BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16753
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 60 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ 119
TV+E ++ + K++ N + E LLK LG++ + +N LSGGE +RVA+A
Sbjct: 363 TVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNELSGGELQRVAIAAT 415
Query: 120 VSQD 123
+ +D
Sbjct: 416 LLRD 419
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 48 FVPQHD----LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKE----LGLLKCK 99
FVP D + + ++ HMT+ + L V R + +D ++E LGL +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR-QEIDQRVREVAELLGLTELL 133
Query: 100 NSVLNVLSGGERKRVALA 117
N LSGG+R+RVAL
Sbjct: 134 NRKPRELSGGQRQRVALG 151
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 35.0 bits (79), Expect = 0.017, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 36 EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 95
+VE +L V + PQ+ TV+E ++ + K++ N + E LLK LG+
Sbjct: 412 KVEWDLTV---AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGI 461
Query: 96 LKCKNSVLNVLSGGERKRVALAVQVSQD 123
+ + + LSGGE +RVA+A + +D
Sbjct: 462 IDLYDRNVEDLSGGELQRVAIAATLLRD 489
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 35.0 bits (79), Expect = 0.017, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 36 EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL 95
+VE +L V + PQ+ TV+E ++ + K++ N + E LLK LG+
Sbjct: 398 KVEWDLTV---AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGI 447
Query: 96 LKCKNSVLNVLSGGERKRVALAVQVSQD 123
+ + + LSGGE +RVA+A + +D
Sbjct: 448 IDLYDRNVEDLSGGELQRVAIAATLLRD 475
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 24 SDVDGQILLNGLEV----EKNLMV---KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN 76
+ +G++ L G EV EK L + + GFV Q + LT E++ ++ LKM +
Sbjct: 55 APTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKP 113
Query: 77 LHHV-ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
ER + LL ELGL + LSGGE++RVA+A ++ +
Sbjct: 114 KKEAKERG---EYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE 158
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
VDGQ L E E + G + QH + + TV ++ L L++D N E R
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELD-NTPKDEVKRR 120
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V LL +GL +S + LSGG+++RVA+A
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
VDGQ L E E + G + QH + + TV ++ L L++D N E R
Sbjct: 87 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELD-NTPKDEVKRR 143
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V LL +GL +S + LSGG+++RVA+A
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
VDGQ L E E + G + QH + + TV ++ L L++D N E R
Sbjct: 87 VDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP--LELD-NTPKDEVKRR 143
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V LL +GL +S + LSGG+++RVA+A
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 18 RVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKM 73
++++ D +G I + G V K N + + G VPQ DT+ +E + + K+
Sbjct: 64 KLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ-----DTILFNETIKYNILYGKL 118
Query: 74 DRNLHHVERARTVDALLKEL--GLLKCKNSVLN----VLSGGERKRVALAVQVSQDCSRV 127
D V +A T A L + L K ++++ LSGGER+R+A+A + +D V
Sbjct: 119 DATDEEVIKA-TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIV 177
Query: 128 V 128
+
Sbjct: 178 I 178
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 28 GQILLNGLEVEKNLMVKVSG--FVPQHDLTV----DTLTVHEHMTLMARLKMDRNLHHVE 81
GQI +E NL+ FVP + V + ++ H T+ + L V
Sbjct: 61 GQIY-----IEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVP 115
Query: 82 RARTVDALLKE----LGLLKCKNSVLNVLSGGERKRVALA 117
+ + +D ++E LGL + N LSGG+R+RVAL
Sbjct: 116 K-QEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALG 154
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 28 GQILLNGLEVEKNLMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G++ LNG ++ + GFVPQ L+V+ ++ R N+ VER R V
Sbjct: 53 GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRV 107
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ ++LG+ + LSGGER+RVALA
Sbjct: 108 REMAEKLGIAHLLDRKPARLSGGERQRVALA 138
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 18 RVVHELSDVD-GQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
R ++ L D D G+I+++G+ ++ N + + G V Q +TV ++TL A +
Sbjct: 47 RCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APM 105
Query: 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
K+ + A+ ++ LL ++GL ++ + LSGG+ +RVA+A
Sbjct: 106 KVRKWPREKAEAKAME-LLDKVGLKDKAHAYPDSLSGGQAQRVAIA 150
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 18 RVVHELSDVD-GQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
R ++ L D D G+I+++G+ ++ N + + G V Q +TV ++TL A +
Sbjct: 68 RCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APM 126
Query: 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
K+ + A+ ++ LL ++GL ++ + LSGG+ +RVA+A
Sbjct: 127 KVRKWPREKAEAKAME-LLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQH 52
G I+L+G +E ++M+ VPQH
Sbjct: 112 GSIVLDGAIIEDDVMIGAGSLVPQH 136
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 44 KVSGFVPQH---DLTVDTLTVHEHMTLMARLKM---DRNLHHVERARTVDALLKELGLLK 97
+V+ PQ L + +HMT+ + ++ + E V LL+ + L
Sbjct: 78 RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES 137
Query: 98 CKNSVLNVLSGGERKRVALA 117
N + LSGG+++RVALA
Sbjct: 138 YANRFPHELSGGQQQRVALA 157
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 54 LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGG 109
L ++ HMT+ + L R +D ++E+ + + +LN LSGG
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPR-EEIDKKVREVAKMLHIDKLLNRYPWQLSGG 137
Query: 110 ERKRVALA 117
+++RVA+A
Sbjct: 138 QQQRVAIA 145
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQ-HDLTV--DTLTVHEHMTLMARLKMDRNLHHVERAR 84
G+ILL+G +V + P+ HD+ ++ HM + L+ + ++ +
Sbjct: 55 GRILLDGKDV--------TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106
Query: 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V ++L + + LSGGE++RVALA
Sbjct: 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 47 GFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV 105
G V Q LT E++ + +KM + E + V+ + K L + N
Sbjct: 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKE----EIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 106 LSGGERKRVALAVQVSQDCS 125
LSGG+++RVALA + +D S
Sbjct: 141 LSGGQQQRVALARALVKDPS 160
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNV 105
GFV Q + LT E++ L K + ER + LK L + N N
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 106 LSGGERKRVALAVQVSQDCSRVVKITDSQPRG 137
LSGG+++RVA+A ++ + ++ QP G
Sbjct: 146 LSGGQQQRVAIARALANNPPIILA---DQPTG 174
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNV 105
GFV Q + LT E++ L K + ER + LK L + N N
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 106 LSGGERKRVALA 117
LSGG+++RVA+A
Sbjct: 146 LSGGQQQRVAIA 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,052,508
Number of Sequences: 62578
Number of extensions: 135138
Number of successful extensions: 499
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 28
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)