhh
Confidence 346788888999999999443 389999999999996
No 24
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=21.76 E-value=55 Score=23.26 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=20.9
Q ss_pred cccCCCCCcccchhhHHHHHHHHHHH
Q psy1675 130 SGCLYPPPNIIKDCSLKIAAKLVEQA 155 (179)
Q Consensus 130 ~g~lyppl~~Ir~~sl~IA~~v~~~a 155 (179)
.+.++.||+.|++.|-..|.+|.++-
T Consensus 22 ~~~Ir~gl~~Ikglg~~~a~~I~~~R 47 (90)
T PF14579_consen 22 NNAIRLGLSAIKGLGEEVAEKIVEER 47 (90)
T ss_dssp -TEEE-BGGGSTTS-HHHHHHHHHHH
T ss_pred CCEEeehHhhcCCCCHHHHHHHHHhH
Confidence 36799999999999999999999865
Done!