RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1675
         (179 letters)



>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score =  127 bits (320), Expect = 5e-37
 Identities = 44/78 (56%), Positives = 56/78 (71%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            +GIPVGKL+LY AL G++P  CLP+ LDVGTN   LL+DP YIGLR +R  G+ YD  +
Sbjct: 191 GIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLL 250

Query: 100 EEFMQAVVARYGQHVLIQ 117
           + FM+A   +YGQ  LIQ
Sbjct: 251 DNFMKACTKKYGQKTLIQ 268


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score =  124 bits (313), Expect = 3e-36
 Identities = 53/78 (67%), Positives = 64/78 (82%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            MGIPVGKL+LYTA  G+KPHQCLP+ LDVGT+ + LL DPLYIGLR +R  GQAYDD +
Sbjct: 154 GMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLL 213

Query: 100 EEFMQAVVARYGQHVLIQ 117
           +EFM+AV +RYG + LIQ
Sbjct: 214 DEFMEAVTSRYGMNCLIQ 231


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score =  122 bits (308), Expect = 2e-35
 Identities = 47/78 (60%), Positives = 59/78 (75%)

Query: 40  SMGIPVGKLSLYTALAGIKPHQCLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFI 99
            MGIPVGKL LYTA AGI+P +CLP+ +DVGT+   LL DP Y+GL Q+R   Q YDD I
Sbjct: 156 GMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLI 215

Query: 100 EEFMQAVVARYGQHVLIQ 117
           +EFM+A+  RYG++ LIQ
Sbjct: 216 DEFMKAITDRYGRNTLIQ 233


>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATKV 164
           + L+  +T+ +L  G LYPP   I++ S+ IA K+ E  + +  A + 
Sbjct: 217 KALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRY 264


>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 298

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
           + ++  V+E +L  G LYPP   I+  SLKIA ++ ++A+++ TA+ 
Sbjct: 214 EVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTAST 260


>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 308

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 15/47 (31%), Positives = 28/47 (59%)

Query: 117 QTLSDLVTEADLDSGCLYPPPNIIKDCSLKIAAKLVEQAFKDGTATK 163
           + ++  VTE  L  G +YP    I++ S++IA ++ +  +K+GTA  
Sbjct: 213 KKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANL 259


>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 167

 Score = 24.5 bits (53), Expect = 6.5
 Identities = 10/43 (23%), Positives = 14/43 (32%)

Query: 62  CLPITLDVGTNTQQLLDDPLYIGLRQRRTTGQAYDDFIEEFMQ 104
            +PITLDV       +     I L Q      A     + +  
Sbjct: 80  TIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKP 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,265
Number of extensions: 27821
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 10
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)