Query psy1675
Match_columns 179
No_of_seqs 200 out of 921
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 21:02:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pj3_A NAD-dependent malic enz 100.0 6.2E-35 2.1E-39 269.6 3.5 145 16-160 129-312 (564)
2 1gq2_A Malic enzyme; oxidoredu 100.0 9.4E-35 3.2E-39 267.8 3.3 150 11-160 122-310 (555)
3 1o0s_A NAD-ME, NAD-dependent m 100.0 1.4E-34 4.6E-39 268.4 2.5 149 12-160 161-348 (605)
4 1o0s_A NAD-ME, NAD-dependent m 99.7 1.1E-19 3.7E-24 168.9 -1.2 115 50-168 390-559 (605)
5 1pj3_A NAD-dependent malic enz 99.6 3.7E-17 1.3E-21 151.3 -1.6 93 1-113 157-252 (564)
6 1gq2_A Malic enzyme; oxidoredu 99.6 5.7E-17 1.9E-21 149.7 -2.3 93 1-113 155-250 (555)
7 3nv9_A Malic enzyme; rossmann 99.5 7.3E-17 2.5E-21 146.9 -8.2 125 23-153 92-240 (487)
8 2a9f_A Putative malic enzyme ( 99.1 9.3E-13 3.2E-17 117.9 -7.6 123 23-153 67-209 (398)
9 1vl6_A Malate oxidoreductase; 98.8 5.1E-10 1.7E-14 99.9 1.4 109 23-138 71-184 (388)
10 1vl6_A Malate oxidoreductase; 98.3 4.9E-09 1.7E-13 93.6 -7.9 28 1-31 93-120 (388)
11 3nv9_A Malic enzyme; rossmann 97.4 1.8E-05 6.2E-10 72.3 -0.2 43 121-164 392-434 (487)
12 2dvm_A Malic enzyme, 439AA lon 97.2 3.2E-06 1.1E-10 76.4 -8.0 105 23-135 65-175 (439)
13 2a9f_A Putative malic enzyme ( 95.6 0.0019 6.6E-08 57.7 -0.1 38 121-159 354-391 (398)
14 2dvm_A Malic enzyme, 439AA lon 92.2 0.11 3.9E-06 46.7 4.1 39 129-168 367-405 (439)
No 1
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=6.2e-35 Score=269.57 Aligned_cols=145 Identities=40% Similarity=0.697 Sum_probs=117.5
Q ss_pred CCCCCCeeceEEeccCCccccc---cCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCc
Q psy1675 16 GIKPHQCLPITLDVGTNTQGFS---KPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTG 92 (179)
Q Consensus 16 gi~p~~~lpi~ldvGt~~~~Lg---~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g 92 (179)
.++.+...-+++..|+...||| .+||+||+||++||++||||+|+++|||+||+||||++||+||+|+|+||+|++|
T Consensus 129 n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g 208 (564)
T 1pj3_A 129 NWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRT 208 (564)
T ss_dssp TCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCS
T ss_pred hCCCCCceEEEEEcccccccCCCCCCCcccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCch
Confidence 3333445777888899999954 5679999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch--------
Q psy1675 93 QAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD-------- 142 (179)
Q Consensus 93 ~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~-------- 142 (179)
++|++|+|||+++++.+|||+++||||| |+|+|+++..+.++.+++..++
T Consensus 209 ~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv 288 (564)
T 1pj3_A 209 QQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKIL 288 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEE
T ss_pred hhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHcEEE
Confidence 9999999999999999999999998887 4555555554444443333211
Q ss_pred ------hhHHHHHHHHHHHHHhCc
Q psy1675 143 ------CSLKIAAKLVEQAFKDGT 160 (179)
Q Consensus 143 ------~sl~IA~~v~~~ay~~gl 160 (179)
+|++||.++...+.+.|+
T Consensus 289 ~~GAGaAgigia~ll~~~m~~~Gl 312 (564)
T 1pj3_A 289 FLGAGEAALGIANLIVMSMVENGL 312 (564)
T ss_dssp EECCSHHHHHHHHHHHHHHHHTTC
T ss_pred EeCCCHHHHHHHHHHHHHHHHcCC
Confidence 666777777766666665
No 2
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=9.4e-35 Score=267.81 Aligned_cols=150 Identities=46% Similarity=0.731 Sum_probs=122.1
Q ss_pred hhhcCCCCCCCeeceEEeccCCccccc---cCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccc
Q psy1675 11 YTALAGIKPHQCLPITLDVGTNTQGFS---KPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ 87 (179)
Q Consensus 11 ~t~~~gi~p~~~lpi~ldvGt~~~~Lg---~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~ 87 (179)
+.....++.+...-+++..||...||| .+||+||+||++||++||||+|+++|||+||+||||++||+||+|+|+||
T Consensus 122 ~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~ 201 (555)
T 1gq2_A 122 ATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRH 201 (555)
T ss_dssp HHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSS
T ss_pred HHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCC
Confidence 333334434446667788899999955 46799999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch---
Q psy1675 88 RRTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD--- 142 (179)
Q Consensus 88 ~R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~--- 142 (179)
+|++|++|++|+|||++++..+|||+++||||| |+|+|+.+..+.++.+++..++
T Consensus 202 ~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~ 281 (555)
T 1gq2_A 202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLS 281 (555)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred CCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChh
Confidence 999999999999999999999999999888876 5666666665555554443321
Q ss_pred -----------hhHHHHHHHHHHHHHhCc
Q psy1675 143 -----------CSLKIAAKLVEQAFKDGT 160 (179)
Q Consensus 143 -----------~sl~IA~~v~~~ay~~gl 160 (179)
+|++||.++..++.+.|+
T Consensus 282 d~riv~~GAGaAg~gia~ll~~~~~~~G~ 310 (555)
T 1gq2_A 282 DHTVLFQGAGEAALGIANLIVMAMQKEGV 310 (555)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHHHTC
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 677777777777776675
No 3
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=1.4e-34 Score=268.42 Aligned_cols=149 Identities=39% Similarity=0.676 Sum_probs=119.8
Q ss_pred hhcCCCCCCCeeceEEeccCCcccc---ccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCccccccccc
Q psy1675 12 TALAGIKPHQCLPITLDVGTNTQGF---SKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQR 88 (179)
Q Consensus 12 t~~~gi~p~~~lpi~ldvGt~~~~L---g~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~ 88 (179)
.....+..+...-+++..||...|| |.+||+||+||++||++||||+|+++|||+||+||||++||+||+|+|+||+
T Consensus 161 ~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~ 240 (605)
T 1o0s_A 161 QILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHK 240 (605)
T ss_dssp HHHTTSSCSCCCEEEEECSSCBTTTBCCGGGGGHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSC
T ss_pred HHHhcCCCCCceEEEEEccccceecCCCCCCcCcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCC
Confidence 3333344445677778889999995 4567999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHhCCCceeEecc----------------------ccccccccccccCCCCCcccch----
Q psy1675 89 RTTGQAYDDFIEEFMQAVVARYGQHVLIQTLS----------------------DLVTEADLDSGCLYPPPNIIKD---- 142 (179)
Q Consensus 89 R~~g~~y~~f~~~f~~av~~~y~p~~liqFeD----------------------~~vt~~a~~~g~lyppl~~Ir~---- 142 (179)
|++|++|++|+|||++++..+|||+++||||| |+|+|+++..+.++.+++..++
T Consensus 241 Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d 320 (605)
T 1o0s_A 241 RVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQ 320 (605)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhh
Confidence 99999999999999999999999999988877 5555555555554444433211
Q ss_pred ----------hhHHHHHHHHHHHHHhCc
Q psy1675 143 ----------CSLKIAAKLVEQAFKDGT 160 (179)
Q Consensus 143 ----------~sl~IA~~v~~~ay~~gl 160 (179)
+|++||..+..++.+.|+
T Consensus 321 ~riv~~GAGaAgigia~ll~~~m~~~Gl 348 (605)
T 1o0s_A 321 EKYLFFGAGAASTGIAEMIVHQMQNEGI 348 (605)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHTTTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 666777777776666665
No 4
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=99.74 E-value=1.1e-19 Score=168.90 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=84.5
Q ss_pred eeeeccCCCCCcccceeccCCCCchhcccCcccccccc--------------------cCCCchhhHHHHHHHH------
Q psy1675 50 LYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQ--------------------RRTTGQAYDDFIEEFM------ 103 (179)
Q Consensus 50 Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~--------------------~R~~g~~y~~f~~~f~------ 103 (179)
|..+..+++|+..|+++...|.+++|+++.|.-...|+ +|+.|++.++.+++|.
T Consensus 390 L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATGspF~pV~~~G 469 (605)
T 1o0s_A 390 ILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNG 469 (605)
T ss_dssp HHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETT
T ss_pred HHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEECCCCCCeeECC
Confidence 55566678899999999999999999998666444554 3455666666666540
Q ss_pred ------------------HHHHHHhCCCceeEecc-----------ccccccccccccCCCCCcccchhhHHHHHHHHHH
Q psy1675 104 ------------------QAVVARYGQHVLIQTLS-----------DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQ 154 (179)
Q Consensus 104 ------------------~av~~~y~p~~liqFeD-----------~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ 154 (179)
..++..- .+ +.+| ++++++.+..+.+||++.+||++|..||..|+++
T Consensus 470 rs~~pnQ~NN~liFPGi~lGal~~~-A~---~Itd~M~~aAA~aLA~~v~~~~~~~~~i~P~~~dir~vs~~VA~AVa~~ 545 (605)
T 1o0s_A 470 HTYKPGQGNNAYIFPGVALGTILFQ-IR---HVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKY 545 (605)
T ss_dssp EEECCEECCGGGTHHHHHHHHHHHT-BS---CCCHHHHHHHHHHHHHTCCHHHHTTTCCSCCGGGHHHHHHHHHHHHHHH
T ss_pred EEeccccccceeeccchhhhhhhcC-Ce---EcCHHHHHHHHHHHHhhcccccCCCCcccCCcchhhHhHHHHHHHHHHH
Confidence 1111111 01 1123 6777888889999999999999999999999999
Q ss_pred HHHhCccccCCccc
Q psy1675 155 AFKDGTATKVGTAT 168 (179)
Q Consensus 155 ay~~gla~~~~~~~ 168 (179)
|+++|+|+..+.|+
T Consensus 546 A~~~GvA~~~~~~~ 559 (605)
T 1o0s_A 546 CYKNGTANLYPQPE 559 (605)
T ss_dssp HHHTTCBCSSSCCS
T ss_pred HHHcCCCCCCCChH
Confidence 99999998766654
No 5
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=99.60 E-value=3.7e-17 Score=151.31 Aligned_cols=93 Identities=33% Similarity=0.595 Sum_probs=85.0
Q ss_pred CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675 1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 80 (179)
Q Consensus 1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~ 80 (179)
|+|||||++|||+||||+|++|+||+||+||||+.|+.|++++ |++..|+ .|..|++|+|
T Consensus 157 m~ipvGKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYl------------G~r~~Rv------~g~eYd~fvd-- 216 (564)
T 1pj3_A 157 MGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYM------------GLYQKRD------RTQQYDDLID-- 216 (564)
T ss_dssp GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCC------------SCSSCCC------CSHHHHHHHH--
T ss_pred ccceehHHHHHHhccCCChhheeeeEeecCcCchhhccCCccc------------CcCCCCC------chhhHHHHHH--
Confidence 6899999999999999999999999999999999999999877 8999998 9999999998
Q ss_pred ccccccccCCCc---hhhHHHHHHHHHHHHHHhCCC
Q psy1675 81 LYIGLRQRRTTG---QAYDDFIEEFMQAVVARYGQH 113 (179)
Q Consensus 81 ~yig~r~~R~~g---~~y~~f~~~f~~av~~~y~p~ 113 (179)
-++...++++.+ -+||||..+.+..++++|+.+
T Consensus 217 efv~av~~~fG~~~~I~~EDf~~~~af~il~ryr~~ 252 (564)
T 1pj3_A 217 EFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREK 252 (564)
T ss_dssp HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCcEEeehhcCCccHHHHHHHhccC
Confidence 777777777755 499999999999999999754
No 6
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=99.58 E-value=5.7e-17 Score=149.72 Aligned_cols=93 Identities=39% Similarity=0.691 Sum_probs=84.4
Q ss_pred CCccchhhhhhhhcCCCCCCCeeceEEeccCCccccccCCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCc
Q psy1675 1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDP 80 (179)
Q Consensus 1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt~~~~Lg~~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~ 80 (179)
|+||+||++|||+||||+|++|+||+||+||||+.|+.|++++ |++..|+ .|..|++|+|
T Consensus 155 ~~ipvGKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYl------------G~r~~Rv------~g~eyd~fvd-- 214 (555)
T 1gq2_A 155 MGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYI------------GLRHKRI------RGQAYDDLLD-- 214 (555)
T ss_dssp GHHHHHHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCC------------SCSSCCC------CTHHHHHHHH--
T ss_pred cccchhHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccC------------CcCCCCC------chHHHHHHHH--
Confidence 6899999999999999999999999999999999999999877 8999998 9999999998
Q ss_pred ccccccccCC-C--chhhHHHHHHHHHHHHHHhCCC
Q psy1675 81 LYIGLRQRRT-T--GQAYDDFIEEFMQAVVARYGQH 113 (179)
Q Consensus 81 ~yig~r~~R~-~--g~~y~~f~~~f~~av~~~y~p~ 113 (179)
-++...++++ + +-+||||..+.+..++++|+.+
T Consensus 215 efv~av~~~fGp~~~I~~EDf~~~~af~il~ryr~~ 250 (555)
T 1gq2_A 215 EFMEAVTSRYGMNCLIQFEDFANANAFRLLHKYRNK 250 (555)
T ss_dssp HHHHHHHHHHCTTCEEEECSCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhCCCcEEeecccCCccHHHHHHHHhcc
Confidence 6776667676 3 4599999999999999999754
No 7
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=99.51 E-value=7.3e-17 Score=146.85 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=98.2
Q ss_pred eceEEeccCCcccccc----CCCCccccceeeeeeccCCCCCcccceeccCCCCchhcccC-cccc---cccccCCCchh
Q psy1675 23 LPITLDVGTNTQGFSK----PSMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDD-PLYI---GLRQRRTTGQA 94 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~----~gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d-~~yi---g~r~~R~~g~~ 94 (179)
+-+++..||...|||. +||+|+.||++||++||||+ +|||+||+||++ +++| ..++ -...+++.+-+
T Consensus 92 ~VaVVTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d~defve~v~~~~P~fG~In 166 (487)
T 3nv9_A 92 FVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICIDSKNKE--GKNDPDAVIEFVQRIQHTFGAIN 166 (487)
T ss_dssp EEEEEECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBCHHHHHHHHHHHGGGCSEEE
T ss_pred EEEEEEcCceeeeccccccccCCchhhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCCHHHHHHHHHHhCCCCCeec
Confidence 4567788999999655 46999999999999999999 999999999755 3444 2333 23335555669
Q ss_pred hHHHHHHHHHHHHHHhCCC--ceeEeccccccccccccccCCCCCcccch--------------hhHHHHHHHHH
Q psy1675 95 YDDFIEEFMQAVVARYGQH--VLIQTLSDLVTEADLDSGCLYPPPNIIKD--------------CSLKIAAKLVE 153 (179)
Q Consensus 95 y~~f~~~f~~av~~~y~p~--~liqFeD~~vt~~a~~~g~lyppl~~Ir~--------------~sl~IA~~v~~ 153 (179)
||||..+.+..+++||+ + .+.+||||+|+|+.+..+.++.+++..++ +|++||..+..
T Consensus 167 lEDf~ap~af~il~ryr-~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~ 240 (487)
T 3nv9_A 167 LEDISQPNCYKILDVLR-ESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT 240 (487)
T ss_dssp ECSCCTTHHHHHHHHHH-HHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HhhcCCchHHHHHHHHH-hhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999995 5 46789999999999998887776665422 78888888764
No 8
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=99.07 E-value=9.3e-13 Score=117.92 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=90.4
Q ss_pred eceEEeccCCccccccC----CCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHH
Q psy1675 23 LPITLDVGTNTQGFSKP----SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDF 98 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~~----gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f 98 (179)
.-+++..|+...+||.- ||+|..||+.||++||||+ ++||+||+|+ .+|+++ ++-...+.+.+-++|||
T Consensus 67 ~V~VvTdG~~iLGLGD~G~~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~-~dEfv~---~v~~~~p~F~~I~lED~ 139 (398)
T 2a9f_A 67 TVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD-TEEIIS---IVKALAPTFGGINLEDI 139 (398)
T ss_dssp EEEEEECSSSCTTSCCCCHHHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC-HHHHHH---HHHHHGGGCSEEEECSC
T ss_pred EEEEEECCccccCCCCcccccCCcchhCHHHHHHhccCCc---eeeeEeCCCC-HHHHHH---HHHHcCCceeEeccccC
Confidence 34466679999887764 4778889999999999999 9999999997 555543 23333455566688888
Q ss_pred HHHHHHHHHHHhCCCc--eeEeccccccccccccccCCCCCcccc--------------hhhHHHHHHHHH
Q psy1675 99 IEEFMQAVVARYGQHV--LIQTLSDLVTEADLDSGCLYPPPNIIK--------------DCSLKIAAKLVE 153 (179)
Q Consensus 99 ~~~f~~av~~~y~p~~--liqFeD~~vt~~a~~~g~lyppl~~Ir--------------~~sl~IA~~v~~ 153 (179)
..+.+..++++|+ +. +..|+||+|+|+.+..+.++..++..+ .+|+.+|..+..
T Consensus 140 ~~p~~f~il~~~r-~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~ 209 (398)
T 2a9f_A 140 SAPRCFEIEQRLI-KECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLA 209 (398)
T ss_dssp CTTHHHHHHHHHH-HHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhh-hcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHH
Confidence 8888888888885 44 678999999998888766655444321 166676666655
No 9
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=98.84 E-value=5.1e-10 Score=99.94 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=80.3
Q ss_pred eceEEeccCCccccccC----CCCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHH
Q psy1675 23 LPITLDVGTNTQGFSKP----SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDF 98 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~~----gmgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f 98 (179)
.-+++..|+...+||.- ||+|..||+.||++||||+ ++||+||+|+ .+|+++ ++-...+.+.+-+++||
T Consensus 71 ~V~VvTdg~~vLGlGD~G~~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~-~dE~v~---~vk~~~p~f~~i~lED~ 143 (388)
T 1vl6_A 71 TVAVVSDGSAVLGLGNIGPYGALPVMEGKAFLFKAFADID---AFPICLSESE-EEKIIS---IVKSLEPSFGGINLEDI 143 (388)
T ss_dssp EEEEEECSTTBTTTBSCCHHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC-HHHHHH---HHHHTGGGCSEEEECSC
T ss_pred eEEEEECCccccCCCccccccCCcchhCHHHHHHhccCCc---eEeEEeCCCC-HHHHHH---HHHHcCCcceEeCHhhc
Confidence 34456679988887764 4778889999999999999 9999999997 555543 22233344455688888
Q ss_pred HHHHHHHHHHHhCCC-ceeEeccccccccccccccCCCCCc
Q psy1675 99 IEEFMQAVVARYGQH-VLIQTLSDLVTEADLDSGCLYPPPN 138 (179)
Q Consensus 99 ~~~f~~av~~~y~p~-~liqFeD~~vt~~a~~~g~lyppl~ 138 (179)
..+.+..+.++|+.+ .+..|+||+++++.+..+.++..++
T Consensus 144 ~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~ 184 (388)
T 1vl6_A 144 GAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALK 184 (388)
T ss_dssp CTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHH
Confidence 888888888888522 2677889999988877666544333
No 10
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=98.30 E-value=4.9e-09 Score=93.59 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=25.1
Q ss_pred CCccchhhhhhhhcCCCCCCCeeceEEeccC
Q psy1675 1 MGIPVGKLSLYTALAGIKPHQCLPITLDVGT 31 (179)
Q Consensus 1 ~~i~~~kl~l~t~~~gi~p~~~lpi~ldvGt 31 (179)
|+|+.||+.||+.||||+ |+||+||+|+
T Consensus 93 ~pI~egK~~Lf~~~agid---~~pi~ldv~~ 120 (388)
T 1vl6_A 93 LPVMEGKAFLFKAFADID---AFPICLSESE 120 (388)
T ss_dssp HHHHHHHHHHHHHHHCCE---EEEEECSCCC
T ss_pred CcchhCHHHHHHhccCCc---eEeEEeCCCC
Confidence 356779999999999999 9999999997
No 11
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=97.43 E-value=1.8e-05 Score=72.26 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=38.1
Q ss_pred ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhCccccC
Q psy1675 121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKV 164 (179)
Q Consensus 121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~~ 164 (179)
+.++++.+..+.+||++.+ ++++..||..|+++|+++|+|+.-
T Consensus 392 ~~v~~~~l~~~~i~P~~~d-~~Vs~~VA~AVa~aA~~~GvA~~~ 434 (487)
T 3nv9_A 392 EFAEKRGINPDNIIGTMDE-PGIFPKEAADVAMQAIKDGVARVT 434 (487)
T ss_dssp HHHHHTCCBTTBCSCCTTC-TTHHHHHHHHHHHHHHHHTCCSCC
T ss_pred hhCCcccCCCCceeCCccc-cchHHHHHHHHHHHHHHhCCCCCC
Confidence 5667778889999999999 589999999999999999998754
No 12
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=97.19 E-value=3.2e-06 Score=76.40 Aligned_cols=105 Identities=15% Similarity=0.248 Sum_probs=79.2
Q ss_pred eceEEeccCCccccccCC----CCccccceeeeeeccCCCCCcccceeccCCCCchhcccCcccccccccCCCchhhHHH
Q psy1675 23 LPITLDVGTNTQGFSKPS----MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDF 98 (179)
Q Consensus 23 lpi~ldvGt~~~~Lg~~g----mgI~~gKl~Ly~a~~Gi~P~~~lpv~ld~Gt~n~elL~d~~yig~r~~R~~g~~y~~f 98 (179)
.-+++..||...+||.-| +.+..+|+.||+.+||++ ++|+.+|+ ++.++|.+ ..-+.+ ..+.|-++|||
T Consensus 65 ~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid---~~yi~ldv-~d~de~~~--~v~~l~-~~f~GinvED~ 137 (439)
T 2dvm_A 65 LVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVD---AFPIMIKE-QEPNKFID--IVKAIA-PTFGGINLEDI 137 (439)
T ss_dssp EEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCE---EEEEECSC-CSHHHHHH--HHHHTG-GGCSEEEECSC
T ss_pred EEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCC---Ceeeeeec-CCHHHHHH--HHHHhC-ccCcEEEEEeC
Confidence 445677788888866644 677779999999999997 89999998 45566665 444444 45678899999
Q ss_pred HHHHHHHHHHHhCC--CceeEeccccccccccccccCCC
Q psy1675 99 IEEFMQAVVARYGQ--HVLIQTLSDLVTEADLDSGCLYP 135 (179)
Q Consensus 99 ~~~f~~av~~~y~p--~~liqFeD~~vt~~a~~~g~lyp 135 (179)
-.++.+.+.+++.+ |+ +.|+||++++++.+..-+..
T Consensus 138 T~P~k~~il~~l~~avNt-~vf~dD~~gtgntd~aG~~~ 175 (439)
T 2dvm_A 138 ASPKCFYILERLREELDI-PVFHDDQQGTAAVVLAGLLN 175 (439)
T ss_dssp CTTHHHHHHHHHHHHCSS-CEEEHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCE-EEEeCCCcEEeehHHHHHHH
Confidence 99999999999953 33 66999999988666444433
No 13
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=95.62 E-value=0.0019 Score=57.74 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=31.6
Q ss_pred ccccccccccccCCCCCcccchhhHHHHHHHHHHHHHhC
Q psy1675 121 DLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDG 159 (179)
Q Consensus 121 ~~vt~~a~~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~g 159 (179)
+.++++.+..+.+||++.+ ++++..+|..|+++|++..
T Consensus 354 ~~~~~~~~~~~~i~P~~~~-~~v~~~VA~aVa~~A~~~~ 391 (398)
T 2a9f_A 354 SLVPDDALSTTNIIPDAFK-EGVAEIVAKSVRSVVLKSE 391 (398)
T ss_dssp HTCSSCSSCCSCCSCSSTT-HHHHHHHTTTTCCCCC---
T ss_pred hcCCcccCCCCccCCCCCc-chhHHHHHHHHHHHHHHhC
Confidence 5677778889999999999 9999999999999888653
No 14
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=92.16 E-value=0.11 Score=46.66 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.2
Q ss_pred ccccCCCCCcccchhhHHHHHHHHHHHHHhCccccCCccc
Q psy1675 129 DSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTAT 168 (179)
Q Consensus 129 ~~g~lyppl~~Ir~~sl~IA~~v~~~ay~~gla~~~~~~~ 168 (179)
..+.+||++.+ ++++..+|..|+++|+++|+|+....|+
T Consensus 367 ~~~~i~P~~~~-~~v~~~va~av~~~a~~~g~a~~~~~~~ 405 (439)
T 2dvm_A 367 SEENIIPSPLN-PIVYAREARAVAEEAMKEGVARTKVKGE 405 (439)
T ss_dssp BTTBCSCCTTC-HHHHHHHHHHHHHHHHHHTCCSSCCCHH
T ss_pred cCCccCCCccc-chhhHHHHHHHHHHHHHhCCCCCCCChH
Confidence 67889999999 9999999999999999999987544343
Done!