RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1675
(179 letters)
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 148 bits (376), Expect = 1e-42
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
MGIPVGKL LYTA AGI+P +CLP+ +DVGT+ LL DP Y+GL Q+R Q YDD I+
Sbjct: 157 MGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLID 216
Query: 101 EFMQAVVARYGQHVLIQ 117
EFM+A+ RYG++ LIQ
Sbjct: 217 EFMKAITDRYGRNTLIQ 233
Score = 57.0 bits (138), Expect = 3e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKV 164
+ L+ +T+ +L G LYPP I++ S+ IA K+ E + + A +
Sbjct: 476 KALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRY 523
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 147 bits (374), Expect = 1e-42
Identities = 53/77 (68%), Positives = 64/77 (83%)
Query: 41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
MGIPVGKL+LYTA G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R GQAYDD ++
Sbjct: 155 MGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLD 214
Query: 101 EFMQAVVARYGQHVLIQ 117
EFM+AV +RYG + LIQ
Sbjct: 215 EFMEAVTSRYGMNCLIQ 231
Score = 57.0 bits (138), Expect = 3e-10
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
+ ++ V+E +L G LYPP I+ SLKIA ++ ++A+++ TA+
Sbjct: 471 EVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAST 517
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 147 bits (373), Expect = 4e-42
Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 41 MGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE 100
+GIPVGKL+LY AL G++P CLP+ LDVGTN LL+DP YIGLR +R G+ YD ++
Sbjct: 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLD 252
Query: 101 EFMQAVVARYGQHVLIQ 117
FM+A +YGQ LIQ
Sbjct: 253 NFMKACTKKYGQKTLIQ 269
Score = 56.7 bits (137), Expect = 5e-10
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTAT 162
+ ++ VTE L G +YP I++ S++IA ++ + +K+GTA
Sbjct: 508 KKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTAN 553
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 6e-04
Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 83/188 (44%)
Query: 32 NTQGFSKPSM---------------GIPVGKL----SL--YTAL---AGIKPHQCLPITL 67
TQ P++ IP SL Y AL A + +
Sbjct: 1731 FTQ----PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-----MS--- 1778
Query: 68 DVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEF--------MQAVV-ARYGQHVLIQT 118
++ + + + R G + M A+ R +
Sbjct: 1779 ---------IESLVEV-VFYR---GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 119 LSDLVTEADLDSGCL-----Y--PPPNIIKDCSLKIAAKLVEQAFKDGTATKVGTATLFR 171
L +V +G L Y + + + A ++ T T V
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYV--AAGDLRA--LD------TVTNV------- 1868
Query: 172 LIKFSKIK 179
+ F K++
Sbjct: 1869 -LNFIKLQ 1875
Score = 30.4 bits (68), Expect = 0.33
Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 61/165 (36%)
Query: 9 SL--YTAL---AGIKPHQCLPI--TLDV----GTNTQGFSKPSMGIPVGKL--SLYTALA 55
SL Y AL A + + I ++V G Q +P +L S Y +
Sbjct: 1763 SLGEYAALASLADV-----MSIESLVEVVFYRGMTMQVA------VPRDELGRSNY-GMI 1810
Query: 56 GIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIE------EFMQAVVAR 109
I P + + +Q+ L Y+ R + TG +E E Q V A
Sbjct: 1811 AINPGRV------AASFSQEALQ---YVVERVGKRTGW----LVEIVNYNVENQQYVAA- 1856
Query: 110 YGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQ 154
G + T+++++ N IK + I +L +
Sbjct: 1857 -GDLRALDTVTNVL--------------NFIKLQKIDI-IELQKS 1885
Score = 28.5 bits (63), Expect = 1.5
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 19/47 (40%)
Query: 18 KP---HQCLPITL----------------DVGTNTQGFSKPSMGIPV 45
K ++ LP+ D+ N F+ + IPV
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 26.2 bits (57), Expect = 9.4
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 45/158 (28%)
Query: 2 GIPVGKLSLYTALA---GIKPHQCLPITLDVGTNTQGFSKPSMGIPVGKLSLYTALAGIK 58
I V +L+ Y A G P + +G + S G+ ++ A
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYL-------KGATGHSQGLVT---AVAIAETDSW 289
Query: 59 PHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLIQT 118
+ ++ + +IG+R +
Sbjct: 290 E--------SFFVSVRKAITVLFFIGVRCYEAYPN-----------------------TS 318
Query: 119 LSDLVTEADLDSGCLYPPPNI-IKDCSLKIAAKLVEQA 155
L + E L++ P P + I + + + V +
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.092
Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 42/155 (27%)
Query: 31 TNTQGFSKPSMGIPVGKLSLYTALAGIKPH-------------QCLPITLDVGTN--TQQ 75
+ Q F+K ++ L L AL ++P + LDV + Q
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQC 178
Query: 76 LLDDPLY-IGLRQRRTTG-----------QAYDDFIEEFMQAVVARYGQHVLIQTLSDLV 123
+D ++ + L+ + Q ++ + + H + L L+
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 124 TEADLDSGCLYPPPNIIKD--CSLKIAAKLVEQAF 156
++ CL ++ + K AF
Sbjct: 239 KSKPYEN-CL-----LVLLNVQNAKAW-----NAF 262
Score = 29.4 bits (65), Expect = 0.69
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 91 TGQ---AYDDFIEEFMQAVVARYG-QHVLIQTLSDLVTEADLDSGCLYPPPNIIK----- 141
TG+ Y D + F A V + + V ++++ ++D + + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDH--IIMSKDAVSGTLRL 67
Query: 142 -DCSLKIAAKLVEQAFKDG 159
L ++V++ ++
Sbjct: 68 FWTLLSKQEEMVQKFVEEV 86
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.30
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 15/42 (35%)
Query: 132 CLYPPPNIIKD----------CSLKIAAKLVEQ-----AFKD 158
C PP I++ C L ++ KLV+ F +
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68
>2x8r_A Glycosyl hydrolase; peptidoglycan cleavage,
endo-N-acetylmuramidases, motif; 1.70A {Aspergillus
fumigatus}
Length = 210
Score = 28.2 bits (63), Expect = 1.2
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 61 QCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLI 116
+ LP LD+ N G + +I +F+ + +I
Sbjct: 90 RTLPGMLDIEYNPY---------GATCYGLSHSQMVAWIHDFVNEYHHATSRWPMI 136
>2wag_A Lysozyme, putative; hydrolase, GH25, lysin; 1.40A {Bacillus
anthracis}
Length = 220
Score = 27.7 bits (62), Expect = 1.7
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 63 LPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQAVVARYGQHVLI 116
LP +DV + + + ++ + YG+ V++
Sbjct: 100 LPPVIDVEFYA----------NKKDNPPKREDVTKELSVMIEMLEKHYGKKVIL 143
>1vpr_A Luciferase; beta barrel, fatty acid binding protein, lipocalin, PH
regulation, luminescent protein; 1.80A {Lingulodinium
polyedrum} SCOP: b.60.1.7
Length = 374
Score = 26.3 bits (57), Expect = 5.8
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 51 YTALAGI--------KPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAY 95
YTALAG KP+ L LD L+ LRQR +
Sbjct: 322 YTALAGRDNAPTNLGKPYPTLAKDLDYPKKRDGWLEKNEKEMLRQRNIVSSTF 374
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 25.9 bits (57), Expect = 8.0
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 108 ARYGQHVLIQTLSDLVTEADLDSGCLYPPPNIIKD 142
R+G ++TLS L D+ L I D
Sbjct: 153 MRHG----LETLSQLFVFDDIRDHLLMVRDVNISD 183
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic,
metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1
d.44.1.1
Length = 238
Score = 25.8 bits (57), Expect = 8.4
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 95 YDDFIEEFMQAVVARYG 111
++ F++EF A ++G
Sbjct: 125 FEKFLDEFKAAAATQFG 141
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 25.9 bits (58), Expect = 10.0
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 129 DSGCLYPPPNI-------IKDCSLKIAAKL 151
DS C P + ++ K+A +L
Sbjct: 791 DSACSLPAYTLSQEIQDVMRQQVQKLAFEL 820
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.407
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,732,305
Number of extensions: 157542
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 22
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)