Query psy16753
Match_columns 156
No_of_seqs 119 out of 1773
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:07:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.1E-32 4.5E-37 202.5 11.0 126 9-142 42-171 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 1.5E-32 3.3E-37 207.4 10.0 132 10-154 44-193 (248)
3 COG1125 OpuBA ABC-type proline 100.0 4.9E-32 1.1E-36 204.8 9.4 124 10-142 42-170 (309)
4 COG3839 MalK ABC-type sugar tr 100.0 1.9E-31 4E-36 210.9 10.9 137 9-154 43-197 (338)
5 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-30 2.6E-35 195.8 10.2 126 10-143 49-181 (263)
6 COG3842 PotA ABC-type spermidi 100.0 8.9E-31 1.9E-35 208.0 9.7 125 9-141 45-170 (352)
7 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-30 3.7E-35 200.7 9.2 126 9-141 42-171 (345)
8 COG1135 AbcC ABC-type metal io 100.0 5.6E-30 1.2E-34 198.1 10.4 127 9-144 46-178 (339)
9 COG2884 FtsE Predicted ATPase 100.0 1.1E-29 2.3E-34 184.8 10.9 126 10-144 43-174 (223)
10 COG1136 SalX ABC-type antimicr 100.0 2.5E-29 5.3E-34 189.1 12.6 126 9-143 45-178 (226)
11 COG1131 CcmA ABC-type multidru 100.0 1.7E-29 3.7E-34 198.2 12.2 125 9-142 45-171 (293)
12 COG1137 YhbG ABC-type (unclass 100.0 1E-30 2.3E-35 191.5 4.2 130 11-147 46-179 (243)
13 COG4175 ProV ABC-type proline/ 100.0 1.8E-29 3.9E-34 195.8 7.1 127 10-141 65-198 (386)
14 COG3638 ABC-type phosphate/pho 100.0 3.8E-29 8.2E-34 187.2 7.9 131 9-145 44-185 (258)
15 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-28 4.2E-33 186.7 10.2 132 9-146 44-178 (254)
16 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-28 2.8E-33 180.7 8.5 127 9-144 42-170 (245)
17 PRK11650 ugpC glycerol-3-phosp 100.0 5.8E-28 1.3E-32 194.0 12.3 125 9-142 44-169 (356)
18 TIGR01186 proV glycine betaine 100.0 1.3E-27 2.7E-32 192.2 13.0 125 9-142 33-164 (363)
19 PRK11432 fbpC ferric transport 100.0 1.5E-27 3.3E-32 191.2 13.0 125 9-142 46-171 (351)
20 TIGR02314 ABC_MetN D-methionin 99.9 1.7E-27 3.6E-32 190.4 12.9 127 9-144 45-177 (343)
21 PRK13537 nodulation ABC transp 99.9 1.7E-27 3.7E-32 187.9 12.7 127 9-144 47-175 (306)
22 TIGR03265 PhnT2 putative 2-ami 99.9 1.9E-27 4E-32 190.9 12.9 124 9-141 44-168 (353)
23 TIGR03258 PhnT 2-aminoethylpho 99.9 2.7E-27 5.9E-32 190.4 12.8 124 9-141 45-171 (362)
24 COG1117 PstB ABC-type phosphat 99.9 2.1E-27 4.5E-32 175.8 10.6 131 10-146 48-188 (253)
25 TIGR01188 drrA daunorubicin re 99.9 3.5E-27 7.6E-32 185.8 12.3 126 9-143 33-160 (302)
26 PRK11607 potG putrescine trans 99.9 4.3E-27 9.3E-32 190.2 12.9 126 9-143 59-185 (377)
27 TIGR00960 3a0501s02 Type II (G 99.9 3.9E-27 8.4E-32 177.0 11.7 126 9-143 43-174 (216)
28 PRK09452 potA putrescine/sperm 99.9 6.1E-27 1.3E-31 189.1 12.5 124 9-141 54-178 (375)
29 COG1120 FepC ABC-type cobalami 99.9 1.2E-27 2.7E-32 183.0 7.8 132 9-146 42-177 (258)
30 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 7.7E-27 1.7E-31 175.5 12.0 126 9-143 44-176 (218)
31 cd03261 ABC_Org_Solvent_Resist 99.9 1.1E-26 2.4E-31 176.7 12.6 127 9-143 40-172 (235)
32 cd03259 ABC_Carb_Solutes_like 99.9 1.1E-26 2.3E-31 174.3 12.2 126 9-143 40-166 (213)
33 PRK13536 nodulation factor exp 99.9 1.2E-26 2.6E-31 185.4 13.0 126 9-143 81-208 (340)
34 PRK10851 sulfate/thiosulfate t 99.9 9.7E-27 2.1E-31 186.8 12.5 129 9-143 42-172 (353)
35 COG1122 CbiO ABC-type cobalt t 99.9 3.4E-27 7.4E-32 179.5 8.9 126 10-144 45-175 (235)
36 PRK11629 lolD lipoprotein tran 99.9 1.9E-26 4.1E-31 175.3 13.0 127 9-144 49-182 (233)
37 PRK11000 maltose/maltodextrin 99.9 1.3E-26 2.9E-31 187.0 12.8 125 9-142 43-168 (369)
38 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.1E-26 4.5E-31 173.6 13.0 124 9-143 44-167 (220)
39 COG4525 TauB ABC-type taurine 99.9 7.3E-27 1.6E-31 171.1 9.9 122 9-141 45-166 (259)
40 TIGR03522 GldA_ABC_ATP gliding 99.9 2E-26 4.3E-31 181.4 12.9 126 9-143 42-169 (301)
41 COG3840 ThiQ ABC-type thiamine 99.9 3.3E-27 7.2E-32 171.1 7.3 124 9-141 39-163 (231)
42 cd03266 ABC_NatA_sodium_export 99.9 2E-26 4.4E-31 173.2 11.8 126 9-143 45-172 (218)
43 cd03265 ABC_DrrA DrrA is the A 99.9 2.7E-26 5.9E-31 172.9 12.3 126 9-143 40-167 (220)
44 TIGR01187 potA spermidine/putr 99.9 3.2E-26 7E-31 182.0 12.9 125 9-142 10-135 (325)
45 PRK11153 metN DL-methionine tr 99.9 3.4E-26 7.3E-31 183.1 13.1 126 9-143 45-176 (343)
46 PRK10070 glycine betaine trans 99.9 3.6E-26 7.8E-31 185.8 13.3 126 9-143 68-200 (400)
47 TIGR01288 nodI ATP-binding ABC 99.9 3.3E-26 7.2E-31 180.3 12.7 126 9-143 44-171 (303)
48 TIGR02673 FtsE cell division A 99.9 3.6E-26 7.8E-31 171.4 12.2 127 9-144 42-174 (214)
49 cd03301 ABC_MalK_N The N-termi 99.9 4.3E-26 9.2E-31 170.9 12.5 127 9-144 40-167 (213)
50 cd03292 ABC_FtsE_transporter F 99.9 3.2E-26 7E-31 171.6 11.8 126 9-143 41-172 (214)
51 TIGR02211 LolD_lipo_ex lipopro 99.9 4.7E-26 1E-30 171.6 12.4 126 9-143 45-177 (221)
52 cd03269 ABC_putative_ATPase Th 99.9 3.2E-26 6.9E-31 171.4 11.3 125 9-143 40-164 (210)
53 cd03264 ABC_drug_resistance_li 99.9 3.2E-26 6.8E-31 171.5 11.3 126 9-143 39-166 (211)
54 cd03263 ABC_subfamily_A The AB 99.9 6.4E-26 1.4E-30 170.8 12.1 126 9-143 42-169 (220)
55 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.1E-25 2.3E-30 174.7 13.1 126 9-143 64-196 (269)
56 cd03218 ABC_YhbG The ABC trans 99.9 1.1E-25 2.4E-30 170.7 12.6 126 9-143 40-169 (232)
57 TIGR01166 cbiO cobalt transpor 99.9 1E-25 2.2E-30 166.3 12.0 127 9-144 32-164 (190)
58 cd03219 ABC_Mj1267_LivG_branch 99.9 1.1E-25 2.4E-30 171.1 12.5 128 10-143 41-179 (236)
59 cd03262 ABC_HisP_GlnQ_permease 99.9 8.4E-26 1.8E-30 169.3 11.7 127 9-143 40-171 (213)
60 cd03226 ABC_cobalt_CbiO_domain 99.9 4.6E-26 1E-30 170.0 10.0 122 9-143 40-162 (205)
61 cd03258 ABC_MetN_methionine_tr 99.9 1.1E-25 2.3E-30 171.0 12.2 126 9-143 45-176 (233)
62 COG4148 ModC ABC-type molybdat 99.9 8.8E-27 1.9E-31 178.4 6.2 118 9-141 38-162 (352)
63 cd03225 ABC_cobalt_CbiO_domain 99.9 1.1E-25 2.3E-30 168.6 11.8 126 9-143 41-170 (211)
64 TIGR03608 L_ocin_972_ABC putat 99.9 1.3E-25 2.9E-30 167.4 12.2 126 9-143 38-170 (206)
65 cd03296 ABC_CysA_sulfate_impor 99.9 1.3E-25 2.8E-30 171.2 12.4 129 9-143 42-172 (239)
66 PRK10908 cell division protein 99.9 1.5E-25 3.2E-30 169.2 12.3 125 9-142 42-172 (222)
67 PRK10584 putative ABC transpor 99.9 2E-25 4.4E-30 168.9 12.7 127 9-144 50-183 (228)
68 TIGR02142 modC_ABC molybdenum 99.9 1.6E-25 3.5E-30 179.8 12.4 123 9-142 37-166 (354)
69 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2E-25 4.4E-30 170.5 12.3 126 9-143 41-171 (242)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.7E-25 6E-30 169.2 12.9 126 9-143 41-168 (236)
71 cd03268 ABC_BcrA_bacitracin_re 99.9 8.3E-26 1.8E-30 168.9 9.8 122 9-143 40-162 (208)
72 PRK11248 tauB taurine transpor 99.9 2.5E-25 5.4E-30 171.5 12.7 124 9-143 41-164 (255)
73 cd03234 ABCG_White The White s 99.9 2.8E-25 6E-30 168.1 12.4 131 10-143 48-179 (226)
74 TIGR03415 ABC_choXWV_ATP choli 99.9 2.1E-25 4.6E-30 180.3 12.5 126 9-143 64-200 (382)
75 cd03297 ABC_ModC_molybdenum_tr 99.9 2.5E-25 5.3E-30 167.1 12.0 124 9-143 37-167 (214)
76 PRK13637 cbiO cobalt transport 99.9 2.3E-25 5.1E-30 174.3 12.4 126 9-143 47-180 (287)
77 cd03256 ABC_PhnC_transporter A 99.9 1.5E-25 3.2E-30 170.8 10.9 129 9-143 41-180 (241)
78 TIGR01277 thiQ thiamine ABC tr 99.9 2.7E-25 5.8E-30 166.9 12.1 127 9-144 38-165 (213)
79 PRK11831 putative ABC transpor 99.9 3.5E-25 7.6E-30 171.8 13.1 128 9-144 47-180 (269)
80 PRK13650 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 174.6 11.1 127 9-144 47-177 (279)
81 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.9E-25 4.2E-30 167.3 11.0 126 9-143 38-164 (211)
82 TIGR01184 ntrCD nitrate transp 99.9 3.9E-25 8.5E-30 167.9 12.8 127 9-144 25-151 (230)
83 PRK15079 oligopeptide ABC tran 99.9 3.3E-25 7.1E-30 176.6 12.9 128 10-144 62-198 (331)
84 PRK09493 glnQ glutamine ABC tr 99.9 3.3E-25 7.1E-30 169.1 12.3 127 9-143 41-172 (240)
85 PRK11264 putative amino-acid A 99.9 3.8E-25 8.3E-30 169.5 12.7 127 9-143 43-180 (250)
86 COG4152 ABC-type uncharacteriz 99.9 1.3E-25 2.8E-30 169.2 9.7 127 10-146 43-169 (300)
87 TIGR02315 ABC_phnC phosphonate 99.9 1.9E-25 4.1E-30 170.5 10.1 129 9-143 42-181 (243)
88 PRK09536 btuD corrinoid ABC tr 99.9 2.5E-25 5.3E-30 181.0 11.3 130 9-144 43-176 (402)
89 PRK11144 modC molybdate transp 99.9 3.4E-25 7.5E-30 177.8 12.0 119 9-142 38-163 (352)
90 cd03260 ABC_PstB_phosphate_tra 99.9 3.9E-25 8.4E-30 167.3 11.5 130 9-143 40-177 (227)
91 cd03235 ABC_Metallic_Cations A 99.9 2.2E-25 4.8E-30 167.1 9.5 127 9-143 39-168 (213)
92 PRK13635 cbiO cobalt transport 99.9 3.9E-25 8.5E-30 172.4 11.2 127 9-144 47-177 (279)
93 TIGR00972 3a0107s01c2 phosphat 99.9 7.4E-25 1.6E-29 167.8 12.5 126 9-143 41-180 (247)
94 COG4181 Predicted ABC-type tra 99.9 2.5E-25 5.4E-30 160.1 9.0 123 10-141 51-180 (228)
95 PRK13647 cbiO cobalt transport 99.9 5.1E-25 1.1E-29 171.4 11.6 125 10-143 46-174 (274)
96 PRK13632 cbiO cobalt transport 99.9 5.2E-25 1.1E-29 171.0 11.4 126 9-143 49-178 (271)
97 COG0410 LivF ABC-type branched 99.9 2.2E-25 4.8E-30 166.6 8.7 123 9-141 43-170 (237)
98 PRK13634 cbiO cobalt transport 99.9 5.6E-25 1.2E-29 172.4 11.4 126 9-143 47-181 (290)
99 TIGR03411 urea_trans_UrtD urea 99.9 9.8E-25 2.1E-29 166.5 12.4 129 9-143 42-179 (242)
100 COG0411 LivG ABC-type branched 99.9 2.2E-25 4.8E-30 167.7 8.6 130 10-145 45-187 (250)
101 PRK13538 cytochrome c biogenes 99.9 5.8E-25 1.2E-29 164.1 10.6 124 9-144 41-166 (204)
102 PRK13646 cbiO cobalt transport 99.9 6.3E-25 1.4E-29 171.8 11.2 126 9-144 47-182 (286)
103 PRK10895 lipopolysaccharide AB 99.9 7.3E-25 1.6E-29 167.2 11.3 128 9-144 43-174 (241)
104 PRK11124 artP arginine transpo 99.9 9.3E-25 2E-29 166.7 11.8 126 9-143 42-177 (242)
105 PRK13641 cbiO cobalt transport 99.9 8.8E-25 1.9E-29 171.0 11.8 126 9-143 47-181 (287)
106 TIGR02982 heterocyst_DevA ABC 99.9 8.2E-25 1.8E-29 164.9 11.2 128 9-144 45-178 (220)
107 cd03224 ABC_TM1139_LivF_branch 99.9 7.6E-25 1.6E-29 165.0 10.9 124 9-143 40-168 (222)
108 PRK10619 histidine/lysine/argi 99.9 1.6E-24 3.6E-29 166.9 12.7 127 9-143 45-188 (257)
109 cd03299 ABC_ModC_like Archeal 99.9 2.4E-24 5.3E-29 164.0 13.1 126 9-143 39-165 (235)
110 COG1124 DppF ABC-type dipeptid 99.9 5.1E-25 1.1E-29 165.7 9.2 121 10-141 48-175 (252)
111 PRK13644 cbiO cobalt transport 99.9 9.6E-25 2.1E-29 169.8 11.1 126 9-143 42-172 (274)
112 PRK13651 cobalt transporter AT 99.9 1.2E-24 2.5E-29 171.7 11.6 126 9-143 47-201 (305)
113 cd03267 ABC_NatA_like Similar 99.9 2.2E-24 4.7E-29 164.4 12.6 126 9-143 61-189 (236)
114 cd03300 ABC_PotA_N PotA is an 99.9 2.9E-24 6.3E-29 163.2 13.0 127 9-144 40-167 (232)
115 PRK10771 thiQ thiamine transpo 99.9 1.1E-24 2.4E-29 165.4 10.6 126 9-143 39-165 (232)
116 PRK13643 cbiO cobalt transport 99.9 1.7E-24 3.8E-29 169.5 11.9 125 9-143 46-180 (288)
117 cd03257 ABC_NikE_OppD_transpor 99.9 2.3E-24 5.1E-29 162.8 12.2 127 9-143 45-181 (228)
118 PRK13549 xylose transporter AT 99.9 1.4E-24 3E-29 181.5 11.9 131 9-143 45-179 (506)
119 TIGR01189 ccmA heme ABC export 99.9 1.5E-24 3.3E-29 161.1 10.8 122 9-143 40-163 (198)
120 PRK11300 livG leucine/isoleuci 99.9 2.2E-24 4.7E-29 165.8 11.9 129 9-143 45-189 (255)
121 TIGR03005 ectoine_ehuA ectoine 99.9 2.6E-24 5.7E-29 165.2 12.3 126 10-143 41-182 (252)
122 PRK13631 cbiO cobalt transport 99.9 1.9E-24 4.2E-29 171.5 11.8 124 10-143 67-212 (320)
123 PRK11022 dppD dipeptide transp 99.9 4.5E-24 9.7E-29 169.8 13.8 131 10-144 48-190 (326)
124 PRK11308 dppF dipeptide transp 99.9 3.6E-24 7.9E-29 170.4 13.2 127 10-144 56-191 (327)
125 PRK13636 cbiO cobalt transport 99.9 2.2E-24 4.7E-29 168.5 11.7 127 9-144 46-178 (283)
126 cd03231 ABC_CcmA_heme_exporter 99.9 1.7E-24 3.6E-29 161.3 10.4 120 9-143 40-161 (201)
127 PRK10762 D-ribose transporter 99.9 1.7E-24 3.8E-29 180.7 11.6 129 9-143 44-177 (501)
128 PRK13633 cobalt transporter AT 99.9 2.3E-24 4.9E-29 168.1 11.5 127 9-144 50-181 (280)
129 PRK11247 ssuB aliphatic sulfon 99.9 1.7E-24 3.8E-29 167.0 10.7 118 9-143 52-169 (257)
130 TIGR02769 nickel_nikE nickel i 99.9 3.9E-24 8.5E-29 165.5 12.7 126 9-142 51-185 (265)
131 TIGR00955 3a01204 The Eye Pigm 99.9 1.5E-24 3.4E-29 185.0 11.2 133 9-144 65-203 (617)
132 PRK13640 cbiO cobalt transport 99.9 2.1E-24 4.5E-29 168.6 11.0 127 9-144 47-180 (282)
133 PRK13642 cbiO cobalt transport 99.9 2.6E-24 5.6E-29 167.6 11.4 127 9-144 47-177 (277)
134 PRK13652 cbiO cobalt transport 99.9 3.8E-24 8.2E-29 166.7 12.2 126 9-143 44-173 (277)
135 TIGR02770 nickel_nikD nickel i 99.9 4.1E-24 8.9E-29 162.2 12.1 129 9-142 26-160 (230)
136 PRK14247 phosphate ABC transpo 99.9 5.8E-24 1.3E-28 163.0 13.0 132 9-143 43-182 (250)
137 PRK13540 cytochrome c biogenes 99.9 2.5E-24 5.4E-29 160.2 10.5 122 9-144 41-164 (200)
138 PRK13548 hmuV hemin importer A 99.9 3.6E-24 7.8E-29 165.2 11.6 126 9-143 42-176 (258)
139 PRK13649 cbiO cobalt transport 99.9 4E-24 8.7E-29 166.6 11.9 125 9-143 47-181 (280)
140 PRK13543 cytochrome c biogenes 99.9 3.6E-24 7.9E-29 160.9 11.2 122 10-143 52-173 (214)
141 PRK13638 cbiO cobalt transport 99.9 3.7E-24 8E-29 166.2 11.5 126 9-143 41-172 (271)
142 PRK10575 iron-hydroxamate tran 99.9 2.6E-24 5.7E-29 166.5 10.4 129 9-143 51-183 (265)
143 PRK13539 cytochrome c biogenes 99.9 3.1E-24 6.7E-29 160.6 10.3 123 9-144 42-164 (207)
144 PRK13648 cbiO cobalt transport 99.9 4.8E-24 1E-28 165.3 11.8 126 9-143 49-178 (269)
145 PRK11231 fecE iron-dicitrate t 99.9 3E-24 6.6E-29 165.2 10.5 129 9-143 42-174 (255)
146 KOG0061|consensus 99.9 3.7E-24 8.1E-29 182.1 11.9 133 9-144 70-207 (613)
147 PRK14241 phosphate transporter 99.9 8.8E-24 1.9E-28 162.9 12.8 132 9-144 44-185 (258)
148 PRK11288 araG L-arabinose tran 99.9 4.2E-24 9.1E-29 178.4 11.9 129 9-143 44-176 (501)
149 TIGR00968 3a0106s01 sulfate AB 99.9 8.1E-24 1.8E-28 161.3 12.4 126 9-143 40-166 (237)
150 PRK14273 phosphate ABC transpo 99.9 7.4E-24 1.6E-28 162.9 12.1 130 9-143 47-186 (254)
151 PRK15093 antimicrobial peptide 99.9 9E-24 1.9E-28 168.3 13.0 134 9-144 47-195 (330)
152 TIGR03410 urea_trans_UrtE urea 99.9 3.8E-24 8.3E-29 162.1 10.3 124 9-144 40-168 (230)
153 PRK14268 phosphate ABC transpo 99.9 8.4E-24 1.8E-28 163.1 12.2 129 9-143 52-190 (258)
154 TIGR03740 galliderm_ABC gallid 99.9 5.4E-24 1.2E-28 160.7 11.0 120 9-142 40-159 (223)
155 PRK13639 cbiO cobalt transport 99.9 6.6E-24 1.4E-28 165.1 11.6 127 9-144 42-174 (275)
156 PRK09984 phosphonate/organopho 99.9 5.5E-24 1.2E-28 164.4 10.9 132 9-143 44-188 (262)
157 PRK14242 phosphate transporter 99.9 1.4E-23 3E-28 161.2 13.0 130 9-143 46-185 (253)
158 TIGR03873 F420-0_ABC_ATP propo 99.9 7.2E-24 1.6E-28 163.2 11.3 129 9-143 41-173 (256)
159 PRK09700 D-allose transporter 99.9 5.3E-24 1.1E-28 178.1 11.4 129 9-143 45-181 (510)
160 PRK14267 phosphate ABC transpo 99.9 1.2E-23 2.6E-28 161.6 12.4 132 9-143 44-185 (253)
161 PRK10253 iron-enterobactin tra 99.9 4.6E-24 9.9E-29 165.1 10.1 129 9-143 47-179 (265)
162 PRK10982 galactose/methyl gala 99.9 6.4E-24 1.4E-28 176.9 11.7 129 9-143 38-170 (491)
163 PRK15112 antimicrobial peptide 99.9 1.2E-23 2.5E-28 163.1 12.2 128 9-144 53-186 (267)
164 PRK10247 putative ABC transpor 99.9 9.8E-24 2.1E-28 159.7 11.4 124 9-144 47-174 (225)
165 TIGR01257 rim_protein retinal- 99.9 7.4E-24 1.6E-28 196.5 12.8 126 9-143 970-1097(2272)
166 PRK14269 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 160.6 12.4 131 9-144 42-179 (246)
167 PRK11614 livF leucine/isoleuci 99.9 6.3E-24 1.4E-28 161.7 10.2 124 9-143 45-173 (237)
168 PRK14256 phosphate ABC transpo 99.9 2.9E-23 6.3E-28 159.4 13.9 131 9-143 44-184 (252)
169 PRK13645 cbiO cobalt transport 99.9 9.3E-24 2E-28 165.3 11.3 127 9-144 51-187 (289)
170 TIGR01978 sufC FeS assembly AT 99.9 2.1E-23 4.6E-28 159.1 13.0 131 9-143 40-180 (243)
171 TIGR02324 CP_lyasePhnL phospho 99.9 1.5E-23 3.3E-28 158.3 12.0 127 9-144 48-186 (224)
172 PRK09473 oppD oligopeptide tra 99.9 2.6E-23 5.5E-28 165.7 13.7 131 10-145 57-199 (330)
173 PLN03211 ABC transporter G-25; 99.9 1.2E-23 2.6E-28 180.4 12.5 130 9-143 108-242 (659)
174 PRK13541 cytochrome c biogenes 99.9 9.6E-24 2.1E-28 156.5 10.3 121 9-144 40-160 (195)
175 COG4619 ABC-type uncharacteriz 99.9 9.5E-25 2.1E-29 156.6 4.6 129 10-146 40-172 (223)
176 PRK10261 glutathione transport 99.9 1.7E-23 3.8E-28 178.7 13.2 127 10-144 365-500 (623)
177 PRK10744 pstB phosphate transp 99.9 2E-23 4.3E-28 161.1 12.3 130 9-143 53-192 (260)
178 TIGR03771 anch_rpt_ABC anchore 99.9 1.2E-23 2.7E-28 159.0 10.7 127 9-143 20-149 (223)
179 TIGR01257 rim_protein retinal- 99.9 1E-23 2.2E-28 195.6 12.2 125 9-142 1979-2105(2272)
180 PRK14235 phosphate transporter 99.9 3.5E-23 7.7E-28 160.4 13.1 131 9-143 59-199 (267)
181 PRK15439 autoinducer 2 ABC tra 99.9 1.2E-23 2.7E-28 176.0 11.1 122 9-143 51-176 (510)
182 PRK14245 phosphate ABC transpo 99.9 3.7E-23 8.1E-28 158.7 12.8 130 9-144 43-183 (250)
183 PRK14250 phosphate ABC transpo 99.9 1.4E-23 3E-28 160.4 10.0 122 9-144 43-168 (241)
184 PRK14260 phosphate ABC transpo 99.9 4.7E-23 1E-27 159.0 12.9 130 9-143 47-186 (259)
185 PRK14244 phosphate ABC transpo 99.9 4.7E-23 1E-27 158.2 12.9 132 9-144 45-186 (251)
186 TIGR02633 xylG D-xylose ABC tr 99.9 2.5E-23 5.5E-28 173.6 12.1 131 9-143 41-177 (500)
187 PRK13549 xylose transporter AT 99.9 3E-23 6.4E-28 173.5 12.5 131 9-144 302-442 (506)
188 PRK09700 D-allose transporter 99.9 1.7E-23 3.8E-28 175.0 11.0 129 9-143 303-445 (510)
189 PRK14274 phosphate ABC transpo 99.9 6.2E-23 1.3E-27 158.2 13.2 130 9-143 52-191 (259)
190 PRK03695 vitamin B12-transport 99.9 2.4E-23 5.1E-28 159.8 10.7 125 9-144 36-170 (248)
191 PRK10418 nikD nickel transport 99.9 6.3E-23 1.4E-27 157.8 12.8 128 9-143 43-176 (254)
192 PRK14240 phosphate transporter 99.9 7E-23 1.5E-27 157.1 13.0 130 9-143 43-182 (250)
193 PRK14270 phosphate ABC transpo 99.9 5.6E-23 1.2E-27 157.8 12.4 130 9-143 44-183 (251)
194 PRK14254 phosphate ABC transpo 99.9 5.7E-23 1.2E-27 160.7 12.4 128 9-143 79-216 (285)
195 TIGR02633 xylG D-xylose ABC tr 99.9 3.6E-23 7.9E-28 172.7 12.0 132 9-145 300-441 (500)
196 PRK14248 phosphate ABC transpo 99.9 7.8E-23 1.7E-27 158.5 12.6 131 9-144 61-201 (268)
197 TIGR03269 met_CoM_red_A2 methy 99.9 5.1E-23 1.1E-27 172.5 12.4 129 9-145 40-206 (520)
198 PRK10762 D-ribose transporter 99.9 5.6E-23 1.2E-27 171.7 12.5 129 9-143 292-431 (501)
199 cd03252 ABCC_Hemolysin The ABC 99.9 8.9E-24 1.9E-28 160.8 7.0 129 9-144 42-175 (237)
200 PRK14259 phosphate ABC transpo 99.9 4.3E-23 9.3E-28 160.1 10.9 129 9-144 53-191 (269)
201 cd03248 ABCC_TAP TAP, the Tran 99.9 5.7E-24 1.2E-28 160.8 5.7 129 9-144 54-187 (226)
202 PRK14237 phosphate transporter 99.9 1.1E-22 2.3E-27 157.7 12.8 130 9-143 60-199 (267)
203 PRK11701 phnK phosphonate C-P 99.9 9.8E-23 2.1E-27 157.1 12.3 127 9-143 46-187 (258)
204 PRK14239 phosphate transporter 99.9 1.1E-22 2.4E-27 156.0 12.4 129 9-143 45-184 (252)
205 PRK14272 phosphate ABC transpo 99.9 1.4E-22 3E-27 155.6 12.8 131 9-143 44-184 (252)
206 PRK14251 phosphate ABC transpo 99.9 1.2E-22 2.6E-27 155.8 12.5 130 9-143 44-183 (251)
207 PRK10419 nikE nickel transport 99.9 1.3E-22 2.8E-27 157.4 12.7 126 10-143 53-187 (268)
208 PRK10261 glutathione transport 99.9 8E-23 1.7E-27 174.7 12.5 126 10-143 57-204 (623)
209 PLN03140 ABC transporter G fam 99.9 5.5E-23 1.2E-27 187.9 12.2 131 9-143 920-1055(1470)
210 PRK14249 phosphate ABC transpo 99.9 1.3E-22 2.8E-27 155.7 12.4 130 9-143 44-183 (251)
211 PRK14275 phosphate ABC transpo 99.9 1.2E-22 2.5E-27 159.0 12.3 130 9-143 79-218 (286)
212 PRK15134 microcin C ABC transp 99.9 9E-23 2E-27 171.4 12.4 128 9-144 326-462 (529)
213 PRK14261 phosphate ABC transpo 99.9 1.7E-22 3.7E-27 155.3 12.7 130 9-143 46-185 (253)
214 cd03251 ABCC_MsbA MsbA is an e 99.9 1.9E-23 4.1E-28 158.6 7.3 128 9-143 42-174 (234)
215 TIGR00956 3a01205 Pleiotropic 99.9 8.6E-23 1.9E-27 186.5 12.9 131 9-143 803-938 (1394)
216 PRK14262 phosphate ABC transpo 99.9 1.7E-22 3.7E-27 154.9 12.4 130 9-143 43-182 (250)
217 cd03245 ABCC_bacteriocin_expor 99.9 2.1E-23 4.6E-28 157.0 7.2 120 9-144 44-177 (220)
218 PRK13547 hmuV hemin importer A 99.9 7.7E-23 1.7E-27 159.0 10.5 129 9-143 41-190 (272)
219 COG0444 DppD ABC-type dipeptid 99.9 6.8E-23 1.5E-27 159.8 10.0 128 11-142 47-188 (316)
220 PRK14238 phosphate transporter 99.9 1.5E-22 3.2E-27 157.2 11.9 131 9-144 64-204 (271)
221 PRK11174 cysteine/glutathione 99.9 2.9E-23 6.3E-28 176.1 8.6 122 10-144 387-522 (588)
222 COG4598 HisP ABC-type histidin 99.9 3E-23 6.6E-28 150.5 7.2 124 10-141 47-186 (256)
223 PRK14266 phosphate ABC transpo 99.9 2.2E-22 4.8E-27 154.3 12.5 130 9-143 43-182 (250)
224 PRK15134 microcin C ABC transp 99.9 1.5E-22 3.2E-27 170.1 12.5 131 9-143 49-192 (529)
225 PRK15439 autoinducer 2 ABC tra 99.9 1.3E-22 2.7E-27 169.9 12.0 131 9-145 303-441 (510)
226 PRK14236 phosphate transporter 99.9 2.7E-22 5.8E-27 155.9 12.8 130 9-143 65-204 (272)
227 PRK14263 phosphate ABC transpo 99.9 2.4E-22 5.2E-27 155.4 12.4 127 9-142 48-184 (261)
228 PRK15056 manganese/iron transp 99.9 9.7E-23 2.1E-27 158.3 10.0 130 9-144 47-179 (272)
229 PRK14271 phosphate ABC transpo 99.9 2.8E-22 6E-27 156.2 12.5 130 9-143 61-199 (276)
230 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-22 2.8E-27 170.1 11.4 126 9-144 324-464 (520)
231 PRK14253 phosphate ABC transpo 99.9 3.5E-22 7.5E-27 153.1 12.6 130 9-143 43-181 (249)
232 PRK11288 araG L-arabinose tran 99.9 1E-22 2.3E-27 170.0 10.4 132 9-146 293-435 (501)
233 cd03254 ABCC_Glucan_exporter_l 99.9 3.4E-23 7.3E-28 156.8 6.8 123 9-143 43-175 (229)
234 PRK14243 phosphate transporter 99.9 2.6E-22 5.6E-27 155.4 11.8 128 9-143 50-187 (264)
235 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.4E-22 3E-27 155.5 10.3 114 9-144 39-152 (246)
236 PRK14255 phosphate ABC transpo 99.9 4.5E-22 9.8E-27 152.7 12.8 131 9-144 45-185 (252)
237 COG4161 ArtP ABC-type arginine 99.9 1.2E-22 2.5E-27 145.4 8.7 125 9-141 42-175 (242)
238 PRK14246 phosphate ABC transpo 99.9 3.9E-22 8.4E-27 153.9 12.2 127 9-143 50-189 (257)
239 TIGR02868 CydC thiol reductant 99.9 3.4E-23 7.3E-28 173.8 6.7 124 10-145 372-508 (529)
240 COG1123 ATPase components of v 99.9 2.5E-22 5.5E-27 166.4 11.7 130 11-144 51-191 (539)
241 PRK14265 phosphate ABC transpo 99.9 3.9E-22 8.4E-27 155.2 12.1 129 9-144 60-198 (274)
242 cd03233 ABC_PDR_domain1 The pl 99.9 2.1E-22 4.5E-27 150.2 10.0 105 9-142 47-153 (202)
243 COG1123 ATPase components of v 99.9 1.6E-22 3.5E-27 167.5 10.2 127 10-144 332-466 (539)
244 COG3845 ABC-type uncharacteriz 99.9 1.6E-22 3.4E-27 164.5 10.0 128 9-142 44-175 (501)
245 cd03253 ABCC_ATM1_transporter 99.9 6.9E-23 1.5E-27 155.7 7.4 123 9-143 41-173 (236)
246 TIGR02323 CP_lyasePhnK phospho 99.9 3.9E-22 8.4E-27 153.2 11.6 127 9-143 43-184 (253)
247 PRK14258 phosphate ABC transpo 99.9 5.9E-22 1.3E-26 153.1 12.5 129 9-143 47-186 (261)
248 TIGR00956 3a01205 Pleiotropic 99.9 2.4E-22 5.1E-27 183.6 11.9 134 9-144 101-246 (1394)
249 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 6.3E-22 1.4E-26 149.8 11.8 116 9-142 62-177 (224)
250 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 7.7E-23 1.7E-27 155.7 6.8 123 9-143 43-175 (238)
251 KOG0059|consensus 99.9 1.2E-22 2.6E-27 179.1 8.6 137 10-155 606-762 (885)
252 PRK14264 phosphate ABC transpo 99.9 7.9E-22 1.7E-26 155.6 12.3 133 9-144 85-237 (305)
253 PRK10535 macrolide transporter 99.9 7.8E-22 1.7E-26 169.2 13.1 128 9-145 48-182 (648)
254 PRK14257 phosphate ABC transpo 99.9 9.5E-22 2.1E-26 156.6 12.5 130 9-144 122-262 (329)
255 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.7E-22 3.6E-27 174.3 8.4 117 10-143 494-624 (686)
256 COG2274 SunT ABC-type bacterio 99.9 1E-22 2.2E-27 175.1 6.8 123 10-144 510-646 (709)
257 CHL00131 ycf16 sulfate ABC tra 99.9 1.5E-21 3.3E-26 149.7 12.6 131 9-143 47-187 (252)
258 cd03290 ABCC_SUR1_N The SUR do 99.9 4.5E-22 9.8E-27 149.8 9.2 119 9-144 41-177 (218)
259 COG1129 MglA ABC-type sugar tr 99.9 8.1E-22 1.8E-26 162.3 11.1 128 9-142 48-180 (500)
260 cd03244 ABCC_MRP_domain2 Domai 99.9 2.8E-22 6.1E-27 151.0 7.6 117 10-143 45-175 (221)
261 cd03213 ABCG_EPDR ABCG transpo 99.9 9.5E-22 2.1E-26 145.8 9.6 97 9-143 49-147 (194)
262 PRK11160 cysteine/glutathione 99.9 3.7E-22 8.1E-27 169.2 8.3 119 10-144 381-512 (574)
263 KOG0058|consensus 99.9 1.7E-22 3.7E-27 170.4 6.0 126 10-143 505-640 (716)
264 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.2E-22 4.7E-27 174.1 6.6 118 10-143 520-651 (710)
265 PRK09580 sufC cysteine desulfu 99.9 1.8E-21 3.9E-26 148.9 10.9 132 9-144 41-182 (248)
266 TIGR01842 type_I_sec_PrtD type 99.9 4.8E-22 1E-26 167.5 8.4 122 10-143 359-490 (544)
267 PRK11176 lipid transporter ATP 99.9 2.3E-22 4.9E-27 170.4 6.4 119 10-143 384-516 (582)
268 PRK14252 phosphate ABC transpo 99.9 2.9E-21 6.2E-26 149.5 11.8 129 9-143 56-197 (265)
269 KOG0055|consensus 99.9 2E-22 4.4E-27 177.9 5.8 128 10-145 390-527 (1228)
270 PRK10790 putative multidrug tr 99.9 5.5E-22 1.2E-26 168.5 8.0 118 10-144 382-513 (592)
271 cd03289 ABCC_CFTR2 The CFTR su 99.9 8.2E-22 1.8E-26 153.5 8.3 117 9-143 44-174 (275)
272 PF00005 ABC_tran: ABC transpo 99.9 1.5E-21 3.2E-26 136.6 8.5 106 9-136 25-137 (137)
273 PRK09544 znuC high-affinity zi 99.9 1.4E-21 3.1E-26 150.3 9.2 111 9-143 44-156 (251)
274 TIGR02857 CydD thiol reductant 99.9 4.9E-22 1.1E-26 166.8 7.1 119 10-144 363-495 (529)
275 cd03230 ABC_DR_subfamily_A Thi 99.9 1.9E-21 4.1E-26 141.7 9.0 90 9-143 40-131 (173)
276 PRK13546 teichoic acids export 99.9 6.4E-21 1.4E-25 147.7 12.5 114 9-141 64-177 (264)
277 COG1132 MdlB ABC-type multidru 99.9 5.6E-22 1.2E-26 167.8 7.0 125 10-142 366-500 (567)
278 TIGR00958 3a01208 Conjugate Tr 99.9 5.1E-22 1.1E-26 171.9 6.8 117 10-142 522-652 (711)
279 PRK10982 galactose/methyl gala 99.9 3.2E-21 6.9E-26 160.7 11.1 130 9-144 288-428 (491)
280 PRK13657 cyclic beta-1,2-gluca 99.9 1E-21 2.2E-26 166.9 8.1 118 10-143 376-507 (588)
281 cd03215 ABC_Carb_Monos_II This 99.9 2.9E-21 6.2E-26 141.9 9.4 94 9-143 40-140 (182)
282 PRK10938 putative molybdenum t 99.9 1.4E-21 3E-26 162.9 8.3 118 9-143 43-171 (490)
283 TIGR01193 bacteriocin_ABC ABC- 99.9 6.1E-22 1.3E-26 171.3 6.4 119 10-143 515-647 (708)
284 TIGR03375 type_I_sec_LssB type 99.9 9.1E-22 2E-26 169.9 7.1 118 10-143 506-637 (694)
285 TIGR02204 MsbA_rel ABC transpo 99.9 1E-21 2.2E-26 166.3 7.0 118 10-143 381-512 (576)
286 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.9E-21 6.2E-26 144.3 8.6 111 9-143 48-161 (207)
287 COG4172 ABC-type uncharacteriz 99.8 4.2E-21 9.1E-26 153.5 9.9 127 13-153 331-466 (534)
288 PRK13409 putative ATPase RIL; 99.8 4E-21 8.8E-26 163.1 10.4 113 9-145 379-491 (590)
289 TIGR02203 MsbA_lipidA lipid A 99.8 1.2E-21 2.6E-26 165.6 7.1 121 9-144 372-506 (571)
290 TIGR01846 type_I_sec_HlyB type 99.8 1.2E-21 2.6E-26 169.2 7.2 118 10-143 498-629 (694)
291 PLN03140 ABC transporter G fam 99.8 2.2E-21 4.7E-26 177.5 9.2 133 9-144 205-373 (1470)
292 cd03288 ABCC_SUR2 The SUR doma 99.8 1.5E-21 3.3E-26 150.5 6.9 127 9-143 61-192 (257)
293 cd03232 ABC_PDR_domain2 The pl 99.8 4.4E-21 9.6E-26 142.0 9.2 97 9-142 47-143 (192)
294 PRK10938 putative molybdenum t 99.8 2.2E-21 4.8E-26 161.6 8.4 130 9-143 300-437 (490)
295 cd03246 ABCC_Protease_Secretio 99.8 3.6E-21 7.7E-26 140.3 8.0 88 9-143 42-132 (173)
296 cd03229 ABC_Class3 This class 99.8 2.9E-21 6.3E-26 141.3 7.5 91 9-142 40-135 (178)
297 COG4133 CcmA ABC-type transpor 99.8 4.2E-21 9.1E-26 139.7 8.0 122 9-142 42-165 (209)
298 cd03250 ABCC_MRP_domain1 Domai 99.8 3.8E-21 8.2E-26 143.4 7.9 109 9-144 45-164 (204)
299 TIGR01192 chvA glucan exporter 99.8 2.6E-21 5.6E-26 164.4 7.9 123 10-144 376-508 (585)
300 COG4172 ABC-type uncharacteriz 99.8 5.4E-21 1.2E-25 152.9 8.7 118 26-153 68-197 (534)
301 PRK10789 putative multidrug tr 99.8 2.4E-21 5.1E-26 164.1 6.7 118 10-143 356-487 (569)
302 PRK13545 tagH teichoic acids e 99.8 1.8E-20 3.9E-25 155.9 11.7 115 9-142 64-178 (549)
303 PRK15064 ABC transporter ATP-b 99.8 1.3E-20 2.8E-25 158.4 10.5 113 9-143 359-474 (530)
304 PTZ00265 multidrug resistance 99.8 2.3E-21 5.1E-26 177.6 6.5 107 26-144 1275-1395(1466)
305 PRK11819 putative ABC transpor 99.8 1.9E-20 4E-25 158.3 11.2 121 9-144 47-200 (556)
306 PRK15064 ABC transporter ATP-b 99.8 1.9E-20 4.1E-25 157.4 11.2 122 9-144 41-192 (530)
307 cd03247 ABCC_cytochrome_bd The 99.8 5.6E-21 1.2E-25 139.8 6.9 91 9-143 42-134 (178)
308 COG1101 PhnK ABC-type uncharac 99.8 8.6E-21 1.9E-25 140.9 7.7 131 10-146 47-187 (263)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.7E-20 5.8E-25 157.2 11.8 121 9-144 45-198 (552)
310 cd03214 ABC_Iron-Siderophores_ 99.8 3.6E-21 7.7E-26 141.1 5.5 92 9-143 39-133 (180)
311 PRK11819 putative ABC transpor 99.8 1.9E-20 4E-25 158.3 10.6 116 9-143 364-481 (556)
312 COG4988 CydD ABC-type transpor 99.8 6E-21 1.3E-25 158.1 7.4 117 10-142 362-491 (559)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.1E-20 4.6E-25 157.8 10.5 117 9-144 362-480 (552)
314 cd03228 ABCC_MRP_Like The MRP 99.8 1.4E-20 3E-25 137.0 7.6 88 9-143 42-132 (171)
315 KOG0055|consensus 99.8 6.5E-21 1.4E-25 168.5 6.5 127 10-146 1027-1165(1228)
316 cd03223 ABCD_peroxisomal_ALDP 99.8 3.4E-20 7.3E-25 134.4 8.3 88 9-144 41-128 (166)
317 COG4674 Uncharacterized ABC-ty 99.8 5.1E-21 1.1E-25 140.3 3.6 128 10-143 46-183 (249)
318 COG4559 ABC-type hemin transpo 99.8 2.8E-20 6.2E-25 137.9 7.5 128 9-141 41-175 (259)
319 KOG0057|consensus 99.8 1.9E-20 4E-25 154.1 7.1 118 10-144 393-524 (591)
320 cd03236 ABC_RNaseL_inhibitor_d 99.8 5.1E-20 1.1E-24 142.0 9.1 120 9-143 40-175 (255)
321 COG4608 AppF ABC-type oligopep 99.8 2.3E-20 4.9E-25 142.9 6.8 99 10-153 50-149 (268)
322 PLN03232 ABC transporter C fam 99.8 1.7E-20 3.7E-25 172.6 6.9 117 10-143 1277-1407(1495)
323 cd03217 ABC_FeS_Assembly ABC-t 99.8 6.2E-20 1.3E-24 136.7 8.4 97 9-143 40-140 (200)
324 PRK10522 multidrug transporter 99.8 5.3E-20 1.2E-24 155.2 8.7 115 10-144 364-486 (547)
325 PLN03130 ABC transporter C fam 99.8 3.6E-20 7.8E-25 171.1 7.8 117 10-143 1280-1410(1622)
326 TIGR00954 3a01203 Peroxysomal 99.8 4.6E-20 1E-24 158.6 7.9 117 10-143 493-618 (659)
327 TIGR01194 cyc_pep_trnsptr cycl 99.8 6.1E-20 1.3E-24 155.2 8.4 118 10-146 383-509 (555)
328 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.3E-19 2.8E-24 141.6 9.5 109 9-144 77-196 (282)
329 COG1119 ModF ABC-type molybden 99.8 3.4E-20 7.4E-25 139.9 5.6 126 10-141 72-205 (257)
330 PRK11147 ABC transporter ATPas 99.8 1.5E-19 3.2E-24 155.0 10.2 116 9-143 359-476 (635)
331 PRK15177 Vi polysaccharide exp 99.8 1.7E-19 3.8E-24 135.6 9.4 113 9-143 27-140 (213)
332 KOG0065|consensus 99.8 3.1E-20 6.8E-25 164.6 6.2 133 9-144 831-967 (1391)
333 PTZ00265 multidrug resistance 99.8 6.8E-20 1.5E-24 168.1 7.4 128 10-144 426-616 (1466)
334 COG4136 ABC-type uncharacteriz 99.8 5.4E-20 1.2E-24 130.2 5.0 125 10-141 43-168 (213)
335 COG4987 CydC ABC-type transpor 99.8 2.7E-20 5.9E-25 152.9 4.0 122 10-143 375-510 (573)
336 COG4604 CeuD ABC-type enteroch 99.8 2.9E-20 6.3E-25 136.6 3.3 124 9-139 41-167 (252)
337 PRK13409 putative ATPase RIL; 99.8 1.4E-19 3.1E-24 153.7 7.5 117 9-143 113-248 (590)
338 PTZ00243 ABC transporter; Prov 99.8 1.9E-19 4.1E-24 166.0 8.3 117 10-143 1351-1482(1560)
339 TIGR00957 MRP_assoc_pro multi 99.8 1.9E-19 4.1E-24 166.0 7.3 116 10-142 1327-1456(1522)
340 PRK10636 putative ABC transpor 99.8 9E-19 2E-23 150.2 10.3 112 9-143 352-466 (638)
341 TIGR01271 CFTR_protein cystic 99.8 7.4E-19 1.6E-23 161.8 9.1 115 10-142 1260-1388(1490)
342 PLN03073 ABC transporter F fam 99.8 2.1E-18 4.5E-23 149.3 10.5 114 9-143 549-663 (718)
343 PRK10636 putative ABC transpor 99.8 5E-18 1.1E-22 145.6 10.7 120 9-143 41-185 (638)
344 COG0396 sufC Cysteine desulfur 99.8 8.8E-18 1.9E-22 125.8 10.6 135 10-146 41-183 (251)
345 COG4586 ABC-type uncharacteriz 99.8 1.6E-18 3.4E-23 132.8 6.7 128 9-145 64-194 (325)
346 cd03216 ABC_Carb_Monos_I This 99.7 2.6E-18 5.5E-23 124.2 6.9 75 9-143 40-118 (163)
347 COG4618 ArpD ABC-type protease 99.7 1.9E-18 4.1E-23 141.3 6.8 121 11-141 374-506 (580)
348 TIGR01271 CFTR_protein cystic 99.7 3.7E-18 8E-23 157.2 8.9 117 10-145 467-586 (1490)
349 COG1129 MglA ABC-type sugar tr 99.7 1.1E-17 2.5E-22 137.9 10.8 125 11-141 301-435 (500)
350 COG4167 SapF ABC-type antimicr 99.7 1.1E-17 2.5E-22 122.0 8.2 124 10-141 54-183 (267)
351 PLN03232 ABC transporter C fam 99.7 5E-18 1.1E-22 156.5 7.5 112 10-143 654-776 (1495)
352 PLN03130 ABC transporter C fam 99.7 7.6E-18 1.7E-22 155.9 8.6 107 10-143 658-776 (1622)
353 PRK11147 ABC transporter ATPas 99.7 2.6E-17 5.7E-22 141.1 11.0 57 83-143 136-192 (635)
354 TIGR00957 MRP_assoc_pro multi 99.7 1.9E-17 4.1E-22 152.9 9.1 107 10-143 679-796 (1522)
355 COG4778 PhnL ABC-type phosphon 99.7 1.5E-17 3.2E-22 120.0 5.8 124 9-141 51-186 (235)
356 PTZ00243 ABC transporter; Prov 99.7 3.7E-17 8.1E-22 151.0 9.4 115 10-142 701-817 (1560)
357 cd03222 ABC_RNaseL_inhibitor T 99.7 4.3E-17 9.3E-22 119.4 7.3 69 9-143 39-107 (177)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 6E-17 1.3E-21 114.9 7.1 68 9-144 40-107 (144)
359 COG0488 Uup ATPase components 99.7 1.5E-16 3.2E-21 133.3 10.2 118 9-141 43-187 (530)
360 KOG0054|consensus 99.7 1.4E-16 3.1E-21 143.5 7.6 105 10-141 562-677 (1381)
361 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.4E-16 5.2E-21 113.0 6.7 75 9-143 39-116 (157)
362 KOG0056|consensus 99.7 3.1E-17 6.8E-22 134.2 2.3 122 10-141 579-708 (790)
363 cd03238 ABC_UvrA The excision 99.6 4E-16 8.8E-21 114.2 7.6 55 88-144 69-126 (176)
364 cd03278 ABC_SMC_barmotin Barmo 99.6 2.3E-16 5E-21 117.4 5.4 107 10-142 37-152 (197)
365 COG5265 ATM1 ABC-type transpor 99.6 6.3E-17 1.4E-21 130.1 2.1 123 10-141 304-433 (497)
366 COG4107 PhnK ABC-type phosphon 99.6 1.6E-15 3.4E-20 110.1 6.9 121 9-141 46-185 (258)
367 KOG0054|consensus 99.6 1.9E-15 4.2E-20 136.3 7.0 116 10-142 1181-1310(1381)
368 KOG0065|consensus 99.6 1.1E-15 2.3E-20 136.2 3.5 135 9-146 155-299 (1391)
369 cd03271 ABC_UvrA_II The excisi 99.6 8.7E-15 1.9E-19 113.2 6.7 85 48-143 120-208 (261)
370 COG0488 Uup ATPase components 99.5 2E-14 4.4E-19 120.6 9.3 112 9-143 362-475 (530)
371 COG3845 ABC-type uncharacteriz 99.5 1.5E-14 3.3E-19 118.2 7.9 130 11-146 300-442 (501)
372 PLN03073 ABC transporter F fam 99.5 6.5E-15 1.4E-19 127.7 5.8 60 82-143 320-380 (718)
373 cd03273 ABC_SMC2_euk Eukaryoti 99.5 1.7E-15 3.6E-20 116.5 1.4 128 10-143 40-206 (251)
374 COG1134 TagH ABC-type polysacc 99.5 6E-14 1.3E-18 106.2 9.0 114 9-140 67-180 (249)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.5 1.6E-14 3.4E-19 110.2 5.7 111 29-143 77-198 (243)
376 COG1245 Predicted ATPase, RNas 99.5 8.1E-14 1.7E-18 113.4 6.0 114 9-146 381-494 (591)
377 cd03270 ABC_UvrA_I The excisio 99.4 2.7E-13 5.8E-18 102.9 6.1 54 87-142 118-174 (226)
378 COG4178 ABC-type uncharacteriz 99.4 5.9E-13 1.3E-17 112.2 6.1 113 9-143 433-551 (604)
379 cd03240 ABC_Rad50 The catalyti 99.4 3.7E-13 8.1E-18 100.6 3.4 111 10-144 37-158 (204)
380 COG4138 BtuD ABC-type cobalami 99.4 9.2E-14 2E-18 100.9 0.2 120 10-142 40-167 (248)
381 KOG0927|consensus 99.3 6.5E-12 1.4E-16 104.0 5.8 109 10-140 431-542 (614)
382 PRK00635 excinuclease ABC subu 99.2 1.6E-11 3.5E-16 113.8 8.0 86 55-143 759-848 (1809)
383 PRK00349 uvrA excinuclease ABC 99.2 2.1E-11 4.6E-16 108.2 7.6 85 56-143 434-527 (943)
384 cd03276 ABC_SMC6_euk Eukaryoti 99.2 1.3E-11 2.9E-16 91.9 5.0 53 84-141 91-147 (198)
385 PRK00349 uvrA excinuclease ABC 99.2 4.3E-11 9.2E-16 106.3 7.8 75 58-143 791-869 (943)
386 TIGR00630 uvra excinuclease AB 99.2 5.8E-11 1.3E-15 105.3 7.7 54 88-143 469-525 (924)
387 COG4170 SapD ABC-type antimicr 99.2 6.6E-12 1.4E-16 93.8 0.9 60 83-144 133-195 (330)
388 TIGR00630 uvra excinuclease AB 99.1 1E-10 2.3E-15 103.7 7.3 76 57-143 788-867 (924)
389 cd03274 ABC_SMC4_euk Eukaryoti 99.1 2E-11 4.3E-16 91.8 2.2 98 44-143 59-167 (212)
390 KOG0060|consensus 99.1 1.1E-10 2.5E-15 97.4 5.8 118 9-140 475-603 (659)
391 KOG0927|consensus 99.1 9.9E-11 2.1E-15 97.1 5.0 60 81-142 196-256 (614)
392 cd03279 ABC_sbcCD SbcCD and ot 99.1 6.8E-11 1.5E-15 88.8 3.6 51 90-142 108-168 (213)
393 KOG0062|consensus 99.1 2.4E-10 5.2E-15 94.3 6.4 110 11-141 406-516 (582)
394 cd03275 ABC_SMC1_euk Eukaryoti 99.0 2.8E-10 6.1E-15 87.3 4.4 56 84-141 112-193 (247)
395 PRK00635 excinuclease ABC subu 99.0 3E-10 6.4E-15 105.6 4.8 55 88-144 458-515 (1809)
396 COG1245 Predicted ATPase, RNas 98.9 1E-09 2.2E-14 89.9 3.4 60 85-146 193-252 (591)
397 KOG0066|consensus 98.8 7.2E-09 1.6E-13 84.9 5.8 108 9-140 627-737 (807)
398 KOG0062|consensus 98.8 5.1E-09 1.1E-13 86.6 5.0 54 86-141 178-232 (582)
399 COG4615 PvdE ABC-type sideroph 98.8 2.5E-09 5.4E-14 86.4 2.3 115 10-141 360-482 (546)
400 cd03277 ABC_SMC5_euk Eukaryoti 98.8 6E-09 1.3E-13 78.5 3.3 43 98-142 119-165 (213)
401 cd03239 ABC_SMC_head The struc 98.7 1.5E-08 3.3E-13 74.2 3.7 36 106-143 95-134 (178)
402 KOG0063|consensus 98.6 4.4E-08 9.6E-13 79.9 5.4 114 9-146 381-495 (592)
403 KOG0064|consensus 98.6 1.8E-08 3.8E-13 84.0 3.0 112 10-141 523-646 (728)
404 PHA02562 46 endonuclease subun 98.6 4.4E-08 9.5E-13 83.0 4.3 49 88-141 454-513 (562)
405 cd03241 ABC_RecN RecN ATPase i 98.6 4.6E-08 1E-12 76.3 3.8 37 104-142 169-209 (276)
406 cd03227 ABC_Class2 ABC-type Cl 98.5 7.6E-08 1.6E-12 69.3 3.1 37 104-142 76-116 (162)
407 TIGR00618 sbcc exonuclease Sbc 98.5 9.5E-08 2.1E-12 86.6 4.3 45 96-142 941-995 (1042)
408 COG0178 UvrA Excinuclease ATPa 98.5 3.5E-07 7.5E-12 79.5 6.8 72 58-140 783-858 (935)
409 PRK10246 exonuclease subunit S 98.4 2E-07 4.3E-12 84.5 4.1 41 100-142 944-992 (1047)
410 TIGR00634 recN DNA repair prot 98.4 1.7E-07 3.7E-12 79.9 3.3 38 104-143 439-480 (563)
411 PRK10869 recombination and rep 98.4 2.6E-07 5.6E-12 78.6 3.5 36 105-142 430-469 (553)
412 TIGR00606 rad50 rad50. This fa 98.4 3.4E-07 7.4E-12 84.7 4.2 39 102-142 1196-1240(1311)
413 PRK01156 chromosome segregatio 98.4 9.2E-07 2E-11 79.0 6.8 40 101-142 797-842 (895)
414 cd03280 ABC_MutS2 MutS2 homolo 98.4 2.4E-07 5.2E-12 68.9 2.6 53 89-144 75-127 (200)
415 KOG0066|consensus 98.4 2.3E-07 5E-12 76.3 2.6 60 83-144 389-449 (807)
416 cd03242 ABC_RecF RecF is a rec 98.3 5.1E-07 1.1E-11 70.2 3.8 38 103-142 181-227 (270)
417 PRK03918 chromosome segregatio 98.3 6.2E-07 1.3E-11 79.8 3.7 40 100-141 783-828 (880)
418 TIGR02168 SMC_prok_B chromosom 98.3 6.4E-07 1.4E-11 81.2 3.5 41 99-141 1083-1127(1179)
419 COG2401 ABC-type ATPase fused 98.2 2.3E-06 5E-11 70.0 5.7 114 10-144 424-544 (593)
420 cd03285 ABC_MSH2_euk MutS2 hom 98.1 1.1E-06 2.4E-11 66.6 1.2 53 86-143 73-130 (222)
421 TIGR02169 SMC_prok_A chromosom 98.1 2.3E-06 4.9E-11 77.8 3.1 40 100-141 1069-1112(1164)
422 TIGR02680 conserved hypothetic 98.0 4.5E-06 9.8E-11 77.5 3.7 43 99-143 1241-1295(1353)
423 PRK00064 recF recombination pr 98.0 3.5E-06 7.5E-11 68.3 2.4 38 102-141 270-316 (361)
424 COG0178 UvrA Excinuclease ATPa 98.0 3.6E-05 7.9E-10 67.3 8.2 52 90-141 465-517 (935)
425 TIGR00611 recf recF protein. A 98.0 5.6E-06 1.2E-10 67.2 3.1 36 104-141 274-318 (365)
426 KOG2355|consensus 97.9 1.4E-05 3.1E-10 60.0 3.8 116 9-143 54-183 (291)
427 smart00534 MUTSac ATPase domai 97.8 1E-05 2.2E-10 59.5 2.5 56 87-145 43-98 (185)
428 PRK14079 recF recombination pr 97.8 1.3E-05 2.8E-10 64.7 3.4 37 104-142 262-307 (349)
429 KOG0063|consensus 97.8 7.7E-06 1.7E-10 67.1 1.8 61 82-144 190-250 (592)
430 cd03283 ABC_MutS-like MutS-lik 97.8 1.3E-05 2.7E-10 59.8 2.6 61 48-143 63-123 (199)
431 PF13558 SbcCD_C: Putative exo 97.7 4.7E-05 1E-09 49.7 3.4 42 100-143 27-81 (90)
432 cd03282 ABC_MSH4_euk MutS4 hom 97.7 1.8E-05 3.9E-10 59.2 1.4 54 86-142 72-125 (204)
433 PTZ00132 GTP-binding nuclear p 97.6 5.1E-05 1.1E-09 56.7 2.7 34 110-145 157-195 (215)
434 PRK02224 chromosome segregatio 97.5 7.9E-05 1.7E-09 66.6 3.3 38 102-141 778-827 (880)
435 PF13304 AAA_21: AAA domain; P 97.5 0.00014 3E-09 54.0 4.0 49 103-151 234-299 (303)
436 cd03243 ABC_MutS_homologs The 97.4 0.00012 2.5E-09 54.5 2.8 50 91-143 77-126 (202)
437 PF02463 SMC_N: RecF/RecN/SMC 97.1 0.00083 1.8E-08 50.3 5.0 50 84-141 121-174 (220)
438 PRK00409 recombination and DNA 97.1 0.00025 5.5E-09 62.8 2.4 50 90-142 375-424 (782)
439 TIGR02858 spore_III_AA stage I 96.9 0.0014 2.9E-08 51.3 4.2 41 9-53 125-169 (270)
440 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.00099 2.2E-08 50.1 3.0 36 104-141 87-124 (213)
441 TIGR01069 mutS2 MutS2 family p 96.6 0.00075 1.6E-08 59.8 1.2 49 92-143 372-420 (771)
442 COG0419 SbcC ATPase involved i 96.1 0.0061 1.3E-07 55.0 3.9 39 101-141 811-857 (908)
443 TIGR03185 DNA_S_dndD DNA sulfu 94.7 0.038 8.2E-07 48.2 4.0 37 102-141 548-590 (650)
444 cd01124 KaiC KaiC is a circadi 94.5 0.04 8.6E-07 39.8 3.2 46 92-139 58-109 (187)
445 COG4637 Predicted ATPase [Gene 94.4 0.046 9.9E-07 43.7 3.5 48 104-151 269-331 (373)
446 cd03284 ABC_MutS1 MutS1 homolo 93.9 0.026 5.7E-07 42.5 1.1 35 105-141 85-128 (216)
447 KOG0933|consensus 92.2 0.057 1.2E-06 48.7 0.8 37 103-147 1080-1120(1174)
448 PRK13695 putative NTPase; Prov 91.7 0.099 2.1E-06 37.7 1.6 38 100-139 73-112 (174)
449 cd03286 ABC_MSH6_euk MutS6 hom 91.6 0.21 4.5E-06 37.8 3.2 33 109-143 95-127 (218)
450 cd00820 PEPCK_HprK Phosphoenol 91.1 0.15 3.2E-06 34.4 1.7 51 10-69 26-79 (107)
451 cd01128 rho_factor Transcripti 90.4 0.12 2.7E-06 39.8 1.0 33 104-140 128-168 (249)
452 PF13175 AAA_15: AAA ATPase do 89.4 0.39 8.5E-06 38.8 3.3 39 101-141 337-385 (415)
453 PF13166 AAA_13: AAA domain 88.4 0.76 1.7E-05 40.4 4.6 38 102-141 497-543 (712)
454 KOG0018|consensus 87.4 0.41 8.9E-06 43.7 2.3 37 102-140 1048-1088(1141)
455 cd03287 ABC_MSH3_euk MutS3 hom 86.3 0.98 2.1E-05 34.2 3.5 30 110-141 97-126 (222)
456 cd01125 repA Hexameric Replica 82.3 0.69 1.5E-05 35.0 1.2 16 119-137 107-122 (239)
457 KOG0964|consensus 82.2 0.4 8.6E-06 43.5 -0.1 38 103-142 1095-1136(1200)
458 PRK06793 fliI flagellum-specif 77.1 2.1 4.6E-05 35.8 2.6 40 102-143 218-264 (432)
459 cd01130 VirB11-like_ATPase Typ 76.0 9.6 0.00021 27.6 5.6 58 10-71 40-99 (186)
460 COG3910 Predicted ATPase [Gene 72.7 3.5 7.7E-05 31.0 2.5 45 98-145 122-166 (233)
461 KOG0996|consensus 72.3 2.3 5E-05 39.5 1.8 35 103-139 1193-1231(1293)
462 COG1196 Smc Chromosome segrega 72.2 3.2 6.8E-05 39.0 2.7 37 103-141 1064-1104(1163)
463 KOG0962|consensus 72.1 3 6.4E-05 39.3 2.4 33 105-139 1183-1221(1294)
464 PRK01889 GTPase RsgA; Reviewed 69.5 14 0.00031 29.9 5.7 44 10-57 210-253 (356)
465 PRK08533 flagellar accessory p 69.2 3.5 7.7E-05 31.2 2.0 32 105-138 95-130 (230)
466 COG0497 RecN ATPase involved i 65.3 8 0.00017 33.4 3.5 34 104-139 430-467 (557)
467 PRK13830 conjugal transfer pro 63.6 2.6 5.6E-05 38.1 0.3 19 121-141 650-669 (818)
468 PRK13891 conjugal transfer pro 62.8 4.4 9.5E-05 36.8 1.6 25 116-142 680-705 (852)
469 PRK06067 flagellar accessory p 61.3 6.6 0.00014 29.5 2.1 33 105-139 100-134 (234)
470 cd02023 UMPK Uridine monophosp 58.4 4 8.7E-05 29.8 0.5 51 85-140 63-113 (198)
471 PF09818 ABC_ATPase: Predicted 45.9 27 0.00059 29.4 3.5 34 104-139 321-354 (448)
472 PRK06315 type III secretion sy 45.4 52 0.0011 27.7 5.1 94 10-107 179-293 (442)
473 PRK05399 DNA mismatch repair p 44.1 34 0.00074 31.3 4.1 38 100-139 661-700 (854)
474 KOG0250|consensus 43.2 9.9 0.00021 35.2 0.6 32 103-139 987-1018(1074)
475 smart00382 AAA ATPases associa 42.7 59 0.0013 20.8 4.3 39 102-142 57-95 (148)
476 COG4913 Uncharacterized protei 42.4 31 0.00068 31.1 3.4 40 104-143 989-1039(1104)
477 cd01131 PilT Pilus retraction 41.6 24 0.00051 25.9 2.3 20 115-136 66-85 (198)
478 COG1195 RecF Recombinational D 41.0 20 0.00044 29.3 2.0 36 104-141 274-318 (363)
479 PRK04863 mukB cell division pr 38.8 19 0.00041 35.0 1.7 40 103-143 1363-1417(1486)
480 COG4694 Uncharacterized protei 37.2 39 0.00085 29.5 3.2 42 100-141 523-571 (758)
481 TIGR02903 spore_lon_C ATP-depe 34.5 38 0.00081 29.7 2.8 41 85-144 243-283 (615)
482 COG1106 Predicted ATPases [Gen 33.4 33 0.00072 28.2 2.1 40 101-141 247-286 (371)
483 cd01120 RecA-like_NTPases RecA 32.8 36 0.00079 23.0 2.1 30 105-136 67-96 (165)
484 PRK13702 replication protein; 31.4 44 0.00095 21.5 2.0 26 103-128 21-48 (85)
485 PRK00454 engB GTP-binding prot 31.0 1.4E+02 0.003 21.1 5.0 51 85-141 126-180 (196)
486 PRK06995 flhF flagellar biosyn 29.3 1.3E+02 0.0028 25.7 5.1 90 45-140 288-381 (484)
487 COG4938 Uncharacterized conser 27.8 30 0.00066 27.7 1.0 31 120-151 256-302 (374)
488 TIGR02655 circ_KaiC circadian 27.8 1.3 2.8E-05 37.5 -7.1 37 90-126 100-138 (484)
489 PF03603 DNA_III_psi: DNA poly 26.9 73 0.0016 22.0 2.7 48 85-139 4-51 (128)
490 COG1715 Mrr Restriction endonu 25.9 86 0.0019 25.1 3.2 60 80-145 23-86 (308)
491 PF00488 MutS_V: MutS domain V 24.6 64 0.0014 24.5 2.3 40 103-144 100-141 (235)
492 PHA02608 67 prohead core prote 22.0 80 0.0017 19.9 1.9 17 107-123 30-46 (80)
493 COG2086 FixA Electron transfer 21.9 1.2E+02 0.0027 23.6 3.4 43 101-143 56-99 (260)
494 COG3050 HolD DNA polymerase II 21.7 57 0.0012 22.5 1.3 47 88-141 6-52 (133)
495 PRK13873 conjugal transfer ATP 21.0 48 0.001 30.0 1.1 18 120-139 632-649 (811)
496 PF11100 TrbE: Conjugal transf 21.0 1.1E+02 0.0024 18.4 2.3 17 5-21 49-65 (66)
497 TIGR03238 dnd_assoc_3 dnd syst 21.0 92 0.002 26.8 2.6 28 10-39 43-71 (504)
498 PRK07196 fliI flagellum-specif 20.5 1.5E+02 0.0033 24.9 3.8 58 10-71 170-239 (434)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=2.1e-32 Score=202.51 Aligned_cols=126 Identities=25% Similarity=0.264 Sum_probs=110.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|+++||.|+..+ ++|+|+++|.++.. ...|+.+|+|||+..+||++|+.||+..+-. .. .+.++.++.+
T Consensus 42 STlLRclN~LE~~----~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~-~v-~~~~k~eA~~ 115 (240)
T COG1126 42 STLLRCLNGLEEP----DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-KV-KKLSKAEARE 115 (240)
T ss_pred HHHHHHHHCCcCC----CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH-HH-cCCCHHHHHH
Confidence 4789999999985 89999999987742 2467889999999999999999999987642 22 2456778888
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++.++++++||.+..|.++.+|||||||||+|||||+.+|++++ +||||++|||-.
T Consensus 116 ~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL--FDEPTSALDPEl 171 (240)
T COG1126 116 KALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML--FDEPTSALDPEL 171 (240)
T ss_pred HHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe--ecCCcccCCHHH
Confidence 99999999999999999999999999999999999999999998 999999999863
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.5e-32 Score=207.36 Aligned_cols=132 Identities=26% Similarity=0.313 Sum_probs=112.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++|+|+|+.. |++|+|.++|.++... ...+|||||+..++|..|+.+|+.++..... ....+..++++++
T Consensus 44 TLLriiAGL~~----p~~G~V~~~g~~v~~p--~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~ 114 (248)
T COG1116 44 TLLRLIAGLEK----PTSGEVLLDGRPVTGP--GPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKEL 114 (248)
T ss_pred HHHHHHhCCCC----CCCceEEECCcccCCC--CCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHH
Confidence 56666666666 5999999999998432 4568999999999999999999998876542 2344556689999
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch------------------hhheeecccc
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI------------------SALFITTASS 151 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~------------------~~~~~~~~~~ 151 (156)
++.+||....++++++|||||||||+|||||+.+|++++ |||||..+|+. +.++|| |+
T Consensus 115 L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL--lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT--Hd 190 (248)
T COG1116 115 LELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL--LDEPFGALDALTREELQDELLRLWEETRKTVLLVT--HD 190 (248)
T ss_pred HHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE--EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe--CC
Confidence 999999999999999999999999999999999999998 99999999975 566777 88
Q ss_pred ccc
Q psy16753 152 VEE 154 (156)
Q Consensus 152 ~~~ 154 (156)
|+|
T Consensus 191 i~E 193 (248)
T COG1116 191 VDE 193 (248)
T ss_pred HHH
Confidence 876
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=4.9e-32 Score=204.84 Aligned_cols=124 Identities=23% Similarity=0.336 Sum_probs=108.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|+||+|.+++. |++|+|+++|+++... ..|+.+||+-|+..+||++|+.||+...-.+. ++++...++++
T Consensus 42 TtLkMINrLie----pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~ 114 (309)
T COG1125 42 TTLKMINRLIE----PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRA 114 (309)
T ss_pred HHHHHHhcccC----CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHH
Confidence 56677777766 5999999999998753 56889999999999999999999998765543 35666777899
Q ss_pred HHHHHHcCCCc--cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLK--CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~--~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++++.++|++ +.++++++|||||||||++||||+.+|++++ +||||.++||++
T Consensus 115 ~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL--MDEPFgALDpI~ 170 (309)
T COG1125 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL--MDEPFGALDPIT 170 (309)
T ss_pred HHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe--ecCCccccChhh
Confidence 99999999975 7899999999999999999999999999998 999999999984
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=210.91 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=120.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|+||+|+|++.| ++|+|+|+|.+++.. +..+.+|+|||+..+||++||++|+.|+...+ .....+..++++
T Consensus 43 STlLr~IAGLe~~----~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~ 115 (338)
T COG3839 43 STLLRMIAGLEEP----TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVK 115 (338)
T ss_pred HHHHHHHhCCCCC----CCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHH
Confidence 3678888888884 999999999999874 55678999999999999999999999987664 234567788999
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch-----------------hhheeeccc
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI-----------------SALFITTAS 150 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~-----------------~~~~~~~~~ 150 (156)
++.+.+++++.+++++.+|||||||||+||||++.+|++++ +|||.+.+|+. .+..|.||+
T Consensus 116 eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L--~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD 193 (338)
T COG3839 116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL--LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193 (338)
T ss_pred HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE--ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 99999999999999999999999999999999999999888 99999999954 355667788
Q ss_pred cccc
Q psy16753 151 SVEE 154 (156)
Q Consensus 151 ~~~~ 154 (156)
|+|+
T Consensus 194 q~EA 197 (338)
T COG3839 194 QVEA 197 (338)
T ss_pred HHHH
Confidence 8875
No 5
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.2e-30 Score=195.77 Aligned_cols=126 Identities=29% Similarity=0.296 Sum_probs=108.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
+++|+|.|++. |++|+|+++|.++... ..++++|++||+..+|..+||+||+.|..+-+. .++.+..+
T Consensus 49 tlLr~I~Gll~----P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~lp~~~i~ 122 (263)
T COG1127 49 TLLRLILGLLR----PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR 122 (263)
T ss_pred HHHHHHhccCC----CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cCCHHHHH
Confidence 56677777777 5899999999998532 356779999999999999999999998765542 45677777
Q ss_pred HHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+..-++.+||... .++++.+|||||++|++||||++.+|++++ +||||+|+||+++
T Consensus 123 ~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~--~DEPtsGLDPI~a 181 (263)
T COG1127 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF--LDEPTSGLDPISA 181 (263)
T ss_pred HHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE--ecCCCCCCCcchH
Confidence 888889999999877 899999999999999999999999999888 9999999999954
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=8.9e-31 Score=208.03 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=110.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|+|++|+|+..| ++|+|.++|++++.. ..++.+|+|||+..+||++||.+|+.|+.... +........+++.
T Consensus 45 TTlLR~IAGfe~p----~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~ 118 (352)
T COG3842 45 TTLLRMIAGFEQP----SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVE 118 (352)
T ss_pred HHHHHHHhCCCCC----CCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHH
Confidence 4789999999995 899999999999864 45778999999999999999999999997633 2223445678999
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|++++ ||||.+++|.-
T Consensus 119 e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL--LDEPlSaLD~k 170 (352)
T COG3842 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL--LDEPLSALDAK 170 (352)
T ss_pred HHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh--hcCcccchhHH
Confidence 99999999999999999999999999999999999999998 99999999943
No 7
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=200.69 Aligned_cols=126 Identities=23% Similarity=0.252 Sum_probs=109.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCE---ecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGL---EVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~---~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++++|+|+..| ++|.|.++|+ |.++. ...+.+||+||+..+|+++||.+|+.|+...+. ...+....+.
T Consensus 42 sTlLRiIAGLe~p----~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~~~~~r~ 116 (345)
T COG1118 42 STLLRIIAGLETP----DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPSEAEIRA 116 (345)
T ss_pred HHHHHHHhCcCCC----CCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCChhhHHH
Confidence 4788999999885 8999999999 66653 335779999999999999999999999876551 2234556778
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++.++++.+.|+...++++.+|||||||||++||||+..|++++ ||||++++|..
T Consensus 117 rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL--LDEPf~ALDa~ 171 (345)
T COG1118 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL--LDEPFGALDAK 171 (345)
T ss_pred HHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe--ecCCchhhhHH
Confidence 89999999999999999999999999999999999999999998 99999999954
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.6e-30 Score=198.07 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=112.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.||++|+.++.. |++|+|.++|.++... ..|+.+|++||++.++...||.+|+.|..... +.++.+.
T Consensus 46 STLiR~iN~Le~----PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei 118 (339)
T COG1135 46 STLLRLINLLER----PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEI 118 (339)
T ss_pred HHHHHHHhccCC----CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHH
Confidence 367788888877 5999999999988642 35788999999999999999999999988765 3456777
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+||.+..+.++.+|||||||||+|||||+.+|++++ .||||+.|||-+|-
T Consensus 119 ~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL--~DEaTSALDP~TT~ 178 (339)
T COG1135 119 KQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILL--CDEATSALDPETTQ 178 (339)
T ss_pred HHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEE--ecCccccCChHHHH
Confidence 8899999999999999999999999999999999999999999998 99999999998653
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.1e-29 Score=184.78 Aligned_cols=126 Identities=25% Similarity=0.276 Sum_probs=110.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
|++|+|++... |++|+|+++|.++++. ..|+++|+|||+..+.+..|+.||+.+..+.. +..+...+
T Consensus 43 TllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~ 115 (223)
T COG2884 43 TLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIR 115 (223)
T ss_pred HHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHH
Confidence 56677777666 5999999999998643 35788999999999999999999999887654 34567788
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.++++.+||.+..+..+.+|||||||||+||||++.+|+++| .||||..+||..+.
T Consensus 116 ~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl--ADEPTGNLDp~~s~ 174 (223)
T COG2884 116 RRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL--ADEPTGNLDPDLSW 174 (223)
T ss_pred HHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe--ecCCCCCCChHHHH
Confidence 899999999999999999999999999999999999999999887 99999999998443
No 10
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.5e-29 Score=189.06 Aligned_cols=126 Identities=29% Similarity=0.293 Sum_probs=104.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|+|++|.|+.. |++|+|+++|.+++.. .+++.+||+||+..+.+++|+.||+.+...+.. .....
T Consensus 45 STLLniig~ld~----pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~ 117 (226)
T COG1136 45 STLLNLLGGLDK----PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGR 117 (226)
T ss_pred HHHHHHHhcccC----CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhH
Confidence 367777777777 5999999999988632 235679999999999999999999988765432 22224
Q ss_pred HHHHHHHHHHHcCCCcccc-CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~-~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+|+.+..+ +++.+|||||||||+|||||+.+|++++ .||||..+|+.++
T Consensus 118 ~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iil--ADEPTgnLD~~t~ 178 (226)
T COG1136 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIIL--ADEPTGNLDSKTA 178 (226)
T ss_pred HHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEE--eeCccccCChHHH
Confidence 5667889999999987666 8899999999999999999999999988 9999999996643
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.7e-29 Score=198.17 Aligned_cols=125 Identities=28% Similarity=0.392 Sum_probs=109.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++|+|+|++.| ++|+|.++|.+... ...++.+||+||++.+++.+|++|++.|.+.++.. ......+++
T Consensus 45 TTllk~l~gl~~p----~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~ 117 (293)
T COG1131 45 TTLLKILAGLLKP----TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERI 117 (293)
T ss_pred HHHHHHHhCCcCC----CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHH
Confidence 4789999999995 89999999999865 35577899999999999999999999998877632 223456789
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++++.++|.+..++++++||+|||||++||+||+++|+++| |||||+||||.+
T Consensus 118 ~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli--LDEPt~GLDp~~ 171 (293)
T COG1131 118 EELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI--LDEPTSGLDPES 171 (293)
T ss_pred HHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE--ECCCCcCCCHHH
Confidence 999999999986788999999999999999999999999888 999999999873
No 12
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1e-30 Score=191.52 Aligned_cols=130 Identities=28% Similarity=0.394 Sum_probs=109.2
Q ss_pred HHHHHhhhhhcCCCCcceEEEECCEecCcccc----cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 11 GIHLLGQRVVHELSDVDGQILLNGLEVEKNLM----VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~----~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+.+++|++.| ++|+|.++|.+++..++ +..+||+||++..|..+||.+|+......+.. .......+.++
T Consensus 46 ~Fymi~Glv~~----d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l 120 (243)
T COG1137 46 TFYMIVGLVRP----DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEEL 120 (243)
T ss_pred EEEEEEEEEec----CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHH
Confidence 44567888885 89999999999987532 34479999999999999999999887766521 11223444568
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheee
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFIT 147 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~ 147 (156)
+++++.|++.+..+++...||||||+|+.|||||+.+|++++ |||||+|+||.+..+|.
T Consensus 121 ~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL--LDEPFAGVDPiaV~dIq 179 (243)
T COG1137 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL--LDEPFAGVDPIAVIDIQ 179 (243)
T ss_pred HHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE--ecCCccCCCchhHHHHH
Confidence 899999999999999999999999999999999999999998 99999999999887764
No 13
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=195.77 Aligned_cols=127 Identities=25% Similarity=0.272 Sum_probs=107.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
||+++|...+..+++|++|+|.++|.++.+. ..++.+++|||+..++|+.||.+|..|+...+ +....+.
T Consensus 65 SGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er 141 (386)
T COG4175 65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAER 141 (386)
T ss_pred CCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHH
Confidence 4444444444444446999999999998642 23566899999999999999999999987664 4566677
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+.++.+||..+.++++.+|||||||||+|||||+.+|++++ +||||+.|||.
T Consensus 142 ~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlL--MDEaFSALDPL 198 (386)
T COG4175 142 EERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILL--MDEAFSALDPL 198 (386)
T ss_pred HHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEE--ecCchhhcChH
Confidence 8899999999999999999999999999999999999999999998 99999999986
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.8e-29 Score=187.22 Aligned_cols=131 Identities=25% Similarity=0.230 Sum_probs=111.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-----cCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~ 77 (156)
.|++|+|.|++. |++|+|.++|.++... .+++.+||+||++.+.+.++|.+|+..+..-+.. .++
T Consensus 44 STLLR~lngl~d----~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfgl 119 (258)
T COG3638 44 STLLRSLNGLVD----PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119 (258)
T ss_pred HHHHHHHhcccC----CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCC
Confidence 478899999777 5999999999887642 4578899999999999999999999876432211 234
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
..++.+..+-++++++|+.+...++..+|||||||||+|||||+++|++++ .|||+++|||.++..
T Consensus 120 fsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL--ADEPvasLDp~~a~~ 185 (258)
T COG3638 120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL--ADEPVASLDPESAKK 185 (258)
T ss_pred CCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe--cCCcccccChhhHHH
Confidence 556677788899999999999999999999999999999999999999998 999999999986643
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-28 Score=186.74 Aligned_cols=132 Identities=22% Similarity=0.205 Sum_probs=105.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcc-cCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMD-RNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ 85 (156)
.|++|+|+|++.| .+|+|.+.|.+......+..+|||||...+ -..+||+|.+..+...+.. .....+.+++.
T Consensus 44 STLlK~iLGll~p----~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~ 119 (254)
T COG1121 44 STLLKAILGLLKP----SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119 (254)
T ss_pred HHHHHHHhCCCcC----CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHH
Confidence 4788888888885 899999999988755445789999996522 2346999988765222211 11223455788
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
++++++++|+.+..++++.+|||||+|||-|||||+.+|++++ |||||.|+|+.++..+
T Consensus 120 v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll--LDEP~~gvD~~~~~~i 178 (254)
T COG1121 120 VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL--LDEPFTGVDVAGQKEI 178 (254)
T ss_pred HHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE--ecCCcccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999866543
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=180.73 Aligned_cols=127 Identities=20% Similarity=0.285 Sum_probs=113.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|++++.| ++|+|+++|.+..+. ..++.+|.++.+..+|..+|++||+.|+++++ ++.....+.++
T Consensus 42 TT~LRmiatlL~P----~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari 114 (245)
T COG4555 42 TTLLRMIATLLIP----DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARI 114 (245)
T ss_pred hhHHHHHHHhccC----CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHH
Confidence 3789999999995 899999999997543 56889999998888999999999999988775 34566677899
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+.+++.++.|++++++|.||||||+|||||+++|+++| +|||++|+|.++.+
T Consensus 115 ~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v--lDEP~sGLDi~~~r 170 (245)
T COG4555 115 AELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV--LDEPTSGLDIRTRR 170 (245)
T ss_pred HHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE--EcCCCCCccHHHHH
Confidence 999999999999999999999999999999999999999998 99999999977554
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.8e-28 Score=194.02 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.+||+||++.+|+++|+.+|+.++...+ ........+++.
T Consensus 44 STLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~ 116 (356)
T PRK11650 44 STLLRMVAGLER----ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVA 116 (356)
T ss_pred HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHH
Confidence 367888888877 4899999999998643 33467999999999999999999998875432 223444556789
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|+|+.+
T Consensus 117 ~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL--LDEP~s~LD~~~ 169 (356)
T PRK11650 117 EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL--FDEPLSNLDAKL 169 (356)
T ss_pred HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence 99999999999999999999999999999999999999998 999999999663
No 18
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.3e-27 Score=192.24 Aligned_cols=125 Identities=24% Similarity=0.302 Sum_probs=106.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc---c----cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL---M----VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~---~----~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++.... . ++.++|+||++.+|+.+|+.+|+.+..... ++....
T Consensus 33 STLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~---~~~~~~ 105 (363)
T TIGR01186 33 STTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQE 105 (363)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 367788888877 58999999999986421 2 567999999999999999999998875432 233445
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+++.++++.++|....++++.+|||||||||+|||||+.+|+++| +||||+|+||.+
T Consensus 106 ~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLL--lDEP~saLD~~~ 164 (363)
T TIGR01186 106 RKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILL--MDEAFSALDPLI 164 (363)
T ss_pred HHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence 56688999999999988999999999999999999999999999998 999999999874
No 19
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=191.22 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=106.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.+||+||+..+|+++|+.+|+.|....+ ........+++.
T Consensus 46 STLLr~IaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~ 118 (351)
T PRK11432 46 TTVLRLVAGLEK----PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVK 118 (351)
T ss_pred HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHH
Confidence 367888888877 4899999999998643 33567999999999999999999999876432 223444567889
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| ||||++|+|+.+
T Consensus 119 ~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL--LDEP~s~LD~~~ 171 (351)
T PRK11432 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL--FDEPLSNLDANL 171 (351)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHH
Confidence 99999999999999999999999999999999999999998 999999999763
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=1.7e-27 Score=190.40 Aligned_cols=127 Identities=23% Similarity=0.260 Sum_probs=106.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++... ..++.+||+||+..+++..|+.+|+.+..... +......
T Consensus 45 STLlr~I~gl~~----p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~ 117 (343)
T TIGR02314 45 STLIRCVNLLER----PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEI 117 (343)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHH
Confidence 367888888877 5899999999998642 13567999999999999999999998765432 2234455
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++| +||||+|+||.++.
T Consensus 118 ~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL--lDEPts~LD~~t~~ 177 (343)
T TIGR02314 118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL--CDEATSALDPATTQ 177 (343)
T ss_pred HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence 6678899999999999999999999999999999999999999998 99999999988554
No 21
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=1.7e-27 Score=187.93 Aligned_cols=127 Identities=25% Similarity=0.259 Sum_probs=106.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++.| ++|+|+++|.++... ..++.+||+||++.+++.+|+.||+.+....+ +.......+++
T Consensus 47 STLl~~l~Gl~~p----~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 119 (306)
T PRK13537 47 TTTLRMLLGLTHP----DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALV 119 (306)
T ss_pred HHHHHHHhcCCCC----CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3788888888874 899999999997542 34677999999999999999999998765443 22333445678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+..++++++||+|||||++||+||+++|++++ |||||+|+||.++.
T Consensus 120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll--LDEPt~gLD~~~~~ 175 (306)
T PRK13537 120 PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV--LDEPTTGLDPQARH 175 (306)
T ss_pred HHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCCcCCCHHHHH
Confidence 899999999988999999999999999999999999999988 99999999987543
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=1.9e-27 Score=190.90 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|.++|+++... ..++.+||+||+..+|+.+|+.+|+.|+...+ ........+++.
T Consensus 44 STLLr~iaGl~~----p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~ 116 (353)
T TIGR03265 44 TTLLRIIAGLER----QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVA 116 (353)
T ss_pred HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 378888888877 4899999999998642 33567999999999999999999999875432 223444566889
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.++|.+..++++.+|||||||||+|||||+.+|+++| ||||++|+|+.
T Consensus 117 ~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL--LDEP~s~LD~~ 168 (353)
T TIGR03265 117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL--LDEPLSALDAR 168 (353)
T ss_pred HHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHH
Confidence 99999999999999999999999999999999999999998 99999999966
No 23
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=2.7e-27 Score=190.43 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=106.1
Q ss_pred HHHHHHHhhhhhcCCCCcc--eEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVD--GQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~--G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+..| ++ |+|.++|.++... ..++.+||+||+..+|+.+|+.+|+.|+...+ ........++
T Consensus 45 STLLr~iaGl~~p----~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~ 117 (362)
T TIGR03258 45 TTLLRAIAGFVKA----AGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAER 117 (362)
T ss_pred HHHHHHHhCCCCC----CCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence 3788888888874 78 9999999998643 23567999999999999999999998876432 2234455567
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+.++++.++|.+..++++.+|||||||||+|||||+.+|+++| ||||++|+|+.
T Consensus 118 v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL--LDEP~s~LD~~ 171 (362)
T TIGR03258 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL--LDEPLSALDAN 171 (362)
T ss_pred HHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHH
Confidence 8999999999999999999999999999999999999999998 99999999976
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.1e-27 Score=175.75 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=105.6
Q ss_pred HHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
|++||+-....... -..+|+|.++|+++... ..|+.+|+|||.+..|| .|++||+.++.+.+... + +...
T Consensus 48 T~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~--~-~~ld 123 (253)
T COG1117 48 TLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK--D-KELD 123 (253)
T ss_pred HHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc--h-HHHH
Confidence 45566555544310 02569999999998643 45888999999999999 89999999998776322 2 5667
Q ss_pred HHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 84 RTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 84 ~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
+.++..++...|. +.+++....||||||||++|||||+.+|+++| +||||++|||+++.-|
T Consensus 124 eiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlL--mDEPtSALDPIsT~kI 188 (253)
T COG1117 124 EIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL--MDEPTSALDPISTLKI 188 (253)
T ss_pred HHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEE--ecCcccccCchhHHHH
Confidence 7899999999884 45677788999999999999999999999998 9999999999988654
No 25
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=3.5e-27 Score=185.76 Aligned_cols=126 Identities=23% Similarity=0.328 Sum_probs=105.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++... ..++.+||+||++.+++.+|+.|++.+....+ +.......+++
T Consensus 33 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 105 (302)
T TIGR01188 33 TTTIRMLTTLLR----PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKDEAEERA 105 (302)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 378888888887 4899999999987532 33567999999999999999999998765443 22233445678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+||.++
T Consensus 106 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~gLD~~~~ 160 (302)
T TIGR01188 106 EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF--LDEPTTGLDPRTR 160 (302)
T ss_pred HHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence 899999999988899999999999999999999999999988 9999999998743
No 26
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-27 Score=190.16 Aligned_cols=126 Identities=20% Similarity=0.219 Sum_probs=107.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|+++|+++... ..++.+||+||++.+|+++|+.||+.++...+ ........+++.
T Consensus 59 STLLr~IaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~ 131 (377)
T PRK11607 59 STLLRMLAGFEQ----PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVN 131 (377)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 367888888887 4899999999988643 34567999999999999999999998875432 123444566789
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| ||||++|+|+.+.
T Consensus 132 ~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL--LDEP~s~LD~~~r 185 (377)
T PRK11607 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL--LDEPMGALDKKLR 185 (377)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 99999999999999999999999999999999999999998 9999999997743
No 27
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=3.9e-27 Score=177.02 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+....+ .......
T Consensus 43 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 115 (216)
T TIGR00960 43 STFLKLILGIEK----PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDA 115 (216)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHH
Confidence 378888888876 4899999999987431 13567999999998888899999998764432 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 174 (216)
T TIGR00960 116 NERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLL--ADEPTGNLDPELS 174 (216)
T ss_pred HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCcCCHHHH
Confidence 5678899999999988899999999999999999999999999988 9999999998744
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.94 E-value=6.1e-27 Score=189.11 Aligned_cols=124 Identities=20% Similarity=0.184 Sum_probs=105.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.+||+||+..+|+.+|+.+|+.|+...+ ........+++.
T Consensus 54 STLLr~IaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~ 126 (375)
T PRK09452 54 TTVLRLIAGFET----PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVM 126 (375)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHH
Confidence 367888888877 4899999999998643 23567999999999999999999998875432 223334456788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| ||||++|+|+.
T Consensus 127 ~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL--LDEP~s~LD~~ 178 (375)
T PRK09452 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL--LDESLSALDYK 178 (375)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCcCCHH
Confidence 99999999999999999999999999999999999999888 99999999966
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.2e-27 Score=183.04 Aligned_cols=132 Identities=23% Similarity=0.254 Sum_probs=109.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~ 84 (156)
.|++|+|+|+..| .+|+|+++|+++... ..++.+||+||.+...+.+||.|.+.++...+..+ ......+.+
T Consensus 42 STLLk~l~g~l~p----~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~ 117 (258)
T COG1120 42 STLLKCLAGLLKP----KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117 (258)
T ss_pred HHHHHHHhccCCC----CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHH
Confidence 4788899998885 899999999998653 45788999999998888999999887664322211 223445666
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
.+.++++.+++.+..++.+.+||||||||+.|||||+++|++++ |||||+.||..-|+.+
T Consensus 118 ~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL--LDEPTs~LDi~~Q~ev 177 (258)
T COG1120 118 IVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL--LDEPTSHLDIAHQIEV 177 (258)
T ss_pred HHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE--eCCCccccCHHHHHHH
Confidence 89999999999999999999999999999999999999999998 9999999997755543
No 30
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=7.7e-27 Score=175.53 Aligned_cols=126 Identities=25% Similarity=0.288 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|.++|.++.... .++.++|++|++.+++.+|+.+++.+....+ ......
T Consensus 44 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~ 116 (218)
T cd03255 44 STLLNILGGLDR----PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKE 116 (218)
T ss_pred HHHHHHHhCCcC----CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHH
Confidence 367888888876 48999999999875321 2456999999998888899999998765332 122223
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+.+.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--LDEP~~~LD~~~~ 176 (218)
T cd03255 117 RRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIIL--ADEPTGNLDSETG 176 (218)
T ss_pred HHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEE--EcCCcccCCHHHH
Confidence 44578899999999888899999999999999999999999999888 9999999998754
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=176.71 Aligned_cols=127 Identities=26% Similarity=0.309 Sum_probs=103.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++.+|+.+|+.+...... .......
T Consensus 40 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~ 113 (235)
T cd03261 40 STLLRLIVGLLR----PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEI 113 (235)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHH
Confidence 367888888876 4899999999987532 235679999999988899999999987643211 1223344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll--lDEPt~~LD~~~~ 172 (235)
T cd03261 114 REIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL--YDEPTAGLDPIAS 172 (235)
T ss_pred HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence 5678889999999888899999999999999999999999999888 9999999997744
No 32
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=174.29 Aligned_cols=126 Identities=25% Similarity=0.256 Sum_probs=103.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++..|+.+++.+..... ........+++.
T Consensus 40 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 112 (213)
T cd03259 40 TTLLRLIAGLER----PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVR 112 (213)
T ss_pred HHHHHHHhCCCC----CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHH
Confidence 367888888876 4899999999987542 23456899999998888899999997754322 122333445688
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll--lDEPt~~LD~~~~ 166 (213)
T cd03259 113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL--LDEPLSALDAKLR 166 (213)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 99999999988899999999999999999999999999888 9999999997743
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=1.2e-26 Score=185.42 Aligned_cols=126 Identities=23% Similarity=0.250 Sum_probs=105.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++... ..++.+||+||++.+++.+|+.+++.+....+ ........+++
T Consensus 81 STLl~~L~Gl~~----p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 153 (340)
T PRK13536 81 STIARMILGMTS----PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVI 153 (340)
T ss_pred HHHHHHHHcCCC----CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 378888888887 4899999999987532 34567999999999999999999998755433 12233445567
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+||+++|+++| |||||+||||.++
T Consensus 154 ~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi--LDEPt~gLD~~~r 208 (340)
T PRK13536 154 PSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI--LDEPTTGLDPHAR 208 (340)
T ss_pred HHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence 889999999988999999999999999999999999999988 9999999998744
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.94 E-value=9.7e-27 Score=186.75 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|+++|+++... ..++.++|+||+..+|+.+|+.+|+.+....... .........+++
T Consensus 42 STLLr~IaGl~~----p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
T PRK10851 42 TTLLRIIAGLEH----QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117 (353)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 367888888877 4899999999998643 2346799999999999999999999887543110 112334456688
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+|||||||||+|||||+.+|+++| +||||+|+|+.++
T Consensus 118 ~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL--LDEP~s~LD~~~r 172 (353)
T PRK10851 118 TQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL--LDEPFGALDAQVR 172 (353)
T ss_pred HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 999999999999999999999999999999999999999988 9999999997643
No 35
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.4e-27 Score=179.50 Aligned_cols=126 Identities=22% Similarity=0.227 Sum_probs=106.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecC----cccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVE----KNLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~----~~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
|+++++.|++. |++|+|.++|.++. ....++.+|||||++. .+...||.+.+.|+.... +.+.....+
T Consensus 45 TL~~~l~GLl~----p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~ 117 (235)
T COG1122 45 TLLKLLNGLLK----PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEE 117 (235)
T ss_pred HHHHHHcCcCc----CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHH
Confidence 56666666666 58999999999876 2356788999999974 456779999999876543 345556788
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++.++++.+++.+..++.+.+|||||||||+||.+|+.+|+++| |||||+|+||..+.
T Consensus 118 rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili--LDEPta~LD~~~~~ 175 (235)
T COG1122 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL--LDEPTAGLDPKGRR 175 (235)
T ss_pred HHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE--EcCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999998 99999999987543
No 36
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=175.27 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------c-cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------M-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++.... . ++.++|+||++.+++.+|+.+|+.+..... ......
T Consensus 49 STLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~ 121 (233)
T PRK11629 49 STLLHLLGGLDT----PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAE 121 (233)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHH
Confidence 378888888876 58999999999875321 1 256999999998888899999998754322 122334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++.
T Consensus 122 ~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll--LDEPt~~LD~~~~~ 182 (233)
T PRK11629 122 INSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL--ADEPTGNLDARNAD 182 (233)
T ss_pred HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHHH
Confidence 45678899999999888899999999999999999999999999988 99999999987543
No 37
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=187.02 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=104.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||+..+|+.+|+.+|+.+....+ ........+++.
T Consensus 43 STLL~~iaGl~~----p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~ 115 (369)
T PRK11000 43 STLLRMIAGLED----ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVN 115 (369)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHH
Confidence 367888888877 4899999999988542 23456999999999999999999998765432 123334456788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|+|+.+
T Consensus 116 ~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL--LDEPts~LD~~~ 168 (369)
T PRK11000 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL--LDEPLSNLDAAL 168 (369)
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence 99999999988999999999999999999999999999998 999999999764
No 38
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-26 Score=173.61 Aligned_cols=124 Identities=25% Similarity=0.299 Sum_probs=103.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+.. |++|+|.++|.++.. .++.++|++|++.+++..|+.+|+.+....+ ........+.+.+
T Consensus 44 STLl~~l~Gl~~----~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ 114 (220)
T cd03293 44 STLLRIIAGLER----PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEE 114 (220)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 367888888876 489999999998753 3567999999998888899999998764332 1222334457889
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 115 ~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll--LDEPt~~LD~~~~ 167 (220)
T cd03293 115 LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL--LDEPFSALDALTR 167 (220)
T ss_pred HHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--ECCCCCCCCHHHH
Confidence 9999999888899999999999999999999999999888 9999999998754
No 39
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.3e-27 Score=171.05 Aligned_cols=122 Identities=22% Similarity=0.282 Sum_probs=108.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++++|+..| ..|.|.++|..++... ...|.|||+..++|.+++.+|+.|+.+++ +..+....+++.+
T Consensus 45 TTLLnl~AGf~~P----~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q 115 (259)
T COG4525 45 TTLLNLIAGFVTP----SRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQ 115 (259)
T ss_pred HHHHHHHhcCcCc----ccceEEECCEeccCCC--ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 3678888888885 8999999999998653 23589999999999999999999998775 4566677788899
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.+..+||++..++++.+||||||||+.|||||+.+|+.++ ||||+..+|.-
T Consensus 116 ~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll--LDEPfgAlDa~ 166 (259)
T COG4525 116 MLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL--LDEPFGALDAL 166 (259)
T ss_pred HHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe--ecCchhhHHHH
Confidence 9999999998999999999999999999999999999888 99999999965
No 40
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=2e-26 Score=181.43 Aligned_cols=126 Identities=20% Similarity=0.295 Sum_probs=105.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++... ..++.+||+||++.+++.+|+.|++.+....+ +.......+++
T Consensus 42 TTLl~~l~Gl~~----~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 114 (301)
T TIGR03522 42 STTMKIITGYLP----PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRV 114 (301)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 368888888877 5899999999987542 34567999999999999999999998765443 22333445678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+||+++|+++| |||||+|+||.++
T Consensus 115 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli--LDEPt~gLD~~~~ 169 (301)
T TIGR03522 115 EEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI--LDEPTTGLDPNQL 169 (301)
T ss_pred HHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 899999999998999999999999999999999999999988 9999999998744
No 41
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=3.3e-27 Score=171.05 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=106.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|.|+|...| .+|+|+++|++.+.. +..+-++++||++.+|..+||.+|+.++..... .++ ...+++++
T Consensus 39 STLLnLIAGF~~P----~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~ 111 (231)
T COG3840 39 STLLNLIAGFETP----ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVE 111 (231)
T ss_pred HHHHHHHHhccCC----CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHH
Confidence 4789999999995 899999999998753 445668999999999999999999987643221 122 34567899
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.++..+|+..+.++.+.+|||||||||+|||||..+-++++ |||||+.+||.
T Consensus 112 ~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL--LDEPFsALdP~ 163 (231)
T COG3840 112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL--LDEPFSALDPA 163 (231)
T ss_pred HHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE--ecCchhhcCHH
Confidence 99999999999999999999999999999999999999888 99999999986
No 42
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=2e-26 Score=173.25 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=103.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++..|+.+|+.+....+ .........++
T Consensus 45 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 117 (218)
T cd03266 45 TTTLRMLAGLLE----PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARL 117 (218)
T ss_pred HHHHHHHhCCcC----CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 367888888876 4899999999987532 33567999999998888899999998754332 12233445678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~ 172 (218)
T cd03266 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL--LDEPTTGLDVMAT 172 (218)
T ss_pred HHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCcCCCHHHH
Confidence 899999999988899999999999999999999999999888 9999999998743
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-26 Score=172.93 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=103.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++.+|+.+++.+....+ ........+++
T Consensus 40 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 112 (220)
T cd03265 40 TTTIKMLTTLLK----PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERI 112 (220)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 377888888876 5899999999887532 23456899999998888999999998764332 12233345578
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 113 ~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll--lDEPt~~LD~~~~ 167 (220)
T cd03265 113 DELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF--LDEPTIGLDPQTR 167 (220)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCccCCCHHHH
Confidence 899999999988899999999999999999999999999888 9999999998754
No 44
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.94 E-value=3.2e-26 Score=182.02 Aligned_cols=125 Identities=21% Similarity=0.188 Sum_probs=104.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||+..+|+.+|+.+|+.+....+ ........+++.
T Consensus 10 STLl~~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~ 82 (325)
T TIGR01187 10 TTLLRLLAGFEQ----PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAEIKPRVL 82 (325)
T ss_pred HHHHHHHHCCCC----CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHHHHHHHH
Confidence 368888888887 4899999999988542 23567999999999999999999998875432 122333456788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++++.+++.+..++++.+||||||||++|||||+.+|+++| |||||+|+|+.+
T Consensus 83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lll--LDEP~s~LD~~~ 135 (325)
T TIGR01187 83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILL--LDEPLSALDKKL 135 (325)
T ss_pred HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCccCCHHH
Confidence 99999999988999999999999999999999999999888 999999999763
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.4e-26 Score=183.09 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=104.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++... ..++.+||+||++.+++..|+.+|+.+..... .......
T Consensus 45 STLlk~L~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~ 117 (343)
T PRK11153 45 STLIRCINLLER----PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEI 117 (343)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHH
Confidence 367888888876 5899999999987532 12467999999999888999999998765432 2233344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl--LDEPts~LD~~~~ 176 (343)
T PRK11153 118 KARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL--CDEATSALDPATT 176 (343)
T ss_pred HHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 5678899999999988899999999999999999999999999888 9999999997743
No 46
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.6e-26 Score=185.80 Aligned_cols=126 Identities=24% Similarity=0.290 Sum_probs=104.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++.... .++.++|+||++.+++.+|+.||+.+....+ .+....
T Consensus 68 STLLr~I~Gl~~----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~ 140 (400)
T PRK10070 68 STMVRLLNRLIE----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEE 140 (400)
T ss_pred HHHHHHHHcCCC----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHH
Confidence 367788888776 58999999999985321 1346999999999999999999998765432 223334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 141 ~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL--LDEPts~LD~~~r 200 (400)
T PRK10070 141 RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL--MDEAFSALDPLIR 200 (400)
T ss_pred HHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHH
Confidence 45678899999999988999999999999999999999999999988 9999999998743
No 47
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=3.3e-26 Score=180.29 Aligned_cols=126 Identities=24% Similarity=0.265 Sum_probs=103.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|+++|.++... ..++.+||+||++.+++.+|+.+++.+....+ ........+++
T Consensus 44 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 116 (303)
T TIGR01288 44 STIARMLLGMIS----PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVI 116 (303)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 367888888876 4899999999987432 23567999999998888999999997654332 12233344567
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 117 ~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~gLD~~~~ 171 (303)
T TIGR01288 117 PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI--LDEPTTGLDPHAR 171 (303)
T ss_pred HHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence 789999999988899999999999999999999999999988 9999999998754
No 48
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=3.6e-26 Score=171.44 Aligned_cols=127 Identities=25% Similarity=0.280 Sum_probs=103.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+....+ .......
T Consensus 42 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 114 (214)
T TIGR02673 42 TTLLKLLYGALT----PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREI 114 (214)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHH
Confidence 367888888876 5899999999987532 23467899999998888899999998764332 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++.+.+||||||||++||+||+.+|+++| |||||+|+|+.++.
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--LDEPt~~LD~~~~~ 174 (214)
T TIGR02673 115 QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL--ADEPTGNLDPDLSE 174 (214)
T ss_pred HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCcccCCHHHHH
Confidence 5678899999999888899999999999999999999999999988 99999999987543
No 49
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=4.3e-26 Score=170.94 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+....+ ........+++.
T Consensus 40 STLl~~l~G~~~----~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 112 (213)
T cd03301 40 TTTLRMIAGLEE----PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVR 112 (213)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 378888888876 4899999999987532 22456999999998888899999997764332 122334456788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 113 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll--lDEPt~~LD~~~~~ 167 (213)
T cd03301 113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL--MDEPLSNLDAKLRV 167 (213)
T ss_pred HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence 89999999888899999999999999999999999999888 99999999987543
No 50
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=3.2e-26 Score=171.60 Aligned_cols=126 Identities=22% Similarity=0.261 Sum_probs=103.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+....+ .......
T Consensus 41 STLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~ 113 (214)
T cd03292 41 STLLKLIYKEEL----PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREI 113 (214)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHH
Confidence 367888888876 5899999999987532 23467999999999999999999998764332 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 172 (214)
T cd03292 114 RKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI--ADEPTGNLDPDTT 172 (214)
T ss_pred HHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE--EeCCCCcCCHHHH
Confidence 4578899999999888899999999999999999999999999888 9999999998744
No 51
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=4.7e-26 Score=171.59 Aligned_cols=126 Identities=27% Similarity=0.296 Sum_probs=102.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------cc-ceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------MV-KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~~-~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|+.. |++|+|+++|.++.... .+ +.++|++|++.+++..|+.+|+.+....+ ......
T Consensus 45 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 117 (221)
T TIGR02211 45 STLLHLLGGLDN----PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKE 117 (221)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHH
Confidence 378888888877 48999999999875321 12 56899999998888899999998754322 122223
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++.+..++.+.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~ 177 (221)
T TIGR02211 118 AKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVL--ADEPTGNLDNNNA 177 (221)
T ss_pred HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCCCcCCHHHH
Confidence 34567899999999888899999999999999999999999999888 9999999997744
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.2e-26 Score=171.38 Aligned_cols=125 Identities=22% Similarity=0.357 Sum_probs=103.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+.. |++|+|.++|.++.. ..++.++|++|++.+++..|+.+|+.+....+ ........+.+.+
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ 111 (210)
T cd03269 40 TTTIRMILGIIL----PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDE 111 (210)
T ss_pred HHHHHHHhCCCC----CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHH
Confidence 367888888876 589999999998754 33567999999998888899999997754332 1222334567889
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 112 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll--lDEP~~~LD~~~~ 164 (210)
T cd03269 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI--LDEPFSGLDPVNV 164 (210)
T ss_pred HHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence 9999999888899999999999999999999999999888 9999999997744
No 53
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.2e-26 Score=171.51 Aligned_cols=126 Identities=26% Similarity=0.339 Sum_probs=103.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++.+|+.+|+.+....+ ........+.+
T Consensus 39 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 111 (211)
T cd03264 39 TTLMRILATLTP----PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARV 111 (211)
T ss_pred HHHHHHHhCCCC----CCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 367888888876 4899999999887532 23567899999998888899999998754332 12222344578
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 112 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 166 (211)
T cd03264 112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI--VDEPTAGLDPEER 166 (211)
T ss_pred HHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 899999999888899999999999999999999999999988 9999999998754
No 54
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=6.4e-26 Score=170.76 Aligned_cols=126 Identities=30% Similarity=0.454 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+....+ ........+++
T Consensus 42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 114 (220)
T cd03263 42 TTTLKMLTGELR----PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEV 114 (220)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 367888888876 4899999999987532 23566999999998888899999998764432 12233344568
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~~LD~~~~ 169 (220)
T cd03263 115 ELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL--LDEPTSGLDPASR 169 (220)
T ss_pred HHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCCCCCCHHHH
Confidence 899999999888899999999999999999999999999988 9999999998744
No 55
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.1e-25 Score=174.74 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=102.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++... . .++.++|+||++.+++..|+.+|+.+..... ......
T Consensus 64 STLl~~L~Gl~~----p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~ 136 (269)
T cd03294 64 STLLRCINRLIE----PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAE 136 (269)
T ss_pred HHHHHHHhcCCC----CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHH
Confidence 378888888877 4899999999987532 1 1356899999998888899999998764332 122333
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 137 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill--LDEPt~~LD~~~~ 196 (269)
T cd03294 137 REERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL--MDEAFSALDPLIR 196 (269)
T ss_pred HHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence 44568889999999988899999999999999999999999999988 9999999998743
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=1.1e-25 Score=170.66 Aligned_cols=126 Identities=27% Similarity=0.390 Sum_probs=102.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... . .++.++|+||++.+++.+|+.+|+.+....+ ........+
T Consensus 40 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 112 (232)
T cd03218 40 TTTFYMIVGLVK----PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREE 112 (232)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHH
Confidence 378888888877 4899999999987532 1 2346899999998899999999998754322 112223445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 113 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~ 169 (232)
T cd03218 113 KLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL--LDEPFAGVDPIAV 169 (232)
T ss_pred HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence 67899999999988899999999999999999999999999988 9999999998754
No 57
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.93 E-value=1e-25 Score=166.30 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++. .+...|+.+|+.+....+ .......
T Consensus 32 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~---~~~~~~~ 104 (190)
T TIGR01166 32 STLLLHLNGLLR----PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNL---GLSEAEV 104 (190)
T ss_pred HHHHHHHhCCCC----CCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHc---CCCHHHH
Confidence 367888888876 4899999999987421 23456899999973 233579999998754322 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 164 (190)
T TIGR01166 105 ERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL--LDEPTAGLDPAGRE 164 (190)
T ss_pred HHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence 4567899999999988899999999999999999999999999888 99999999987543
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=1.1e-25 Score=171.06 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=102.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccC-------Cc
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-------LH 78 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~ 78 (156)
|++++|+|++. |++|+|+++|.++.... .+..++|+||++.+++.+|+.+++.+......... ..
T Consensus 41 TLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 116 (236)
T cd03219 41 TLFNLISGFLR----PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARRE 116 (236)
T ss_pred HHHHHHcCCCC----CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccccccccc
Confidence 67788888776 58999999999875421 23458999999999999999999987643321100 01
Q ss_pred HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+.+.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 179 (236)
T cd03219 117 EREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLL--LDEPAAGLNPEET 179 (236)
T ss_pred HHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 22344578899999999988899999999999999999999999999888 9999999997744
No 59
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=8.4e-26 Score=169.26 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=103.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++. |++|+|+++|.++.. ...++.++|++|++.+++..|+.+|+.+..... .........
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~ 113 (213)
T cd03262 40 STLLRCINLLEE----PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAE 113 (213)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHH
Confidence 367888888876 489999999998742 123567999999998888899999997753211 112233445
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.+++.+..++++.+||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 114 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~~LD~~~~ 171 (213)
T cd03262 114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML--FDEPTSALDPELV 171 (213)
T ss_pred HHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence 678899999999888899999999999999999999999999888 9999999998754
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=4.6e-26 Score=170.01 Aligned_cols=122 Identities=24% Similarity=0.261 Sum_probs=98.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|+++|.++.....++.++|++|++. .+...|+.||+.+..... . ...+++.
T Consensus 40 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~ 108 (205)
T cd03226 40 TTLAKILAGLIK----ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAE 108 (205)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHH
Confidence 367888888877 489999999998754344567999999964 334679999997654221 1 1124678
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 162 (205)
T cd03226 109 TVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI--FDEPTSGLDYKNM 162 (205)
T ss_pred HHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCccCCHHHH
Confidence 89999999988899999999999999999999999999888 9999999998754
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.1e-25 Score=170.97 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=103.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++.+|+.+|+.+....+ .......
T Consensus 45 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~ 117 (233)
T cd03258 45 STLIRCINGLER----PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEI 117 (233)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHH
Confidence 367888888877 4899999999987532 12466899999999888899999997754332 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+.++++.+++.+..++++.+||+|||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--LDEP~~~LD~~~~ 176 (233)
T cd03258 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL--CDEATSALDPETT 176 (233)
T ss_pred HHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCCCcCCHHHH
Confidence 4568899999999988899999999999999999999999999888 9999999997744
No 62
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.8e-27 Score=178.39 Aligned_cols=118 Identities=21% Similarity=0.174 Sum_probs=102.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++|+|+|++.| ++|.|.++|.-+.. ...++++|||||+..+||++||+.|+.|+... .
T Consensus 38 Tslin~IaGL~rP----deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~---------~ 104 (352)
T COG4148 38 TSLINMIAGLTRP----DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK---------S 104 (352)
T ss_pred hhHHHHHhccCCc----cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc---------c
Confidence 3789999999996 89999999986532 13468899999999999999999999987421 1
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+...+..++..+|+++.+++++.+|||||||||+|+|||.+.|++++ +|||.+++|-.
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLL--mDEPLaSLD~~ 162 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLL--MDEPLASLDLP 162 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeee--ecCchhhcccc
Confidence 33467788999999999999999999999999999999999999888 99999999843
No 63
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.93 E-value=1.1e-25 Score=168.56 Aligned_cols=126 Identities=24% Similarity=0.262 Sum_probs=101.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++. .++..|+.+|+.+..... .........
T Consensus 41 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~ 113 (211)
T cd03225 41 STLLRLLNGLLG----PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEE 113 (211)
T ss_pred HHHHHHHhcCCC----CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHH
Confidence 378888888877 4899999999987532 23567899999974 356789999997654322 122233445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 114 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 170 (211)
T cd03225 114 RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL--LDEPTAGLDPAGR 170 (211)
T ss_pred HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 68889999999888899999999999999999999999999888 9999999998743
No 64
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=1.3e-25 Score=167.39 Aligned_cols=126 Identities=25% Similarity=0.296 Sum_probs=102.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+..... ......
T Consensus 38 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~ 110 (206)
T TIGR03608 38 STLLNIIGLLEK----FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKE 110 (206)
T ss_pred HHHHHHHhcCCC----CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHH
Confidence 378888888876 4899999999985321 13457999999998888899999998754322 122334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll--lDEPt~~LD~~~~ 170 (206)
T TIGR03608 111 KREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL--ADEPTGSLDPKNR 170 (206)
T ss_pred HHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcCCCCHHHH
Confidence 45678899999999888899999999999999999999999999988 9999999997643
No 65
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.3e-25 Score=171.24 Aligned_cols=129 Identities=24% Similarity=0.224 Sum_probs=102.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccC-CcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-LHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+....+.... .......+++
T Consensus 42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 117 (239)
T cd03296 42 TTLLRLIAGLER----PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117 (239)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHH
Confidence 368888888876 4899999999987532 224568999999988888999999987543221100 0222334567
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+||+.+|+++| |||||+|+|+.+.
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEP~~~LD~~~~ 172 (239)
T cd03296 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL--LDEPFGALDAKVR 172 (239)
T ss_pred HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 889999999888899999999999999999999999999888 9999999997743
No 66
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=1.5e-25 Score=169.16 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=102.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+....+ .......
T Consensus 42 STLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 114 (222)
T PRK10908 42 STLLKLICGIER----PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDI 114 (222)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHH
Confidence 367888888876 5899999999987531 13567899999998888899999997754332 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.+++.++++.+++.+..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.+
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~ 172 (222)
T PRK10908 115 RRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL--ADEPTGNLDDAL 172 (222)
T ss_pred HHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCcCCHHH
Confidence 4567889999999888899999999999999999999999999888 999999999864
No 67
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=2e-25 Score=168.94 Aligned_cols=127 Identities=26% Similarity=0.248 Sum_probs=103.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------c-cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------M-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|.++|.++.... . ++.++|++|++.+++..|+.+|+.+....+ ......
T Consensus 50 STLl~~i~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~ 122 (228)
T PRK10584 50 STLLAILAGLDD----GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQ 122 (228)
T ss_pred HHHHHHHHcCCC----CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHH
Confidence 378888888876 48999999999875321 1 246999999998888899999997654322 122334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~ 183 (228)
T PRK10584 123 SRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLF--ADEPTGNLDRQTGD 183 (228)
T ss_pred HHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHHH
Confidence 45678899999999888899999999999999999999999999888 99999999977543
No 68
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=1.6e-25 Score=179.82 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=102.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+.+|+.+|+.++.... ....
T Consensus 37 STLl~~iaGl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~ 107 (354)
T TIGR02142 37 TTLIRLIAGLTR----PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSE 107 (354)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhH
Confidence 367888888877 4899999999987421 23567999999999999999999998764321 1223
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.+
T Consensus 108 ~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll--LDEPts~LD~~~ 166 (354)
T TIGR02142 108 RRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL--MDEPLAALDDPR 166 (354)
T ss_pred HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCCcCCCHHH
Confidence 34568899999999988999999999999999999999999999888 999999999774
No 69
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2e-25 Score=170.46 Aligned_cols=126 Identities=21% Similarity=0.333 Sum_probs=103.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. |++|+|.++|.++... ..+..++|+||++.+++..|+.+|+.+..... ........+.
T Consensus 41 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~ 113 (242)
T cd03295 41 TTTMKMINRLIE----PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRER 113 (242)
T ss_pred HHHHHHHhcCCC----CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence 377888888876 5899999999987532 23456899999998888899999998754332 1223344557
Q ss_pred HHHHHHHcCCCc--cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLK--CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~--~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+ ..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 114 ~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 171 (242)
T cd03295 114 ADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL--MDEPFGALDPITR 171 (242)
T ss_pred HHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence 889999999986 7799999999999999999999999999888 9999999997743
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=2.7e-25 Score=169.16 Aligned_cols=126 Identities=26% Similarity=0.332 Sum_probs=102.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++... ...+.++|++|++.+++..|+.+|+.+....+ ........+.+
T Consensus 41 STLl~~l~G~~~----p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~ 113 (236)
T TIGR03864 41 STLFSLLTRLYV----AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERI 113 (236)
T ss_pred HHHHHHHhCCcC----CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 367888888876 5899999999987532 22346899999988888899999997654332 12233344567
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++.+.+|||||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 114 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEP~~~LD~~~~ 168 (236)
T TIGR03864 114 AALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLL--LDEPTVGLDPASR 168 (236)
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCccCCCHHHH
Confidence 889999999988899999999999999999999999999998 9999999998754
No 71
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=8.3e-26 Score=168.89 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=101.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+....+ .. ..+++.
T Consensus 40 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~ 108 (208)
T cd03268 40 TTTMKIILGLIK----PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRID 108 (208)
T ss_pred HHHHHHHhCCcC----CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHH
Confidence 378888888877 4899999999887532 23456899999998888999999997764322 11 234677
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 162 (208)
T cd03268 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI--LDEPTNGLDPDGI 162 (208)
T ss_pred HHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCcccCCHHHH
Confidence 88999999888899999999999999999999999999888 9999999998754
No 72
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=171.49 Aligned_cols=124 Identities=22% Similarity=0.270 Sum_probs=101.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|+++|.++... ...++|++|++.+++..|+.+|+.+....+ ........+++.+
T Consensus 41 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ 111 (255)
T PRK11248 41 TTLLNLIAGFVP----YQHGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQ 111 (255)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHH
Confidence 367888888876 4899999999987532 345899999998888899999997654322 1223334457889
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..++++.+||||||||+.||+||+.+|+++| +||||+|+|+.++
T Consensus 112 ~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll--LDEPt~~LD~~~~ 164 (255)
T PRK11248 112 MLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL--LDEPFGALDAFTR 164 (255)
T ss_pred HHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 9999999888899999999999999999999999999888 9999999998754
No 73
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=2.8e-25 Score=168.13 Aligned_cols=131 Identities=31% Similarity=0.441 Sum_probs=101.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH-
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA- 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~- 88 (156)
|++++|+|++.+ ..|++|+|+++|.++.....++.++|+||++.+++.+|+.+|+.+................+.+.+
T Consensus 48 TLlk~l~G~~~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
T cd03234 48 TLLDAISGRVEG-GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV 126 (226)
T ss_pred HHHHHHhCccCC-CCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH
Confidence 678888888761 014899999999987644456779999999998999999999987643321111111122234455
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++.+++.+..++.+.+||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ill--lDEP~~gLD~~~~ 179 (226)
T cd03234 127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI--LDEPTSGLDSFTA 179 (226)
T ss_pred HHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEE--EeCCCcCCCHHHH
Confidence 8999999888889999999999999999999999999988 9999999997743
No 74
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.93 E-value=2.1e-25 Score=180.27 Aligned_cols=126 Identities=22% Similarity=0.229 Sum_probs=103.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCE----ecCcc---c----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGL----EVEKN---L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~----~i~~~---~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~ 77 (156)
.|++++|+|++. |++|+|+++|. ++... . .++.++|+||++.+++..|+.+|+.++.... +.
T Consensus 64 STLlr~L~Gl~~----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~ 136 (382)
T TIGR03415 64 SSLLRAVNGLNP----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GM 136 (382)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CC
Confidence 367888888877 58999999996 34321 1 1256999999999999999999998875432 22
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.......++.++++.+++.+..++++.+||||||||++|||||+.+|+++| +||||+|+||.++
T Consensus 137 ~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL--lDEPts~LD~~~r 200 (382)
T TIGR03415 137 PEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL--MDEPFSALDPLIR 200 (382)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHH
Confidence 334455678899999999999999999999999999999999999999998 9999999998743
No 75
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.5e-25 Score=167.09 Aligned_cols=124 Identities=26% Similarity=0.227 Sum_probs=101.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+..... ....
T Consensus 37 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~ 107 (214)
T cd03297 37 STLLRCIAGLEK----PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNRE 107 (214)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHH
Confidence 367888888876 5899999999986421 23457899999998888899999997654221 1223
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 167 (214)
T cd03297 108 DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL--LDEPFSALDRALR 167 (214)
T ss_pred HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 34568899999999888899999999999999999999999999988 9999999997743
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=174.32 Aligned_cols=126 Identities=22% Similarity=0.255 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++... ..++.+||+||++. .+...|+.+++.+..... +......
T Consensus 47 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 119 (287)
T PRK13637 47 STLIQHLNGLLK----PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEI 119 (287)
T ss_pred HHHHHHHhcCCC----CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHH
Confidence 367788888776 5899999999988531 33567999999863 334579999998754322 2344455
Q ss_pred HHHHHHHHHHcCCC--ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~--~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 120 ~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~lll--lDEPt~gLD~~~~ 180 (287)
T PRK13637 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILI--LDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCccCCCHHHH
Confidence 56788999999997 56899999999999999999999999999988 9999999998753
No 77
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.5e-25 Score=170.80 Aligned_cols=129 Identities=23% Similarity=0.252 Sum_probs=101.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhh-----cccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-----MDRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~-----~~~~~ 77 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++..|+.+|+.+..... .....
T Consensus 41 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 116 (241)
T cd03256 41 STLLRCLNGLVE----PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGL 116 (241)
T ss_pred HHHHHHHhCCcC----CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhccc
Confidence 367888888876 4899999999987532 23456899999998888899999997643210 00011
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
......+++.++++.+++.+..++++.+||||||||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 180 (241)
T cd03256 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL--ADEPVASLDPASS 180 (241)
T ss_pred CcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence 112334567889999999888899999999999999999999999999888 9999999998744
No 78
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=2.7e-25 Score=166.86 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=102.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++.+|+.+|+.+...... ........++.
T Consensus 38 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~ 110 (213)
T TIGR01277 38 STLLNLIAGFIE----PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVV 110 (213)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHH
Confidence 367888888877 4899999999987532 335669999999998888999999876432111 11222345678
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++.+++.+..++.+.+||+||+||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~~LD~~~~~ 165 (213)
T TIGR01277 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL--LDEPFSALDPLLRE 165 (213)
T ss_pred HHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence 89999999888899999999999999999999999999888 99999999977443
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=3.5e-25 Score=171.76 Aligned_cols=128 Identities=22% Similarity=0.254 Sum_probs=102.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++..|+.+|+.+...... .......
T Consensus 47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~ 120 (269)
T PRK11831 47 TTLLRLIGGQIA----PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLL 120 (269)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHH
Confidence 367888888876 4899999999987532 124568999999988888999999976532211 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..++.++++.+++.+..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++.
T Consensus 121 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~~ 180 (269)
T PRK11831 121 HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM--FDEPFVGQDPITMG 180 (269)
T ss_pred HHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence 4567889999999988899999999999999999999999999888 99999999987543
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=174.56 Aligned_cols=127 Identities=23% Similarity=0.256 Sum_probs=103.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++. .++..|+.+|+.+..... +.......+
T Consensus 47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~ 119 (279)
T PRK13650 47 STTVRLIDGLLE----AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKE 119 (279)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHH
Confidence 367788888876 5899999999988532 23567999999974 567789999998764322 233445556
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++.++++.+++.+..++.+.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 120 ~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl--LDEPt~~LD~~~~~ 177 (279)
T PRK13650 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII--LDEATSMLDPEGRL 177 (279)
T ss_pred HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence 78899999999988899999999999999999999999999988 99999999987443
No 81
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.9e-25 Score=167.25 Aligned_cols=126 Identities=23% Similarity=0.281 Sum_probs=102.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+...... . ......+++.
T Consensus 38 STLl~~l~gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~-~~~~~~~~~~ 110 (211)
T cd03298 38 STLLNLIAGFET----PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--K-LTAEDRQAIE 110 (211)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--C-ccHHHHHHHH
Confidence 367888888876 4899999999987542 234669999999998888999999876432110 1 1123345688
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 111 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll--lDEP~~~LD~~~~ 164 (211)
T cd03298 111 VALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL--LDEPFAALDPALR 164 (211)
T ss_pred HHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 99999999988899999999999999999999999999988 9999999997744
No 82
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=3.9e-25 Score=167.90 Aligned_cols=127 Identities=21% Similarity=0.211 Sum_probs=101.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|.++..... ..+|++|++.+++..|+.+|+.+...... .........+++.+
T Consensus 25 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~ 97 (230)
T TIGR01184 25 STLLNLISGLAQ----PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVL-PDLSKSERRAIVEE 97 (230)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcc-cCCCHHHHHHHHHH
Confidence 367888888876 489999999998764321 24899999988888999999977532111 11223344456889
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 98 ~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~gLD~~~~~ 151 (230)
T TIGR01184 98 HIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL--LDEPFGALDALTRG 151 (230)
T ss_pred HHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCCcCCCHHHHH
Confidence 9999999988899999999999999999999999999988 99999999987543
No 83
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=3.3e-25 Score=176.58 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=102.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
+++++|+|++. |++|+|+|+|.++... ..++.++|+||++ .+++.+|+.+++.+....+. .......
T Consensus 62 TLlk~i~Gl~~----p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~ 136 (331)
T PRK15079 62 TFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQE 136 (331)
T ss_pred HHHHHHHCCCC----CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHH
Confidence 67777888776 5899999999998532 1345799999997 57788999999987543321 1133445
Q ss_pred HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++. ...++++++|||||+||++||+||+.+|+++| +||||+|||+.++.
T Consensus 137 ~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli--lDEPts~LD~~~~~ 198 (331)
T PRK15079 137 VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII--CDEPVSALDVSIQA 198 (331)
T ss_pred HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence 566788999999995 46799999999999999999999999999888 99999999987553
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=3.3e-25 Score=169.05 Aligned_cols=127 Identities=21% Similarity=0.255 Sum_probs=102.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+..... .........
T Consensus 41 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~ 114 (240)
T PRK09493 41 STLLRCINKLEE----ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAE 114 (240)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHH
Confidence 367888888876 5899999999987531 23567899999998888899999997653211 112233344
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 115 ~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~~LD~~~~ 172 (240)
T PRK09493 115 KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML--FDEPTSALDPELR 172 (240)
T ss_pred HHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 567899999999888899999999999999999999999999888 9999999997743
No 85
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=3.8e-25 Score=169.53 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=102.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~ 77 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+..... ...
T Consensus 43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~ 116 (250)
T PRK11264 43 TTLLRCINLLEQ----PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--KGE 116 (250)
T ss_pred HHHHHHHhcCCC----CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh--cCC
Confidence 367888888876 4899999999987421 23456899999998888899999997643211 112
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
......+++.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 117 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lll--LDEPt~~LD~~~~ 180 (250)
T PRK11264 117 PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVIL--FDEPTSALDPELV 180 (250)
T ss_pred CHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 233345568889999999888899999999999999999999999999888 9999999997744
No 86
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=169.18 Aligned_cols=127 Identities=18% Similarity=0.325 Sum_probs=114.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|.+++|+|++.| ++|+|.|+|.+++. ..+.+|||+|++..+|+.+|+.|.+.|.+.++ +++..+..+.+...
T Consensus 43 TtfRmILglle~----~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~w 114 (300)
T COG4152 43 TTFRMILGLLEP----TEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAW 114 (300)
T ss_pred chHHHHhccCCc----cCceEEEcCcchhh-hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHH
Confidence 678999999885 89999999999874 34677999999999999999999999988875 56677888899999
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
++++++.....+++.+||.|++||+.+..|++++|+++| |||||+|+||+.+.-+
T Consensus 115 Ler~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI--LDEPFSGLDPVN~elL 169 (300)
T COG4152 115 LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI--LDEPFSGLDPVNVELL 169 (300)
T ss_pred HHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE--ecCCccCCChhhHHHH
Confidence 999999999999999999999999999999999999887 9999999999966543
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=1.9e-25 Score=170.47 Aligned_cols=129 Identities=22% Similarity=0.224 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-----ccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-----DRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~ 77 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++.+|+.+|+.+...... ....
T Consensus 42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 117 (243)
T TIGR02315 42 STLLRCINRLVE----PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR 117 (243)
T ss_pred HHHHHHHhCCcC----CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhcc
Confidence 367888888876 4899999999987531 135669999999988888999999875421100 0001
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 118 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 181 (243)
T TIGR02315 118 FSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL--ADEPIASLDPKTS 181 (243)
T ss_pred ccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 122334568889999999888899999999999999999999999999888 9999999997744
No 88
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=2.5e-25 Score=181.03 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=105.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-ccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~ 84 (156)
.|++|+|+|++. |++|+|+++|.++.. ...++.+||++|+..+++.+|+.+++.++...+. ..........+
T Consensus 43 STLLk~LaGll~----p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~ 118 (402)
T PRK09536 43 TTLLRAINGTLT----PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRA 118 (402)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHH
Confidence 378888888877 489999999998754 2345679999999988889999999876532110 01111234456
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++.++++.+++.+..++++.+||||||||++|||||+++|+++| |||||+|||+.++.
T Consensus 119 ~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL--LDEPtsgLD~~~~~ 176 (402)
T PRK09536 119 AVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL--LDEPTASLDINHQV 176 (402)
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence 78999999999988999999999999999999999999999988 99999999987544
No 89
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=177.82 Aligned_cols=119 Identities=19% Similarity=0.155 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++.. ...++.++|+||+..+|+.+|+.+|+.+.... .
T Consensus 38 STLl~~iaGl~~----p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~ 104 (352)
T PRK11144 38 TSLINAISGLTR----PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------S 104 (352)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------h
Confidence 367888888877 489999999998742 12356799999999999999999999765321 1
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++| |||||+|+|+.+
T Consensus 105 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL--LDEPts~LD~~~ 163 (352)
T PRK11144 105 MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL--MDEPLASLDLPR 163 (352)
T ss_pred hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHH
Confidence 23567899999999988999999999999999999999999999888 999999999763
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=3.9e-25 Score=167.30 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=100.4
Q ss_pred HHHHHHHhhhhhc-CCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVH-ELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~-~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+ ..+|++|+|.++|.++... ..++.++|+||++.++ ..|+.+|+.+....+. .......
T Consensus 40 STLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~ 116 (227)
T cd03260 40 STLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEEL 116 (227)
T ss_pred HHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHH
Confidence 4788999999820 0025899999999987431 2356799999998887 7899999987543321 1111223
Q ss_pred HHHHHHHHHHcCCCccccCc--cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSV--LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~--~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+..+++ +.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 117 ~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 177 (227)
T cd03260 117 DERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL--LDEPTSALDPIST 177 (227)
T ss_pred HHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 45788999999998776666 59999999999999999999999888 9999999998753
No 91
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.92 E-value=2.2e-25 Score=167.13 Aligned_cols=127 Identities=22% Similarity=0.210 Sum_probs=99.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCC--CCCCHHHHHHHHHHhhcc-cCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKMD-RNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|.++|.++. ..++.++|++|++.++ ...|+.||+.+....... .........++
T Consensus 39 STLl~~l~G~~~----p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 112 (213)
T cd03235 39 STLLKAILGLLK----PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112 (213)
T ss_pred HHHHHHHcCCCC----CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHH
Confidence 367888888876 58999999998775 2356799999997653 347999999764321100 00111234457
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 113 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 168 (213)
T cd03235 113 VDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL--LDEPFAGVDPKTQ 168 (213)
T ss_pred HHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 8899999999888899999999999999999999999999998 9999999998754
No 92
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=172.43 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|+||++. .+...|+.+|+.+..... ........+
T Consensus 47 STLl~~i~G~~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~ 119 (279)
T PRK13635 47 STLAKLLNGLLL----PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVE 119 (279)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHH
Confidence 367888888877 5899999999988542 23466999999973 566789999998764332 123344456
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++.++++.++|.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++.
T Consensus 120 ~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~gLD~~~~~ 177 (279)
T PRK13635 120 RVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII--LDEATSMLDPRGRR 177 (279)
T ss_pred HHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence 78899999999988999999999999999999999999999988 99999999987443
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=7.4e-25 Score=167.82 Aligned_cols=126 Identities=19% Similarity=0.241 Sum_probs=101.5
Q ss_pred HHHHHHHhhhhhcCCCCc-----ceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHELSDV-----DGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~-----~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 78 (156)
.|++++|+|++.| + +|+|+++|.++.. ...++.++|+||++.+++ .|+.+|+.+....+. ...
T Consensus 41 STLl~~l~G~~~p----~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~ 113 (247)
T TIGR00972 41 STLLRSLNRMNDL----VPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKD 113 (247)
T ss_pred HHHHHHHhccCCC----CcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCC
Confidence 3678888888874 5 9999999998753 123567999999988888 899999987543321 112
Q ss_pred HHHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 79 HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+++.++++.+++. +..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 180 (247)
T TIGR00972 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL--LDEPTSALDPIAT 180 (247)
T ss_pred HHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 334446788999999997 66789999999999999999999999999888 9999999998754
No 94
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=2.5e-25 Score=160.07 Aligned_cols=123 Identities=26% Similarity=0.250 Sum_probs=102.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
|++-+++|+.. |++|+|++.|+++... ...+.+|+|||...+.|++|..||+.....+... .....
T Consensus 51 TLl~vlAGLd~----~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~ 123 (228)
T COG4181 51 TLLAVLAGLDD----PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADS 123 (228)
T ss_pred hHHHHHhcCCC----CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccH
Confidence 44555555555 6999999999998542 2346799999999999999999999887766532 22344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
...+++.++.+||.+.++.++.+|||||||||+||||++..|++++ .||||..+|-.
T Consensus 124 ~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf--ADEPTGNLD~~ 180 (228)
T COG4181 124 RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF--ADEPTGNLDRA 180 (228)
T ss_pred HHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe--ccCCCCCcchh
Confidence 5678899999999999999999999999999999999999999887 99999999854
No 95
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.1e-25 Score=171.36 Aligned_cols=125 Identities=23% Similarity=0.194 Sum_probs=100.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
|++++|+|++. |++|+|+++|.++... ..++.+||+||++. .+...|+.+|+.+..... ........++
T Consensus 46 TLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~ 118 (274)
T PRK13647 46 TLLLHLNGIYL----PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERR 118 (274)
T ss_pred HHHHHHhcCCC----CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHH
Confidence 67777777776 5899999999987532 23466999999963 345679999998754321 2233344567
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 119 ~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll--lDEPt~~LD~~~~ 174 (274)
T PRK13647 119 VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV--LDEPMAYLDPRGQ 174 (274)
T ss_pred HHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCCcCCCHHHH
Confidence 8899999999988899999999999999999999999999998 9999999998744
No 96
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.2e-25 Score=170.97 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=102.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|+.. |++|+|+++|.++... .+++.++|++|++. .++..|+.+|+.+..... .........
T Consensus 49 STLl~~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~ 121 (271)
T PRK13632 49 STISKILTGLLK----PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKD 121 (271)
T ss_pred HHHHHHHhcCCC----CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHH
Confidence 367888888876 4899999999987532 34567999999974 567789999998754321 122333445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEP~~gLD~~~~ 178 (271)
T PRK13632 122 IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII--FDESTSMLDPKGK 178 (271)
T ss_pred HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 68899999999988999999999999999999999999999988 9999999998743
No 97
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.2e-25 Score=166.56 Aligned_cols=123 Identities=21% Similarity=0.261 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++|+|+|+..+ .+|+|.|+|+|++.. ..+..++||||....|+.+||.||+..+...... ......
T Consensus 43 TTlLkti~Gl~~~----~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~ 114 (237)
T COG0410 43 TTLLKTIMGLVRP----RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQER 114 (237)
T ss_pred HHHHHHHhCCCCC----CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccc
Confidence 4789999999996 799999999999864 2356689999999999999999999876533211 011112
Q ss_pred HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+++.+.| .|.+..+++..+|||||||.++|||||+.+|++++ ||||+.|+-|.
T Consensus 115 ~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL--LDEPs~GLaP~ 170 (237)
T COG0410 115 DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL--LDEPSEGLAPK 170 (237)
T ss_pred cHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE--ecCCccCcCHH
Confidence 266677777 45677899999999999999999999999999988 99999999986
No 98
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.6e-25 Score=172.41 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=99.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
.|++++|+|+.. |++|+|.++|+++.. ...++.+||+||++. .+...|+.+|+.+..... .....
T Consensus 47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~ 119 (290)
T PRK13634 47 STLLQHLNGLLQ----PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEE 119 (290)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHH
Confidence 367788888776 589999999998742 123467999999863 233569999998764322 22344
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+++.++++.++|. +..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 120 ~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~lll--lDEPt~~LD~~~~ 181 (290)
T PRK13634 120 DAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLV--LDEPTAGLDPKGR 181 (290)
T ss_pred HHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHH
Confidence 4556788999999997 56799999999999999999999999999988 9999999998754
No 99
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=9.8e-25 Score=166.53 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=102.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-----cCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~ 79 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++.+|+.+|+.+....... .....
T Consensus 42 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~ 117 (242)
T TIGR03411 42 TTMMDVITGKTR----PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS 117 (242)
T ss_pred HHHHHHHhCCCC----CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccH
Confidence 378888888877 4899999999987532 1234699999999999999999999775321100 00112
Q ss_pred HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+++.++++.+++.+..++++.+|||||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~ll--lDEPt~~LD~~~~ 179 (242)
T TIGR03411 118 AEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLL--LDEPVAGMTDEET 179 (242)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCccCCCHHHH
Confidence 2345578899999999988899999999999999999999999999888 9999999998854
No 100
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.2e-25 Score=167.72 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=107.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhc--------cc-C
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM--------DR-N 76 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~--------~~-~ 76 (156)
|++|+|+|.+.| ++|+|+|+|++++... .+..++..||...+|+++||.||+..+...+. +. .
T Consensus 45 TlfNlitG~~~P----~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~ 120 (250)
T COG0411 45 TLFNLITGFYKP----SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRAR 120 (250)
T ss_pred eeeeeecccccC----CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccch
Confidence 678899999985 8999999999998642 23446788999999999999999987643220 00 0
Q ss_pred CcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
.......+++.++++.++|.+..+.+..+||+|+|+|++|||||+.+|++++ ||||.+|+.|..+.+
T Consensus 121 ~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL--LDEPaAGln~~e~~~ 187 (250)
T COG0411 121 KEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL--LDEPAAGLNPEETEE 187 (250)
T ss_pred hhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE--ecCccCCCCHHHHHH
Confidence 1245567789999999999999999999999999999999999999999988 999999999875543
No 101
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=5.8e-25 Score=164.11 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=101.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.++|++|++.+++..|+.|++.+....+ .. ...+++
T Consensus 41 STLl~~l~G~~~----p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~ 110 (204)
T PRK13538 41 TSLLRILAGLAR----PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEAL 110 (204)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHH
Confidence 367888888877 5899999999987532 23567899999988888899999998764332 11 223567
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+..
T Consensus 111 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~ 166 (204)
T PRK13538 111 WEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWI--LDEPFTAIDKQGVA 166 (204)
T ss_pred HHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence 889999999888899999999999999999999999999988 99999999977543
No 102
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.3e-25 Score=171.76 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.|++++|+|++. |++|+|+++|.++... ..++.+||+||++ .+++ .|+.+|+.+..... ....
T Consensus 47 STLl~~L~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~ 118 (286)
T PRK13646 47 STLIQNINALLK----PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNL 118 (286)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCH
Confidence 367788888776 5899999999987431 2456799999986 3444 59999998764321 2234
Q ss_pred HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
....+++.++++.+++. +..++.+.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 119 ~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~ill--lDEPt~~LD~~~~~ 182 (286)
T PRK13646 119 DEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIV--LDEPTAGLDPQSKR 182 (286)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHHHH
Confidence 44556788999999997 67789999999999999999999999999998 99999999987543
No 103
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.3e-25 Score=167.24 Aligned_cols=128 Identities=21% Similarity=0.339 Sum_probs=103.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+..... ..........
T Consensus 43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~ 116 (241)
T PRK10895 43 TTTFYMVVGIVP----RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQRED 116 (241)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHH
Confidence 378888888877 4899999999987532 13456999999998888899999997653221 1122233445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.++++.+++.+..++++.+|||||+||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 174 (241)
T PRK10895 117 RANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL--LDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence 78899999999888899999999999999999999999999888 99999999987553
No 104
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.3e-25 Score=166.74 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc---------ccccceeeEecCCCCCCCCCCHHHHHHHHH-HhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~ 78 (156)
.|++++|+|+.. |++|+|.++|.++.. ...++.++|+||++.+++..|+.+|+.+.. ... +..
T Consensus 42 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~ 114 (242)
T PRK11124 42 SSLLRVLNLLEM----PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLS 114 (242)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCC
Confidence 377888888876 589999999998621 123457899999999899999999986432 111 122
Q ss_pred HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
......++.++++.+++.+..++.+.+||||||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 115 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lli--lDEPt~~LD~~~~ 177 (242)
T PRK11124 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLL--FDEPTAALDPEIT 177 (242)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCcCCHHHH
Confidence 23334568899999999888899999999999999999999999999888 9999999998754
No 105
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.8e-25 Score=171.04 Aligned_cols=126 Identities=19% Similarity=0.162 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++. .+...|+.+|+.+....+ .....
T Consensus 47 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~ 119 (287)
T PRK13641 47 STLMQHFNALLK----PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED 119 (287)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHH
Confidence 378888888887 4899999999987421 23456899999963 233579999997654322 12334
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+++.++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 120 ~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLl--LDEPt~gLD~~~~ 181 (287)
T PRK13641 120 EAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC--LDEPAAGLDPEGR 181 (287)
T ss_pred HHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCCCCCCHHHH
Confidence 4556788999999997 67899999999999999999999999999888 9999999998743
No 106
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=8.2e-25 Score=164.94 Aligned_cols=128 Identities=22% Similarity=0.244 Sum_probs=104.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.+++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++..|+.+|+.+...... .....+.
T Consensus 45 StLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~ 118 (220)
T TIGR02982 45 TTLLTLIGGLRS----VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEA 118 (220)
T ss_pred HHHHHHHhCCCC----CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHH
Confidence 367888888876 5899999999987531 235679999999988888999999987543321 1223344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ill--lDEP~~~LD~~~~~ 178 (220)
T TIGR02982 119 RERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVL--ADEPTAALDSKSGR 178 (220)
T ss_pred HHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCcCCHHHHH
Confidence 5678899999999988899999999999999999999999999988 99999999987643
No 107
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=7.6e-25 Score=165.01 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=99.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++.... .++.++|+||++.+++.+|+.+|+.+...... .....+
T Consensus 40 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~ 110 (222)
T cd03224 40 TTLLKTIMGLLP----PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKA 110 (222)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHH
Confidence 367888888876 58999999999875321 24568999999988999999999987643321 112334
Q ss_pred HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++++.+ ++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 111 ~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 168 (222)
T cd03224 111 RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLL--LDEPSEGLAPKIV 168 (222)
T ss_pred HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCcccCCHHHH
Confidence 566778888 57777899999999999999999999999999998 9999999997743
No 108
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=166.86 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc----------------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhh
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----------------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK 72 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----------------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~ 72 (156)
.|++++|+|++. |++|+|+++|.++.. ...++.++|+||++.+++..|+.||+.+.....
T Consensus 45 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~ 120 (257)
T PRK10619 45 STFLRCINFLEK----PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 120 (257)
T ss_pred HHHHHHHhCCCC----CCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh
Confidence 367888888876 589999999988742 123467899999999888899999997643211
Q ss_pred cccCCcHHHHHHHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 73 MDRNLHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
. ........+++.++++.+++.+.. ++++.+||||||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 121 ~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 188 (257)
T PRK10619 121 L--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL--FDEPTSALDPELV 188 (257)
T ss_pred C--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 1 122334456788999999998764 88899999999999999999999999888 9999999998754
No 109
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.4e-24 Score=163.99 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+++++|+|+.. |++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+..... ........+.+.
T Consensus 39 StLl~~l~G~~~----p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~ 111 (235)
T cd03299 39 SVLLETIAGFIK----PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVL 111 (235)
T ss_pred HHHHHHHhCCcC----CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 367888888877 5899999999987542 23567999999998888899999997654322 112233445678
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||+||+||++||+|++.+|++++ +||||+|+|+.++
T Consensus 112 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~gLD~~~~ 165 (235)
T cd03299 112 EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL--LDEPFSALDVRTK 165 (235)
T ss_pred HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE--ECCCcccCCHHHH
Confidence 89999999988899999999999999999999999999888 9999999997754
No 110
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.1e-25 Score=165.73 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=94.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
|+.++|+|+.. |++|+|+++|.+..+. ..++.+.+|||++. +-|..|+.+.+......+ +.. +..
T Consensus 48 TL~r~l~Gl~~----p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~--~~~ 118 (252)
T COG1124 48 TLARLLAGLEK----PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLS--KSQ 118 (252)
T ss_pred HHHHHHhcccC----CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---Ccc--HHH
Confidence 45555556555 6999999999887643 24567899999974 468889999887655432 222 233
Q ss_pred HHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 84 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 84 ~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+++.++++.+||. .++++++.+|||||+||++|||||+.+|+++| +||||++||+.
T Consensus 119 ~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI--lDEptSaLD~s 175 (252)
T COG1124 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI--LDEPTSALDVS 175 (252)
T ss_pred HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE--ecCchhhhcHH
Confidence 4589999999997 46799999999999999999999999999888 99966666643
No 111
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.6e-25 Score=169.81 Aligned_cols=126 Identities=25% Similarity=0.232 Sum_probs=102.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++. .+...|+.+|+.+..... ........
T Consensus 42 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~ 114 (274)
T PRK13644 42 STLALHLNGLLR----PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIR 114 (274)
T ss_pred HHHHHHHhcCCC----CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHH
Confidence 367888888876 5899999999987531 23466999999975 356689999997654322 12344455
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.+++.+..++++.+||+|||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 115 ~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~gLD~~~~ 172 (274)
T PRK13644 115 KRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI--FDEVTSMLDPDSG 172 (274)
T ss_pred HHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 678899999999988899999999999999999999999999998 9999999998754
No 112
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=171.72 Aligned_cols=126 Identities=19% Similarity=0.155 Sum_probs=99.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc---------------------------ccccceeeEecCCC-CCCCCCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---------------------------NLMVKVSGFVPQHD-LTVDTLT 60 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---------------------------~~~~~~ig~v~Q~~-~~~~~lt 60 (156)
.|++++|+|++. |++|+|+++|.+... ...++.+||+||++ ..+...|
T Consensus 47 STLl~~L~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~t 122 (305)
T PRK13651 47 TTFIEHLNALLL----PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122 (305)
T ss_pred HHHHHHHhCCCC----CCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccccccc
Confidence 367788888776 589999999876421 12356789999985 2344579
Q ss_pred HHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 61 VHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 61 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
+.+++.|..... +.......+++.++++.++|. +..++++.+||||||||++||+||+.+|+++| |||||+|+|
T Consensus 123 v~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLl--LDEPt~~LD 197 (305)
T PRK13651 123 IEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLV--FDEPTAGLD 197 (305)
T ss_pred HHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCC
Confidence 999998764322 233445566789999999996 67899999999999999999999999999988 999999999
Q ss_pred chhh
Q psy16753 140 PISA 143 (156)
Q Consensus 140 ~~~~ 143 (156)
+.++
T Consensus 198 ~~~~ 201 (305)
T PRK13651 198 PQGV 201 (305)
T ss_pred HHHH
Confidence 8744
No 113
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=2.2e-24 Score=164.41 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEec-CCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~-Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|.++|.++.. ...++.++|++ |.+.+++.+|+.+++.+....+ ........+.
T Consensus 61 STLl~~i~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~ 133 (236)
T cd03267 61 TTTLKILSGLLQ----PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKR 133 (236)
T ss_pred HHHHHHHhCCcC----CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence 378888888877 489999999987642 23356789998 5566778899999987754432 1223334456
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..++++.+||+|||||+.||+|++.+|+++| +||||+|+|+.++
T Consensus 134 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~ 189 (236)
T cd03267 134 LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILF--LDEPTIGLDVVAQ 189 (236)
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence 7789999999888899999999999999999999999999888 9999999998743
No 114
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.9e-24 Score=163.23 Aligned_cols=127 Identities=24% Similarity=0.209 Sum_probs=104.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++.| ++|+|+++|.++... ..++.++|++|++.+++..|+.+|+.+....+ ........+.+.
T Consensus 40 STLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~ 112 (232)
T cd03300 40 TTLLRLIAGFETP----TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVA 112 (232)
T ss_pred HHHHHHHhcCCCC----CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 3788888888874 899999999987542 23456899999998888899999997654332 122334455778
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++.+++.+..++.+.+||+||+||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll--lDEP~~gLD~~~~~ 167 (232)
T cd03300 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL--LDEPLGALDLKLRK 167 (232)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence 89999999988999999999999999999999999999988 99999999977543
No 115
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=165.40 Aligned_cols=126 Identities=20% Similarity=0.243 Sum_probs=101.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+..... ... .....+++.
T Consensus 39 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~ 111 (232)
T PRK10771 39 STLLNLIAGFLT----PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLH 111 (232)
T ss_pred HHHHHHHhCCCC----CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHH
Confidence 367888888876 4899999999987532 12356899999998888899999997642111 011 123345688
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 112 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEP~~gLD~~~~ 165 (232)
T PRK10771 112 AIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL--LDEPFSALDPALR 165 (232)
T ss_pred HHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 99999999988899999999999999999999999999998 9999999998643
No 116
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.7e-24 Score=169.47 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=99.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.|++++|+|++. |++|+|+++|.++.. ...++.+||+||++ .++. .|+.+++.|..... +...
T Consensus 46 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~ 117 (288)
T PRK13643 46 STLLQHLNGLLQ----PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPK 117 (288)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCH
Confidence 367778888776 589999999998742 12356799999986 4444 69999998764322 2233
Q ss_pred HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+++.++++.+++. ...++.+.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~ill--LDEPt~gLD~~~~ 180 (288)
T PRK13643 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV--LDEPTAGLDPKAR 180 (288)
T ss_pred HHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEE--EECCccCCCHHHH
Confidence 44556788999999996 46789999999999999999999999999888 9999999998754
No 117
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.92 E-value=2.3e-24 Score=162.85 Aligned_cols=127 Identities=21% Similarity=0.189 Sum_probs=97.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++ .+++.+|+.+|+.+....... . ...
T Consensus 45 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~ 118 (228)
T cd03257 45 STLARAILGLLK----PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKK 118 (228)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHH
Confidence 367888888876 5899999999987532 2356799999998 456789999999765432211 1 111
Q ss_pred HHHHH-HHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERART-VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~-~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+. +.++++.+++. ...++++.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 181 (228)
T cd03257 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLI--ADEPTSALDVSVQ 181 (228)
T ss_pred HHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEE--ecCCCCCCCHHHH
Confidence 11122 35789999995 57789999999999999999999999999988 9999999998744
No 118
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=181.53 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++|+|+|++.|. |++|+|+++|.++.... .++.+||+||++.+++.+|+.+|+.+....+...........+
T Consensus 45 STLl~~l~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 122 (506)
T PRK13549 45 STLMKVLSGVYPHG--TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL 122 (506)
T ss_pred HHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH
Confidence 37888888887641 37999999999885421 2456999999998889999999997754321100112233445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll--LDEPt~~LD~~~~ 179 (506)
T PRK13549 123 RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLI--LDEPTASLTESET 179 (506)
T ss_pred HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence 78899999999888899999999999999999999999999888 9999999998744
No 119
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.92 E-value=1.5e-24 Score=161.10 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=99.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+++++|+|++. |++|+|.++|.++... ..++.++|++|+..+++..|+.+++.+..... . . . .+.+
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~--~-~-~~~~ 108 (198)
T TIGR01189 40 TTLLRILAGLLR----PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G--G-A-QRTI 108 (198)
T ss_pred HHHHHHHhCCCC----CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C--C-c-HHHH
Confidence 367888888876 4899999999987532 23456899999988888899999997654322 1 1 1 2357
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 163 (198)
T TIGR01189 109 EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI--LDEPTTALDKAGV 163 (198)
T ss_pred HHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence 788999999988899999999999999999999999999998 9999999997643
No 120
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-24 Score=165.79 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-------c--
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-------R-- 75 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-------~-- 75 (156)
.|++++|+|++. |++|+|.++|.++.... .+..++|+||++.+++.+|+.+|+.+....... .
T Consensus 45 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 120 (255)
T PRK11300 45 TTVFNCLTGFYK----PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT 120 (255)
T ss_pred HHHHHHHhCCcC----CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccc
Confidence 367888888876 58999999999875321 234578999999999999999999875321000 0
Q ss_pred ---CCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 76 ---NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 76 ---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..........+.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 189 (255)
T PRK11300 121 PAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM--LDEPAAGLNPKET 189 (255)
T ss_pred cccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCccCCCHHHH
Confidence 00111233467788999999888899999999999999999999999999988 9999999997744
No 121
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=2.6e-24 Score=165.21 Aligned_cols=126 Identities=22% Similarity=0.186 Sum_probs=102.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc----------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 73 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~ 73 (156)
|++++|+|+.. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+.....
T Consensus 41 TLl~~l~G~~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~- 115 (252)
T TIGR03005 41 TILRILMTLEP----IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV- 115 (252)
T ss_pred HHHHHHhCCCC----CCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh-
Confidence 67888888876 4899999999987421 23567999999998888899999997643211
Q ss_pred ccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.........+.+.++++.+++.+..++.+.+|||||+||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 116 -~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 182 (252)
T TIGR03005 116 -LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVML--FDEVTSALDPELV 182 (252)
T ss_pred -cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 112233344568899999999888899999999999999999999999999888 9999999998754
No 122
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.9e-24 Score=171.47 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=99.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-------------------cccceeeEecCCC--CCCCCCCHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------------------LMVKVSGFVPQHD--LTVDTLTVHEHMTLM 68 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------------------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~ 68 (156)
|++++|+|++. |++|+|+++|.++... ..++.++|+||++ .+++ .|+.+|+.++
T Consensus 67 TLl~~L~Gl~~----p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~ 141 (320)
T PRK13631 67 TLVTHFNGLIK----SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFG 141 (320)
T ss_pred HHHHHHhCCCC----CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhh
Confidence 67778888776 5899999999886421 2356799999987 3554 5999999776
Q ss_pred HHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 69 ARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.... ........+++.++++.+++. ...++.+.+||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 142 ~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL--LDEPtsgLD~~~~ 212 (320)
T PRK13631 142 PVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI--FDEPTAGLDPKGE 212 (320)
T ss_pred HHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCccCCCHHHH
Confidence 4321 123444556788999999996 57899999999999999999999999999998 9999999998754
No 123
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.5e-24 Score=169.79 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=101.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---c----ccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L----MVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~----~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
+++++|+|++.+.-.+++|+|.++|.++... . .++.++|+||++ .+.+.+++.+++......+ ......
T Consensus 48 TL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~ 125 (326)
T PRK11022 48 VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKK 125 (326)
T ss_pred HHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHH
Confidence 6778888877632224899999999997532 1 124689999997 4678889988876554332 122344
Q ss_pred HHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 81 ERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
...+++.++++.++|.+ ..++++++|||||||||+||+||+.+|+++| +||||+|+|+.++.
T Consensus 126 ~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli--lDEPts~LD~~~~~ 190 (326)
T PRK11022 126 TRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI--ADEPTTALDVTIQA 190 (326)
T ss_pred HHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCCHHHHH
Confidence 55677889999999964 4688999999999999999999999999888 99999999987554
No 124
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-24 Score=170.36 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=100.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
+++++|+|++. |++|+|.++|.++... ..++.++|+||++ .+.+.+++.+++......+. ......
T Consensus 56 TLl~~l~gl~~----p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~ 129 (327)
T PRK11308 56 TLARLLTMIET----PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAE 129 (327)
T ss_pred HHHHHHHcCCC----CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHH
Confidence 56677777765 5899999999997542 2346799999997 46788899998876543321 223444
Q ss_pred HHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++.+ ..++++++||||||||++||+||+.+|+++| +||||+|||+.++.
T Consensus 130 ~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLi--lDEPts~LD~~~~~ 191 (327)
T PRK11308 130 RREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVV--ADEPVSALDVSVQA 191 (327)
T ss_pred HHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEE--EECCCccCCHHHHH
Confidence 5567899999999964 6799999999999999999999999999888 99999999977543
No 125
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-24 Score=168.53 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=101.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-----ccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++.. ...+..+||+||++. .+...|+.+|+.+..... .......
T Consensus 46 STLl~~i~Gl~~----p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 118 (283)
T PRK13636 46 STLFQNLNGILK----PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEV 118 (283)
T ss_pred HHHHHHHhcCCC----CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHH
Confidence 367888888877 489999999998741 123567999999973 334579999997754321 2233344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 119 ~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi--lDEPt~gLD~~~~~ 178 (283)
T PRK13636 119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV--LDEPTAGLDPMGVS 178 (283)
T ss_pred HHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHHH
Confidence 5678899999999988999999999999999999999999999888 99999999987553
No 126
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.92 E-value=1.7e-24 Score=161.34 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=99.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.++|.++.. ...++.++|++|++.+++..|+.+|+.+.... . ..+++
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~ 106 (201)
T cd03231 40 TTLLRILAGLSP----PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQV 106 (201)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHH
Confidence 367888888876 489999999988643 23456789999998888889999998764211 0 23467
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 107 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~~LD~~~~ 161 (201)
T cd03231 107 EEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI--LDEPTTALDKAGV 161 (201)
T ss_pred HHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence 889999999888899999999999999999999999999888 9999999998743
No 127
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=180.71 Aligned_cols=129 Identities=21% Similarity=0.180 Sum_probs=103.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~ 83 (156)
.|++|+|+|++. |++|+|+++|.++... ..++.++|++|++.+++.+|+.+++.++...+.. .........
T Consensus 44 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 119 (501)
T PRK10762 44 STMMKVLTGIYT----RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY 119 (501)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH
Confidence 378888888877 4899999999987532 1245689999999888999999999775322110 011233344
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 120 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~ 177 (501)
T PRK10762 120 AEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII--MDEPTDALTDTET 177 (501)
T ss_pred HHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcCCCCHHHH
Confidence 578899999999988899999999999999999999999999988 9999999998744
No 128
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=168.15 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc----ccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----NLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++. |++|+|+++|.++.. ...++.+||+||++. .+...++.+++.+..... ........
T Consensus 50 STLl~~l~Gl~~----~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~ 122 (280)
T PRK13633 50 STIAKHMNALLI----PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIR 122 (280)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHH
Confidence 367888888877 489999999998753 123567999999974 233468999998764322 12333445
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~gLD~~~~~ 181 (280)
T PRK13633 123 ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII--FDEPTAMLDPSGRR 181 (280)
T ss_pred HHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence 678899999999988999999999999999999999999999988 99999999987543
No 129
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=167.04 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=98.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|.++. ..++.++|++|++.+++..|+.+|+.+... . ....++.+
T Consensus 52 STLlk~l~Gl~~----p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~ 116 (257)
T PRK11247 52 STLLRLLAGLET----PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQ 116 (257)
T ss_pred HHHHHHHhcCCC----CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHH
Confidence 367888888876 48999999998764 235669999999988888999999876421 0 12346778
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll--LDEPt~~LD~~~~ 169 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL--LDEPLGALDALTR 169 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence 9999999988899999999999999999999999999998 9999999998754
No 130
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=3.9e-24 Score=165.53 Aligned_cols=126 Identities=18% Similarity=0.164 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++ .+++..|+.+++.+..... ......
T Consensus 51 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~ 124 (265)
T TIGR02769 51 STLARLLLGLEK----PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDES 124 (265)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHH
Confidence 368888888877 4899999999987532 1345699999996 3567789999987653221 112233
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
...+++.++++.+++. ...++++.+||||||||++||+|++.+|+++| +||||+|+|+.+
T Consensus 125 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~ill--LDEPt~~LD~~~ 185 (265)
T TIGR02769 125 EQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV--LDEAVSNLDMVL 185 (265)
T ss_pred HHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence 3446788999999996 56789999999999999999999999999888 999999999874
No 131
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.91 E-value=1.5e-24 Score=184.99 Aligned_cols=133 Identities=35% Similarity=0.528 Sum_probs=110.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|...+.. ..+|+|.++|.++.....++.+||++|++.+++.+||+||+.|....+.+......+..+++++
T Consensus 65 STLL~~L~g~~~~~~-~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~ 143 (617)
T TIGR00955 65 TTLMNALAFRSPKGV-KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE 143 (617)
T ss_pred HHHHHHHhCCCCCCC-cceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 478999999876520 1479999999998655556779999999999999999999999876654333344455668999
Q ss_pred HHHHcCCCccccCccC------cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLN------VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~------~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..|+.++ +||||||||++||++|+.+|++++ +||||+|+|+.++.
T Consensus 144 ~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll--lDEPtsgLD~~~~~ 203 (617)
T TIGR00955 144 VLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF--CDEPTSGLDSFMAY 203 (617)
T ss_pred HHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE--eeCCCcchhHHHHH
Confidence 9999999988888876 599999999999999999999887 99999999987544
No 132
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=168.56 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=102.6
Q ss_pred HHHHHHHhhhhhcCCCCcc---eEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVD---GQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~---G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|+..| ++ |+|+++|.++... ..++.+||+||++. .++..|+.+|+.+..... ......
T Consensus 47 STLl~~l~G~~~p----~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~ 119 (282)
T PRK13640 47 STISKLINGLLLP----DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPE 119 (282)
T ss_pred HHHHHHHhcccCC----CCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHH
Confidence 3678888888875 56 9999999988532 23467899999974 567789999997653322 223334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++.+..++++.+||+||+||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 120 ~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~lll--lDEPt~gLD~~~~~ 180 (282)
T PRK13640 120 MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII--LDESTSMLDPAGKE 180 (282)
T ss_pred HHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence 45678899999999988999999999999999999999999999988 99999999987543
No 133
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-24 Score=167.58 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=102.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++++|+|++. |++|+|+++|.++... ..++.++|++|++. .++..|+.+|+.+..... ........+
T Consensus 47 STLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~ 119 (277)
T PRK13642 47 STTARLIDGLFE----EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIK 119 (277)
T ss_pred HHHHHHHhcCCC----CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHH
Confidence 367788888876 5899999999987532 23567999999974 567789999997654321 122333445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll--lDEPt~~LD~~~~~ 177 (277)
T PRK13642 120 RVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII--LDESTSMLDPTGRQ 177 (277)
T ss_pred HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence 78899999999888899999999999999999999999999888 99999999987543
No 134
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.8e-24 Score=166.68 Aligned_cols=126 Identities=25% Similarity=0.289 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|++|++. .+...|+.+|+.+..... ........+
T Consensus 44 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 116 (277)
T PRK13652 44 STLFRHFNGILK----PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAH 116 (277)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHH
Confidence 367888888776 5899999999987532 33566899999973 344679999997654321 223344456
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli--lDEPt~gLD~~~~ 173 (277)
T PRK13652 117 RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV--LDEPTAGLDPQGV 173 (277)
T ss_pred HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 78899999999988899999999999999999999999999888 9999999997643
No 135
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.91 E-value=4.1e-24 Score=162.21 Aligned_cols=129 Identities=16% Similarity=0.097 Sum_probs=99.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccc-cceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLM-VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~-~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++.|...+++|+|+++|.++..... ++.++|++|++. +++..|+.+++.+..... ........++
T Consensus 26 STLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~~~ 102 (230)
T TIGR02770 26 SLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL---GKLSKQARAL 102 (230)
T ss_pred HHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc---CccHHHHHHH
Confidence 3788888888774111279999999998754322 356899999974 456789999886643321 1112334567
Q ss_pred HHHHHHHcCCC---ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 86 VDALLKELGLL---KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 86 ~~~~l~~~~L~---~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+.++++.+++. +..++++.+||+|||||++||+|++.+|+++| |||||+|+|+.+
T Consensus 103 ~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vll--LDEPt~~LD~~~ 160 (230)
T TIGR02770 103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLI--ADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHH
Confidence 88999999997 56789999999999999999999999999888 999999999764
No 136
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.8e-24 Score=163.05 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=102.7
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++.+. ..|++|+|.++|.++... .+++.++|+||++.+++..|+.+|+.+....... ........+
T Consensus 43 STLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~ 121 (250)
T PRK14247 43 STLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQE 121 (250)
T ss_pred HHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHH
Confidence 37889999987641 014799999999987532 3456799999998888889999999876432210 012233445
Q ss_pred HHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++++.+++.+ ..++.+.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--LDEP~~~LD~~~~ 182 (250)
T PRK14247 122 RVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL--ADEPTANLDPENT 182 (250)
T ss_pred HHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence 7889999999853 4688999999999999999999999999998 9999999998744
No 137
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.5e-24 Score=160.22 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|++|+..+++..|+.+++.+..... . ....+
T Consensus 41 STLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~ 108 (200)
T PRK13540 41 TTLLKLIAGLLN----PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGI 108 (200)
T ss_pred HHHHHHHhcCCC----CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHH
Confidence 367788888776 5899999999987532 33567999999988888899999987653211 1 12367
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+..++++.+||+||+||++||+|++.+|+++| +||||+|+|+.+..
T Consensus 109 ~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li--lDEP~~~LD~~~~~ 164 (200)
T PRK13540 109 TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL--LDEPLVALDELSLL 164 (200)
T ss_pred HHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCCcccCHHHHH
Confidence 889999999877788999999999999999999999999888 99999999977443
No 138
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=3.6e-24 Score=165.21 Aligned_cols=126 Identities=21% Similarity=0.215 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++..|+.+++.+..... ........+.
T Consensus 42 STLl~~i~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~ 114 (258)
T PRK13548 42 STLLRALSGELS----PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDAL 114 (258)
T ss_pred HHHHHHHhCCCC----CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHH
Confidence 367888888876 4899999999987532 23456899999988878889999987653221 1112233456
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh------cCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS------QDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~------~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..++.+.+||||||||++||+||+ .+|+++| |||||+|+|+.++
T Consensus 115 ~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll--LDEPt~~LD~~~~ 176 (258)
T PRK13548 115 VAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL--LDEPTSALDLAHQ 176 (258)
T ss_pred HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE--EeCCcccCCHHHH
Confidence 788999999988889999999999999999999999 5999888 9999999998754
No 139
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4e-24 Score=166.62 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc-------ccccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK-------NLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.|++++|+|++. |++|+|.++|.++.. ...++.++|++|++ .+++ .|+.+|+.+..... ....
T Consensus 47 STLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~ 118 (280)
T PRK13649 47 STIMQLLNGLHV----PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQ 118 (280)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCH
Confidence 367888888876 489999999998743 12346689999996 3444 69999998654322 1223
Q ss_pred HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+.+.++++.+++. ...++++.+||||||||+.||+||+.+|+++| |||||+|+|+.++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~ 181 (280)
T PRK13649 119 EEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILV--LDEPTAGLDPKGR 181 (280)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 33445678899999997 46789999999999999999999999999988 9999999998743
No 140
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=3.6e-24 Score=160.94 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=99.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
+++++|+|++. |++|+|.++|.++.....++.++|++|.+.+++..|+.+|+.+....+ .. ...+.+.++
T Consensus 52 TLl~~i~G~~~----~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~ 121 (214)
T PRK13543 52 TLLRVLAGLLH----VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSA 121 (214)
T ss_pred HHHHHHhCCCC----CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHH
Confidence 67788888776 489999999998764333456899999988888889999987654322 11 123456788
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 122 l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 173 (214)
T PRK13543 122 LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL--LDEPYANLDLEGI 173 (214)
T ss_pred HHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 999999888899999999999999999999999999888 9999999997743
No 141
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.7e-24 Score=166.17 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=98.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCC-CCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.. +...++.+|+.+..... .......
T Consensus 41 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~ 113 (271)
T PRK13638 41 STLFMNLSGLLR----PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEI 113 (271)
T ss_pred HHHHHHHcCCCC----CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHH
Confidence 367888888877 5899999999987411 234669999999753 34557888887653322 1223334
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll--LDEPt~~LD~~~~ 172 (271)
T PRK13638 114 TRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL--LDEPTAGLDPAGR 172 (271)
T ss_pred HHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 4567889999999888899999999999999999999999999998 9999999998754
No 142
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-24 Score=166.50 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|+..+++.+|+.+|+.+........ ........+
T Consensus 51 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 126 (265)
T PRK10575 51 STLLKMLGRHQP----PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE 126 (265)
T ss_pred HHHHHHHcCCCC----CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHH
Confidence 367888888876 5899999999987432 23456899999988888899999997642111000 011123345
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 127 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 183 (265)
T PRK10575 127 KVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL--LDEPTSALDIAHQ 183 (265)
T ss_pred HHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 67899999999888899999999999999999999999999998 9999999998754
No 143
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=3.1e-24 Score=160.57 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=99.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+.. |++|+|+++|.++.....++.++|++|+..+++..|+.+|+.+....+ .. ..+.+.+
T Consensus 42 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~ 110 (207)
T PRK13539 42 TTLLRLIAGLLP----PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAA 110 (207)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHH
Confidence 367888888776 489999999988642224567899999888888899999987654332 11 1234788
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++++||+|||||++||+|++.+|+++| +||||+|+|+.+..
T Consensus 111 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~ 164 (207)
T PRK13539 111 ALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWI--LDEPTAALDAAAVA 164 (207)
T ss_pred HHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 9999999887889999999999999999999999999888 99999999977443
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=165.34 Aligned_cols=126 Identities=21% Similarity=0.173 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++. .++..++.+|+.+..... ........+
T Consensus 49 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~ 121 (269)
T PRK13648 49 STIAKLMIGIEK----VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHR 121 (269)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHH
Confidence 367888888876 4899999999987532 34567999999974 677789999987654321 122333445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 122 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEPt~~LD~~~~ 178 (269)
T PRK13648 122 RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII--LDEATSMLDPDAR 178 (269)
T ss_pred HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 67889999999988899999999999999999999999999998 9999999997743
No 145
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3e-24 Score=165.20 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHH-hhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||+..+++.+|+.+++.++.. .............+
T Consensus 42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~ 117 (255)
T PRK11231 42 STLLKCFARLLT----PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA 117 (255)
T ss_pred HHHHHHHhCCcC----CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHH
Confidence 368888888876 4899999999987432 234568999999888888899999876421 10000111123345
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+|||||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 118 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 174 (255)
T PRK11231 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL--LDEPTTYLDINHQ 174 (255)
T ss_pred HHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 67889999999888899999999999999999999999999988 9999999998744
No 146
>KOG0061|consensus
Probab=99.91 E-value=3.7e-24 Score=182.15 Aligned_cols=133 Identities=35% Similarity=0.530 Sum_probs=118.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|...+. ...+|+|.+||+......+++..|||.|+..+++.+||+|++.|.+.++.+......+..+++++
T Consensus 70 tTLL~~Lagr~~~~-~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~ 148 (613)
T KOG0061|consen 70 TTLLNALAGRLNGG-LKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEE 148 (613)
T ss_pred HHHHHHHhccccCC-CcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 47899999999852 14799999999877766778889999999999999999999999998887765666777889999
Q ss_pred HHHHcCCCccccCccC-----cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLN-----VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~-----~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.++.|+.++ .+||||||||+||.-++++|.+++ +||||.|+|+.++.
T Consensus 149 vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLf--lDEPTSGLDS~sA~ 207 (613)
T KOG0061|consen 149 VISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILF--LDEPTSGLDSFSAL 207 (613)
T ss_pred HHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEE--ecCCCCCcchhhHH
Confidence 9999999999999986 599999999999999999999887 99999999998774
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.8e-24 Score=162.89 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=102.1
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|. ..|++|+|.++|.++.. ...++.++|++|++.+++..|+.+|+.+....+. .......
T Consensus 44 STLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~ 121 (258)
T PRK14241 44 STVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDL 121 (258)
T ss_pred HHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHH
Confidence 37888999987641 01379999999998742 1335679999999988888999999977543321 1122334
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.++++.+++. +..++.+.+||||||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 185 (258)
T PRK14241 122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL--MDEPCSALDPISTL 185 (258)
T ss_pred HHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence 45678889999884 45688899999999999999999999999998 99999999987543
No 148
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.2e-24 Score=178.41 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=103.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... .+++.++|++|++.+++.+|+.+|+.+................+
T Consensus 44 STLl~~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 119 (501)
T PRK11288 44 STLLKILSGNYQ----PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY 119 (501)
T ss_pred HHHHHHHhCCCC----CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH
Confidence 378888888876 4899999999987532 23567999999998889999999998743211000012334456
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.+.
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 176 (501)
T PRK11288 120 EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA--FDEPTSSLSAREI 176 (501)
T ss_pred HHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE--EcCCCCCCCHHHH
Confidence 78899999999877899999999999999999999999999888 9999999998744
No 149
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=8.1e-24 Score=161.30 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=102.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++..|+.+|+.+....+ ........+.+.
T Consensus 40 STLl~~i~G~~~----~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~ 112 (237)
T TIGR00968 40 STLLRIIAGLEQ----PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVE 112 (237)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHH
Confidence 367888888876 5899999999987542 23456899999998888899999997654332 112223345678
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++.+.+||+||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll--lDEP~~~LD~~~~ 166 (237)
T TIGR00968 113 ELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL--LDEPFGALDAKVR 166 (237)
T ss_pred HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 99999999888899999999999999999999999999988 9999999997654
No 150
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.4e-24 Score=162.89 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=99.7
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|. -.|++|+|+++|.++.. ...++.++|++|++..++ .|+.+|+.+...... .......
T Consensus 47 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~ 123 (254)
T PRK14273 47 STFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKL 123 (254)
T ss_pred HHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHH
Confidence 37888899988751 01258999999998742 123567999999988775 899999987643221 1122234
Q ss_pred HHHHHHHHHHcCC----CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGL----LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L----~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++ .+..++++.+||||||||++|||||+.+|+++| |||||+|+|+.+.
T Consensus 124 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 186 (254)
T PRK14273 124 DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL--MDEPTSALDPIST 186 (254)
T ss_pred HHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcccCHHHH
Confidence 4567888999887 345688999999999999999999999999888 9999999998744
No 151
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9e-24 Score=168.32 Aligned_cols=134 Identities=11% Similarity=0.064 Sum_probs=101.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccC---
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRN--- 76 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~--- 76 (156)
.|++++|+|+..+...+++|+|+|+|+++.... .++.++|+||++. +.+..|+.+++......+....
T Consensus 47 STLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~ 126 (330)
T PRK15093 47 SLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWW 126 (330)
T ss_pred HHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhcccccc
Confidence 378888999886433358999999999875321 1246999999975 4677899999875422111000
Q ss_pred CcHHHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 77 LHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.......+++.++++.++|.+ ..++++.+|||||||||+||+||+.+|+++| +||||+|||+.++.
T Consensus 127 ~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli--lDEPts~LD~~~~~ 195 (330)
T PRK15093 127 QRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLI--ADEPTNAMEPTTQA 195 (330)
T ss_pred ccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEE--EeCCCCcCCHHHHH
Confidence 011234467889999999974 3588999999999999999999999999888 99999999987553
No 152
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=3.8e-24 Score=162.14 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=98.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++..|+.+++.+....+ ... ..+
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~ 109 (230)
T TIGR03410 40 TTLLKTLMGLLP----VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRK 109 (230)
T ss_pred HHHHHHHhCCCC----CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHH
Confidence 367888888877 4899999999987532 12456899999998888899999997764332 111 123
Q ss_pred HHHHHHHHcC-CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~-L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
...++++.++ +.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+..
T Consensus 110 ~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ill--lDEPt~~LD~~~~~ 168 (230)
T TIGR03410 110 IPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLL--LDEPTEGIQPSIIK 168 (230)
T ss_pred HHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHHH
Confidence 4567777776 5667789999999999999999999999999998 99999999987543
No 153
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.4e-24 Score=163.06 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+.. .|++|+|.++|.++... ..++.++|+||++.+++ .|+.+|+.+....+ .......
T Consensus 52 STLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~ 127 (258)
T PRK14268 52 STFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDL 127 (258)
T ss_pred HHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHH
Confidence 378899999876421 13799999999987421 23566999999988887 89999998764332 1223333
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+|||||+||++||+||+.+|+++| +||||+|+|+.++
T Consensus 128 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 190 (258)
T PRK14268 128 DGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL--FDEPTSALDPIST 190 (258)
T ss_pred HHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcccCHHHH
Confidence 45678899999883 45688899999999999999999999999888 9999999998754
No 154
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=5.4e-24 Score=160.71 Aligned_cols=120 Identities=17% Similarity=0.258 Sum_probs=99.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|.++.... .+.++|+||++.+++..|+.+|+.+..... ... ..++.+
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~ 107 (223)
T TIGR03740 40 STLLKMITGILR----PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDE 107 (223)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHH
Confidence 378888888876 58999999999875332 346899999998888899999997654332 111 245778
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++.+++.+..++.+.+||+||+||++||+|++.+|+++| +||||+|+|+.+
T Consensus 108 ~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll--lDEP~~~LD~~~ 159 (223)
T TIGR03740 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI--LDEPTNGLDPIG 159 (223)
T ss_pred HHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE--ECCCccCCCHHH
Confidence 8999999988899999999999999999999999999988 999999999774
No 155
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.6e-24 Score=165.15 Aligned_cols=127 Identities=24% Similarity=0.265 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++. |++|+|+++|.++... .+++.++|+||++. .+...|+.+++.+..... .......
T Consensus 42 STLl~~i~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~ 114 (275)
T PRK13639 42 STLFLHFNGILK----PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEV 114 (275)
T ss_pred HHHHHHHhCCCC----CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHH
Confidence 367888888776 5899999999987421 23567999999963 334569999997653221 1223344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++++.+|||||+||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 115 ~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~gLD~~~~~ 174 (275)
T PRK13639 115 EKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV--LDEPTSGLDPMGAS 174 (275)
T ss_pred HHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHHH
Confidence 5678899999999988899999999999999999999999999988 99999999987543
No 156
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.91 E-value=5.5e-24 Score=164.35 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=101.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-----c
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-----R 75 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~ 75 (156)
.|++++|+|++.|. .+++|+|+++|.++... ..++.++|+||++.+++.+|+.+|+.+....... .
T Consensus 44 STLl~~i~G~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 122 (262)
T PRK09984 44 STLLRHLSGLITGD-KSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCF 122 (262)
T ss_pred HHHHHHHhccCCCC-CCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhc
Confidence 37888888888751 01369999999987431 2245689999999888889999999764321000 0
Q ss_pred CCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 76 NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.........++.++++.+++.+..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 123 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 188 (262)
T PRK09984 123 SWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL--ADEPIASLDPESA 188 (262)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE--ecCccccCCHHHH
Confidence 01112334578899999999888899999999999999999999999999888 9999999997744
No 157
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=161.21 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=99.7
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..... .|++|+|.++|.++.. ...++.++|++|++.+++ .|+.+|+.+....+. .......
T Consensus 46 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~ 122 (253)
T PRK14242 46 STFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYL 122 (253)
T ss_pred HHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHH
Confidence 378899999864110 1479999999998742 123567999999988887 599999987643321 1122234
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+ ..++.+.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 185 (253)
T PRK14242 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLL--MDEPASALDPIAT 185 (253)
T ss_pred HHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 567788899999843 4578899999999999999999999999888 9999999998754
No 158
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=7.2e-24 Score=163.21 Aligned_cols=129 Identities=22% Similarity=0.176 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhh-cccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++..++..|+.+|+.+..... ...........+
T Consensus 41 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 116 (256)
T TIGR03873 41 STLLRLLAGALR----PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAA 116 (256)
T ss_pred HHHHHHHcCCCC----CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHH
Confidence 378888888877 4899999999987532 23456899999987777889999997642111 000111122345
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||+||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~ 173 (256)
T TIGR03873 117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL--LDEPTNHLDVRAQ 173 (256)
T ss_pred HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHHHH
Confidence 68899999999888899999999999999999999999999998 9999999998744
No 159
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.3e-24 Score=178.13 Aligned_cols=129 Identities=17% Similarity=0.125 Sum_probs=102.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhh-cccC---CcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRN---LHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~-~~~~---~~~~ 80 (156)
.|++|+|+|++. |++|+|+++|.++.... .++.++|+||++.+++.+|+.+|+.+..... .... ....
T Consensus 45 STLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 120 (510)
T PRK09700 45 STLMKVLSGIHE----PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWR 120 (510)
T ss_pred HHHHHHHcCCcC----CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHH
Confidence 378888888887 48999999999875421 2346999999998889999999987643110 0001 1123
Q ss_pred HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 121 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll--LDEPt~~LD~~~~ 181 (510)
T PRK09700 121 EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVII--MDEPTSSLTNKEV 181 (510)
T ss_pred HHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence 344678899999999988899999999999999999999999999888 9999999998754
No 160
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-23 Score=161.61 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=101.3
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|. ..|++|+|+++|.++.. ...++.++|++|++.+++..|+.+|+.+....+.. .......
T Consensus 44 STLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~ 122 (253)
T PRK14267 44 STLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKEL 122 (253)
T ss_pred HHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHH
Confidence 37888899987741 01259999999998751 12356799999999888899999999875432210 0122333
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 185 (253)
T PRK14267 123 DERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILL--MDEPTANIDPVGT 185 (253)
T ss_pred HHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence 45678889999874 34688899999999999999999999999988 9999999998754
No 161
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=165.15 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++... ..+..++|+||++.+++..|+.+++.+....... .........+
T Consensus 47 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 122 (265)
T PRK10253 47 STLLRTLSRLMT----PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEE 122 (265)
T ss_pred HHHHHHHcCCCC----CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHH
Confidence 367888888876 4899999999987532 2345689999999888889999998754211000 0001122345
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~gLD~~~~ 179 (265)
T PRK10253 123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML--LDEPTTWLDISHQ 179 (265)
T ss_pred HHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence 67889999999888899999999999999999999999999998 9999999997744
No 162
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.4e-24 Score=176.89 Aligned_cols=129 Identities=17% Similarity=0.084 Sum_probs=101.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++.+|+.+|+.+................+
T Consensus 38 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 113 (491)
T PRK10982 38 STLLKCLFGIYQ----KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR 113 (491)
T ss_pred HHHHHHHcCCCC----CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHH
Confidence 367888888876 4899999999987532 22456999999998888999999987643111000012233445
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++....++++.+|||||||||+||+||+.+|+++| |||||+|+|+.+.
T Consensus 114 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll--LDEPt~~LD~~~~ 170 (491)
T PRK10982 114 DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI--MDEPTSSLTEKEV 170 (491)
T ss_pred HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCCHHHH
Confidence 78899999999888899999999999999999999999999888 9999999998744
No 163
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.91 E-value=1.2e-23 Score=163.11 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++. +++..|+.+++.+...... ........
T Consensus 53 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~ 126 (267)
T PRK15112 53 STLAKMLAGMIE----PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQRE 126 (267)
T ss_pred HHHHHHHhCCCC----CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHH
Confidence 367888888877 4899999999987532 22356899999974 5677899998876543221 12233344
Q ss_pred HHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 84 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 84 ~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.+.++++.+++. ...++++.+||+|||||++||+|++.+|+++| |||||+|+|+.+..
T Consensus 127 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~~ 186 (267)
T PRK15112 127 KQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVII--ADEALASLDMSMRS 186 (267)
T ss_pred HHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEE--EcCCcccCCHHHHH
Confidence 5688999999995 56788899999999999999999999999998 99999999987543
No 164
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.91 E-value=9.8e-24 Score=159.70 Aligned_cols=124 Identities=13% Similarity=0.154 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.++|++|++.+++ .|+.+|+.+....+. .. ...++
T Consensus 47 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~--~~~~~ 116 (225)
T PRK10247 47 STLLKIVASLIS----PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQ--PDPAI 116 (225)
T ss_pred HHHHHHHhcccC----CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---CC--hHHHH
Confidence 367888888776 5899999999987532 23467899999988776 499999976533221 11 12345
Q ss_pred HHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++. ...++++.+||+||+||++||+||+.+|+++| +||||+|+|+.+..
T Consensus 117 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 174 (225)
T PRK10247 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL--LDEITSALDESNKH 174 (225)
T ss_pred HHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 77899999996 46789999999999999999999999999998 99999999987544
No 165
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=7.4e-24 Score=196.45 Aligned_cols=126 Identities=29% Similarity=0.447 Sum_probs=106.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++|+|+|++. |++|+|+++|.++... ..++.+||+||++.+++.+|+.|++.+..+.+ +.......+++
T Consensus 970 STLLkiLaGLl~----PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v 1042 (2272)
T TIGR01257 970 TTTLSILTGLLP----PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEM 1042 (2272)
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 367888888877 5899999999998532 34567999999999999999999998876543 22333445678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++++.++|.+..++++++||||||||++||+||+.+|+++| |||||+|+||.++
T Consensus 1043 ~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL--LDEPTSGLDp~sr 1097 (2272)
T TIGR01257 1043 EAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV--LDEPTSGVDPYSR 1097 (2272)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCCcCCCHHHH
Confidence 899999999998999999999999999999999999999998 9999999998744
No 166
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=160.61 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=100.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++.+. +|++|+|+++|+++... ..++.++|+||++.+++ .|+.+|+.+....+. .........++
T Consensus 42 STLl~~l~Gl~~~~-~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~ 118 (246)
T PRK14269 42 STFLRCFNRMNDKI-AKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEAL 118 (246)
T ss_pred HHHHHHHhcccCCC-CCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHH
Confidence 37889999987521 25899999999987532 23566899999988886 699999987543321 00012234456
Q ss_pred HHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++. +..++.+.+||+|||||++||||++.+|+++| +||||+|+|+.+..
T Consensus 119 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEP~~~LD~~~~~ 179 (246)
T PRK14269 119 VVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLL--LDEPTSALDPISSG 179 (246)
T ss_pred HHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence 78899999995 34578889999999999999999999999998 99999999987543
No 167
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.3e-24 Score=161.70 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=97.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+|+.+..... ......+
T Consensus 45 STLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~ 115 (237)
T PRK11614 45 TTLLGTLCGDPR----ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQE 115 (237)
T ss_pred HHHHHHHcCCCC----CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHH
Confidence 367888888876 5899999999987542 13456999999998888899999997653211 1112234
Q ss_pred HHHHHHHHc-CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKEL-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++++.+ ++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 116 ~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill--lDEPt~~LD~~~~ 173 (237)
T PRK11614 116 RIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL--LDEPSLGLAPIII 173 (237)
T ss_pred HHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE--EcCccccCCHHHH
Confidence 566777777 47766788999999999999999999999999998 9999999998743
No 168
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.9e-23 Score=159.43 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+. ..|++|+|+++|.++... ..++.++|+||++.+++..|+.+|+.+....+. .......
T Consensus 44 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~ 121 (252)
T PRK14256 44 STVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEA 121 (252)
T ss_pred HHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHH
Confidence 47889999987521 013689999999987531 235669999999988888999999976543221 1122233
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.. ..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEP~~gLD~~~~ 184 (252)
T PRK14256 122 DEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVIL--MDEPASALDPIST 184 (252)
T ss_pred HHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 456788899999853 4577899999999999999999999999888 9999999998744
No 169
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.3e-24 Score=165.32 Aligned_cols=127 Identities=23% Similarity=0.219 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--------ccccceeeEecCCCCC-CCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--------NLMVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--------~~~~~~ig~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.|++++|+|++. |++|+|+++|.++.. ...++.++|++|++.. +...|+.+|+.+..... ....
T Consensus 51 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~ 123 (289)
T PRK13645 51 STMIQLTNGLII----SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENK 123 (289)
T ss_pred HHHHHHHhcCCC----CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCH
Confidence 367888888876 489999999998631 1235678999999632 23459999998754321 1223
Q ss_pred HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
....+++.++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++.
T Consensus 124 ~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl--LDEPt~~LD~~~~~ 187 (289)
T PRK13645 124 QEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLV--LDEPTGGLDPKGEE 187 (289)
T ss_pred HHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence 33445678899999994 67889999999999999999999999999888 99999999987543
No 170
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=2.1e-23 Score=159.09 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=99.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc----CCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR----NLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~ 80 (156)
.|++++|+|+.. ++|++|+|.++|.++... . .+..++|++|++.+++..|+.+++.+........ .....
T Consensus 40 STLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 117 (243)
T TIGR01978 40 STLSKTIAGHPS--YEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLL 117 (243)
T ss_pred HHHHHHHhCCCC--CCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHH
Confidence 378888888852 126899999999987532 1 2334899999999999999999987654321100 01122
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+++.++++.+++. ...++.+. +||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~ 180 (243)
T TIGR01978 118 DFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAI--LDEIDSGLDIDAL 180 (243)
T ss_pred HHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEE--ecCCcccCCHHHH
Confidence 2345678999999997 45678887 599999999999999999999888 9999999998744
No 171
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=1.5e-23 Score=158.27 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=98.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEEC--CE--ecCcc---c----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLN--GL--EVEKN---L----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~--G~--~i~~~---~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~ 77 (156)
.|++++|+|++. |++|+|+++ |. ++... . .++.++|++|++.+++.+|+.+++.+..... ..
T Consensus 48 STLl~~i~G~~~----~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~ 120 (224)
T TIGR02324 48 STLLKSLYANYL----PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GV 120 (224)
T ss_pred HHHHHHHhCCCC----CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CC
Confidence 367888888877 489999998 43 44321 1 1346899999998899999999987653321 12
Q ss_pred cHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 78 HHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
......+++.++++.+++.+. .++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 121 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~~LD~~~~~ 186 (224)
T TIGR02324 121 PREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILL--LDEPTASLDAANRQ 186 (224)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHHH
Confidence 223344577889999999764 578999999999999999999999999888 99999999987443
No 172
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.90 E-value=2.6e-23 Score=165.70 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=100.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---c---c-cceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L---M-VKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~---~-~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
+++++|+|++.+.. .++|+|+|+|.++... . . ++.++|+||++ .+.+.+++.+++......+. .....
T Consensus 57 TL~~~l~Gl~~p~~-~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~ 133 (330)
T PRK09473 57 QTAFALMGLLAANG-RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKA 133 (330)
T ss_pred HHHHHHHcCCCCCC-CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHH
Confidence 56777777766410 1499999999998542 1 1 24699999997 56788999998876543321 22344
Q ss_pred HHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 81 ERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
...+++.++++.+++.+ ..++++++|||||+||++||+||+.+|+++| +||||+|+|+.++..
T Consensus 134 ~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~lli--lDEPts~LD~~~~~~ 199 (330)
T PRK09473 134 EAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI--ADEPTTALDVTVQAQ 199 (330)
T ss_pred HHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHHHH
Confidence 45567889999999964 3477999999999999999999999999888 999999999876543
No 173
>PLN03211 ABC transporter G-25; Provisional
Probab=99.90 E-value=1.2e-23 Score=180.38 Aligned_cols=130 Identities=32% Similarity=0.494 Sum_probs=103.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|...+. ..+|+|.++|.++... .++.+||++|++.+++.+|++|++.+....+.+.........+++++
T Consensus 108 STLL~iLaG~~~~~--~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~ 184 (659)
T PLN03211 108 STLLNALAGRIQGN--NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES 184 (659)
T ss_pred HHHHHHHhCCCCCC--ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 37889999987752 1489999999987543 34568999999999999999999988765442222233344567889
Q ss_pred HHHHcCCCcccc-----CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKN-----SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~-----~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++|.+..| +.+++||||||||++||++|+.+|++++ |||||+|+|+.++
T Consensus 185 ~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl--LDEPtsgLD~~~~ 242 (659)
T PLN03211 185 VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI--LDEPTSGLDATAA 242 (659)
T ss_pred HHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE--EeCCCCCcCHHHH
Confidence 999999987654 4567899999999999999999999887 9999999997744
No 174
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=9.6e-24 Score=156.50 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=98.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+++++|+|+.. |++|+|+++|.++.... .+.++|++|+..+++..|+.+|+.+..... . ..+.+.+
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~ 106 (195)
T PRK13541 40 SSLLRMIAGIMQ----PSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYA 106 (195)
T ss_pred HHHHHHHhcCCC----CCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHH
Confidence 367888888877 48999999999875432 345899999887778899999997654221 1 1235678
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 107 ~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ll--lDEP~~~LD~~~~~ 160 (195)
T PRK13541 107 AIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWL--LDEVETNLSKENRD 160 (195)
T ss_pred HHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 8899999888899999999999999999999999999988 99999999987543
No 175
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=9.5e-25 Score=156.61 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=106.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||++++...+..+++|++|+++|.|++++. ...|++++|+.|.+.+|+. ||.+|+.|..+.++.+ .+..++
T Consensus 40 ~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr-----~dr~aa 113 (223)
T COG4619 40 CGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR-----PDRAAA 113 (223)
T ss_pred ccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccC-----CChHHH
Confidence 555555555555555799999999999864 3568899999999999876 9999999988776432 245677
Q ss_pred HHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 87 DALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 87 ~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
..+++++++.+ .+++.+.+|||||+||++|+|.|..-|++++ |||||+.+|+.....|
T Consensus 114 ~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILL--LDE~TsALD~~nkr~i 172 (223)
T COG4619 114 LDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILL--LDEITSALDESNKRNI 172 (223)
T ss_pred HHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEE--ecCchhhcChhhHHHH
Confidence 89999999975 4689999999999999999999999999988 9999999998765544
No 176
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=178.73 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=101.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
|++++|+|++. |++|+|+++|.++... ..++.++|+||++ .+++.+|+.+++.+....+. ......
T Consensus 365 TLlk~i~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~ 438 (623)
T PRK10261 365 TTGRALLRLVE----SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKA 438 (623)
T ss_pred HHHHHHHcCCC----CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHH
Confidence 67788888776 5899999999987532 1345699999997 47888999999987543321 112333
Q ss_pred HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++. ...++++++|||||||||+||+||+.+|+++| +||||+|+|+.++.
T Consensus 439 ~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~lll--lDEPts~LD~~~~~ 500 (623)
T PRK10261 439 AAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVII--ADEAVSALDVSIRG 500 (623)
T ss_pred HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 456788999999996 56799999999999999999999999999998 99999999987543
No 177
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=161.13 Aligned_cols=130 Identities=20% Similarity=0.232 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+. ..|++|+|.++|.++.. ...++.++|+||++.+++ .|+.+|+.+...... .......
T Consensus 53 STLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~ 129 (260)
T PRK10744 53 STLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEM 129 (260)
T ss_pred HHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHH
Confidence 37888999987621 12479999999998742 123567999999988777 799999976543221 1223334
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++.+.+|||||+||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 130 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 192 (260)
T PRK10744 130 DERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL--LDEPCSALDPIST 192 (260)
T ss_pred HHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEE--EcCCCccCCHHHH
Confidence 45788899999974 45688899999999999999999999999998 9999999998754
No 178
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.90 E-value=1.2e-23 Score=159.00 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=97.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCC--CCCCHHHHHHHHHHhhcc-cCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKMD-RNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~ 85 (156)
.+++++|+|++. |++|+|.++|.++.. .++.++|+||++.++ ...|+.+++.+....... .........++
T Consensus 20 STLl~~l~G~~~----~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (223)
T TIGR03771 20 TTLLRAILGLIP----PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA 93 (223)
T ss_pred HHHHHHHhCCCC----CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHH
Confidence 367888888876 489999999998642 345699999997653 347899998764211100 00111233456
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 94 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lli--lDEP~~~LD~~~~ 149 (223)
T TIGR03771 94 VRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLL--LDEPFTGLDMPTQ 149 (223)
T ss_pred HHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 8889999999988899999999999999999999999999988 9999999998743
No 179
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=1e-23 Score=195.56 Aligned_cols=125 Identities=23% Similarity=0.326 Sum_probs=105.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++|+|+|++. |++|+|+++|.++... ..++.+||+||++.+++.+|++|++.+....+ +......++.+
T Consensus 1979 TTLlkmL~Gll~----ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v 2051 (2272)
T TIGR01257 1979 TTTFKMLTGDTT----VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVA 2051 (2272)
T ss_pred HHHHHHHhCCCC----CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 367888888887 4899999999998532 34567999999999999999999998866553 22333445678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++++.+++.+..++++++||||||||++||+||+.+|++++ |||||+|+||.+
T Consensus 2052 ~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL--LDEPTsGLDp~s 2105 (2272)
T TIGR01257 2052 NWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL--LDEPTTGMDPQA 2105 (2272)
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHH
Confidence 889999999998999999999999999999999999999998 999999999874
No 180
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-23 Score=160.40 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=100.2
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+.. .|++|+|+++|.++.. ..+++.++|++|++.+++. |+.+|+.+....+.. .......
T Consensus 59 STLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~ 136 (267)
T PRK14235 59 STFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAEL 136 (267)
T ss_pred HHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHH
Confidence 478899999886410 1479999999998752 1235678999999888875 999999875433210 0112233
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+ ..++.+.+||||||||++||+||+.+|+++| |||||+|+|+.+.
T Consensus 137 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 199 (267)
T PRK14235 137 DEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL--MDEPCSALDPIAT 199 (267)
T ss_pred HHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcCCCHHHH
Confidence 456788999999953 4578899999999999999999999999888 9999999998743
No 181
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.2e-23 Score=176.01 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=100.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++.... .+..+||++|++.+++.+|+.+++.+.... .....+
T Consensus 51 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~ 119 (510)
T PRK15439 51 STLMKIIAGIVP----PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQ 119 (510)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHH
Confidence 378888888877 48999999999875321 124589999999889999999998764211 123345
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll--LDEPt~~LD~~~~ 176 (510)
T PRK15439 120 KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI--LDEPTASLTPAET 176 (510)
T ss_pred HHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCCCCCCHHHH
Confidence 68899999999988899999999999999999999999999888 9999999998744
No 182
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.7e-23 Score=158.66 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=98.4
Q ss_pred HHHHHHHhhhh--hcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRV--VHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~--~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|+. .+. .+++|+|.++|.++... ..++.++|+||++.+++ .|+.+|+.+....+. ......
T Consensus 43 STLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~ 118 (250)
T PRK14245 43 STFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAF 118 (250)
T ss_pred HHHHHHHhhhhcccCC-CCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHH
Confidence 47889998873 220 02589999999987531 23456999999988776 599999976543321 111223
Q ss_pred HHHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+.+.++++.+++.+ ..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+..
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~~ 183 (250)
T PRK14245 119 IRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLL--MDEPASALDPISTA 183 (250)
T ss_pred HHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence 4456788999999853 4678899999999999999999999999888 99999999987544
No 183
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=160.38 Aligned_cols=122 Identities=24% Similarity=0.326 Sum_probs=97.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++ .|+.+|+.+..... . ....+
T Consensus 43 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~ 110 (241)
T PRK14250 43 STLIKLINRLID----PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVD 110 (241)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHH
Confidence 367888888876 5899999999987532 33567899999988776 59999987543221 1 12346
Q ss_pred HHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++. +..++.+.+||||||||++||+|++.+|+++| +||||+|+|+.+..
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~ 168 (241)
T PRK14250 111 VEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL--LDEPTSALDPTSTE 168 (241)
T ss_pred HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 77889999996 56789999999999999999999999999888 99999999987543
No 184
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.7e-23 Score=158.97 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=99.2
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++|+|+|+..+.. ..++|+|.++|.++.. ...+..++|++|++.+++ .|+.+|+.+....+. .......
T Consensus 47 STLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~ 123 (259)
T PRK14260 47 STFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADL 123 (259)
T ss_pred HHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHH
Confidence 378899999876410 0158999999998742 123457999999988887 899999976543321 1122233
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++. +..++.+.+||+|||||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 124 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 186 (259)
T PRK14260 124 DEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLL--MDEPCSALDPIAT 186 (259)
T ss_pred HHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence 45677889998873 45688899999999999999999999999888 9999999997754
No 185
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.7e-23 Score=158.17 Aligned_cols=132 Identities=16% Similarity=0.201 Sum_probs=99.5
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.+++++|+|+..+.. .|++|+|+++|.++... ..++.++|+||++.+++. |+.+|+.+....+. ........
T Consensus 45 STLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~ 122 (251)
T PRK14244 45 STFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKL 122 (251)
T ss_pred HHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHH
Confidence 378899999875211 13699999999987421 235678999999888875 99999976533221 10112233
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.++++.+++.+ ..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.+..
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 186 (251)
T PRK14244 123 DEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL--MDEPCSALDPVATN 186 (251)
T ss_pred HHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence 456778899999964 4577889999999999999999999999888 99999999987543
No 186
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=2.5e-23 Score=173.62 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=101.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc-CCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR-NLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~ 83 (156)
.|++++|+|++.|. |++|+|+++|.++.... .++.++|+||++.+++.+|+.+++.+........ ........
T Consensus 41 STLl~~i~G~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 118 (500)
T TIGR02633 41 STLMKILSGVYPHG--TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118 (500)
T ss_pred HHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH
Confidence 37888888887631 26999999999875421 2356999999998889999999997653221000 01223344
Q ss_pred HHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.+++.+.. ++++.+|||||||||+||+||+.+|+++| |||||+|+|+.+.
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lll--LDEPt~~LD~~~~ 177 (500)
T TIGR02633 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI--LDEPSSSLTEKET 177 (500)
T ss_pred HHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEE--EeCCCCCCCHHHH
Confidence 5788999999998654 57799999999999999999999999888 9999999998744
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-23 Score=173.50 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=101.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhccc-C-CcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDR-N-LHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~-~-~~~ 79 (156)
.|++|+|+|++.| |++|+|+++|.+++.. ..+..++|++|++ .+++.+|+.+++.+........ . ...
T Consensus 302 STLlk~i~Gl~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 378 (506)
T PRK13549 302 TELVQCLFGAYPG---RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDD 378 (506)
T ss_pred HHHHHHHhCCCCC---CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccCh
Confidence 3788888888763 4799999999987532 1245689999995 4678899999997643111100 0 122
Q ss_pred HHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
....+++.++++.+++. +..++++.+|||||||||+||+|++.+|+++| |||||+|+|+.++.
T Consensus 379 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lll--LDEPt~~LD~~~~~ 442 (506)
T PRK13549 379 AAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILI--LDEPTRGIDVGAKY 442 (506)
T ss_pred HHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEE--EcCCCCCcCHhHHH
Confidence 23445788999999996 56899999999999999999999999999888 99999999987553
No 188
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=175.00 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCC---CCCCCCCCHHHHHHHHHHhh---cc--cC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQH---DLTVDTLTVHEHMTLMARLK---MD--RN 76 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~---~~~~~~ltv~e~l~~~~~~~---~~--~~ 76 (156)
.|++|+|+|++. |++|+|+++|.++... ..++.+||+||+ ..+++++|+.+++.+....+ .. .+
T Consensus 303 STLlk~i~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 378 (510)
T PRK09700 303 TELMNCLFGVDK----RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMG 378 (510)
T ss_pred HHHHHHHhCCCc----CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccccccccc
Confidence 378888888887 4899999999987532 124568999998 35778899999987643211 00 01
Q ss_pred -CcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 77 -LHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 77 -~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
........++.++++.+++. +..++++.+|||||||||.||+||+.+|+++| |||||+|+|+.++
T Consensus 379 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl--LDEPt~~LD~~~~ 445 (510)
T PRK09700 379 LFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVII--FDEPTRGIDVGAK 445 (510)
T ss_pred ccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEE--ECCCCCCcCHHHH
Confidence 11223345678999999997 67899999999999999999999999999988 9999999998744
No 189
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.2e-23 Score=158.24 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=99.3
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+. ..+++|+|+++|.++.. ...++.++|+||++.+++. |+.+|+.+....+. .......
T Consensus 52 STLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~ 128 (259)
T PRK14274 52 STFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKL 128 (259)
T ss_pred HHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHH
Confidence 37899999988631 11258999999998742 1235679999999888875 99999976543221 1122333
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++.+ ..++.+.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 129 ~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 191 (259)
T PRK14274 129 QEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLL--MDEPTSALDPVST 191 (259)
T ss_pred HHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 456778899998853 4688899999999999999999999999888 9999999998744
No 190
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.90 E-value=2.4e-23 Score=159.80 Aligned_cols=125 Identities=21% Similarity=0.185 Sum_probs=99.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. .+|+|+++|.++... ..++.++|+||++.+++..|+.+|+.+..... .......++
T Consensus 36 STLl~~l~Gl~~-----~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~ 106 (248)
T PRK03695 36 STLLARMAGLLP-----GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTEAVASA 106 (248)
T ss_pred HHHHHHHcCCCC-----CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcHHHHHH
Confidence 368888888763 389999999987532 23455899999987788899999987652211 122233457
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc-------CCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ-------DCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~-------~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++.+..++++.+||+|||||++||+|++. +|+++| +||||+|+|+.++.
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll--lDEPt~~LD~~~~~ 170 (248)
T PRK03695 107 LNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL--LDEPMNSLDVAQQA 170 (248)
T ss_pred HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE--EcCCcccCCHHHHH
Confidence 8899999999888899999999999999999999997 679887 99999999987543
No 191
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=6.3e-23 Score=157.83 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=97.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+..|...+++|+|+++|.++.... .++.++|++|++. +.+..++.+++.+..... ... ...++
T Consensus 43 STLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~ 117 (254)
T PRK10418 43 SLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKP--ADDAT 117 (254)
T ss_pred HHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCC--hHHHH
Confidence 378888888877532238999999999875432 2356999999974 345578888875543221 111 12356
Q ss_pred HHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+ ..++.+.+||+|||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl--LDEPt~~LD~~~~ 176 (254)
T PRK10418 118 LTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII--ADEPTTDLDVVAQ 176 (254)
T ss_pred HHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE--EeCCCcccCHHHH
Confidence 788999999976 4688999999999999999999999999888 9999999997754
No 192
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7e-23 Score=157.07 Aligned_cols=130 Identities=20% Similarity=0.227 Sum_probs=99.1
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+.. .+++|+|+++|.++.. ...++.++|++|++.+++ .|+.+|+.+....+. .......
T Consensus 43 STLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~ 119 (250)
T PRK14240 43 STFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKL 119 (250)
T ss_pred HHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHH
Confidence 378889999865310 0268999999998753 123567899999988777 899999987543221 1122234
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+||||||||++||||++.+|+++| +||||+|+|+.+.
T Consensus 120 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 182 (250)
T PRK14240 120 DEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLL--MDEPTSALDPIST 182 (250)
T ss_pred HHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 45677888898874 34588899999999999999999999999988 9999999998754
No 193
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.6e-23 Score=157.76 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..|. ..|++|+|+++|.++... ..++.++|+||++.+++ .|+.+|+.+...... .......
T Consensus 44 STLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~ 120 (251)
T PRK14270 44 STFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKEL 120 (251)
T ss_pred HHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHH
Confidence 47889999987641 113689999999987531 23566899999998887 899999987543321 1112233
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 183 (251)
T PRK14270 121 DKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVIL--MDEPTSALDPIST 183 (251)
T ss_pred HHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 45677889999874 34678899999999999999999999999888 9999999998754
No 194
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.7e-23 Score=160.70 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=99.8
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.+++++|+|+..+.. .|++|+|+++|.++.. ...++.++|+||++.+++. |+.+|+.+....+ .... ..
T Consensus 79 STLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~ 153 (285)
T PRK14254 79 STFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DI 153 (285)
T ss_pred HHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HH
Confidence 378888998876311 1479999999998742 1335679999999887775 9999998754332 1122 23
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.+.
T Consensus 154 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLL--LDEPts~LD~~~~ 216 (285)
T PRK14254 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVIL--MDEPASALDPVAT 216 (285)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCCCCHHHH
Confidence 45688899999985 35688899999999999999999999999888 9999999998754
No 195
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=3.6e-23 Score=172.67 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=101.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhcc--cCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMD--RNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~--~~~~~ 79 (156)
.|++|+|+|++.| |++|+|+++|.++... ..++.+||++|+. .+++.+|+.+++.+....... .....
T Consensus 300 STLl~~l~G~~~p---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~ 376 (500)
T TIGR02633 300 TELVQALFGAYPG---KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376 (500)
T ss_pred HHHHHHHhCCCCC---CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence 3788888888874 3799999999987531 2245689999996 478889999998764311110 01122
Q ss_pred HHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 80 VERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
.....++.++++.+++.. ..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++..
T Consensus 377 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lll--LDEPt~~LD~~~~~~ 441 (500)
T TIGR02633 377 AAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLI--LDEPTRGVDVGAKYE 441 (500)
T ss_pred HHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEE--EcCCCCCcCHhHHHH
Confidence 334456889999999974 5799999999999999999999999999888 999999999875543
No 196
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.8e-23 Score=158.46 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+.... ..|++|+|+++|.++... ..++.++|++|++.+++. |+.+|+.+...... .......
T Consensus 61 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~ 137 (268)
T PRK14248 61 STFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVL 137 (268)
T ss_pred HHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHH
Confidence 37889999976410 014799999999987531 235679999999888875 99999976543221 1112223
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.++++.+++. +..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 138 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lll--LDEPt~~LD~~~~~ 201 (268)
T PRK14248 138 DEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLL--LDEPASALDPISNA 201 (268)
T ss_pred HHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEE--EcCCCcccCHHHHH
Confidence 45577788888884 44678899999999999999999999999888 99999999987543
No 197
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=5.1e-23 Score=172.54 Aligned_cols=129 Identities=20% Similarity=0.161 Sum_probs=100.3
Q ss_pred HHHHHHHhhhhh-cCCCCcceEEEEC-----------------------CEecC-------c------ccccceeeEecC
Q psy16753 9 FSGIHLLGQRVV-HELSDVDGQILLN-----------------------GLEVE-------K------NLMVKVSGFVPQ 51 (156)
Q Consensus 9 ~~~l~~l~g~~~-~~~~~~~G~I~~~-----------------------G~~i~-------~------~~~~~~ig~v~Q 51 (156)
.|++++|+|++. + |++|+|+++ |.++. . ...++.++|+||
T Consensus 40 STLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 116 (520)
T TIGR03269 40 SVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQ 116 (520)
T ss_pred HHHHHHHhhcccCC---CCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEec
Confidence 378899999862 2 589999997 32221 0 012456899999
Q ss_pred C-CCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEe
Q psy16753 52 H-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKI 130 (156)
Q Consensus 52 ~-~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~ 130 (156)
+ ..+++.+|+.+++.+..... +.......+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++|
T Consensus 117 ~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lll-- 191 (520)
T TIGR03269 117 RTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFL-- 191 (520)
T ss_pred cccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE--
Confidence 7 57788899999998754332 12333445678899999999888899999999999999999999999999888
Q ss_pred cCCCCCCCCchhhhe
Q psy16753 131 TDSQPRGKWPISALF 145 (156)
Q Consensus 131 ~Dep~~g~~~~~~~~ 145 (156)
|||||+|+|+.++..
T Consensus 192 LDEPt~~LD~~~~~~ 206 (520)
T TIGR03269 192 ADEPTGTLDPQTAKL 206 (520)
T ss_pred eeCCcccCCHHHHHH
Confidence 999999999875544
No 198
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=5.6e-23 Score=171.68 Aligned_cols=129 Identities=20% Similarity=0.279 Sum_probs=100.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhccc--C-Cc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDR--N-LH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~--~-~~ 78 (156)
.|++++|+|++. |++|+|.++|.++... ..++.+||+||++ .+++.+|+.+++.+........ . ..
T Consensus 292 STLl~~l~G~~~----p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 367 (501)
T PRK10762 292 TELMKVLYGALP----RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLK 367 (501)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccC
Confidence 367888888876 4899999999987532 1245699999996 4678899999997642111000 0 12
Q ss_pred HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+++.++++.+++. +..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 368 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lll--LDEPt~~LD~~~~ 431 (501)
T PRK10762 368 HADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLI--LDEPTRGVDVGAK 431 (501)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEE--EcCCCCCCCHhHH
Confidence 223345688999999995 67899999999999999999999999999888 9999999998744
No 199
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.89 E-value=8.9e-24 Score=160.79 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=91.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|+||++.+++ .|+.+|+.+..................
T Consensus 42 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~ 116 (237)
T cd03252 42 STLTKLIQRFYV----PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAG 116 (237)
T ss_pred HHHHHHHhcCcC----CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 367888888887 4899999999987532 23567999999987764 699999875321000000000000112
Q ss_pred HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.+.++.+ ++....++++.+||||||||++||+|++.+|+++| |||||+|+|+.++.
T Consensus 117 ~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEP~~~LD~~~~~ 175 (237)
T cd03252 117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILI--FDEATSALDYESEH 175 (237)
T ss_pred cHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEE--EeCCcccCCHHHHH
Confidence 23445555 55555678899999999999999999999999888 99999999987543
No 200
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.3e-23 Score=160.14 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+.. .|++|+|.++|.++.. ...++.++|+||++.+++. |+.+|+.+....+ .... ..
T Consensus 53 STLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~ 127 (269)
T PRK14259 53 STVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DM 127 (269)
T ss_pred HHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HH
Confidence 378889999876311 1489999999998642 1235679999999988874 9999998764332 1111 23
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++. +..++++.+||+|||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 128 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEPt~gLD~~~~~ 191 (269)
T PRK14259 128 DELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVIL--MDEPCSALDPISTL 191 (269)
T ss_pred HHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence 34567788888763 45688899999999999999999999999888 99999999987543
No 201
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.89 E-value=5.7e-24 Score=160.81 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=96.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.++|++|++.+++ .|+.+|+.+..................
T Consensus 54 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~ 128 (226)
T cd03248 54 STVVALLENFYQ----PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAH 128 (226)
T ss_pred HHHHHHHhcCcC----CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcC
Confidence 367888888876 4899999999876432 23466899999987775 599999875432110000001111123
Q ss_pred HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.+.++.+ ++.+..++++.+||||||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 129 ~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 187 (226)
T cd03248 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI--LDEATSALDAESEQ 187 (226)
T ss_pred cHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 56778888 78877888999999999999999999999999998 99999999977443
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=157.73 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=100.0
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|.. .|++|+|.++|.++... ..++.++|+||++.+++ .|+.+|+.+...... .......
T Consensus 60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~ 136 (267)
T PRK14237 60 STYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVL 136 (267)
T ss_pred HHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHH
Confidence 378899999876310 14799999999987421 23567999999988777 599999987543211 1122234
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. ...++++.+||+||+||++||||++.+|+++| +||||+|+|+.++
T Consensus 137 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--LDEPt~~LD~~~~ 199 (267)
T PRK14237 137 DEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILL--MDEPASALDPIST 199 (267)
T ss_pred HHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 45678889999884 35688899999999999999999999999888 9999999998743
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.89 E-value=9.8e-23 Score=157.06 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=97.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEe-----cCccc-------ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLE-----VEKNL-------MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMD 74 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~-----i~~~~-------~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~ 74 (156)
.|++++|+|++. |++|+|.++|.+ +.... .++.++|+||++. +++..++.+++.+......
T Consensus 46 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~- 120 (258)
T PRK11701 46 TTLLNALSARLA----PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG- 120 (258)
T ss_pred HHHHHHHhCCCC----CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc-
Confidence 367888888776 589999999987 54321 2346899999974 5667788888865322111
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 75 RNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..........+.++++.+++.+ ..++.+.+||||||||++|||||+.+|+++| +||||+|+|+.+.
T Consensus 121 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~lll--lDEPt~~LD~~~~ 187 (258)
T PRK11701 121 -ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF--MDEPTGGLDVSVQ 187 (258)
T ss_pred -cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 1112233456788999999974 6789999999999999999999999999988 9999999998754
No 204
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=156.01 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=97.4
Q ss_pred HHHHHHHhhhhh--cCCCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVV--HELSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~--~~~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|+.. |. .+++|+|+++|.++.. ...++.++|+||++.+++ .|+.+|+.+...... ......
T Consensus 45 STLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~ 120 (252)
T PRK14239 45 STLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQV 120 (252)
T ss_pred HHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHH
Confidence 378888888753 20 0158999999998742 123567999999988877 799999987543221 111222
Q ss_pred HHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+.+.++++.+++. +..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~~LD~~~~ 184 (252)
T PRK14239 121 LDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL--LDEPTSALDPISA 184 (252)
T ss_pred HHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHHH
Confidence 345677889999874 34688899999999999999999999999888 9999999997744
No 205
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=155.56 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|.. ..++|+|.++|.++.. ...+..++|++|++.+++..|+.+|+.+...... .......
T Consensus 44 STLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~ 121 (252)
T PRK14272 44 TTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHL 121 (252)
T ss_pred HHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHH
Confidence 378899999877520 0138999999998752 1235568999999988888999999976543221 0112223
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.+.++.+++. +..++++.+||||||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 122 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 184 (252)
T PRK14272 122 MEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILL--MDEPTSALDPAST 184 (252)
T ss_pred HHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 44566677777653 45688899999999999999999999999888 9999999998754
No 206
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=155.84 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=98.6
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+. ..|++|+|.++|.++.. ...++.++|++|++.+++ .|+.+|+.+...... .......
T Consensus 44 STLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~ 120 (251)
T PRK14251 44 STFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELI 120 (251)
T ss_pred HHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHH
Confidence 47889999987621 01379999999998742 123556899999988776 799999976543221 1112223
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++. ...++.+.+|||||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~lll--lDEP~~~LD~~~~ 183 (251)
T PRK14251 121 DQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVL--LDEPTSALDPISS 183 (251)
T ss_pred HHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEE--ecCCCccCCHHHH
Confidence 45677889999984 44678899999999999999999999999888 9999999998754
No 207
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.89 E-value=1.3e-22 Score=157.35 Aligned_cols=126 Identities=20% Similarity=0.139 Sum_probs=98.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
+++++|+|++. |++|+|.++|.++... ..++.++|++|++ .+++..++.+++.+..... .......
T Consensus 53 TLl~~l~Gl~~----p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~ 126 (268)
T PRK10419 53 TLARLLVGLES----PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAE 126 (268)
T ss_pred HHHHHHhCCCC----CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHH
Confidence 67888888776 5899999999987432 2356799999997 3556789999886543211 1122333
Q ss_pred HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+.++++.+++. ...++.+.+||+|||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 127 ~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll--LDEPt~~LD~~~~ 187 (268)
T PRK10419 127 RLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI--LDEAVSNLDLVLQ 187 (268)
T ss_pred HHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE--EeCCCcccCHHHH
Confidence 445788999999997 57799999999999999999999999999988 9999999998643
No 208
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8e-23 Score=174.67 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=99.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecC----------c---c---cc-cceeeEecCCC--CCCCCCCHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVE----------K---N---LM-VKVSGFVPQHD--LTVDTLTVHEHMTLMAR 70 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~----------~---~---~~-~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~ 70 (156)
|++++|+|++. |++|+|.++|.++. . . .. +..+||++|++ .+++.+|+.+++.+...
T Consensus 57 TLl~~l~Gll~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~ 132 (623)
T PRK10261 57 VTALALMRLLE----QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIR 132 (623)
T ss_pred HHHHHHHcCCC----CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHH
Confidence 67778888776 48999999997441 0 0 11 24689999997 56788999999988654
Q ss_pred hhcccCCcHHHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 71 LKMDRNLHHVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+. ........+++.++++.+++.+ ..++++.+|||||||||+||+||+.+|+++| +||||+|||+.++
T Consensus 133 ~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLl--lDEPt~~LD~~~~ 204 (623)
T PRK10261 133 LHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLI--ADEPTTALDVTIQ 204 (623)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEE--EeCCCCccCHHHH
Confidence 321 2234445567889999999953 4689999999999999999999999999888 9999999998863
No 209
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=5.5e-23 Score=187.90 Aligned_cols=131 Identities=23% Similarity=0.367 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+..+. +.+|+|.++|.+......++.+||++|++.+++.+|++|++.+....+.+.........+.+++
T Consensus 920 TTLL~~LaG~~~~g--~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~ 997 (1470)
T PLN03140 920 TTLMDVLAGRKTGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDE 997 (1470)
T ss_pred HHHHHHHcCCCCCC--cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 37899999986532 3689999999887543445678999999999999999999998765543222233334457899
Q ss_pred HHHHcCCCccccCcc-----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVL-----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~-----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++|.+..|+.+ ++|||||||||+||++|+.+|++++ |||||+|||+.++
T Consensus 998 vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~--LDEPTsgLD~~~a 1055 (1470)
T PLN03140 998 VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAA 1055 (1470)
T ss_pred HHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE--EeCCCCCCCHHHH
Confidence 999999998888886 5899999999999999999999987 9999999997743
No 210
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=155.74 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=97.7
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|.. .+++|+|+++|.++.. ...++.++|+||++.+++. |+.+|+.+....+.. ......
T Consensus 44 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~ 120 (251)
T PRK14249 44 STLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRL 120 (251)
T ss_pred HHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHH
Confidence 378889999887520 1136999999998742 1335679999999988875 999999875433210 111223
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++. +..++.+.+||+|||||++||||++.+|+++| |||||+|+|+.+.
T Consensus 121 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 183 (251)
T PRK14249 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVIL--MDEPCSALDPVST 183 (251)
T ss_pred HHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 34567778888864 45688999999999999999999999999988 9999999997744
No 211
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=159.01 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=97.9
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.+++++|+|+..... .|++|+|.++|.++... ..++.++|++|++.+++. |+.+|+.+....+. .......
T Consensus 79 STLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~ 155 (286)
T PRK14275 79 STFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQL 155 (286)
T ss_pred HHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHH
Confidence 378888888754110 03799999999987421 235679999999888775 99999987543221 0112223
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 156 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll--LDEPt~gLD~~~~ 218 (286)
T PRK14275 156 EEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILL--LDEPTSALDPKAT 218 (286)
T ss_pred HHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 45677888888873 45688899999999999999999999999888 9999999997744
No 212
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=9e-23 Score=171.40 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=100.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~ 80 (156)
.|++|+|+|++. ++|+|+++|.++... .+++.++|+||++ .+++.+|+.+++.+....+. ......
T Consensus 326 STLlk~l~Gl~~-----~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~ 399 (529)
T PRK15134 326 STTGLALLRLIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAA 399 (529)
T ss_pred HHHHHHHhCcCC-----CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChH
Confidence 367888888863 599999999987532 1245689999997 36788999999987543221 012223
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
...+++.++++.+++. +..++++.+|||||||||+||+|++.+|+++| |||||+|+|+.++.
T Consensus 400 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~~ 462 (529)
T PRK15134 400 QREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLII--LDEPTSSLDKTVQA 462 (529)
T ss_pred HHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEE--eeCCccccCHHHHH
Confidence 3446788999999997 46799999999999999999999999999988 99999999987543
No 213
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-22 Score=155.27 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhhcCCC-CcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELS-DVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~-~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+... +++|+|.++|.++... ..++.++|++|++.+++. |+.+|+.+....+. .......
T Consensus 46 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~ 122 (253)
T PRK14261 46 STLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTL 122 (253)
T ss_pred HHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHH
Confidence 3788899998653210 2589999999987531 235668999999988875 99999987644321 1122233
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++. ...++.+.+||+|||||+.||+|++.+|+++| +||||+|+|+.+.
T Consensus 123 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--LDEP~~gLD~~~~ 185 (253)
T PRK14261 123 DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL--MDEPCSALDPIAT 185 (253)
T ss_pred HHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 45677888888874 34678899999999999999999999999998 9999999997744
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.9e-23 Score=158.64 Aligned_cols=128 Identities=22% Similarity=0.241 Sum_probs=93.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|++|++.+++ .|+.+|+.+..................
T Consensus 42 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 116 (234)
T cd03251 42 STLVNLIPRFYD----VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAAN 116 (234)
T ss_pred HHHHHHHhcccc----CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 367888888877 4899999999987432 23566899999988776 699999876422110000000001112
Q ss_pred HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+.++.+ ++....++++.+||+|||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 117 ~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--LDEP~~~LD~~~~ 174 (234)
T cd03251 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI--LDEATSALDTESE 174 (234)
T ss_pred cHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence 45566666 66667788899999999999999999999999888 9999999998754
No 215
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=8.6e-23 Score=186.47 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=107.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+..+. .+++|+|.++|.++.. ..++.+||++|++.+++.+|++|++.+....+.+.........+++++
T Consensus 803 STLL~~Lag~~~~g-~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~ 880 (1394)
T TIGR00956 803 TTLLNVLAERVTTG-VITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880 (1394)
T ss_pred HHHHHHHhCCCCCC-CcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 37899999987632 1478999999999853 346779999999888899999999998776553322333344567899
Q ss_pred HHHHcCCCccccCccC----cCChHHHHHHHHHHHHhcCCC-eeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLN----VLSGGERKRVALAVQVSQDCS-RVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~----~LSgGerqrv~LA~AL~~~p~-ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..|+.++ +||||||||++||++|+.+|+ +++ |||||+|+|+.++
T Consensus 881 ~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl--LDEPTsgLD~~~~ 938 (1394)
T TIGR00956 881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF--LDEPTSGLDSQTA 938 (1394)
T ss_pred HHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE--EcCCCCCCCHHHH
Confidence 9999999988898887 799999999999999999997 777 9999999997744
No 216
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-22 Score=154.92 Aligned_cols=130 Identities=19% Similarity=0.235 Sum_probs=99.4
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+.. .|++|+|.++|.++... ..++.++|+||++.+++ .|+.+|+.+....+. .......
T Consensus 43 STLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~ 119 (250)
T PRK14262 43 TTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKL 119 (250)
T ss_pred HHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHH
Confidence 378899999876310 13799999999987531 23567999999988877 799999987543221 1112223
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++.+ ..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~lll--lDEP~~~LD~~~~ 182 (250)
T PRK14262 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL--LDEPTSALDPIAT 182 (250)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEE--EeCCccccCHHHH
Confidence 455778889988853 4688899999999999999999999999888 9999999998744
No 217
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=2.1e-23 Score=157.04 Aligned_cols=120 Identities=24% Similarity=0.228 Sum_probs=91.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|+.. |++|+|+++|.++... ..++.++|++|++.+++ .|+.+++.+.... . ..+.
T Consensus 44 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~----~~~~ 109 (220)
T cd03245 44 STLLKLLAGLYK----PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----A----DDER 109 (220)
T ss_pred HHHHHHHhcCcC----CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----C----CHHH
Confidence 367888888876 4899999999987431 23456899999988776 5999998653211 1 1234
Q ss_pred HHHHHHHcCCCccccCc-----------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLLKCKNSV-----------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~-----------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++.+..++. +.+||||||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 110 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll--lDEPt~~LD~~~~~ 177 (220)
T cd03245 110 ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL--LDEPTSAMDMNSEE 177 (220)
T ss_pred HHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHHH
Confidence 55677888887655554 46999999999999999999999888 99999999987543
No 218
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=7.7e-23 Score=159.03 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=99.0
Q ss_pred HHHHHHHhhhhhcCCCCc--------ceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-ccC
Q psy16753 9 FSGIHLLGQRVVHELSDV--------DGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRN 76 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~--------~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~ 76 (156)
.|++++|+|++.| + +|+|.++|.++... ..++.++|+||++..++..|+.+|+.+...... ...
T Consensus 41 STLl~~laG~~~p----~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 116 (272)
T PRK13547 41 STLLKALAGDLTG----GGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAG 116 (272)
T ss_pred HHHHHHHhCCCCC----cccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccc
Confidence 3788888888764 5 89999999987532 234558999999766666899999976431110 001
Q ss_pred CcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCchhh
Q psy16753 77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.......+.+.++++.+++.+..++++.+||||||||++||+||+ .+|+++| |||||+|+|+.+.
T Consensus 117 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll--LDEPt~~LD~~~~ 190 (272)
T PRK13547 117 ALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL--LDEPTAALDLAHQ 190 (272)
T ss_pred cCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE--EcCccccCCHHHH
Confidence 111233456788999999998889999999999999999999999 5999888 9999999997743
No 219
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.8e-23 Score=159.81 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=96.1
Q ss_pred HHHHHhhhhh-cCCCCcceEEEECCEecCcc-------cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCC-cH
Q psy16753 11 GIHLLGQRVV-HELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNL-HH 79 (156)
Q Consensus 11 ~l~~l~g~~~-~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~-~~ 79 (156)
+-+.|.|++. +.-.-.+|+|.|+|.++.+. .+.+.++++||++. +.|-.++.+.+......+. .. ..
T Consensus 47 ~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~ 124 (316)
T COG0444 47 LAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSK 124 (316)
T ss_pred HHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhh
Confidence 3445556655 21123779999999987432 12356899999964 5677889998877665542 12 24
Q ss_pred HHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 80 VERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++..+++.++++.+++.+ ..+.++++|||||+|||+||+|++.+|+++| .||||.+||++.
T Consensus 125 ~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI--ADEPTTALDvt~ 188 (316)
T COG0444 125 KEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI--ADEPTTALDVTV 188 (316)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE--eCCCcchhhHHH
Confidence 456778999999999974 5699999999999999999999999999887 999777666553
No 220
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=157.25 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=97.2
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.+. ..|++|+|.++|.++.. ...++.++|+||++.+++. |+.+|+.+....+. .......
T Consensus 64 STLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~ 140 (271)
T PRK14238 64 STYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTL 140 (271)
T ss_pred HHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHH
Confidence 37889999987621 11489999999998742 1235679999999888774 99999987643221 0112222
Q ss_pred HHHHHHHHHHcC----CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELG----LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~----L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
...+.+.++.++ +.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+..
T Consensus 141 ~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lll--LDEPt~~LD~~~~~ 204 (271)
T PRK14238 141 DEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVIL--MDEPTSALDPISTL 204 (271)
T ss_pred HHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCcCCHHHHH
Confidence 345667777774 3445688899999999999999999999999888 99999999987543
No 221
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=2.9e-23 Score=176.15 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=87.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||+++|+.++...+ |++|+|.++|.++.. ..+++.++||+|++.+|+. |++||+.++.. ... .+++
T Consensus 387 sGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~----~eei 455 (588)
T PRK11174 387 AGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DAS----DEQL 455 (588)
T ss_pred CCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCC----HHHH
Confidence 34444444444444 479999999998864 3467889999999998875 99999987521 111 2234
Q ss_pred HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++..++ +.........||||||||++||||++.+|+++| |||||+++|+.+..
T Consensus 456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili--LDE~TSaLD~~te~ 522 (588)
T PRK11174 456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL--LDEPTASLDAHSEQ 522 (588)
T ss_pred HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHHH
Confidence 444444443 222333446799999999999999999999988 99999999977543
No 222
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3e-23 Score=150.54 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=103.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc----------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 73 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~ 73 (156)
|+++||.=+.. |+.|.|.++|+.+.-. ..|.+.|+|||+..++..+|+.||+..+ ..+.
T Consensus 47 TfLRCiN~LE~----P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhV 121 (256)
T COG4598 47 TFLRCINFLEK----PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHV 121 (256)
T ss_pred HHHHHHHhhcC----CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHh
Confidence 67788877777 4899999999987310 1244579999999999999999998653 2232
Q ss_pred ccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
. +.++.+..++++.++.++|+.+..+.++..|||||+||++|||||+.+|++++ +||||+.+||-
T Consensus 122 L-g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmL--FDEPTSALDPE 186 (256)
T COG4598 122 L-GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVML--FDEPTSALDPE 186 (256)
T ss_pred h-cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEe--ecCCcccCCHH
Confidence 1 34566777899999999999999999999999999999999999999999998 99999999985
No 223
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.2e-22 Score=154.30 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=99.3
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+. ..|++|+|.++|.++.. ...++.++|+||++.+|+. |+.+|+.+....+ ........
T Consensus 43 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~ 119 (250)
T PRK14266 43 STFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFI 119 (250)
T ss_pred HHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHH
Confidence 37889999986521 11379999999998753 1235679999999888875 9999997654322 11122234
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++.+.+||+|||||++||+||+.+|+++| +||||+|+|+.++
T Consensus 120 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEP~~gLD~~~~ 182 (250)
T PRK14266 120 EERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVIL--MDEPCSALDPIST 182 (250)
T ss_pred HHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCCccCCHHHH
Confidence 56778889999874 34578899999999999999999999999888 9999999998754
No 224
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=1.5e-22 Score=170.09 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=99.8
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc------cc-cceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN------LM-VKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~------~~-~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~ 78 (156)
.|++++|+|++.|. ..|++|+|+++|.++... .. ++.+||+||++. +++..++.+++.+...... ...
T Consensus 49 STLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 126 (529)
T PRK15134 49 SVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMR 126 (529)
T ss_pred HHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCC
Confidence 36788888888741 113799999999987532 11 246999999974 5567789998865432211 123
Q ss_pred HHHHHHHHHHHHHHcCCCc---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 79 HVERARTVDALLKELGLLK---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+++.++++.+++.+ ..++++.+|||||||||+||+||+.+|+++| |||||+|+|+.++
T Consensus 127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll--lDEPt~~LD~~~~ 192 (529)
T PRK15134 127 REAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI--ADEPTTALDVSVQ 192 (529)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE--EcCCCCccCHHHH
Confidence 3344567889999999975 3588999999999999999999999999888 9999999998754
No 225
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=1.3e-22 Score=169.94 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=98.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCC---CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|+.. |++|+|+++|.++.... .+..++|+||++ .+++..|+.+++................
T Consensus 303 STLl~~i~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~ 378 (510)
T PRK15439 303 TELAETLYGLRP----ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR 378 (510)
T ss_pred HHHHHHHcCCCC----CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH
Confidence 367888888776 58999999999875321 234689999984 4678889999985421110000011222
Q ss_pred HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
..+.+.++++.+++. +..++++.+||||||||+.||+|++.+|+++| |||||+|+|+.++..
T Consensus 379 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLl--LDEPt~gLD~~~~~~ 441 (510)
T PRK15439 379 ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLI--VDEPTRGVDVSARND 441 (510)
T ss_pred HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEE--ECCCCcCcChhHHHH
Confidence 345678999999997 67899999999999999999999999999888 999999999875543
No 226
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.7e-22 Score=155.87 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=99.8
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+. ..|++|+|+++|.++... ..++.++|++|++.+++. |+.+|+.+...... .......
T Consensus 65 STLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~ 141 (272)
T PRK14236 65 STLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVL 141 (272)
T ss_pred HHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHH
Confidence 37889999987631 114799999999987531 235678999999888876 99999976543221 1112223
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++.+++.+ ..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 142 ~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--LDEPt~gLD~~~~ 204 (272)
T PRK14236 142 DEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLL--LDEPTSALDPIST 204 (272)
T ss_pred HHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEE--EeCCcccCCHHHH
Confidence 456778899988853 4678899999999999999999999999998 9999999998753
No 227
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-22 Score=155.38 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=98.7
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|++.|. ..|++|+|+++|.++.. ...++.++|+||++.++ ..|+.+|+.+....+. . ....
T Consensus 48 STLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~ 122 (261)
T PRK14263 48 STVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDL 122 (261)
T ss_pred HHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHH
Confidence 37889999998741 11369999999998742 12356689999998877 5899999987643321 1 1223
Q ss_pred HHHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 83 ARTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.+.+.++++.+++.+ ..++++.+||+||+||++||||++.+|+++| +||||+|+|+.+
T Consensus 123 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPtsgLD~~~ 184 (261)
T PRK14263 123 GDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLL--LDEPCSALDPIA 184 (261)
T ss_pred HHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHH
Confidence 456888999999854 3467788999999999999999999999998 999999999875
No 228
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.7e-23 Score=158.33 Aligned_cols=130 Identities=20% Similarity=0.188 Sum_probs=95.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCC--CCCCHHHHHHHHHHhhc-ccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKM-DRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|.++|.++.....+..++|+||++.+. ...++.+++.+...... ..........++
T Consensus 47 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 122 (272)
T PRK15056 47 STLFKALMGFVR----LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI 122 (272)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHH
Confidence 367888888877 48999999999875332234589999997542 23467777654311000 000111223456
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.+..
T Consensus 123 ~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll--lDEPt~~LD~~~~~ 179 (272)
T PRK15056 123 VTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL--LDEPFTGVDVKTEA 179 (272)
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHHH
Confidence 7788999999888899999999999999999999999999888 99999999987443
No 229
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.8e-22 Score=156.16 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=99.3
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++.|. -.|++|+|.++|.++... .++..++|++|++.+++ .|+.+|+.+...... ........
T Consensus 61 STLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~ 137 (276)
T PRK14271 61 TTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFR 137 (276)
T ss_pred HHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHH
Confidence 37888888887641 013699999999987531 23567899999988887 799999976543221 11233334
Q ss_pred HHHHHHHHHcCCCc----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLK----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+.++++.+++.. ..++.+.+||+||+||++||||++.+|+++| +||||+|+|+.++
T Consensus 138 ~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lll--LDEPt~~LD~~~~ 199 (276)
T PRK14271 138 GVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL--LDEPTSALDPTTT 199 (276)
T ss_pred HHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHHH
Confidence 45678899999863 3578899999999999999999999999888 9999999998754
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=1.3e-22 Score=170.09 Aligned_cols=126 Identities=22% Similarity=0.195 Sum_probs=97.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEEC-CEe---cCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLN-GLE---VEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~-G~~---i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 78 (156)
.|++++|+|++. |++|+|+++ |.+ +... ..++.++|+||++.+++.+|+.+++.+..... ..
T Consensus 324 STLl~~l~Gl~~----p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~ 395 (520)
T TIGR03269 324 TTLSKIIAGVLE----PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LP 395 (520)
T ss_pred HHHHHHHhCCCC----CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CC
Confidence 377888888876 589999995 532 2211 12456899999988888999999997643221 12
Q ss_pred HHHHHHHHHHHHHHcCCCc-----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 79 HVERARTVDALLKELGLLK-----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~-----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.....+++.++++.+++.+ ..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 396 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLl--lDEPt~~LD~~~~~ 464 (520)
T TIGR03269 396 DELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVI--LDEPTGTMDPITKV 464 (520)
T ss_pred HHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 2233456788999999964 4689999999999999999999999999988 99999999977443
No 231
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.5e-22 Score=153.13 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|+..+. -.|++|+|+++|.++.. ...++.++|+||++.+++ .|+.+|+.+...... ........
T Consensus 43 STLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~ 119 (249)
T PRK14253 43 STLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLD 119 (249)
T ss_pred HHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHH
Confidence 37889999987741 01368999999998742 133566899999988887 799999976543211 01122233
Q ss_pred HHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+.++.+++. +..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 181 (249)
T PRK14253 120 EVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVIL--MDEPTSALDPIAT 181 (249)
T ss_pred HHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHH
Confidence 5667788888874 34678899999999999999999999999888 9999999998754
No 232
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1e-22 Score=170.04 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=100.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhc-ccC--Cc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKM-DRN--LH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~-~~~--~~ 78 (156)
.|++|+|+|+.. |++|+|+++|+++... ..++.++|+||++ .+++..|+.+++.+...... ... ..
T Consensus 293 STLlk~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 368 (501)
T PRK11288 293 SELMKLLYGATR----RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLIN 368 (501)
T ss_pred HHHHHHHcCCCc----CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccC
Confidence 367888888876 5899999999987421 1245689999986 37888999999876432110 001 11
Q ss_pred HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
.....+.+.++++.+++. +..++++.+|||||||||.||+|++.+|+++| |||||+|+|+.++..+
T Consensus 369 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lll--LDEPt~~LD~~~~~~l 435 (501)
T PRK11288 369 NRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVIL--LDEPTRGIDVGAKHEI 435 (501)
T ss_pred hHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEE--EcCCCCCCCHhHHHHH
Confidence 223345678999999994 67899999999999999999999999999988 9999999998755433
No 233
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.4e-23 Score=156.79 Aligned_cols=123 Identities=21% Similarity=0.209 Sum_probs=89.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH-
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR- 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~- 84 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++. |+.+|+.+..... ......+
T Consensus 43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~~~~~~~ 112 (229)
T cd03254 43 TTLINLLMRFYD----PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TDEEVIEA 112 (229)
T ss_pred HHHHHHHhcCcC----CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CHHHHHHH
Confidence 368888888877 4899999999987531 335668999999887775 9999987542110 1111110
Q ss_pred ----HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 ----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ----~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++.+ ++....++.+.+||+|||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 113 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~lll--lDEP~~~LD~~~~ 175 (229)
T cd03254 113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILI--LDEATSNIDTETE 175 (229)
T ss_pred HHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence 122334443 45555567789999999999999999999999998 9999999997643
No 234
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=155.35 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=96.5
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+..+.. .|++|+|+++|.++.. ...++.++|++|++.+++ .|+.+|+.+....+ ... ...
T Consensus 50 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~ 124 (264)
T PRK14243 50 STILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDM 124 (264)
T ss_pred HHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHH
Confidence 478899999876310 1379999999998742 123566999999988777 49999997654322 111 122
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++. +..++.+.+||||||||++|||||+.+|+++| +||||+|+|+.++
T Consensus 125 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 187 (264)
T PRK14243 125 DELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL--MDEPCSALDPIST 187 (264)
T ss_pred HHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 34566778887773 34678899999999999999999999999888 9999999998754
No 235
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.4e-22 Score=155.53 Aligned_cols=114 Identities=20% Similarity=0.131 Sum_probs=92.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|. .++|++|+...++..|+.+++.+..... . . ......+
T Consensus 39 STLlk~L~G~~~----p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~-~---~~~~~~~ 98 (246)
T cd03237 39 TTFIKMLAGVLK----PDEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDF---Y-T---HPYFKTE 98 (246)
T ss_pred HHHHHHHhCCCc----CCCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhc---c-c---cHHHHHH
Confidence 367888888877 48999999885 4789999987777889999986542211 0 0 1224567
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++.+||||||||++||+||+.+|+++| +||||+|+|+.++.
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~lll--lDEPt~~LD~~~~~ 152 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYL--LDEPSAYLDVEQRL 152 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 8999999888899999999999999999999999999998 99999999987543
No 236
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.5e-22 Score=152.75 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=96.6
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++++|+|+.... ..+++|+|+++|.++.. ...++.++|++|++.+++ .|+.+|+.+....+. .......
T Consensus 45 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~ 121 (252)
T PRK14255 45 STYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVL 121 (252)
T ss_pred HHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHH
Confidence 37888898876421 00258999999998742 123467999999988887 699999977543221 0111222
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.+.++.+++. +..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 122 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll--lDEPt~~LD~~~~~ 185 (252)
T PRK14255 122 DEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL--LDEPTSALDPISST 185 (252)
T ss_pred HHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHHH
Confidence 34566778888763 45678899999999999999999999999888 99999999987543
No 237
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.2e-22 Score=145.38 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=104.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC--c-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--K-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.|++++|.=+..| .+|+..+.|.... + ...|+.+|+|||+..++|.+||.||+..+ ..+. .+++.
T Consensus 42 ssllr~lnlle~p----~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv-~gl~~ 115 (242)
T COG4161 42 SSLLRVLNLLEMP----RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRV-LGLSK 115 (242)
T ss_pred HHHHHHHHHHhCC----CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHH-hCCCH
Confidence 4677777766664 7999999886432 1 13467799999999999999999998653 2222 24567
Q ss_pred HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.+...++.++++++.+.+..|+.+-.|||||+|||+|||||+.+|++++ +||||+.+||-
T Consensus 116 ~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvll--fdeptaaldpe 175 (242)
T COG4161 116 DQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLL--FDEPTAALDPE 175 (242)
T ss_pred HHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEe--ecCcccccCHH
Confidence 7788889999999999999999999999999999999999999999998 99999999985
No 238
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.9e-22 Score=153.89 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=96.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECC------EecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNG------LEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G------~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.+++++|+|++.| ++|+|.++| .++.. ...++.++|++|++.+++..|+.+|+.+...... ....
T Consensus 50 STLl~~iaG~~~~----~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~ 123 (257)
T PRK14246 50 STLLKVLNRLIEI----YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEK 123 (257)
T ss_pred HHHHHHHhCCCCC----CcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCH
Confidence 4678888888774 675555554 54432 1235678999999998888999999987643221 1122
Q ss_pred HHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 80 VERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+.+.++++.+++. +..++.+..||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~lll--lDEPt~~LD~~~~ 189 (257)
T PRK14246 124 REIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL--MDEPTSMIDIVNS 189 (257)
T ss_pred HHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCCccCCHHHH
Confidence 23445678899999996 34678899999999999999999999999988 9999999998853
No 239
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=3.4e-23 Score=173.82 Aligned_cols=124 Identities=26% Similarity=0.267 Sum_probs=90.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
||+++|..++...++|++|+|.++|.++... .+++.++||||++.+|+. |++||+.++... ...+++.
T Consensus 372 sGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~~---------~~~e~i~ 441 (529)
T TIGR02868 372 SGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRPD---------ATDEELW 441 (529)
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCCC---------CCHHHHH
Confidence 3444444444444446999999999987643 456789999999999876 999999875211 1223456
Q ss_pred HHHHHcCCCc-------cccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 88 ALLKELGLLK-------CKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 88 ~~l~~~~L~~-------~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
++++..++.+ ..|+.+ .+||||||||++||||++.+|+++| |||||+++|+.+...
T Consensus 442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili--LDE~TSaLD~~te~~ 508 (529)
T TIGR02868 442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL--LDEPTEHLDAGTESE 508 (529)
T ss_pred HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHHH
Confidence 6677666643 224433 5699999999999999999999988 999999999875443
No 240
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=166.37 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=98.4
Q ss_pred HHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 11 GIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
+.++|.|+..+....++|+|.|+|.++... .+...++|+||++.. -|-+|+.+.+......+.. ....+
T Consensus 51 ~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~e 128 (539)
T COG1123 51 LALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAE 128 (539)
T ss_pred HHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHH
Confidence 344555555543333589999999976432 123668999999753 4557888888776655532 23667
Q ss_pred HHHHHHHHHHHcCCCcccc--CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLKCKN--SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~--~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.++|.+... +++++||||||||++||+||+.+|+++| +||||.++|+++|.
T Consensus 129 a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLI--aDEPTTaLDvt~q~ 191 (539)
T COG1123 129 ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI--ADEPTTALDVTTQA 191 (539)
T ss_pred HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEE--ECCCccccCHHHHH
Confidence 7788999999999976554 5999999999999999999999999887 99988888776553
No 241
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.9e-22 Score=155.18 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=96.8
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.+++++|+|+..+.. .|++|+|.++|.++.. ...++.++|+||++.+++. |+.+|+.+....+ .... ..
T Consensus 60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~~-~~ 134 (274)
T PRK14265 60 STLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYKG-NL 134 (274)
T ss_pred HHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---CchH-HH
Confidence 378888998876310 0258999999998742 1235679999999887764 9999997654322 1111 22
Q ss_pred HHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++.
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll--LDEPt~~LD~~~~~ 198 (274)
T PRK14265 135 DELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLL--MDEPCSALDPISTR 198 (274)
T ss_pred HHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEE--EeCCcccCCHHHHH
Confidence 34466778888763 45678899999999999999999999999998 99999999987543
No 242
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.1e-22 Score=150.24 Aligned_cols=105 Identities=28% Similarity=0.350 Sum_probs=84.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++.+. .|++|+|.++|.++... ..++.++|++|++.+++.+|+.+++.+.... .
T Consensus 47 STLl~~l~G~~~~~-~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~-------- 111 (202)
T cd03233 47 STLLKALANRTEGN-VSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC------K-------- 111 (202)
T ss_pred HHHHHHhcccCCCC-CCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh------c--------
Confidence 36788888887621 14899999999987542 3456789999999888999999998754211 0
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++..||+||+||++||+|++.+|+++| +||||+|+|+.+
T Consensus 112 ------------~~~~~~~LS~Ge~qrl~laral~~~p~lll--lDEPt~~LD~~~ 153 (202)
T cd03233 112 ------------GNEFVRGISGGERKRVSIAEALVSRASVLC--WDNSTRGLDSST 153 (202)
T ss_pred ------------cccchhhCCHHHHHHHHHHHHHhhCCCEEE--EcCCCccCCHHH
Confidence 467788999999999999999999999888 999999999763
No 243
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=1.6e-22 Score=167.52 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=97.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEec--Ccc---cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEV--EKN---LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i--~~~---~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
|+.|+|+|+.. |++|+|.++|.+. +.. ..++.+.++||++. +.|..|+.+.+......+... .....
T Consensus 332 Tlar~i~gL~~----P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~ 405 (539)
T COG1123 332 TLARILAGLLP----PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAER 405 (539)
T ss_pred HHHHHHhCCCC----CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHH
Confidence 44455555555 6999999999873 211 23456788999864 578999999988766554321 23445
Q ss_pred HHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++.++++.++|.+ .+++++++||||||||++|||||+.+|+++| +||||+.|||..+.
T Consensus 406 ~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli--~DEp~SaLDvsvqa 466 (539)
T COG1123 406 RARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI--LDEPVSALDVSVQA 466 (539)
T ss_pred HHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEE--ecCCccccCHHHHH
Confidence 567999999999986 6899999999999999999999999999888 99988888876443
No 244
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=1.6e-22 Score=164.51 Aligned_cols=128 Identities=22% Similarity=0.199 Sum_probs=108.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.||+|+|+|.+.| ++|+|+++|+++.-. ..+..||+|+|++.+++++||.||+..+.........+.....+
T Consensus 44 STLm~iL~G~~~P----~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~ 119 (501)
T COG3845 44 STLMKILFGLYQP----DSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA 119 (501)
T ss_pred HHHHHHHhCcccC----CcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHH
Confidence 4789999999985 899999999987421 33566899999999999999999998765432111245667788
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++++.++.|+.-..+.++.+||-|+||||+|.+||..+|+++| |||||+=|.|..
T Consensus 120 ~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI--LDEPTaVLTP~E 175 (501)
T COG3845 120 RIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI--LDEPTAVLTPQE 175 (501)
T ss_pred HHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE--EcCCcccCCHHH
Confidence 99999999999988999999999999999999999999999887 999999998873
No 245
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.9e-23 Score=155.72 Aligned_cols=123 Identities=19% Similarity=0.189 Sum_probs=90.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH-
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR- 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~- 84 (156)
.|++++|+|+.. |++|+|.++|.++... ..++.++|++|++.+++ .|+.+|+.+.... .......+
T Consensus 41 STLl~~i~Gl~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~ 110 (236)
T cd03253 41 STILRLLFRFYD----VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEA 110 (236)
T ss_pred HHHHHHHhcccC----CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHH
Confidence 378888898877 4899999999987532 33566899999988775 6999998764211 11111111
Q ss_pred ----HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 ----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ----~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++.+ ++....++++.+||+|||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 111 ~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll--lDEP~~~LD~~~~ 173 (236)
T cd03253 111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL--LDEATSALDTHTE 173 (236)
T ss_pred HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 122333444 44445567789999999999999999999999998 9999999998753
No 246
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.88 E-value=3.9e-22 Score=153.19 Aligned_cols=127 Identities=15% Similarity=0.050 Sum_probs=95.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEe-----cCccc-------ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLE-----VEKNL-------MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMD 74 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~-----i~~~~-------~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~ 74 (156)
.|++++|+|+.. |++|+|+++|.+ +.... .++.++|++|++. +++..++.+++.+......
T Consensus 43 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~- 117 (253)
T TIGR02323 43 STLLGCLAGRLA----PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG- 117 (253)
T ss_pred HHHHHHHhCCCC----CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc-
Confidence 367888888876 489999999976 43211 1345899999974 3456788888764321110
Q ss_pred cCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 75 RNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..........+.++++.+++. ...++.+.+||||||||++||+||+.+|+++| +||||+|+|+.+.
T Consensus 118 -~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vll--lDEP~~~LD~~~~ 184 (253)
T TIGR02323 118 -ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVF--MDEPTGGLDVSVQ 184 (253)
T ss_pred -ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHHHH
Confidence 011112345678899999997 47789999999999999999999999999998 9999999998754
No 247
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.9e-22 Score=153.05 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=98.1
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC-cHHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-HHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~-~~~~ 81 (156)
.|++++|+|+..+. -.+.+|+|.++|+++.. ...++.++|++|++.+++ .|+.||+.+..... .. ....
T Consensus 47 STLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~---~~~~~~~ 122 (261)
T PRK14258 47 STFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV---GWRPKLE 122 (261)
T ss_pred HHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc---CCCcHHH
Confidence 47888999988751 00138999999998631 123566899999988877 89999997653221 11 1223
Q ss_pred HHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++. +..++.+.+|||||+||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vll--LDEP~~~LD~~~~ 186 (261)
T PRK14258 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL--MDEPCFGLDPIAS 186 (261)
T ss_pred HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 345677889999874 34688899999999999999999999999998 9999999998754
No 248
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=2.4e-22 Score=183.61 Aligned_cols=134 Identities=25% Similarity=0.274 Sum_probs=104.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhccc----CCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDR----NLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~ 82 (156)
.|++|+|+|+..+...|++|+|.++|.++... ..++.++|++|++.+++.+||.|++.+....+.+. .....+.
T Consensus 101 STLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 180 (1394)
T TIGR00956 101 STLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY 180 (1394)
T ss_pred HHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHH
Confidence 47899999997543346899999999987532 23556999999999999999999999876554221 1222222
Q ss_pred H-HHHHHHHHHcCCCccccCc-----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 A-RTVDALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~-~~~~~~l~~~~L~~~~~~~-----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
. +.++++++.++|.+..|++ +++|||||||||+||++|+.+|++++ |||||+|||+.++.
T Consensus 181 ~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll--lDEPTsgLD~~~~~ 246 (1394)
T TIGR00956 181 AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC--WDNATRGLDSATAL 246 (1394)
T ss_pred HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE--EeCCCCCcCHHHHH
Confidence 2 2346789999998877665 46799999999999999999999888 99999999987543
No 249
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.88 E-value=6.3e-22 Score=149.83 Aligned_cols=116 Identities=17% Similarity=0.094 Sum_probs=90.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|+++|.++... .....+++..|+.+|+.+....+ ........+++.+
T Consensus 62 STLl~~l~G~~~----p~~G~i~~~g~~~~~~---------~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ 125 (224)
T cd03220 62 STLLRLLAGIYP----PDSGTVTVRGRVSSLL---------GLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDE 125 (224)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEchhh---------cccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 367888888876 5899999999876311 11123346789999997764322 1223334456788
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.+
T Consensus 126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll--lDEP~~gLD~~~ 177 (224)
T cd03220 126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL--IDEVLAVGDAAF 177 (224)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHH
Confidence 8999999988899999999999999999999999999888 999999999864
No 250
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.88 E-value=7.7e-23 Score=155.73 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=89.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH-
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR- 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~- 84 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++ .|+.+++.+..... ......+
T Consensus 43 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~ 112 (238)
T cd03249 43 STVVSLLERFYD----PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEA 112 (238)
T ss_pred HHHHHHHhccCC----CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHH
Confidence 367888888876 4899999999887431 23456999999987776 59999987542111 1111111
Q ss_pred ----HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 ----TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ----~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++.+ ++....++.+.+||||||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll--lDEP~~gLD~~~~ 175 (238)
T cd03249 113 AKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILL--LDEATSALDAESE 175 (238)
T ss_pred HHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence 122333333 45555677889999999999999999999999888 9999999997643
No 251
>KOG0059|consensus
Probab=99.88 E-value=1.2e-22 Score=179.09 Aligned_cols=137 Identities=27% Similarity=0.442 Sum_probs=120.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
|.+++++|...| ++|+++++|.++... ..++.+||+||+..+.+.+|.+|++.++++.+ +...++.++.
T Consensus 606 T~f~mltG~~~~----t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~ 678 (885)
T KOG0059|consen 606 TTFKMLTGETKP----TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSA 678 (885)
T ss_pred hhHHHHhCCccC----CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHH
Confidence 667888888884 999999999998642 25778999999999999999999999998876 4455667778
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh----------------hheeecc
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS----------------ALFITTA 149 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~----------------~~~~~~~ 149 (156)
++.+++.+++.+..+++++.+|||+|+|+++|.|++.+|++++ ||||++|+||.+ ++.+|+|
T Consensus 679 v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~--LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSH 756 (885)
T KOG0059|consen 679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL--LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH 756 (885)
T ss_pred HHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE--ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 9999999999999999999999999999999999999999998 999999999873 5667888
Q ss_pred cccccc
Q psy16753 150 SSVEEE 155 (156)
Q Consensus 150 ~~~~~~ 155 (156)
|-.|.|
T Consensus 757 sMeE~E 762 (885)
T KOG0059|consen 757 SMEEAE 762 (885)
T ss_pred CHHHHH
Confidence 877766
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.9e-22 Score=155.62 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=99.6
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc--------
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-------- 74 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-------- 74 (156)
.|++++|+|+..+. ..|++|+|+++|.++... ..++.++|++|++.+++ .|+.+|+.+.......
T Consensus 85 STLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~ 163 (305)
T PRK14264 85 STFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLAR 163 (305)
T ss_pred HHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhccccccccccc
Confidence 37889999987531 125899999999987421 23467999999988777 4999999875432100
Q ss_pred -cCCc-HHHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 75 -RNLH-HVERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 75 -~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.... .....+.+.++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLL--LDEPtsgLD~~~~~ 237 (305)
T PRK14264 164 LLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVIL--MDEPASALDPIATS 237 (305)
T ss_pred ccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 0011 122345678889999874 45588899999999999999999999999998 99999999987553
No 253
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.87 E-value=7.8e-22 Score=169.25 Aligned_cols=128 Identities=21% Similarity=0.202 Sum_probs=104.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.+++++|+|++. |++|+|.++|+++.... .++.++|++|++.+++..|+.||+.+..... ......
T Consensus 48 STLl~~i~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 120 (648)
T PRK10535 48 STLMNILGCLDK----PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQ 120 (648)
T ss_pred HHHHHHHhcCCC----CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 367888888876 58999999999876421 1456899999999999999999998654321 122334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
..+++.++++.+++.+..++++.+||+||+||+.|||||+.+|+++| +||||+|+|+.++..
T Consensus 121 ~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLl--lDEP~~gLD~~s~~~ 182 (648)
T PRK10535 121 RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL--ADEPTGALDSHSGEE 182 (648)
T ss_pred HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHHHH
Confidence 45678899999999988999999999999999999999999999888 999999999875543
No 254
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.5e-22 Score=156.62 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=98.3
Q ss_pred HHHHHHHhhhhhcC-CCCcceEEEECCEecCc-----ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc-HHH
Q psy16753 9 FSGIHLLGQRVVHE-LSDVDGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-HVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~-~~~~~G~I~~~G~~i~~-----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~ 81 (156)
.+++++|+|+..+. -.|++|+|.++|.++.. ...++.++|+||++.+++ .|+++|+.|..... ... ...
T Consensus 122 STLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~ 197 (329)
T PRK14257 122 STFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKI 197 (329)
T ss_pred HHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHH
Confidence 36788888887531 01479999999999852 134567999999998875 69999998754321 111 112
Q ss_pred HHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+.+.++++.+++. ...+++..+||||||||++||||++.+|+++| +||||+|+|+.+..
T Consensus 198 ~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlL--LDEPts~LD~~~~~ 262 (329)
T PRK14257 198 LEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLL--MDEPTSALDPIATA 262 (329)
T ss_pred HHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence 233467788888873 34678899999999999999999999999988 99999999987543
No 255
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.87 E-value=1.7e-22 Score=174.30 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=90.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++|+|+|++. |++|+|++||.++... ..++.+||++|++.+|+. |++||+.++.. ...+++
T Consensus 494 TLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~----------~~~e~i 558 (686)
T TIGR03797 494 TLLRLLLGFET----PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP----------LTLDEA 558 (686)
T ss_pred HHHHHHhCCCC----CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC----------CCHHHH
Confidence 56666666666 5899999999998642 467889999999998875 99999986421 112345
Q ss_pred HHHHHHcCCCccc-------cCc----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCK-------NSV----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~-------~~~----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+.. |+. ..+||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 559 ~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLi--LDEpTS~LD~~te 624 (686)
T TIGR03797 559 WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL--FDEATSALDNRTQ 624 (686)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence 5667776664322 332 35799999999999999999999988 9999999998754
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=1e-22 Score=175.07 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=90.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||+++|++++.+.+.|++|+|++||.|+... ..|+.+|||+|++.+|.. |++||+.++.... ..+.+
T Consensus 510 sGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~---------~~e~i 579 (709)
T COG2274 510 SGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEA---------TDEEI 579 (709)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCC---------CHHHH
Confidence 5556666666655667999999999998643 568999999999998765 9999998653211 11233
Q ss_pred HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++..+.. ........+||||||||++||||+.++|+++| |||||+++|+.+..
T Consensus 580 ~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl--LDEaTSaLD~~sE~ 646 (709)
T COG2274 580 IEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL--LDEATSALDPETEA 646 (709)
T ss_pred HHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE--EeCcccccCHhHHH
Confidence 3444444332 22233346799999999999999999999988 99999999987543
No 257
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.87 E-value=1.5e-21 Score=149.73 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccc-eeeEecCCCCCCCCCCHHHHHHHHHHhhcc----cCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVK-VSGFVPQHDLTVDTLTVHEHMTLMARLKMD----RNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~-~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~ 80 (156)
.|++++|+|+.. ++|++|+|+++|.++... ..++ .++|++|++.+++..++.+++.+....... ......
T Consensus 47 STLl~~i~Gl~~--~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 124 (252)
T CHL00131 47 STLSKVIAGHPA--YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPL 124 (252)
T ss_pred HHHHHHHcCCCc--CcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHH
Confidence 367888888731 226899999999987542 1122 478999999888989999998764322100 001112
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+.++++.+++. ...++.+. +|||||+||+.||+|++.+|+++| +||||+|+|+.+.
T Consensus 125 ~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--lDEPt~~LD~~~~ 187 (252)
T CHL00131 125 EFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAI--LDETDSGLDIDAL 187 (252)
T ss_pred HHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHHH
Confidence 2334677889999997 46788887 599999999999999999999998 9999999997744
No 258
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=4.5e-22 Score=149.75 Aligned_cols=119 Identities=16% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.++ ..|+.+|+.+.... ..
T Consensus 41 STLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~-- 107 (218)
T cd03290 41 SSLLLAILGEMQ----TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK-- 107 (218)
T ss_pred HHHHHHHhccCC----CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH--
Confidence 367888888876 4899999999876421 1245689999998877 57999998754211 11
Q ss_pred HHHHHHHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+...++++.+++.+ ..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 108 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~~ 177 (218)
T cd03290 108 --QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVF--LDDPFSALDIHLSD 177 (218)
T ss_pred --HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEE--EeCCccccCHHHHH
Confidence 12234455555432 2356789999999999999999999999888 99999999988654
No 259
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=8.1e-22 Score=162.33 Aligned_cols=128 Identities=21% Similarity=0.153 Sum_probs=107.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhc-ccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~ 83 (156)
.||+|+|+|.+.| ++|+|+++|+..... ....-|+.++|+..++|++||.||++++..... ....+.+...
T Consensus 48 STLmKiLsGv~~p----~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~ 123 (500)
T COG1129 48 STLMKILSGVYPP----DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR 123 (500)
T ss_pred HHHHHHHhCcccC----CCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHH
Confidence 4788999998885 899999999987532 223447899999999999999999976654332 1235677888
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++.++++.+++....+.++.+||.||||.|+||||++.+++++| |||||+.|++..
T Consensus 124 ~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI--lDEPTaaLt~~E 180 (500)
T COG1129 124 RRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI--LDEPTAALTVKE 180 (500)
T ss_pred HHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCcccCCHHH
Confidence 999999999999655899999999999999999999999999887 999999998664
No 260
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=2.8e-22 Score=151.00 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=88.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|+.. |++|+|.++|.++.. ..+++.++|++|++.+++ .|+.+|+.+... .. .+++
T Consensus 45 TLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~ 109 (221)
T cd03244 45 SLLLALFRLVE----LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEEL 109 (221)
T ss_pred HHHHHHHcCCC----CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHH
Confidence 67888888876 589999999998753 234567999999988765 599999853211 11 1234
Q ss_pred HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++.+++.+. .++.+.+||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 110 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll--lDEP~~~LD~~~~ 175 (221)
T cd03244 110 WQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILV--LDEATASVDPETD 175 (221)
T ss_pred HHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHH
Confidence 444555555433 356889999999999999999999999888 9999999998754
No 261
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.87 E-value=9.5e-22 Score=145.85 Aligned_cols=97 Identities=37% Similarity=0.538 Sum_probs=80.8
Q ss_pred HHHHHHHhhhh--hcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRV--VHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~--~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+++++|+|++ . |++|+|.++|.++.....++.++|++|++.+++..|+.+++.+....
T Consensus 49 StLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------- 109 (194)
T cd03213 49 STLLNALAGRRTGL----GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------- 109 (194)
T ss_pred HHHHHHHhCCCCCC----CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------
Confidence 36788888887 5 58999999999886534456799999999888889999998643210
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
. +||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 110 ~-----------------~LS~G~~qrv~laral~~~p~ill--lDEP~~~LD~~~~ 147 (194)
T cd03213 110 R-----------------GLSGGERKRVSIALELVSNPSLLF--LDEPTSGLDSSSA 147 (194)
T ss_pred c-----------------cCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcCCCHHHH
Confidence 0 899999999999999999999888 9999999997743
No 262
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=3.7e-22 Score=169.17 Aligned_cols=119 Identities=24% Similarity=0.305 Sum_probs=92.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|+++|.++... .+++.++|++|++.+|+. |++||+.++.. . ...+.+
T Consensus 381 TL~~ll~g~~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~----~~~~~i 446 (574)
T PRK11160 381 TLLQLLTRAWD----PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----N----ASDEAL 446 (574)
T ss_pred HHHHHHhcCCC----CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----c----cCHHHH
Confidence 55666666665 5899999999988642 457789999999998875 99999976421 1 123456
Q ss_pred HHHHHHcCCCccccC----------ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKNS----------VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~----------~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+..++ ...+||||||||++||||++.+|+++| +||||+++|+.+..
T Consensus 447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ili--lDE~ts~lD~~t~~ 512 (574)
T PRK11160 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL--LDEPTEGLDAETER 512 (574)
T ss_pred HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHHH
Confidence 777888888654332 446799999999999999999999988 99999999987543
No 263
>KOG0058|consensus
Probab=99.86 E-value=1.7e-22 Score=170.38 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=93.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH---
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA--- 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~--- 83 (156)
+|+++++.++...|.|++|+|.+||.|+... .+++++|+|.|+|.+|.. |+.|||.++... ...++..
T Consensus 505 sGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~-----~t~e~i~~AA 578 (716)
T KOG0058|consen 505 SGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDN-----ATDEEIEAAA 578 (716)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCC-----CCHHHHHHHH
Confidence 5677777777777778999999999998653 467899999999999876 999999987541 1111111
Q ss_pred --HHHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 --RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 --~~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+.+.+..+ |.+.....+-.+||||||||++|||||+.+|+++| |||-|++||..+.
T Consensus 579 k~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI--LDEATSALDaeSE 640 (716)
T KOG0058|consen 579 KMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI--LDEATSALDAESE 640 (716)
T ss_pred HHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE--EechhhhcchhhH
Confidence 1233344433 11223344446899999999999999999999887 9998888886643
No 264
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=2.2e-22 Score=174.13 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=88.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++|+|+|++. |++|+|++||.++... ..++.++|++|++.+|+. |++||+.++.. .. ..+++
T Consensus 520 TLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~----~~~~i 585 (710)
T TIGR03796 520 TIAKLVAGLYQ----PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TI----PDADL 585 (710)
T ss_pred HHHHHHhcCCC----CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CC----CHHHH
Confidence 56666777666 5899999999998642 467889999999998865 99999975421 11 12334
Q ss_pred HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+ .......+||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 586 ~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili--LDEptS~LD~~te 651 (710)
T TIGR03796 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI--LDEATSALDPETE 651 (710)
T ss_pred HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE--EECccccCCHHHH
Confidence 45555555532 2223346799999999999999999999998 9999999998643
No 265
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.86 E-value=1.8e-21 Score=148.94 Aligned_cols=132 Identities=13% Similarity=0.047 Sum_probs=92.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHH-hhccc---CCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKMDR---NLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~~~~---~~~~~ 80 (156)
.|++++|+|++. ++|++|+|.++|.++... . .+..++|++|++.+++..+..+++.+... ..... .....
T Consensus 41 STLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (248)
T PRK09580 41 STLSATLAGRED--YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRF 118 (248)
T ss_pred HHHHHHHcCCcc--CCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHH
Confidence 367888888852 115899999999887432 1 23458999999888777666555432211 10000 01111
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.....+.+.++.+++. ...++.+. +||||||||++||+|++.+|+++| |||||+|+|+.++.
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--LDEPt~~LD~~~~~ 182 (248)
T PRK09580 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI--LDESDSGLDIDALK 182 (248)
T ss_pred HHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHHH
Confidence 2345677889999995 45566665 799999999999999999999998 99999999987543
No 266
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=4.8e-22 Score=167.49 Aligned_cols=122 Identities=24% Similarity=0.228 Sum_probs=90.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH---
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA--- 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~--- 83 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+. |++||+.+... .....+..
T Consensus 359 TL~~ll~g~~~----~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~ 428 (544)
T TIGR01842 359 TLARLIVGIWP----PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAA 428 (544)
T ss_pred HHHHHHhCCCC----CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHH
Confidence 56666777666 5899999999987542 456789999999998876 99999974321 11111111
Q ss_pred --HHHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 --RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 --~~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+.+.++.+ |++...+....+||||||||++||||++.+|+++| +||||+|+|+.+.
T Consensus 429 ~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili--lDEpts~LD~~~~ 490 (544)
T TIGR01842 429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV--LDEPNSNLDEEGE 490 (544)
T ss_pred HHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccccCHHHH
Confidence 1233455555 55555566678899999999999999999999888 9999999997643
No 267
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.86 E-value=2.3e-22 Score=170.45 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=88.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|+++|.++... .+++.++|+||++.+|+. |+++|+.++.. ... ..+++
T Consensus 384 TLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~----~~~~i 450 (582)
T PRK11176 384 TIANLLTRFYD----IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQY----SREQI 450 (582)
T ss_pred HHHHHHHhccC----CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC----CCC----CHHHH
Confidence 56666666666 5899999999998642 457789999999998874 99999976421 001 12345
Q ss_pred HHHHHHcCCCc-------cccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLK-------CKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~-------~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+ ..|+.+ .+||||||||++||||++++|+++| +||||+++|+.+.
T Consensus 451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili--lDEptsaLD~~t~ 516 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI--LDEATSALDTESE 516 (582)
T ss_pred HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE--EECccccCCHHHH
Confidence 55566655432 223333 5699999999999999999999988 9999999998643
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.9e-21 Score=149.47 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=96.8
Q ss_pred HHHHHHHhhhhhcCC-CCcceEEEECCEecCc-------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc-H
Q psy16753 9 FSGIHLLGQRVVHEL-SDVDGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH-H 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~-~~~~G~I~~~G~~i~~-------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~ 79 (156)
.|++++|+|+..|.. .+++|+|.++|.++.. ...++.++|++|++.+++. |+.+|+.+..... ... .
T Consensus 56 STLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~ 131 (265)
T PRK14252 56 STFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRR 131 (265)
T ss_pred HHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChH
Confidence 378889999876420 0279999999987531 1235668999999988876 9999997654321 111 1
Q ss_pred HHHHHHHHHHHHHcCCC----ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 80 VERARTVDALLKELGLL----KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+.+.++++.+++. +..++.+.+||+||+||+.||+|++.+|+++| +||||+|+|+.+.
T Consensus 132 ~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEPt~gLD~~~~ 197 (265)
T PRK14252 132 SILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILL--FDEPTSALDPIAT 197 (265)
T ss_pred HHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCCccCCHHHH
Confidence 12335677788888763 45678899999999999999999999999988 9999999997743
No 269
>KOG0055|consensus
Probab=99.86 E-value=2e-22 Score=177.88 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=92.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH--
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-- 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-- 84 (156)
||++++.+++...+.|++|+|++||.++... ..|.++|.|.|+|.+|. .|+.||+.++..-. ...+..+
T Consensus 390 sGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~da-----t~~~i~~a~ 463 (1228)
T KOG0055|consen 390 SGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDA-----TREEIEEAA 463 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcc-----cHHHHHHHH
Confidence 7788888888887788999999999998653 45788999999998765 69999998764211 1111111
Q ss_pred ---HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 85 ---TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 85 ---~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
.+.+.+..+ |.+......-.+||||||||++|||||+.+|++|| |||||++||+.+...
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL--LDEaTSaLD~~se~~ 527 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL--LDEATSALDAESERV 527 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE--ecCcccccCHHHHHH
Confidence 112222222 12222233335699999999999999999999988 999999999887654
No 270
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=5.5e-22 Score=168.53 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=90.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++.. ...++.++|+||++.+|++ |+++|+.++.. . ..+++
T Consensus 382 TLl~lL~gl~~----p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~----~d~~i 446 (592)
T PRK10790 382 TLASLLMGYYP----LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------I----SEEQV 446 (592)
T ss_pred HHHHHHhcccC----CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC------C----CHHHH
Confidence 56666666666 589999999998864 3567889999999999886 99999987521 1 12345
Q ss_pred HHHHHHcCCCcc-------ccC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKC-------KNS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~-------~~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+. .|. ...+||||||||++|||||+.+|+++| +||||+++|+.+..
T Consensus 447 ~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill--lDEpts~LD~~t~~ 513 (592)
T PRK10790 447 WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI--LDEATANIDSGTEQ 513 (592)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence 666666665432 233 335799999999999999999999888 99999999987543
No 271
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=8.2e-22 Score=153.49 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=94.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.+++++|+|++. ++|+|+++|.++... ..++.++|+||++.+|+. |+++|+.... ... .++
T Consensus 44 STLl~~L~gl~~-----~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~ 107 (275)
T cd03289 44 STLLSAFLRLLN-----TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEE 107 (275)
T ss_pred HHHHHHHhhhcC-----CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHH
Confidence 367888888875 489999999987532 346679999999998875 9999985321 011 235
Q ss_pred HHHHHHHcCCCccccCccCc-----------CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~-----------LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+.++.+++.+..++++.+ ||+|||||++||||++.+|+++| +||||+|+|+.+.
T Consensus 108 ~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill--lDEpts~LD~~~~ 174 (275)
T cd03289 108 IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL--LDEPSAHLDPITY 174 (275)
T ss_pred HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECccccCCHHHH
Confidence 66788899998777777766 99999999999999999999998 9999999998743
No 272
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.86 E-value=1.5e-21 Score=136.59 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=88.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.+++++|+|...+ ++|+|.++|.++.. ...++.++|++|+..+++..|+.++ ...++
T Consensus 25 StLl~~l~g~~~~----~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~----------------~~~~~ 84 (137)
T PF00005_consen 25 STLLKALAGLLPP----DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN----------------ESDER 84 (137)
T ss_dssp HHHHHHHTTSSHE----SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH----------------HHHHH
T ss_pred ccceeeecccccc----cccccccccccccccccccccccccccccccccccccccccc----------------ccccc
Confidence 3678888888885 89999999999875 2456779999999888899999988 12245
Q ss_pred HHHHHHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCC
Q psy16753 86 VDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~ 136 (156)
++++++.+++.+..++.+ .+||+|||||++||+|++.+|+++| +||||+
T Consensus 85 ~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~lll--lDEPt~ 137 (137)
T PF00005_consen 85 IEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLL--LDEPTN 137 (137)
T ss_dssp HHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEE--EESTTT
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEE--EeCCCC
Confidence 778888888876555555 9999999999999999999999998 999986
No 273
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.86 E-value=1.4e-21 Score=150.31 Aligned_cols=111 Identities=25% Similarity=0.237 Sum_probs=87.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCC--CHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL--TVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|+.. |++|+|.++|. ..++|+||++.+++.+ ++.+++.+. ... ..+++
T Consensus 44 STLl~~i~Gl~~----p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~ 101 (251)
T PRK09544 44 STLVRVVLGLVA----PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDI 101 (251)
T ss_pred HHHHHHHhCCCC----CCceEEEECCc--------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHH
Confidence 367888888876 48999999872 3589999998766553 565554321 011 12456
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 102 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 156 (251)
T PRK09544 102 LPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV--LDEPTQGVDVNGQ 156 (251)
T ss_pred HHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence 788999999988899999999999999999999999999888 9999999997754
No 274
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.86 E-value=4.9e-22 Score=166.81 Aligned_cols=119 Identities=23% Similarity=0.242 Sum_probs=89.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++|+|+|++. |++|+|.++|.++.. ...++.++|++|++.+|+. |++||+.++... . ..+++
T Consensus 363 TL~~ll~g~~~----~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~-----~----~~~~i 428 (529)
T TIGR02857 363 TLLNLLLGFVD----PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPD-----A----SDAEI 428 (529)
T ss_pred HHHHHHhcCCC----CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCC-----C----CHHHH
Confidence 56666666666 589999999998864 2457789999999998864 999999764211 1 12345
Q ss_pred HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++..++.+. ......+||||||||++||||++.+|+++| +||||+++|+.+..
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili--lDE~ts~lD~~~~~ 495 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL--LDEPTAHLDAETEA 495 (529)
T ss_pred HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHH
Confidence 566666665432 223346799999999999999999999998 99999999987544
No 275
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.9e-21 Score=141.72 Aligned_cols=90 Identities=27% Similarity=0.387 Sum_probs=76.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+++++|+|++. |++|+|+++|.++... ..++.++|+||++.+++..|+.+++.
T Consensus 40 StLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------------------- 95 (173)
T cd03230 40 TTLIKIILGLLK----PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-------------------- 95 (173)
T ss_pred HHHHHHHhCCCC----CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--------------------
Confidence 367888888876 4899999999987532 33567899999988888889988763
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 96 -------------------LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~ 131 (173)
T cd03230 96 -------------------LSGGMKQRLALAQALLHDPELLI--LDEPTSGLDPESR 131 (173)
T ss_pred -------------------cCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence 99999999999999999999998 9999999997743
No 276
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=6.4e-21 Score=147.72 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=90.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|. +++++|...+.+.+|+.+|+.+..... +.........+..
T Consensus 64 STLlk~L~Gl~~----p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ 126 (264)
T PRK13546 64 STLSNIIGGSLS----PTVGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPK 126 (264)
T ss_pred HHHHHHHhCCcC----CCceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 378888888887 48999999985 235566665667789999987643322 1233344455678
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+++.+++.+..++++.+||+||+||++||+|++.+|+++| |||||+|+|+.
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLl--LDEPt~gLD~~ 177 (264)
T PRK13546 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV--IDEALSVGDQT 177 (264)
T ss_pred HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEE--EeCccccCCHH
Confidence 8899999888899999999999999999999999999888 99999999985
No 277
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.86 E-value=5.6e-22 Score=167.77 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=89.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART- 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~- 85 (156)
||+++|..++...++|++|+|.+||.++... .+++.+++|||++.+|. -|+++|+.++... ...++..+.
T Consensus 366 sGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~-----at~eei~~a~ 439 (567)
T COG1132 366 SGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD-----ATDEEIEEAL 439 (567)
T ss_pred CCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC-----CCHHHHHHHH
Confidence 3444444444444446899999999998643 56888999999999988 6999999876421 111122222
Q ss_pred ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+.+.++.+ |++.........||||||||++||||++.+|+++| |||||+++|+.+
T Consensus 440 k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI--LDEaTSalD~~t 500 (567)
T COG1132 440 KLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI--LDEATSALDTET 500 (567)
T ss_pred HHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE--EeccccccCHHh
Confidence 22334443 33333344445799999999999999999999888 999999999875
No 278
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=5.1e-22 Score=171.94 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=88.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.+||.++... ..++.++|++|++.+|+. |++||+.++... .. .+++
T Consensus 522 TLl~lL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~-----~~----~e~i 587 (711)
T TIGR00958 522 TVAALLQNLYQ----PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD-----TP----DEEI 587 (711)
T ss_pred HHHHHHHhccC----CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC-----CC----HHHH
Confidence 56666666666 5899999999998642 456789999999998864 999999865311 11 2345
Q ss_pred HHHHHHcCCCcc-------ccC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKC-------KNS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~-------~~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++..++.+. .|+ ...+||||||||++||||++++|+++| |||||+++|+.+
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI--LDEpTSaLD~~t 652 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI--LDEATSALDAEC 652 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EEccccccCHHH
Confidence 555666555322 233 345799999999999999999999988 999999999864
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.2e-21 Score=160.74 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=95.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCC---CCCCCCCHHHHHHHHH-H-hhcccC-Cc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHD---LTVDTLTVHEHMTLMA-R-LKMDRN-LH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~-~-~~~~~~-~~ 78 (156)
.|++++|+|+.. |++|+|+++|.++.... .++.++|+||+. .+++.+++.++..+.. . ...... ..
T Consensus 288 STLl~~l~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (491)
T PRK10982 288 TDIVETLFGIRE----KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLD 363 (491)
T ss_pred HHHHHHHcCCCc----CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccC
Confidence 367788888776 58999999999875321 245589999985 3577888877632211 0 100001 11
Q ss_pred HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.....+.+.++++.+++. +..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++.
T Consensus 364 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ill--LDEPt~gLD~~~~~ 428 (491)
T PRK10982 364 NSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILM--LDEPTRGIDVGAKF 428 (491)
T ss_pred cHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEE--EcCCCcccChhHHH
Confidence 223345678899999995 46799999999999999999999999999998 99999999987553
No 280
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.85 E-value=1e-21 Score=166.85 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=86.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++|+|+|++. |++|+|+++|.++... ..++.++|+||++.+|+. |+++|+.++.. ... .+++
T Consensus 376 TLl~lL~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----d~~i 441 (588)
T PRK13657 376 TLINLLQRVFD----PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DAT----DEEM 441 (588)
T ss_pred HHHHHHhcCcC----CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC-----CCC----HHHH
Confidence 56666666666 5899999999988642 457789999999998865 99999976421 111 1233
Q ss_pred HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++. .........||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili--LDEpts~LD~~t~ 507 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI--LDEATSALDVETE 507 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence 3444444432 22223345699999999999999999999998 9999999997643
No 281
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=2.9e-21 Score=141.86 Aligned_cols=94 Identities=26% Similarity=0.274 Sum_probs=77.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++ .+++..|+.||+.+...
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------- 104 (182)
T cd03215 40 TELAEALFGLRP----PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------- 104 (182)
T ss_pred HHHHHHHhCCCC----CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------
Confidence 367888888877 4899999999987542 2356799999985 46778899999864310
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+|||||++||+|++.+|+++| +||||+|+|+.++
T Consensus 105 ------------------------LS~G~~qrl~la~al~~~p~lll--lDEP~~~LD~~~~ 140 (182)
T cd03215 105 ------------------------LSGGNQQKVVLARWLARDPRVLI--LDEPTRGVDVGAK 140 (182)
T ss_pred ------------------------cCHHHHHHHHHHHHHccCCCEEE--ECCCCcCCCHHHH
Confidence 99999999999999999999988 9999999998743
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=1.4e-21 Score=162.87 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=91.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCC--C-C-----CCCHHHHHHHHHHhhcccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLT--V-D-----TLTVHEHMTLMARLKMDRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~--~-~-----~ltv~e~l~~~~~~~~~~~~ 77 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.++|++|++.. + + .+++.+++.+.
T Consensus 43 STLl~~l~G~~~----p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------- 109 (490)
T PRK10938 43 SALARALAGELP----LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------- 109 (490)
T ss_pred HHHHHHHhccCC----CCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc---------
Confidence 378888888877 4899999999776421 223458999998542 1 1 34565554321
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 110 --~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~ 171 (490)
T PRK10938 110 --VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI--LDEPFDGLDVASR 171 (490)
T ss_pred --hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHHH
Confidence 1234567889999999888899999999999999999999999999988 9999999998744
No 283
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.85 E-value=6.1e-22 Score=171.30 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|+++|.++.. ..+++.+||++|++.+|+. |++||+.++... ..+ .+++
T Consensus 515 TLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~----~~~i 581 (708)
T TIGR01193 515 TLAKLLVGFFQ----ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVS----QDEI 581 (708)
T ss_pred HHHHHHhccCC----CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC----CCC----HHHH
Confidence 56666666666 589999999998754 3567889999999998876 999999865211 111 2234
Q ss_pred HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++. ........+||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili--LDE~Ts~LD~~te 647 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI--LDESTSNLDTITE 647 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE--EeCccccCCHHHH
Confidence 4555555442 22233346799999999999999999999988 9999999997743
No 284
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=9.1e-22 Score=169.92 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=88.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++|+|+|++. |++|+|.++|.++... ..++.++||+|++.+|+. |++||+.++.. .. ..+++
T Consensus 506 TLlklL~gl~~----p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~----~~~~i 571 (694)
T TIGR03375 506 TLLKLLLGLYQ----PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YA----DDEEI 571 (694)
T ss_pred HHHHHHhcCCC----CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CC----CHHHH
Confidence 55666666666 5899999999998642 467889999999998875 99999976421 11 12344
Q ss_pred HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+ .......+||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili--LDE~Ts~LD~~te 637 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL--LDEPTSAMDNRSE 637 (694)
T ss_pred HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCCCCCCHHHH
Confidence 55555555532 2233346799999999999999999999988 9999999998643
No 285
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.85 E-value=1e-21 Score=166.30 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|+++|.++... .+++.++|+||++.+|+. |++||+.++.. ... .+++
T Consensus 381 TLlklL~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~ 446 (576)
T TIGR02204 381 TLFQLLLRFYD----PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEV 446 (576)
T ss_pred HHHHHHHhccC----CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHH
Confidence 66777777776 5899999999988642 456779999999998765 99999976421 111 1234
Q ss_pred HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++. .........||||||||++||||++.+|+++| +||||+++|+.+.
T Consensus 447 ~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili--lDEpts~lD~~~~ 512 (576)
T TIGR02204 447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL--LDEATSALDAESE 512 (576)
T ss_pred HHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE--EeCcccccCHHHH
Confidence 4455555443 22233446799999999999999999999888 9999999998754
No 286
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2.9e-21 Score=144.31 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=85.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.+++++|+|+.. |++|+|.++|.++... ..++.++|++|++.+++ .|+.+|+.+.. .... +.
T Consensus 48 STLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~ 112 (207)
T cd03369 48 STLILALFRFLE----AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EE 112 (207)
T ss_pred HHHHHHHhcccC----CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HH
Confidence 367888888877 4899999999987432 23567999999998776 49999985421 1111 12
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+.++ .++++.+||+||+||++||||++.+|+++| +||||+|+|+.+.
T Consensus 113 ~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~ 161 (207)
T cd03369 113 IYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLV--LDEATASIDYATD 161 (207)
T ss_pred HHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEE--EeCCcccCCHHHH
Confidence 333333 356789999999999999999999999988 9999999998743
No 287
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=4.2e-21 Score=153.52 Aligned_cols=127 Identities=23% Similarity=0.253 Sum_probs=100.8
Q ss_pred HHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 13 HLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 13 ~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
..|.+++. .+|+|.|+|+++... ..|+.+..|||++. +.|.+||.+.+..+...+.+ ..+..+..+
T Consensus 331 ~allrL~~-----s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~ 404 (534)
T COG4172 331 LALLRLIP-----SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQ 404 (534)
T ss_pred HHHHhhcC-----cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHH
Confidence 45556655 369999999998632 34677899999974 56899999998887766532 346667778
Q ss_pred HHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheeecccccc
Q psy16753 85 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVE 153 (156)
Q Consensus 85 ~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~~~~~~~ 153 (156)
++.++++.+|+++ ..+++++++|||||||++||||++.+|++++ |||||+ +++.++|.||-
T Consensus 405 rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~--LDEPTS------ALD~SVQaQvv 466 (534)
T COG4172 405 RVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELIL--LDEPTS------ALDRSVQAQVL 466 (534)
T ss_pred HHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEE--ecCCch------HhhHHHHHHHH
Confidence 8999999999975 4699999999999999999999999999998 999555 55555666553
No 288
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=4e-21 Score=163.13 Aligned_cols=113 Identities=21% Similarity=0.144 Sum_probs=92.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++ ..++|+||+...++..|+.+++.+.... .. ....+.+
T Consensus 379 STLlk~L~Gl~~----p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~ 436 (590)
T PRK13409 379 TTFAKLLAGVLK----PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSE 436 (590)
T ss_pred HHHHHHHhCCCC----CCceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHH
Confidence 367888888876 589999985 1489999998878889999998764211 11 1124678
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
+++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|+|+.++..
T Consensus 437 ~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL--LDEPt~~LD~~~~~~ 491 (590)
T PRK13409 437 IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL--LDEPSAHLDVEQRLA 491 (590)
T ss_pred HHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHHHH
Confidence 8999999988899999999999999999999999999998 999999999775443
No 289
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=1.2e-21 Score=165.63 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=91.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++.| ++|+|+++|.++... ..++.++|+||++.+|+. |++||+.++.. .. ...++
T Consensus 372 STLl~lL~gl~~~----~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~----~~~~~ 438 (571)
T TIGR02203 372 STLVNLIPRFYEP----DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQ----ADRAE 438 (571)
T ss_pred HHHHHHHHhccCC----CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CC----CCHHH
Confidence 3678888888875 899999999987542 456779999999998865 99999975421 01 12234
Q ss_pred HHHHHHHcCCCcc-------ccCc----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLLKC-------KNSV----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~~~-------~~~~----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++.+. .|.. -..||||||||++||||++.+|+++| |||||+++|+.+..
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill--LDEpts~LD~~~~~ 506 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI--LDEATSALDNESER 506 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHHH
Confidence 5566666665432 2333 34699999999999999999999998 99999999987544
No 290
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=1.2e-21 Score=169.21 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=87.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++|+|+|++. |++|+|+++|.++... ..++.++|++|++.+|+. |++||+.++.. ... .+.+
T Consensus 498 TL~~ll~g~~~----p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~----~~~i 563 (694)
T TIGR01846 498 TLTKLLQRLYT----PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAP----FEHV 563 (694)
T ss_pred HHHHHHhcCCC----CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCC----HHHH
Confidence 56677777766 5899999999998642 457789999999988864 99999975321 111 1223
Q ss_pred HHHHHHcC-----------CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELG-----------LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~-----------L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..+ ++........+||||||||++||||++.+|+++| |||||+|+|+.+.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili--lDEpts~LD~~~~ 629 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI--FDEATSALDYESE 629 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EECCCcCCCHHHH
Confidence 33344433 3333444557899999999999999999999988 9999999998743
No 291
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=2.2e-21 Score=177.53 Aligned_cols=133 Identities=26% Similarity=0.359 Sum_probs=102.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccC-------CcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRN-------LHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~ 81 (156)
.|++|+|+|++.+.. ..+|+|.++|.++.....++.++|++|++.+++.+||+|++.|+...+.... ....+
T Consensus 205 STLLk~LaG~l~~~~-~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~e 283 (1470)
T PLN03140 205 TTLLLALAGKLDPSL-KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARRE 283 (1470)
T ss_pred HHHHHHHhCCCCCCC-cceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHH
Confidence 378999999987511 1389999999988654346679999999999999999999998765432110 00100
Q ss_pred ------------------------HHHHHHHHHHHcCCCccc-----cCccCcCChHHHHHHHHHHHHhcCCCeeEEecC
Q psy16753 82 ------------------------RARTVDALLKELGLLKCK-----NSVLNVLSGGERKRVALAVQVSQDCSRVVKITD 132 (156)
Q Consensus 82 ------------------------~~~~~~~~l~~~~L~~~~-----~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~D 132 (156)
....++++++.+||+++. |+.++++||||||||+||++++.+|++++ +|
T Consensus 284 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vll--lD 361 (1470)
T PLN03140 284 KDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF--MD 361 (1470)
T ss_pred HhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEE--Ee
Confidence 012356789999998755 55678999999999999999999999988 99
Q ss_pred CCCCCCCchhhh
Q psy16753 133 SQPRGKWPISAL 144 (156)
Q Consensus 133 ep~~g~~~~~~~ 144 (156)
|||+|||+.++.
T Consensus 362 EPTsGLDs~t~~ 373 (1470)
T PLN03140 362 EISTGLDSSTTY 373 (1470)
T ss_pred CCCcCccHHHHH
Confidence 999999977543
No 292
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.85 E-value=1.5e-21 Score=150.48 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=90.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|+++|.++... ..++.++|++|++.+++ .|+.+|+....... ............
T Consensus 61 STLl~~l~Gl~~----~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~l~~~~ 134 (257)
T cd03288 61 SSLSLAFFRMVD----IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCT-DDRLWEALEIAQ 134 (257)
T ss_pred HHHHHHHHcccC----CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCC-HHHHHHHHHHhC
Confidence 367888888876 5899999999987532 33567899999988776 48888874221000 000000000112
Q ss_pred HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+.++.+ +++...+..+.+||+||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 135 l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEPt~gLD~~~~ 192 (257)
T cd03288 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILI--MDEATASIDMATE 192 (257)
T ss_pred cHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence 33455555 56666677788999999999999999999999888 9999999998754
No 293
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.4e-21 Score=141.99 Aligned_cols=97 Identities=27% Similarity=0.391 Sum_probs=79.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+... +|++|+|.++|.++. ...++.++|++|++.+++..|+.+|+.+....
T Consensus 47 STLl~~l~G~~~~--~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------- 106 (192)
T cd03232 47 TTLLDVLAGRKTA--GVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL----------------- 106 (192)
T ss_pred HHHHHHHhCCCcC--CCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH-----------------
Confidence 4788899987531 258999999999875 33356789999998888889999998753210
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+ +|||||+||++||+|++.+|+++| +||||+|+|+.+
T Consensus 107 --~-------------~LSgGe~qrv~la~al~~~p~vll--lDEP~~~LD~~~ 143 (192)
T cd03232 107 --R-------------GLSVEQRKRLTIGVELAAKPSILF--LDEPTSGLDSQA 143 (192)
T ss_pred --h-------------cCCHHHhHHHHHHHHHhcCCcEEE--EeCCCcCCCHHH
Confidence 0 899999999999999999999888 999999999763
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=2.2e-21 Score=161.60 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=93.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCC--CCCHHHHHHHHHHhh-cccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVD--TLTVHEHMTLMARLK-MDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~--~ltv~e~l~~~~~~~-~~~~~~~~~ 81 (156)
.|++++|+|+..+ +++|+|+++|.++... ..++.++|++|++.++. ..++.+++.+..... .........
T Consensus 300 STLl~~l~G~~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (490)
T PRK10938 300 STLLSLITGDHPQ---GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR 376 (490)
T ss_pred HHHHHHHcCCCCc---ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH
Confidence 3788888886532 2699999999875321 23456899999865533 346666554321100 000011122
Q ss_pred HHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..++++++++.+++.+ ..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 377 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll--LDEPt~gLD~~~~ 437 (490)
T PRK10938 377 QQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLI--LDEPLQGLDPLNR 437 (490)
T ss_pred HHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHHHH
Confidence 3456889999999987 7899999999999999999999999999988 9999999997643
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.85 E-value=3.6e-21 Score=140.29 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=74.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.+++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++. |+.+|+
T Consensus 42 StLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l-------------------- 96 (173)
T cd03246 42 STLARLILGLLR----PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI-------------------- 96 (173)
T ss_pred HHHHHHHHhccC----CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC--------------------
Confidence 368888888877 4899999999987532 335678999999877764 888775
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 97 --------------------LS~G~~qrv~la~al~~~p~~ll--lDEPt~~LD~~~~ 132 (173)
T cd03246 97 --------------------LSGGQRQRLGLARALYGNPRILV--LDEPNSHLDVEGE 132 (173)
T ss_pred --------------------cCHHHHHHHHHHHHHhcCCCEEE--EECCccccCHHHH
Confidence 99999999999999999999888 9999999998754
No 296
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.9e-21 Score=141.34 Aligned_cols=91 Identities=27% Similarity=0.315 Sum_probs=76.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+++..|+.+++.+.
T Consensus 40 STLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------- 100 (178)
T cd03229 40 STLLRCIAGLEE----PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------- 100 (178)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec---------------
Confidence 367888888876 4899999999987532 3356799999998888888998876421
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
||+|||||++||+|++.+|+++| +||||+|+|+.+
T Consensus 101 ----------------------lS~G~~qr~~la~al~~~p~lli--lDEP~~~LD~~~ 135 (178)
T cd03229 101 ----------------------LSGGQQQRVALARALAMDPDVLL--LDEPTSALDPIT 135 (178)
T ss_pred ----------------------CCHHHHHHHHHHHHHHCCCCEEE--EeCCcccCCHHH
Confidence 99999999999999999999998 999999999774
No 297
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.2e-21 Score=139.69 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=102.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc--ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL--MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~--~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|+..| ++|+|+|+|..+.... ..+.+-|+--.+.+-+.+|+.||+.|...++.. .....+
T Consensus 42 TtLLRilaGLl~p----~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i 111 (209)
T COG4133 42 TTLLRILAGLLRP----DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATI 111 (209)
T ss_pred HHHHHHHHcccCC----CCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhH
Confidence 4789999999995 7999999999886542 345566776666677889999999998776532 123457
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++.+||....|.++++||.|||+||+|||-++..++++| ||||++++|+-.
T Consensus 112 ~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWi--LDEP~taLDk~g 165 (209)
T COG4133 112 WEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWI--LDEPFTALDKEG 165 (209)
T ss_pred HHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCcee--ecCcccccCHHH
Confidence 788999999999999999999999999999999999999998 999999999763
No 298
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=3.8e-21 Score=143.38 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=82.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|+.. |++|+|.++| .++|++|++.++ ..|+.+|+.+.... .. +...+
T Consensus 45 STLl~~i~G~~~----~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~----~~~~~ 99 (204)
T cd03250 45 SSLLSALLGELE----KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIRENILFGKPF------DE----ERYEK 99 (204)
T ss_pred HHHHHHHhCcCC----CCCCeEEEcC----------EEEEEecCchhc-cCcHHHHhccCCCc------CH----HHHHH
Confidence 367888888877 4899999999 489999999877 46999999764211 11 11222
Q ss_pred HHHHc-----------CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKEL-----------GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~-----------~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++.+ ++....++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.++.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~lll--lDEP~~~LD~~~~~ 164 (204)
T cd03250 100 VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYL--LDDPLSAVDAHVGR 164 (204)
T ss_pred HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCccccCCHHHHH
Confidence 22232 23334566788999999999999999999999998 99999999998654
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.84 E-value=2.6e-21 Score=164.37 Aligned_cols=123 Identities=22% Similarity=0.231 Sum_probs=88.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART- 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~- 85 (156)
|++++|+|++. |++|+|.++|.++.. ...++.++|++|++.+++ .|++||+.++.. .....+..+.
T Consensus 376 TL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~a~ 445 (585)
T TIGR01192 376 TLINLLQRVYD----PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGRE-----GATDEEVYEAA 445 (585)
T ss_pred HHHHHHccCCC----CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCC-----CCCHHHHHHHH
Confidence 56677777766 589999999998754 245678999999998876 599999976421 1111111111
Q ss_pred ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.+.+..+ |++...+.....||||||||++|||||+.+|+++| +||||+|+|+.+..
T Consensus 446 ~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili--lDEpts~LD~~~~~ 508 (585)
T TIGR01192 446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV--LDEATSALDVETEA 508 (585)
T ss_pred HHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCccCCCHHHHH
Confidence 11222222 34444556677899999999999999999999988 99999999987543
No 300
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=5.4e-21 Score=152.88 Aligned_cols=118 Identities=24% Similarity=0.364 Sum_probs=93.9
Q ss_pred cceEEEECCEecCcc-------cccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCC
Q psy16753 26 VDGQILLNGLEVEKN-------LMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL 96 (156)
Q Consensus 26 ~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 96 (156)
-+|.|.|+|.++-.. .....|+++||++.. -|-.|+...+....++| .+......+.++.++++.+|+.
T Consensus 68 ~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~ 145 (534)
T COG4172 68 PSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIP 145 (534)
T ss_pred ccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCC
Confidence 579999999997432 123568999999864 45667888777666555 3556777888999999999996
Q ss_pred c---cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheeecccccc
Q psy16753 97 K---CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVE 153 (156)
Q Consensus 97 ~---~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~~~~~~~ 153 (156)
+ ..+.++++|||||||||+||+||+.+|+++| .|| |+++++||+|.||.
T Consensus 146 ~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI--ADE------PTTALDVtvQaQIL 197 (534)
T COG4172 146 EPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI--ADE------PTTALDVTVQAQIL 197 (534)
T ss_pred chhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe--ecC------CcchhhhhhHHHHH
Confidence 3 4689999999999999999999999999887 999 55566677777765
No 301
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=2.4e-21 Score=164.12 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++.. ..+++.++|++|++.+|+. |++||+.++.. ... .+.+
T Consensus 356 TLl~ll~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~~ 421 (569)
T PRK10789 356 TLLSLIQRHFD----VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DAT----QQEI 421 (569)
T ss_pred HHHHHHhcccC----CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCC----HHHH
Confidence 56677777766 589999999998754 2456789999999998875 99999976421 111 1233
Q ss_pred HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++ +...+....+||||||||++||||++.+|+++| +||||+|+|+.+.
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill--lDEpts~LD~~~~ 487 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI--LDDALSAVDGRTE 487 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EECccccCCHHHH
Confidence 344444443 223344456899999999999999999999998 9999999998753
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=1.8e-20 Score=155.85 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=89.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|.+.. +++ ...+++.+|+.+++.+..... ........+++.+
T Consensus 64 STLLkiLaGLl~----P~sGeI~I~G~~~~-------i~~---~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~e 126 (549)
T PRK13545 64 STLSNLIAGVTM----PNKGTVDIKGSAAL-------IAI---SSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPE 126 (549)
T ss_pred HHHHHHHhCCCC----CCceEEEECCEeee-------EEe---ccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHH
Confidence 378888888877 48999999997521 122 233456789999987644322 1223344456778
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.+
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLL--LDEPTsgLD~~s 178 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILV--IDEALSVGDQTF 178 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHH
Confidence 9999999988899999999999999999999999999988 999999999874
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=158.45 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|+.. |++|+|.++|. ..+||++|++. +++..|+.+++.+.. . .. ...+++
T Consensus 359 STLl~~i~G~~~----p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~--~--~~----~~~~~~ 418 (530)
T PRK15064 359 TTLLRTLVGELE----PDSGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR--Q--EG----DDEQAV 418 (530)
T ss_pred HHHHHHHhCCCC----CCCeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc--c--CC----ccHHHH
Confidence 367888888876 58999999873 35899999864 456789999875321 0 00 123467
Q ss_pred HHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++. +..++++.+||||||||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll--LDEPt~~LD~~~~ 474 (530)
T PRK15064 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV--MDEPTNHMDMESI 474 (530)
T ss_pred HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence 8899999994 67899999999999999999999999999988 9999999998865
No 304
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=2.3e-21 Score=177.58 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=81.5
Q ss_pred cceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCC-------
Q psy16753 26 VDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGL------- 95 (156)
Q Consensus 26 ~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L------- 95 (156)
++|+|+++|.++.. ..+|+.+|||+|++.+|+ .|++||+.++.. ... .+.+.++++..++
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~at----~eeI~~A~k~A~l~~fI~~L 1344 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----DAT----REDVKRACKFAAIDEFIESL 1344 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhC
Confidence 69999999999864 356788999999999986 599999987632 111 1234455555444
Q ss_pred CccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 96 LKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 96 ~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++..|+.+ ..||||||||++|||||+.+|++|| |||||++||+.+..
T Consensus 1345 P~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILL--LDEaTSaLD~~sE~ 1395 (1466)
T PTZ00265 1345 PNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILL--LDEATSSLDSNSEK 1395 (1466)
T ss_pred ccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHH
Confidence 22334444 5699999999999999999999988 99999999977543
No 305
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=1.9e-20 Score=158.34 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHH-hh-----cc-----cCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LK-----MD-----RNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~-----~~-----~~~ 77 (156)
.|++++|+|++. |++|+|.+++. ..+||++|++.+++.+|+.+++.+... .. .. ...
T Consensus 47 STLlk~i~G~~~----p~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (556)
T PRK11819 47 STLLRIMAGVDK----EFEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAE 114 (556)
T ss_pred HHHHHHHhCCCC----CCCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 367888888876 48999998642 358999999988889999999976421 10 00 000
Q ss_pred cH----------------------HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753 78 HH----------------------VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 78 ~~----------------------~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~ 135 (156)
.. ....+++.++++.+++.. .++++.+|||||||||+||+|++.+|+++| |||||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlL--LDEPt 191 (556)
T PRK11819 115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLL--LDEPT 191 (556)
T ss_pred CchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEE--EcCCC
Confidence 00 011346778899999964 789999999999999999999999999888 99999
Q ss_pred CCCCchhhh
Q psy16753 136 RGKWPISAL 144 (156)
Q Consensus 136 ~g~~~~~~~ 144 (156)
+|+|+.+..
T Consensus 192 ~~LD~~~~~ 200 (556)
T PRK11819 192 NHLDAESVA 200 (556)
T ss_pred CcCChHHHH
Confidence 999987543
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-20 Score=157.40 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=93.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHH-hhc---------c-cC-
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR-LKM---------D-RN- 76 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~~---------~-~~- 76 (156)
.|++++|+|++. |++|+|.++|. ..+||++|++.+++.+|+.+++.+... .+. . ..
T Consensus 41 STLl~~l~Gl~~----p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (530)
T PRK15064 41 STFMKILGGDLE----PSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEM 108 (530)
T ss_pred HHHHHHHhCCCC----CCCceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhccccc
Confidence 367888888776 48999999873 248999999888889999999875421 000 0 00
Q ss_pred -----------------CcHHHHHHHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCC
Q psy16753 77 -----------------LHHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGK 138 (156)
Q Consensus 77 -----------------~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~ 138 (156)
.......+++.++++.+++.+.. ++++.+||||||||++||+||+.+|+++| |||||+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLl--LDEPt~~L 186 (530)
T PRK15064 109 SEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILL--LDEPTNNL 186 (530)
T ss_pred ccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCccc
Confidence 00011235678899999997643 57889999999999999999999999888 99999999
Q ss_pred Cchhhh
Q psy16753 139 WPISAL 144 (156)
Q Consensus 139 ~~~~~~ 144 (156)
|+.+..
T Consensus 187 D~~~~~ 192 (530)
T PRK15064 187 DINTIR 192 (530)
T ss_pred CHHHHH
Confidence 987553
No 307
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.84 E-value=5.6e-21 Score=139.80 Aligned_cols=91 Identities=29% Similarity=0.390 Sum_probs=75.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|+..| ++|+|.++|.++.. ...++.++|++|++.+++ .|+.+|+
T Consensus 42 StLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i--------------------- 95 (178)
T cd03247 42 STLLQLLTGDLKP----QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL--------------------- 95 (178)
T ss_pred HHHHHHHhccCCC----CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh---------------------
Confidence 3688888898774 89999999998643 233566899999887664 5777765
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+||+||+||++||||++.+|+++| +||||+|+|+.+.
T Consensus 96 ----------------~~~LS~G~~qrv~laral~~~p~~ll--lDEP~~~LD~~~~ 134 (178)
T cd03247 96 ----------------GRRFSGGERQRLALARILLQDAPIVL--LDEPTVGLDPITE 134 (178)
T ss_pred ----------------cccCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence 67899999999999999999999988 9999999998754
No 308
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=8.6e-21 Score=140.89 Aligned_cols=131 Identities=24% Similarity=0.345 Sum_probs=99.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCccc---ccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHH---H
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL---MVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHV---E 81 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~---~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~---~ 81 (156)
|++++|+|.+. |++|+|.++|.++++.. .+..++-|||++. .++.+|+.||+..+..-...+++... .
T Consensus 47 Tlln~iaG~l~----~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~ 122 (263)
T COG1101 47 TLLNAIAGDLK----PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNER 122 (263)
T ss_pred HHHHHhhCccc----cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHH
Confidence 56666666666 59999999999998753 3345678999974 58999999999876543211222221 2
Q ss_pred HHHHHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 82 RARTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 82 ~~~~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
..+...+-++.+ |+++.+++++.-|||||||-+++++|.++.|++++ |||=|+.+||-++.+|
T Consensus 123 ~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLL--LDEHTAALDPkta~~v 187 (263)
T COG1101 123 RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILL--LDEHTAALDPKTAEFV 187 (263)
T ss_pred HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEE--ecchhhcCCcchHHHH
Confidence 223345556665 44788899999999999999999999999999998 9999999999866554
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=2.7e-20 Score=157.23 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=91.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh-hc-----------ccC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KM-----------DRN 76 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~~-----------~~~ 76 (156)
.|++++|+|++. |++|+|.+++ ...+||++|++.+++.+|+.+++.+.... .. ...
T Consensus 45 STLl~~i~G~~~----p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
T TIGR03719 45 STLLRIMAGVDK----EFNGEARPAP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE 112 (552)
T ss_pred HHHHHHHhCCCC----CCCceEEecC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 367888888876 4899999875 23589999999888899999999764211 00 000
Q ss_pred CcHH---------------------HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753 77 LHHV---------------------ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 77 ~~~~---------------------~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~ 135 (156)
.... ....++.++++.+++.. .++++.+||||||||++||+||+.+|+++| |||||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLL--LDEPt 189 (552)
T TIGR03719 113 PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLL--LDEPT 189 (552)
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCC
Confidence 0000 01235667888888854 688999999999999999999999999888 99999
Q ss_pred CCCCchhhh
Q psy16753 136 RGKWPISAL 144 (156)
Q Consensus 136 ~g~~~~~~~ 144 (156)
+|+|+.++.
T Consensus 190 ~~LD~~~~~ 198 (552)
T TIGR03719 190 NHLDAESVA 198 (552)
T ss_pred CCCChHHHH
Confidence 999988654
No 310
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=3.6e-21 Score=141.12 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=74.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|+++|.++... .++..++|+||
T Consensus 39 StLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------------------------------- 80 (180)
T cd03214 39 STLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQ---------------------------------- 80 (180)
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHH----------------------------------
Confidence 367888888876 5899999999987532 12334566665
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..++.+.+||+||+||++||||++.+|+++| +||||+|+|+.+.
T Consensus 81 ---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll--lDEP~~~LD~~~~ 133 (180)
T cd03214 81 ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILL--LDEPTSHLDIAHQ 133 (180)
T ss_pred ---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHH
Confidence 5677788777778899999999999999999999999998 9999999997653
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=1.9e-20 Score=158.34 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=90.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|++++ +. .+||+||+. .+++.+|+.+++.+..... ..... ....+
T Consensus 364 STLl~~i~G~~~----p~~G~i~~~~-~~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~ 426 (556)
T PRK11819 364 STLFKMITGQEQ----PDSGTIKIGE-TV-------KLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR--EIPSR 426 (556)
T ss_pred HHHHHHHhCCCC----CCCeEEEECC-ce-------EEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc--HHHHH
Confidence 367888888876 5899999854 21 489999986 6778899999997653221 11111 12345
Q ss_pred HHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.. ..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll--LDEPt~~LD~~~~ 481 (556)
T PRK11819 427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL--LDEPTNDLDVETL 481 (556)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence 7899999964 5689999999999999999999999999998 9999999997754
No 312
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6e-21 Score=158.10 Aligned_cols=117 Identities=24% Similarity=0.300 Sum_probs=92.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|+.. |++|+|.+||.+..+ ..|++++++++|++.+|++ |++||+.++... ...+.+
T Consensus 362 TLl~lL~G~~~----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~---------~s~e~i 427 (559)
T COG4988 362 TLLNLLLGFLA----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD---------ASDEEI 427 (559)
T ss_pred HHHHHHhCcCC----CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc---------CCHHHH
Confidence 56666666666 589999999998754 3688999999999998876 999999865321 223456
Q ss_pred HHHHHHcCCCccc------cCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKCK------NSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~------~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++..++.+.. |..+ ..|||||+|||++|||+..+++++| +||||+++|.-+
T Consensus 428 ~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l--lDEpTA~LD~et 491 (559)
T COG4988 428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL--LDEPTAHLDAET 491 (559)
T ss_pred HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE--ecCCccCCCHhH
Confidence 6777777775433 3334 4599999999999999999999998 999999999653
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=2.1e-20 Score=157.84 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=91.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|++++ ++ .+||++|++ .+++.+|+.+++.+..... ..... .....
T Consensus 362 STLl~~l~G~~~----p~~G~i~~~~-~~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~ 424 (552)
T TIGR03719 362 STLFRMITGQEQ----PDSGTIKIGE-TV-------KLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSR 424 (552)
T ss_pred HHHHHHHcCCCC----CCCeEEEECC-ce-------EEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHH
Confidence 367888888876 5899999854 21 489999986 4778899999997653221 11111 12355
Q ss_pred HHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++.+++.. ..++++.+||||||||++||+|++.+|+++| |||||+|+|+.++.
T Consensus 425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll--LDEPt~~LD~~~~~ 480 (552)
T TIGR03719 425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL--LDEPTNDLDVETLR 480 (552)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE--EeCCCCCCCHHHHH
Confidence 7899999964 5689999999999999999999999999998 99999999987553
No 314
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.4e-20 Score=136.96 Aligned_cols=88 Identities=26% Similarity=0.397 Sum_probs=73.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.+++++|+|+..| ++|+|+++|.++... ..++.++|++|++.+++ .|+.||+
T Consensus 42 stLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-------------------- 96 (171)
T cd03228 42 STLLKLLLRLYDP----TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-------------------- 96 (171)
T ss_pred HHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh--------------------
Confidence 3688888888774 899999999987532 23466899999986665 4777665
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+|||||++||+|++.+|+++| |||||+|+|+.++
T Consensus 97 --------------------LS~G~~~rl~la~al~~~p~lll--lDEP~~gLD~~~~ 132 (171)
T cd03228 97 --------------------LSGGQRQRIAIARALLRDPPILI--LDEATSALDPETE 132 (171)
T ss_pred --------------------hCHHHHHHHHHHHHHhcCCCEEE--EECCCcCCCHHHH
Confidence 99999999999999999999888 9999999997754
No 315
>KOG0055|consensus
Probab=99.83 E-value=6.5e-21 Score=168.46 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=96.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH--
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR-- 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-- 84 (156)
||++++.+++.--|.|++|+|.+||.++.+. ..|+++|.|.|+|.+|.. |++||+.++. .. .+..+..+
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~----vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE----VSEEEIIEAA 1100 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC----CCHHHHHHHH
Confidence 7888888888888889999999999999754 458889999999999865 9999999872 11 11111111
Q ss_pred ---HHHHHHHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 85 ---TVDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 85 ---~~~~~l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
.+.+.+. +|++-.|+++ .+||||||||++||||++.+|++|| |||-|++||.-|-+.|
T Consensus 1101 k~ANaH~FI~--sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL--LDEATSALDseSErvV 1165 (1228)
T KOG0055|consen 1101 KLANAHNFIS--SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL--LDEATSALDSESERVV 1165 (1228)
T ss_pred HHhhhHHHHh--cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee--eeccchhhhhhhHHHH
Confidence 1112222 4455556665 5899999999999999999999998 9999999997655443
No 316
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=3.4e-20 Score=134.43 Aligned_cols=88 Identities=24% Similarity=0.097 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|. +.++|++|++.++ ..|+.+|+.+.
T Consensus 41 STLl~~l~G~~~----~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~-------------------- 87 (166)
T cd03223 41 SSLFRALAGLWP----WGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP-------------------- 87 (166)
T ss_pred HHHHHHHhcCCC----CCCceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc--------------------
Confidence 367888888876 48999999873 4689999998754 56999987531
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+||+|||||++||||++.+|+++| +||||+|+|+.++.
T Consensus 88 -------------~~~~LS~G~~~rv~laral~~~p~~ll--lDEPt~~LD~~~~~ 128 (166)
T cd03223 88 -------------WDDVLSGGEQQRLAFARLLLHKPKFVF--LDEATSALDEESED 128 (166)
T ss_pred -------------CCCCCCHHHHHHHHHHHHHHcCCCEEE--EECCccccCHHHHH
Confidence 357899999999999999999999998 99999999987544
No 317
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=5.1e-21 Score=140.32 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=103.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECC-EecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc--c---CCcH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNG-LEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD--R---NLHH 79 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G-~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~--~---~~~~ 79 (156)
|++.+|+|...| +.|+|+|+| .++++. ..+..||.-||-+..|+++||+||+..+...... . ....
T Consensus 46 T~mD~ItGKtrp----~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~ 121 (249)
T COG4674 46 TLMDVITGKTRP----QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR 121 (249)
T ss_pred eeeeeecccCCC----CcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC
Confidence 567888888885 899999999 788654 2345578899999999999999999876432210 0 0112
Q ss_pred HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...++++++++...+|.+..+.....||+|||||+.|++-++++|++++ +|||++||....+
T Consensus 122 ~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLL--lDEPvAGMTd~Et 183 (249)
T COG4674 122 AEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL--LDEPVAGMTDAET 183 (249)
T ss_pred hhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEE--ecCccCCCcHHHH
Confidence 2345689999999999999999999999999999999999999999888 9999999975433
No 318
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.8e-20 Score=137.87 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|.|+|... |++|+|.++|.++... ...+..+.+||+..+-+..||.|-+.++...+. .+..+..+.+.
T Consensus 41 STlLk~LsGel~----p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i 115 (259)
T COG4559 41 STLLKALSGELS----PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERI 115 (259)
T ss_pred HHHHHHhhCccC----CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHH
Confidence 356777777766 5899999999998654 346778999999887667899999887754332 12233456677
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCee----EEecCCCCCCCCch
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV----VKITDSQPRGKWPI 141 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il----l~~~Dep~~g~~~~ 141 (156)
++.++...++.....+...+|||||||||.+||.|++-.... .|.|||||+++|.-
T Consensus 116 ~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~ 175 (259)
T COG4559 116 AAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA 175 (259)
T ss_pred HHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchH
Confidence 889999999999999999999999999999999999766655 44599999999865
No 319
>KOG0057|consensus
Probab=99.82 E-value=1.9e-20 Score=154.06 Aligned_cols=118 Identities=22% Similarity=0.264 Sum_probs=91.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|.+|+|.+... .+|+|++||+++.. ...|+.+|||||+..+|++ |+..|+.++... ...+++
T Consensus 393 Tilr~LlrF~d-----~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s---------as~eeV 457 (591)
T KOG0057|consen 393 TILRLLLRFFD-----YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPS---------ASDEEV 457 (591)
T ss_pred HHHHHHHHHhc-----cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCC---------cCHHHH
Confidence 56777777777 49999999999854 3568889999999998865 999999865321 123456
Q ss_pred HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++.++.++.+. ...+-..|||||||||++|||++.+|++++ +||||+.+|..+-.
T Consensus 458 ~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~--~DEaTS~LD~~TE~ 524 (591)
T KOG0057|consen 458 VEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL--LDEATSALDSETER 524 (591)
T ss_pred HHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE--ecCcccccchhhHH
Confidence 666777776432 233446799999999999999999999998 99999999976543
No 320
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=5.1e-20 Score=142.01 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=92.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEE-----------ECCEecCcc--c-cc--ceeeEecCCCCCCCCCCHHHHHHHHHHhh
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQIL-----------LNGLEVEKN--L-MV--KVSGFVPQHDLTVDTLTVHEHMTLMARLK 72 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~-----------~~G~~i~~~--~-~~--~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~ 72 (156)
.|++++|+|++. |++|+|+ ++|.++... . .+ ..+++++|+...++. ++.+++.+...
T Consensus 40 STLlk~l~Gl~~----p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~-- 112 (255)
T cd03236 40 STALKILAGKLK----PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK-- 112 (255)
T ss_pred HHHHHHHhCCcC----CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--
Confidence 367888888877 4899996 788876432 1 11 236888998777764 67777654321
Q ss_pred cccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 73 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+.+.++++.+++.+..++.+.+||+|||||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 113 ------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPts~LD~~~~ 175 (255)
T cd03236 113 ------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYF--FDEPSSYLDIKQR 175 (255)
T ss_pred ------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCCCCCCHHHH
Confidence 11234567899999999988899999999999999999999999999888 9999999998743
No 321
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=2.3e-20 Score=142.91 Aligned_cols=99 Identities=27% Similarity=0.403 Sum_probs=77.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
||++++...+..+.+|++|+|+|+|.+++... .....+++.++
T Consensus 50 ~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------------------------------------~~~~~~~v~el 92 (268)
T COG4608 50 CGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------------------------------------KEERRERVLEL 92 (268)
T ss_pred CCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------------------------------hhHHHHHHHHH
Confidence 56666666666666679999999999976432 11234678899
Q ss_pred HHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhheeecccccc
Q psy16753 90 LKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFITTASSVE 153 (156)
Q Consensus 90 l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~~~~~~~~ 153 (156)
++.+|+.+ ..++++++|||||+||+.|||||+.+|++++ +||| +|++++++|.||.
T Consensus 93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV--~DEp------vSaLDvSiqaqIl 149 (268)
T COG4608 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIV--ADEP------VSALDVSVQAQIL 149 (268)
T ss_pred HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEE--ecCc------hhhcchhHHHHHH
Confidence 99999975 6799999999999999999999999999988 9995 5555555555554
No 322
>PLN03232 ABC transporter C family member; Provisional
Probab=99.81 E-value=1.7e-20 Score=172.56 Aligned_cols=117 Identities=17% Similarity=0.129 Sum_probs=88.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|.|++. |++|+|.+||.++... .+|++++++||++.+|++ |+++|+..+. .. ..+++
T Consensus 1277 TL~~lL~rl~~----p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~----sdeei 1341 (1495)
T PLN03232 1277 SMLNALFRIVE----LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EH----NDADL 1341 (1495)
T ss_pred HHHHHHhCCCc----CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CC----CHHHH
Confidence 45555555555 6899999999998643 467889999999999876 9999996431 11 12345
Q ss_pred HHHHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+ .......+||||||||++|||||+++|+++| |||||+++|+.+.
T Consensus 1342 ~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI--LDEATSaLD~~Te 1407 (1495)
T PLN03232 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV--LDEATASVDVRTD 1407 (1495)
T ss_pred HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHHH
Confidence 55566665532 2223345799999999999999999999888 9999999997643
No 323
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=6.2e-20 Score=136.67 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=75.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---c-ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---L-MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~-~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.+++++|+|+.. +.|++|+|.++|.++... . .+..++|+||++.+++..++.+++
T Consensus 40 StLl~~l~G~~~--~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------- 98 (200)
T cd03217 40 STLAKTIMGHPK--YEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL------------------- 98 (200)
T ss_pred HHHHHHHhCCCc--CCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH-------------------
Confidence 367888888852 126899999999988642 1 234589999998877777665543
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++...+||+||+||++||+|++.+|+++| +||||+|+|+.++
T Consensus 99 ---------------~~~~~~LS~G~~qrv~laral~~~p~ill--lDEPt~~LD~~~~ 140 (200)
T cd03217 99 ---------------RYVNEGFSGGEKKRNEILQLLLLEPDLAI--LDEPDSGLDIDAL 140 (200)
T ss_pred ---------------hhccccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 11235799999999999999999999888 9999999997754
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=5.3e-20 Score=155.23 Aligned_cols=115 Identities=20% Similarity=0.139 Sum_probs=87.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|+++|.++... .+++.++|++|++.+|+. |+.+| . . ....+.+
T Consensus 364 TL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~ 425 (547)
T PRK10522 364 TLAMLLTGLYQ----PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALV 425 (547)
T ss_pred HHHHHHhCCCC----CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------C----chHHHHH
Confidence 56666666665 5899999999998642 456789999999987764 55554 0 0 1223456
Q ss_pred HHHHHHcCCCccccCc-----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKNSV-----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~-----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.++.+++....+.. ..+||||||||++||||++.+|+++| +||||+|+|+.+..
T Consensus 426 ~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ili--lDE~ts~LD~~~~~ 486 (547)
T PRK10522 426 EKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILL--LDEWAADQDPHFRR 486 (547)
T ss_pred HHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHHH
Confidence 7888888886543221 35899999999999999999999988 99999999987543
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=99.81 E-value=3.6e-20 Score=171.12 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=87.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|.|++. |++|+|.+||.++... ..|++++++||++.+|.+ |+++|+..+.. . ..+.+
T Consensus 1280 TLl~lL~rl~~----p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~----tdeei 1344 (1622)
T PLN03130 1280 SMLNALFRIVE----LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------H----NDADL 1344 (1622)
T ss_pred HHHHHHhCcCC----CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------C----CHHHH
Confidence 45555555555 6899999999998653 467889999999999876 99999964321 1 12345
Q ss_pred HHHHHHcCCCc-------cccCc----cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLK-------CKNSV----LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~-------~~~~~----~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+ .+|.. ..+||||||||++|||||+.+|+++| |||||+++|+.+.
T Consensus 1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILI--LDEATSaLD~~Te 1410 (1622)
T PLN03130 1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILV--LDEATAAVDVRTD 1410 (1622)
T ss_pred HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEE--EECCCCCCCHHHH
Confidence 55566655532 22333 35799999999999999999999888 9999999997643
No 326
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.81 E-value=4.6e-20 Score=158.59 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++++|+|++. |++|+|.+++ ++.++|+||++.+++. |++||+.+........ ......+++.++
T Consensus 493 TLl~lL~Gl~~----~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~ 557 (659)
T TIGR00954 493 SLFRILGELWP----VYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQI 557 (659)
T ss_pred HHHHHHhCCCC----CCCCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHH
Confidence 67777888765 5899998753 4568999999988877 9999997643211000 000123456788
Q ss_pred HHHcCCCccccCc---------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 90 LKELGLLKCKNSV---------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 90 l~~~~L~~~~~~~---------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.+++.+..+++ ..+||||||||++||||++++|+++| |||||+|+|+.+.
T Consensus 558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill--LDEpts~LD~~~~ 618 (659)
T TIGR00954 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI--LDECTSAVSVDVE 618 (659)
T ss_pred HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence 9999997655543 36899999999999999999999888 9999999998743
No 327
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.81 E-value=6.1e-20 Score=155.17 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=89.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|++|++.+|.. |+.+|.. +....+++
T Consensus 383 Tl~~ll~g~~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~ 445 (555)
T TIGR01194 383 TLAKLFCGLYI----PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNA 445 (555)
T ss_pred HHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHH
Confidence 55666666665 6899999999998642 456779999999988765 6666631 11233457
Q ss_pred HHHHHHcCCCccccCc------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 87 DALLKELGLLKCKNSV------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
.++++.+++.+..+.. ..+||||||||++||||++.+|+++| +||||+++|+.+...+
T Consensus 446 ~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili--lDE~ts~LD~~~~~~i 509 (555)
T TIGR01194 446 QQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL--FDEWAADQDPAFKRFF 509 (555)
T ss_pred HHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHHHHH
Confidence 7889999887544332 36799999999999999999999998 9999999998765443
No 328
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=1.3e-19 Score=141.61 Aligned_cols=109 Identities=21% Similarity=0.182 Sum_probs=80.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+++++|+|++. |++|+|.++| .++|++|++.+++. |+.+|+.+.... .. ..+.+
T Consensus 77 STLl~~I~Gl~~----p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~ 131 (282)
T cd03291 77 TSLLMLILGELE----PSEGKIKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKS 131 (282)
T ss_pred HHHHHHHhCCCC----CCCcEEEECC----------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHH
Confidence 367888888876 5899999988 28999999887775 999998753211 00 01122
Q ss_pred HHHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++.+++.+ ..++.+.+||+|||||++||+||+.+|+++| +||||+|+|+.+..
T Consensus 132 ~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLi--LDEPt~gLD~~~~~ 196 (282)
T cd03291 132 VVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVFTEK 196 (282)
T ss_pred HHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHHH
Confidence 233333321 2234567999999999999999999999888 99999999988654
No 329
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.4e-20 Score=139.91 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=95.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc----ccccceeeEecCC--CCCCCCCCHHHHHHHHH--HhhcccCCcHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK----NLMVKVSGFVPQH--DLTVDTLTVHEHMTLMA--RLKMDRNLHHVE 81 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----~~~~~~ig~v~Q~--~~~~~~ltv~e~l~~~~--~~~~~~~~~~~~ 81 (156)
|++++++|... |++|.+.+.|+..-+ ...|+.||+|.-+ ..+..+.+++|-+.-+. ....+.......
T Consensus 72 TLL~ll~~~~~----pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~ 147 (257)
T COG1119 72 TLLSLLTGEHP----PSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE 147 (257)
T ss_pred HHHHHHhcccC----CCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHH
Confidence 56777777766 589999999997632 3557889998654 23345667777654321 111111112345
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
...++..+++.+++.+..+++..+||-|||||+.|||||+.+|+++| ||||++|+|..
T Consensus 148 ~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLi--LDEP~~GLDl~ 205 (257)
T COG1119 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLI--LDEPAQGLDLI 205 (257)
T ss_pred HHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEE--ecCccccCChH
Confidence 56788899999999999999999999999999999999999999887 99999999955
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=1.5e-19 Score=154.98 Aligned_cols=116 Identities=20% Similarity=0.192 Sum_probs=90.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|++ |.++ .+||++|+. .+++..|+.+++.+..... ... .....+.
T Consensus 359 STLlk~l~G~~~----p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~ 421 (635)
T PRK11147 359 TTLLKLMLGQLQ----ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVL 421 (635)
T ss_pred HHHHHHHhCCCC----CCCcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHH
Confidence 367788888766 58999998 5432 489999985 5778899999987643110 011 1134577
Q ss_pred HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++. +..++++.+|||||||||+||+|++.+|+++| |||||+|+|+.+.
T Consensus 422 ~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl--LDEPt~~LD~~~~ 476 (635)
T PRK11147 422 GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI--LDEPTNDLDVETL 476 (635)
T ss_pred HHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence 889999996 46789999999999999999999999999988 9999999998754
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.80 E-value=1.7e-19 Score=135.57 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=84.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEE-ECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQIL-LNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~-~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|. ++|..+. +.+.+.+++.+|+.+|+.+....+ ...... ...
T Consensus 27 STLlk~i~Gl~~----~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl~~~~~~~---~~~~~~---~~~ 86 (213)
T PRK15177 27 TTLTRLLCGLDA----PDEGDFIGLRGDALP----------LGANSFILPGLTGEENARMMASLY---GLDGDE---FSH 86 (213)
T ss_pred HHHHHHHhCCcc----CCCCCEEEecCceec----------cccccccCCcCcHHHHHHHHHHHc---CCCHHH---HHH
Confidence 367888888876 4899997 7775431 123455778899999998765432 112211 223
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++++...++++.+||+|||||++||+|++.+|+++| +|||++++|+.++
T Consensus 87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~lll--lDEP~~~lD~~~~ 140 (213)
T PRK15177 87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYI--ADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEE--ECCCCccCCHHHH
Confidence 34566788877889999999999999999999999999888 9999999998654
No 332
>KOG0065|consensus
Probab=99.80 E-value=3.1e-20 Score=164.61 Aligned_cols=133 Identities=24% Similarity=0.423 Sum_probs=115.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|||++|+|..... ..+|+|.++|.+......++.+|||-|++.+.+.+||+|.+.|.+.+|.+...+..+..+.+++
T Consensus 831 TTLLdvLA~R~t~G--~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~ 908 (1391)
T KOG0065|consen 831 TTLLDVLAGRKTGG--YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEE 908 (1391)
T ss_pred HHHHHHHhcCcccc--eEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 37999999997665 3799999999998766678889999999999999999999999998887766666666688999
Q ss_pred HHHHcCCCccccCccCc----CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNV----LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~----LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.++|+++.|..++. ||..||||+.||.-|+.+|+.|| .|||||+|||+.++-
T Consensus 909 Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il-FLDEPTSGLDsqaA~ 967 (1391)
T KOG0065|consen 909 VIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL-FLDEPTSGLDSQAAA 967 (1391)
T ss_pred HHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE-EecCCCCCccHHHHH
Confidence 99999999888877766 99999999999999999996554 589999999988653
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.80 E-value=6.8e-20 Score=168.06 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=91.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEE-CCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-------cCC-
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILL-NGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-------RNL- 77 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~-~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-------~~~- 77 (156)
|++++|+|++. |++|+|++ +|.++.. ..+++.+|||+|++.+|+. |+.||+.++...... ...
T Consensus 426 TLl~lL~gl~~----p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~ 500 (1466)
T PTZ00265 426 TILKLIERLYD----PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNED 500 (1466)
T ss_pred HHHHHHHHhcc----CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccc
Confidence 56666666666 58999999 5677643 2357789999999998875 999999875210000 000
Q ss_pred ----------------------------------------cHHHHHHHHHHHHHHcCCCcc-----------ccCccCcC
Q psy16753 78 ----------------------------------------HHVERARTVDALLKELGLLKC-----------KNSVLNVL 106 (156)
Q Consensus 78 ----------------------------------------~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~L 106 (156)
......+.+.++++.+++.+. .+....+|
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~L 580 (1466)
T PTZ00265 501 GNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKL 580 (1466)
T ss_pred cccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcC
Confidence 000112456677777766432 24556789
Q ss_pred ChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 107 SGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 107 SgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
|||||||++|||||+.+|+++| |||||+++|+.+..
T Consensus 581 SGGQkQRiaIARAll~~P~ILl--LDEpTSaLD~~se~ 616 (1466)
T PTZ00265 581 SGGQKQRISIARAIIRNPKILI--LDEATSSLDNKSEY 616 (1466)
T ss_pred CHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHH
Confidence 9999999999999999999988 99999999987544
No 334
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=5.4e-20 Score=130.22 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=102.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
++++-+.|.+.+.+ ..+|++++++++++.. ..++++|++||++.+||.++|.+|+.|..... ......++.+..
T Consensus 43 TLls~~~G~La~~F-~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~----~KG~aRr~~a~a 117 (213)
T COG4136 43 TLLSWMIGALAGQF-SCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT----LKGNARRNAANA 117 (213)
T ss_pred HHHHHHHhhcccCc-ceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc----cccHHHHhhHHH
Confidence 44555556555533 4689999999998754 34678999999999999999999998764322 233445567889
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.+++.++....++.+.+||||||-||++-|+|...|+.++ |||||+-+|+.
T Consensus 118 AL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL--LDEPFS~LD~A 168 (213)
T COG4136 118 ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALL--LDEPFSRLDVA 168 (213)
T ss_pred HHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceee--eCCchhHHHHH
Confidence 9999999998999999999999999999999999999998 99999999854
No 335
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-20 Score=152.88 Aligned_cols=122 Identities=27% Similarity=0.312 Sum_probs=96.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||++++.+++...+.|++|+|.++|.++.. ..+++.+++++|...+|.. |+++|+..+... ...+.+
T Consensus 375 sGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~---------AsDEel 444 (573)
T COG4987 375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD---------ASDEEL 444 (573)
T ss_pred CCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC---------CCHHHH
Confidence 677888888887777899999999998754 2467789999999988765 999999865321 123456
Q ss_pred HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.++|.+. .+.--+.||||||||++|||+|.++++++| |||||-|+||.+.
T Consensus 445 ~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l--LDEPTegLD~~TE 510 (573)
T COG4987 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL--LDEPTEGLDPITE 510 (573)
T ss_pred HHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE--ecCCcccCChhhH
Confidence 677777777543 233346799999999999999999999998 9999999999854
No 336
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.9e-20 Score=136.57 Aligned_cols=124 Identities=21% Similarity=0.289 Sum_probs=105.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++.++++.. ++|+|+++|.+++.. ..++.++.+.|+...-..+||++-+.|+. +....+....+++..
T Consensus 41 STLLS~~sRL~~~----d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGR-fPYSqGRlt~eD~~~ 115 (252)
T COG4604 41 STLLSMMSRLLKK----DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGR-FPYSQGRLTKEDRRI 115 (252)
T ss_pred HHHHHHHHHhccc----cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCC-CcccCCCCchHHHHH
Confidence 4677788888774 899999999998643 45677889999988888999999888764 322223345567788
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
+.++++.++|++..|++..+||||||||..||+.++++.++++ ||||-+.+|
T Consensus 116 I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl--LDEPLNNLD 167 (252)
T COG4604 116 INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL--LDEPLNNLD 167 (252)
T ss_pred HHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEE--ecCcccccc
Confidence 9999999999999999999999999999999999999999998 999999998
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.79 E-value=1.4e-19 Score=153.70 Aligned_cols=117 Identities=20% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEE-----------ECCEecCccc-----ccceeeEecCCCCCCCC---CCHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQIL-----------LNGLEVEKNL-----MVKVSGFVPQHDLTVDT---LTVHEHMTLMA 69 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~-----------~~G~~i~~~~-----~~~~ig~v~Q~~~~~~~---ltv~e~l~~~~ 69 (156)
.|++|+|+|++.| ++|+|. |+|.++.... ....+++.+|....++. .|+.+++...
T Consensus 113 STLlkiL~G~l~p----~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~- 187 (590)
T PRK13409 113 TTAVKILSGELIP----NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV- 187 (590)
T ss_pred HHHHHHHhCCccC----CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh-
Confidence 3788888888774 899997 9998874311 11235666665444332 2787776421
Q ss_pred HhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 70 RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
....++.++++.+++.+..++.+.+||||||||++||+||+.+|+++| |||||+|||+.++
T Consensus 188 -----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lll--LDEPts~LD~~~~ 248 (590)
T PRK13409 188 -----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYF--FDEPTSYLDIRQR 248 (590)
T ss_pred -----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence 123467889999999988899999999999999999999999999988 9999999998743
No 338
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=1.9e-19 Score=166.04 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=89.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|.|++. |++|+|.+||.++... ..|+.++++||++.+|.. |+++|+.... .. ..+.+
T Consensus 1351 TLl~lLlrl~~----p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~----sdeeI 1415 (1560)
T PTZ00243 1351 TLLLTFMRMVE----VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EA----SSAEV 1415 (1560)
T ss_pred HHHHHHhCCCC----CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CC----CHHHH
Confidence 45566666665 5899999999998643 467889999999999876 9999995321 11 12456
Q ss_pred HHHHHHcCCCcc-------ccCcc----CcCChHHHHHHHHHHHHhcC-CCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKC-------KNSVL----NVLSGGERKRVALAVQVSQD-CSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~-------~~~~~----~~LSgGerqrv~LA~AL~~~-p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++.+. .|..+ .+||||||||++|||||+.+ |+++| |||||+++|+.+.
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl--LDEATSaLD~~te 1482 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL--MDEATANIDPALD 1482 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE--EeCCCccCCHHHH
Confidence 677777776432 34444 57999999999999999995 89887 9999999997643
No 339
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.78 E-value=1.9e-19 Score=165.97 Aligned_cols=116 Identities=18% Similarity=0.120 Sum_probs=88.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|.|++. |++|+|.+||.|+... ..|+.++++||++.+|++ |+++|+.... .. ..+.+
T Consensus 1327 TL~~lL~rl~~----~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~----sdeei 1391 (1522)
T TIGR00957 1327 SLTLGLFRINE----SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QY----SDEEV 1391 (1522)
T ss_pred HHHHHHhcCcc----CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CC----CHHHH
Confidence 45566666655 6899999999998653 467889999999999986 9999996321 11 12345
Q ss_pred HHHHHHcCCCc-------cccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLK-------CKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~-------~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++..++.+ .+|..+ .+||||||||++||||++.+|+++| |||||+++|+.+
T Consensus 1392 ~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi--LDEaTSalD~~T 1456 (1522)
T TIGR00957 1392 WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILV--LDEATAAVDLET 1456 (1522)
T ss_pred HHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHH
Confidence 55666665532 234444 5699999999999999999999888 999999999764
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9e-19 Score=150.16 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=86.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC--CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|++. |++|+|.+++. ..+||++|+. .+.+..++.+++.. .. .......+
T Consensus 352 STLlk~l~G~~~----p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~ 410 (638)
T PRK10636 352 STLIKLLAGELA----PVSGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKL 410 (638)
T ss_pred HHHHHHHhCCCC----CCCCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHH
Confidence 367888888876 58999998641 2589999974 23445566665421 11 11223567
Q ss_pred HHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++. +..++++.+|||||||||+||++++.+|+++| |||||+|||+.+.
T Consensus 411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLl--LDEPt~~LD~~~~ 466 (638)
T PRK10636 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLL--LDEPTNHLDLDMR 466 (638)
T ss_pred HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence 8999999996 46789999999999999999999999999888 9999999998754
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=7.4e-19 Score=161.77 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=90.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. ++|+|++||.++... ..|+.++|+||++.+|++ |+++|+.... . ...+.+
T Consensus 1260 TLl~lL~rl~~-----~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei 1323 (1490)
T TIGR01271 1260 TLLSALLRLLS-----TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEI 1323 (1490)
T ss_pred HHHHHHhhhcC-----CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHH
Confidence 67778888764 589999999998643 467889999999999986 9999995321 1 112456
Q ss_pred HHHHHHcCCCcc-------ccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKC-------KNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~-------~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++.+++.+. +|..+ .+||||||||++|||||+.+|+++| |||||+++|+.+
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl--LDEaTS~lD~~T 1388 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL--LDEPSAHLDPVT 1388 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE--EeCCcccCCHHH
Confidence 677777777432 33333 3699999999999999999999888 999999999764
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=99.77 E-value=2.1e-18 Score=149.28 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=84.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|++++. ..+||++|+.. ..+++.++......... ... ..+.+.+
T Consensus 549 STLLk~L~Gll~----p~~G~I~~~~~--------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~-~~~----~~~~i~~ 609 (718)
T PLN03073 549 STILKLISGELQ----PSSGTVFRSAK--------VRMAVFSQHHV--DGLDLSSNPLLYMMRCF-PGV----PEQKLRA 609 (718)
T ss_pred HHHHHHHhCCCC----CCCceEEECCc--------eeEEEEecccc--ccCCcchhHHHHHHHhc-CCC----CHHHHHH
Confidence 367888888776 58999998652 35899999853 33445444322211111 111 1346788
Q ss_pred HHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.. ..++++.+||||||||++||+|++.+|+++| |||||+|+|+.+.
T Consensus 610 ~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL--LDEPT~~LD~~s~ 663 (718)
T PLN03073 610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL--LDEPSNHLDLDAV 663 (718)
T ss_pred HHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE--EcCCCCCCCHHHH
Confidence 999999974 6789999999999999999999999999998 9999999998754
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5e-18 Score=145.63 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=83.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHH-------------------
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA------------------- 69 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~------------------- 69 (156)
.|++|+|+|.+. |++|+|.++|.. .++|++|+...+ ..++.+++.-..
T Consensus 41 STLLkiL~G~~~----pd~G~I~~~~~~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 107 (638)
T PRK10636 41 STLLALLKNEIS----ADGGSYTFPGNW--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDG 107 (638)
T ss_pred HHHHHHHhCCCC----CCCceEEecCCC--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence 378888888776 589999998742 267777754322 234433322100
Q ss_pred ----Hhhcc-cCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 70 ----RLKMD-RNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 70 ----~~~~~-~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..... ..........++.++++.+|+. +..++++.+|||||||||+||+||+.+|+++| |||||+|||+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL--LDEPtn~LD~~~~ 185 (638)
T PRK10636 108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL--LDEPTNHLDLDAV 185 (638)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE--EcCCCCcCCHHHH
Confidence 00000 0000012235788999999997 46799999999999999999999999999888 9999999998754
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.8e-18 Score=125.83 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=101.9
Q ss_pred HHHHHHhhhhhc--CCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVH--ELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~--~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
||+++|+..+.+ .++.++|+|.|+|++++.. ..+.-+..-||+|.-++..++.+.+..+.+......-...+..
T Consensus 41 sGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~ 120 (251)
T COG0396 41 SGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFI 120 (251)
T ss_pred CCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHH
Confidence 344444444443 4667999999999999754 2344467789999999999999998876654321110123445
Q ss_pred HHHHHHHHHcCCCc-cccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 84 RTVDALLKELGLLK-CKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 84 ~~~~~~l~~~~L~~-~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
+.+++.++.+++.+ .+++.+. .+|||||+|..|+..++.+|++.| ||||.+|+|..+-..|
T Consensus 121 ~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~I--LDE~DSGLDIdalk~V 183 (251)
T COG0396 121 KELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI--LDEPDSGLDIDALKIV 183 (251)
T ss_pred HHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEE--ecCCCcCccHHHHHHH
Confidence 67889999999986 6677774 699999999999999999999888 9999999997755443
No 345
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.6e-18 Score=132.77 Aligned_cols=128 Identities=18% Similarity=0.140 Sum_probs=97.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEec-CCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVP-QHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~-Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|+|+|++.| ++|+|.++|.+.-.. ..-+++++++ |...+.-.+.+.+.+......+ ......-+++
T Consensus 64 STtLKmLTGll~p----~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r 136 (325)
T COG4586 64 STTLKMLTGLLLP----TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAER 136 (325)
T ss_pred hhhHHHHhCcccc----CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHH
Confidence 3789999999995 899999999876432 2234456553 3344444455666665543332 2334445578
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
...+.+.+++++.++.+++.||-|||.|+.||.||+++|++++ |||||-|+|+.++-.
T Consensus 137 ~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLf--LDEpTvgLDV~aq~~ 194 (325)
T COG4586 137 LDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLF--LDEPTVGLDVNAQAN 194 (325)
T ss_pred HHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEE--ecCCccCcchhHHHH
Confidence 8899999999999999999999999999999999999999998 999999999885543
No 346
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=2.6e-18 Score=124.23 Aligned_cols=75 Identities=24% Similarity=0.256 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|++|
T Consensus 40 STLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q--------------------------------- 82 (163)
T cd03216 40 STLMKILSGLYK----PDSGEILVDGKEVSFASPRDARRAGIAMVYQ--------------------------------- 82 (163)
T ss_pred HHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHHhcCeEEEEe---------------------------------
Confidence 367888888877 4899999999987532 12456788887
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+||+||++||+|++.+|+++| +||||+|+|+.+.
T Consensus 83 ---------------------LS~G~~qrl~laral~~~p~ill--lDEP~~~LD~~~~ 118 (163)
T cd03216 83 ---------------------LSVGERQMVEIARALARNARLLI--LDEPTAALTPAEV 118 (163)
T ss_pred ---------------------cCHHHHHHHHHHHHHhcCCCEEE--EECCCcCCCHHHH
Confidence 99999999999999999999998 9999999997643
No 347
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=141.35 Aligned_cols=121 Identities=23% Similarity=0.285 Sum_probs=85.0
Q ss_pred HHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH---
Q psy16753 11 GIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR--- 84 (156)
Q Consensus 11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--- 84 (156)
|+++|+..+.+...|++|.|.+||-++... ...+++||+||+..+|+. |+.||+.=+.. ..+..+.-+
T Consensus 374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~-----~~d~~kIieAA~ 447 (580)
T COG4618 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGE-----EADPEKVIEAAR 447 (580)
T ss_pred cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccc-----cCCHHHHHHHHH
Confidence 444444444444446999999999998754 346789999999999987 99999852211 111111111
Q ss_pred --HHHHHHHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 85 --TVDALLKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 85 --~~~~~l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.+.+++- .+.+-.|+.+ ..||||||||+++||||..+|.+++ ||||-+.+|..
T Consensus 448 lAgvHelIl--~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV--LDEPNsNLD~~ 506 (580)
T COG4618 448 LAGVHELIL--RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV--LDEPNSNLDSE 506 (580)
T ss_pred HcChHHHHH--hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE--ecCCCCCcchh
Confidence 1223332 3445566666 4699999999999999999999888 99999999964
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=3.7e-18 Score=157.21 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH-HHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA-RTVDA 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-~~~~~ 88 (156)
|++++|+|.+. |++|+|.++| .++|++|++.+++. |++||+.|+.... ........+ ..+.+
T Consensus 467 TLl~~l~G~~~----~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~~--~~~~~~~~~~~~L~~ 529 (1490)
T TIGR01271 467 SLLMMIMGELE----PSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSYD--EYRYTSVIKACQLEE 529 (1490)
T ss_pred HHHHHHhCCCC----CCCceEEECC----------EEEEEeCCCccCCc-cHHHHHHhccccc--hHHHHHHHHHHhHHH
Confidence 67777777777 4899999988 38999999998875 9999998763211 000000000 01122
Q ss_pred HHHHcCC--CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 89 LLKELGL--LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 89 ~l~~~~L--~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
.++.+.. ......+..+||||||||++||||++.+|+++| ||||++|+|+.++..
T Consensus 530 ~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ill--LDep~saLD~~~~~~ 586 (1490)
T TIGR01271 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFTHLDVVTEKE 586 (1490)
T ss_pred HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHHH
Confidence 2333221 112345678999999999999999999999998 999999999875433
No 349
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.1e-17 Score=137.93 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=98.2
Q ss_pred HHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC---CCCCCCCHHHHHHHHHHhh-ccc-CCcHHH
Q psy16753 11 GIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD---LTVDTLTVHEHMTLMARLK-MDR-NLHHVE 81 (156)
Q Consensus 11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~-~~~-~~~~~~ 81 (156)
++++|.|... +.+|+|.++|+++... ..+..++|+|.+- .++...++.+|+.+....+ ..+ ..+...
T Consensus 301 l~~~lfG~~~----~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~ 376 (500)
T COG1129 301 LARALFGARP----ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK 376 (500)
T ss_pred HHHHHhCCCc----CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHH
Confidence 5678888655 4799999999987532 2345689999984 5688999999998762212 111 234555
Q ss_pred HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
....+++..+.+++. +..++++..||||.||||.|||.|+.+|+++| +||||+|+|.=
T Consensus 377 e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLi--lDEPTRGIDVG 435 (500)
T COG1129 377 ERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLI--LDEPTRGIDVG 435 (500)
T ss_pred HHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEE--ECCCCcCcccc
Confidence 667888999999996 44578999999999999999999999999888 99999999964
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=1.1e-17 Score=121.98 Aligned_cols=124 Identities=21% Similarity=0.239 Sum_probs=96.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCC--CCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLT--VDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
++-|+|+|.+. |++|+|.++|+.+.-. ...+.+.++||++.. -|.+.+-+.+....++ ...+.....++
T Consensus 54 TLakMlaGmi~----PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~ 127 (267)
T COG4167 54 TLAKMLAGMIE----PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRK 127 (267)
T ss_pred HHHHHHhcccC----CCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHH
Confidence 56677788777 5999999999987532 334668899999764 3555555555444333 23456667778
Q ss_pred HHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 85 TVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 85 ~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++.+-++.+||- +..+-++..||.||||||++||||+.+|+++| .||.-+++|..
T Consensus 128 ~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iII--aDeAl~~LD~s 183 (267)
T COG4167 128 QIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIII--ADEALASLDMS 183 (267)
T ss_pred HHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEE--ehhhhhhccHH
Confidence 899999999995 56788999999999999999999999999887 99988888854
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=5e-18 Score=156.46 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
||+++|...+...++|++|.+. ..++.++|++|++.+++. |++||+.|+... ..+++.++
T Consensus 654 SGKSTLl~lLlG~~~~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~----------~~e~~~~v 713 (1495)
T PLN03232 654 EGKTSLISAMLGELSHAETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSDF----------ESERYWRA 713 (1495)
T ss_pred CcHHHHHHHHhCCCcccCCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCcc----------CHHHHHHH
Confidence 3444444444444445788663 235679999999999875 999999876321 22456666
Q ss_pred HHHcCCCccc-------cC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 90 LKELGLLKCK-------NS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 90 l~~~~L~~~~-------~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.+++.+.. ++ ...+||||||||++||||+..+|+++| |||||+++|+.+.
T Consensus 714 l~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL--LDEptSaLD~~t~ 776 (1495)
T PLN03232 714 IDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI--FDDPLSALDAHVA 776 (1495)
T ss_pred HHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHHH
Confidence 7766664221 22 334699999999999999999999998 9999999997643
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=7.6e-18 Score=155.87 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=82.0
Q ss_pred HHHHHHhhhhhcCCCCcc-eEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVD-GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~-G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
|++++|+|.+. |++ |+|.+ +..++|++|++.+++. |++||+.|+... +.+++.+
T Consensus 658 TLl~lLlG~~~----~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~----------d~e~y~~ 712 (1622)
T PLN03130 658 SLISAMLGELP----PRSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF----------DPERYER 712 (1622)
T ss_pred HHHHHHHHhhc----cCCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCcc----------cHHHHHH
Confidence 56677777766 578 89974 4568999999999875 999999876321 2345667
Q ss_pred HHHHcCCCccc-------cC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCK-------NS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~-------~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+.. ++ ...+||||||||++||||+..+|+++| |||||+++|+.+.
T Consensus 713 vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL--LDEptSALD~~~~ 776 (1622)
T PLN03130 713 AIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI--FDDPLSALDAHVG 776 (1622)
T ss_pred HHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE--ECCCccccCHHHH
Confidence 77777664321 22 335699999999999999999999998 9999999997643
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=2.6e-17 Score=141.13 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..++.++++.+++. .++++.+|||||||||+||+||+.+|+++| |||||+|+|+.+.
T Consensus 136 ~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLL--LDEPt~~LD~~~~ 192 (635)
T PRK11147 136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLL--LDEPTNHLDIETI 192 (635)
T ss_pred HHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCCccCHHHH
Confidence 45688999999996 378999999999999999999999999888 9999999998754
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.71 E-value=1.9e-17 Score=152.87 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=79.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++++|+|.+. |++|+|.++| .++|++|++.+++ .|++||+.++... +. ++.+++
T Consensus 679 TLl~~l~g~~~----~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~----~~~~~~ 733 (1522)
T TIGR00957 679 SLLSALLAEMD----KVEGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKAL------NE----KYYQQV 733 (1522)
T ss_pred HHHHHHhCCCc----cCCcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCcc------CH----HHHHHH
Confidence 56677777666 5899999987 4899999998764 6999999875321 11 122222
Q ss_pred HHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 90 LKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 90 l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.+++ ....+.+..+||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 734 ~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ill--LDEp~saLD~~~~ 796 (1522)
T TIGR00957 734 LEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL--FDDPLSAVDAHVG 796 (1522)
T ss_pred HHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EcCCccccCHHHH
Confidence 332222 123356678999999999999999999999998 9999999998644
No 355
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.5e-17 Score=120.02 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=97.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEe--cC--c-c------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLE--VE--K-N------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 77 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~--i~--~-~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~ 77 (156)
.|++++|.|.+.+ ++|+|++.-.. +. . . -.++-+|||.|.....|..+..+-....... .+.
T Consensus 51 Stllr~LYaNY~~----d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv 123 (235)
T COG4778 51 STLLRSLYANYLP----DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGV 123 (235)
T ss_pred HHHHHHHHhccCC----CCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCC
Confidence 4678888888885 89999886432 21 1 1 1245589999998888988888866554332 245
Q ss_pred cHHHHHHHHHHHHHHcCCCccc-cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 78 HHVERARTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.......++..++.++++.+.+ .-.+.++||||||||-|||+++.+=++++ |||||+++|..
T Consensus 124 ~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL--LDEPTasLDa~ 186 (235)
T COG4778 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL--LDEPTASLDAT 186 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE--ecCCccccccc
Confidence 5667778899999999997654 66789999999999999999999998887 99999999965
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.70 E-value=3.7e-17 Score=151.00 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++++|+|.+. |++|+|.+. +.+||++|++.+++ .|++||+.++..... ...........+.+.
T Consensus 701 TLL~~i~G~~~----~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~~~~-~~~~~~~~~~~l~~~ 764 (1560)
T PTZ00243 701 TLLQSLLSQFE----ISEGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDEEDA-ARLADAVRVSQLEAD 764 (1560)
T ss_pred HHHHHHhcCCC----CCCcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCChhhH-HHHHHHHHHhhhHHH
Confidence 56677777666 589999852 45899999998764 699999987432110 000000001123344
Q ss_pred HHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 90 LKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 90 l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++.+ |+....+++..+||||||||++||||++.+|+++| ||||++++|+.+
T Consensus 765 l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ill--LDEP~saLD~~~ 817 (1560)
T PTZ00243 765 LAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYL--LDDPLSALDAHV 817 (1560)
T ss_pred HHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EcCccccCCHHH
Confidence 5555 66656678889999999999999999999999998 999999999864
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=4.3e-17 Score=119.43 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.++|.+ ++|++|+..
T Consensus 39 STLl~~l~Gl~~----p~~G~i~~~g~~---------i~~~~q~~~---------------------------------- 71 (177)
T cd03222 39 TTAVKILAGQLI----PNGDNDEWDGIT---------PVYKPQYID---------------------------------- 71 (177)
T ss_pred HHHHHHHHcCCC----CCCcEEEECCEE---------EEEEcccCC----------------------------------
Confidence 377888888877 489999999863 577777432
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+|||||++||+|++.+|++++ +||||+|+|+.++
T Consensus 72 -----------------LSgGq~qrv~laral~~~p~lll--LDEPts~LD~~~~ 107 (177)
T cd03222 72 -----------------LSGGELQRVAIAAALLRNATFYL--FDEPSAYLDIEQR 107 (177)
T ss_pred -----------------CCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence 99999999999999999999888 9999999997753
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.69 E-value=6e-17 Score=114.88 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.+++++|+|+.. |++|+|+++|. ..++|++|
T Consensus 40 StLl~~l~G~~~----~~~G~i~~~~~--------~~i~~~~~------------------------------------- 70 (144)
T cd03221 40 STLLKLIAGELE----PDEGIVTWGST--------VKIGYFEQ------------------------------------- 70 (144)
T ss_pred HHHHHHHcCCCC----CCceEEEECCe--------EEEEEEcc-------------------------------------
Confidence 367888888876 48999999984 35788888
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
||+||+||++||+|++.+|+++| +|||++|+|+.+..
T Consensus 71 -----------------lS~G~~~rv~laral~~~p~ill--lDEP~~~LD~~~~~ 107 (144)
T cd03221 71 -----------------LSGGEKMRLALAKLLLENPNLLL--LDEPTNHLDLESIE 107 (144)
T ss_pred -----------------CCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHHHHH
Confidence 99999999999999999999888 99999999987544
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=133.32 Aligned_cols=118 Identities=18% Similarity=0.113 Sum_probs=88.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh-h-cccC----------
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-K-MDRN---------- 76 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~-~~~~---------- 76 (156)
.|+||+|+|... |++|+|...+- -.++|++|++...+..|+.+.+..+... . ....
T Consensus 43 STLLkilaG~~~----~~~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (530)
T COG0488 43 STLLKILAGELE----PDSGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110 (530)
T ss_pred HHHHHHHcCCCc----CCCCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 367788888776 58999975332 2479999999998888998877543211 0 0000
Q ss_pred ---------------CcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 77 ---------------LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 77 ---------------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
...-....++..++..+++.+. ++++.+||||+|.||+||+||..+|+++| ||||||.||..
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLL--LDEPTNHLD~~ 187 (530)
T COG0488 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLL--LDEPTNHLDLE 187 (530)
T ss_pred chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEE--EcCCCcccCHH
Confidence 0000123567788999999877 89999999999999999999999999888 99999999954
No 360
>KOG0054|consensus
Probab=99.66 E-value=1.4e-16 Score=143.53 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=87.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++++|.|.... .+|+|.++|. ++|+||++..++. |++||+.|+..+ ++++.+++
T Consensus 562 SLL~AiLGEm~~----~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~V 616 (1381)
T KOG0054|consen 562 SLLSAILGEMPK----LSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKV 616 (1381)
T ss_pred HHHHHHhcCccc----ccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHH
Confidence 677777777774 8999998887 7999999998765 999999987543 35678888
Q ss_pred HHHcCCCcccc-----------CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 90 LKELGLLKCKN-----------SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 90 l~~~~L~~~~~-----------~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++.+.|++..+ .+--+||||||||++||||+.+++++++ ||.|.+++|.-
T Consensus 617 i~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYL--LDDplSAVDah 677 (1381)
T KOG0054|consen 617 IKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYL--LDDPLSAVDAH 677 (1381)
T ss_pred HHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEE--EcCcchhhhHh
Confidence 99998864333 3335799999999999999999999999 99999999864
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.4e-16 Score=112.96 Aligned_cols=75 Identities=31% Similarity=0.457 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. +.+|+|+++|.++... ..+..++|++|
T Consensus 39 Stll~~l~g~~~----~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---------------------------------- 80 (157)
T cd00267 39 STLLRAIAGLLK----PTSGEILIDGKDIAKLPLEELRRRIGYVPQ---------------------------------- 80 (157)
T ss_pred HHHHHHHhCCCC----CCccEEEECCEEcccCCHHHHHhceEEEee----------------------------------
Confidence 367888888876 4899999999987532 23456788888
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+||+||++||+|++.+|++++ +||||+|+|+.+.
T Consensus 81 --------------------lS~G~~~r~~l~~~l~~~~~i~i--lDEp~~~lD~~~~ 116 (157)
T cd00267 81 --------------------LSGGQRQRVALARALLLNPDLLL--LDEPTSGLDPASR 116 (157)
T ss_pred --------------------CCHHHHHHHHHHHHHhcCCCEEE--EeCCCcCCCHHHH
Confidence 99999999999999999999998 9999999997643
No 362
>KOG0056|consensus
Probab=99.65 E-value=3.1e-17 Score=134.23 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.+++|.+.+. .++|.|.+||+|+.+- ..|+.||.|||+..+|++ |+..|+.++..-... .......++
T Consensus 579 TimRlLfRffd----v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~Asn---eevyaAAkA 650 (790)
T KOG0056|consen 579 TIMRLLFRFFD----VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASN---EEVYAAAKA 650 (790)
T ss_pred HHHHHHHHHhh----ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCCh---HHHHHHHHH
Confidence 45666666666 4899999999999653 568889999999999876 888888865322110 000011111
Q ss_pred HHH-HHHcCCCccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 87 DAL-LKELGLLKCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 87 ~~~-l~~~~L~~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+ =+.+++.+..+.++ -+|||||||||+|||++..+|.+++ |||.|+++|--
T Consensus 651 A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl--LDEATSALDT~ 708 (790)
T KOG0056|consen 651 AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL--LDEATSALDTN 708 (790)
T ss_pred hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE--EcchhhhcCCc
Confidence 111 12234444445555 4699999999999999999999888 99999999854
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.65 E-value=4e-16 Score=114.19 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=48.0
Q ss_pred HHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcC--CCeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQD--CSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~--p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.++.+++.. ..++++.+||+|||||++||+|++.+ |+++| +||||+|+|+.+..
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llL--lDEPt~~LD~~~~~ 126 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFI--LDEPSTGLHQQDIN 126 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEE--EeCCcccCCHHHHH
Confidence 3577888875 37889999999999999999999999 99888 99999999987443
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.64 E-value=2.3e-16 Score=117.38 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=77.0
Q ss_pred HHHHHHhhhhhcC-----CCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 10 SGIHLLGQRVVHE-----LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~-----~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
+++++|+|++.+. ..+..|++.+.|.+......+..++++||++..+ +. . . ..+
T Consensus 37 tll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~---~------~~~ 95 (197)
T cd03278 37 NIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--I---I------SQG 95 (197)
T ss_pred HHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--E---E------ehh
Confidence 6788888887542 1123467888888764433456799999998765 10 0 0 023
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCchh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~~ 142 (156)
++.++++. .+..++++.+||+|||||++||++++ .+|++++ +|||++|+|+..
T Consensus 96 ~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~ill--lDEP~~~LD~~~ 152 (197)
T cd03278 96 DVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCV--LDEVDAALDDAN 152 (197)
T ss_pred hHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEE--EeCCcccCCHHH
Confidence 45566666 45578889999999999999999997 4668887 999999999763
No 365
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.3e-17 Score=130.11 Aligned_cols=123 Identities=18% Similarity=0.252 Sum_probs=81.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc---ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~---~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
+.+++|.+.+. +++|.|.++|+++.. ...++.+|.+||+..+|++ |...|+.++..-..............+
T Consensus 304 TI~rllfRFyD----~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi 378 (497)
T COG5265 304 TILRLLFRFYD----VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQI 378 (497)
T ss_pred HHHHHHHHHhC----CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhh
Confidence 34455555555 589999999999854 3567889999999998765 888888765322110000000000111
Q ss_pred HHHHHHcCCCccccCccC----cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 87 DALLKELGLLKCKNSVLN----VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~----~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
...++ .+.+..+..++ .|||||||||+|||+++.+|++++ +||-|+.+|..
T Consensus 379 ~~fi~--~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~--~deatsaldt~ 433 (497)
T COG5265 379 HDFIQ--SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI--LDEATSALDTH 433 (497)
T ss_pred hHHHH--hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE--EehhhhHhhhh
Confidence 22222 22333455553 699999999999999999999888 99988888854
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.6e-15 Score=110.08 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=84.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEe-----cCc---cc----ccceeeEecCCCCC--CCCCC----HHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLE-----VEK---NL----MVKVSGFVPQHDLT--VDTLT----VHEHMTLMAR 70 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~-----i~~---~~----~~~~ig~v~Q~~~~--~~~lt----v~e~l~~~~~ 70 (156)
.++++||++.+.| ++|+|.|.-.+ +.. .+ ++..-|+|.|++.- -...+ +-|-+.....
T Consensus 46 tTLL~~is~rl~p----~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~ 121 (258)
T COG4107 46 TTLLKCISGRLTP----DAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121 (258)
T ss_pred HhHHHHHhcccCC----CCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh
Confidence 3688888888885 89999987532 211 11 22334899998742 22223 3333322211
Q ss_pred hhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 71 LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
-+ + ...+..+.+.++.+.++. ..|..++.+|||||||+.|||-|.+.|+++. +||||.|+|+-
T Consensus 122 RH--Y----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvf--MDEPTGGLDVS 185 (258)
T COG4107 122 RH--Y----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVF--MDEPTGGLDVS 185 (258)
T ss_pred hh--h----hhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEE--ecCCCCCcchh
Confidence 11 1 134456778899999974 4588999999999999999999999999888 99999999954
No 367
>KOG0054|consensus
Probab=99.59 E-value=1.9e-15 Score=136.33 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=88.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|+.++|.++..+ .+|+|.+||.|+... ..|.+++++||+|.+|.+ |++.|+--..++ .. +.+
T Consensus 1181 SL~~aLFRl~e~----~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~------sD----~~I 1245 (1381)
T KOG0054|consen 1181 SLILALFRLVEP----AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY------SD----DEI 1245 (1381)
T ss_pred HHHHHHHHhcCc----cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc------CH----HHH
Confidence 677888888885 899999999999764 468889999999999987 899988533211 11 223
Q ss_pred HHHHHHcCCC-------ccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLL-------KCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~-------~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
=+++|.++|. ..+|..+ .++|-||||-++|||||.++.+|++ |||.|+++|+.+
T Consensus 1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv--LDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV--LDEATASVDPET 1310 (1381)
T ss_pred HHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE--EecccccCChHH
Confidence 3444444443 2234444 5799999999999999999999988 999999999764
No 368
>KOG0065|consensus
Probab=99.57 E-value=1.1e-15 Score=136.20 Aligned_cols=135 Identities=28% Similarity=0.359 Sum_probs=108.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC-c---H-HHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL-H---H-VERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~-~---~-~~~~ 83 (156)
.++++.++|....... ..|+|.++|.+.+....+..++|++|+...++.+||+|.+.|.++.+.+... + + .+..
T Consensus 155 ttllkal~g~~~~~~~-~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~ 233 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLK-SSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLA 233 (1391)
T ss_pred HHHHHHHhCCCccccc-CCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHH
Confidence 5789999999887433 3459999999987654467789999999999999999999999887654221 1 1 1111
Q ss_pred HHHHHHHHHcCCCccccCcc-----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 84 RTVDALLKELGLLKCKNSVL-----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~-----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
...+.+++.+||+++.|..+ +..|||||+||++|-+++.+++++. +||+|+|+|..+++.+
T Consensus 234 ~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~--~De~t~GLDSsTal~i 299 (1391)
T KOG0065|consen 234 AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF--WDEITRGLDSSTAFQI 299 (1391)
T ss_pred HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee--eecccccccHHHHHHH
Confidence 24568899999998776665 6899999999999999999999888 9999999998877654
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.55 E-value=8.7e-15 Score=113.19 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=66.3
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcC---
Q psy16753 48 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQD--- 123 (156)
Q Consensus 48 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~--- 123 (156)
|..++...+..+|+.|++.|..... ...+..++++.++|.. ..++++.+|||||+||+.||++|+.+
T Consensus 120 ~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~ 190 (261)
T cd03271 120 YKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTG 190 (261)
T ss_pred cCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 3344444456789999887765331 1235668899999987 57999999999999999999999996
Q ss_pred CCeeEEecCCCCCCCCchhh
Q psy16753 124 CSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 124 p~ill~~~Dep~~g~~~~~~ 143 (156)
|+++| +||||+|+|+...
T Consensus 191 p~lll--LDEPtsgLD~~~~ 208 (261)
T cd03271 191 KTLYI--LDEPTTGLHFHDV 208 (261)
T ss_pred CcEEE--EECCCCCCCHHHH
Confidence 68887 9999999997643
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.55 E-value=2e-14 Score=120.57 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=86.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|.+.| .+|+|.+.-. -.+||+.|+.. ..+..|+.+++.-... ......++
T Consensus 362 STLlk~l~g~~~~----~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r 420 (530)
T COG0488 362 STLLKLLAGELGP----LSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVR 420 (530)
T ss_pred HHHHHHHhhhccc----CCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHH
Confidence 3677888887775 6999986332 23799999973 3467788887653221 01145688
Q ss_pred HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+..|++. +...+++..||||||.|+.+|+.++.+|.+|| ||||||-||..+.
T Consensus 421 ~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi--LDEPTNhLDi~s~ 475 (530)
T COG0488 421 AYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL--LDEPTNHLDIESL 475 (530)
T ss_pred HHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE--EcCCCccCCHHHH
Confidence 999999996 44588999999999999999999999999888 9999999997643
No 371
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=118.24 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=101.4
Q ss_pred HHHHHhhhhhcCCCCcceEEEECCEec-Ccc---c-ccceeeEecCCC---CCCCCCCHHHHHHHHHHhh---ccc-CCc
Q psy16753 11 GIHLLGQRVVHELSDVDGQILLNGLEV-EKN---L-MVKVSGFVPQHD---LTVDTLTVHEHMTLMARLK---MDR-NLH 78 (156)
Q Consensus 11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i-~~~---~-~~~~ig~v~Q~~---~~~~~ltv~e~l~~~~~~~---~~~-~~~ 78 (156)
++..|+|+..+ .+|+|.++|+++ ... . .+..++|+|++. .+.+.+|+.||+.+..... ..+ ...
T Consensus 300 L~eaisGlr~~----~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~ 375 (501)
T COG3845 300 LVEAISGLRKP----ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD 375 (501)
T ss_pred HHHHHhCCCcc----CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccC
Confidence 56788888865 579999999997 221 2 234579999984 5678999999997654221 111 245
Q ss_pred HHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 79 HVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
.....+.+.++++.|++. .....+++.||||.+||+-+||=+..+|+++| ...||+|+|.-++-+|
T Consensus 376 ~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI--~~qPTrGLDvgA~~~I 442 (501)
T COG3845 376 RRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI--AAQPTRGLDVGAIEFI 442 (501)
T ss_pred HHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEE--EcCCCccccHHHHHHH
Confidence 667778899999999997 34577789999999999999999999999888 9999999997766544
No 372
>PLN03073 ABC transporter F family; Provisional
Probab=99.54 E-value=6.5e-15 Score=127.70 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...++.++++.+|+. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.+.
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLl--LDEPt~~LD~~~~ 380 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLL--LDEPTNHLDLHAV 380 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence 345788899999996 45688999999999999999999999999888 9999999998754
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.53 E-value=1.7e-15 Score=116.48 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=85.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCE-ecCc-----ccccceeeEecCCCC---------CCCCCCHHHHHHHHHHhhcc
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGL-EVEK-----NLMVKVSGFVPQHDL---------TVDTLTVHEHMTLMARLKMD 74 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~-~i~~-----~~~~~~ig~v~Q~~~---------~~~~ltv~e~l~~~~~~~~~ 74 (156)
+++++|++++.+ ...|++.+.|. ++-. ......+++++|++. ..+.+++.+++.........
T Consensus 40 tll~Ai~~ll~~---~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~ 116 (251)
T cd03273 40 NILDAICFVLGI---TNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYL 116 (251)
T ss_pred HHHHHHHHHhcc---cccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEE
Confidence 567777777764 13568888776 3311 112346788999852 34566777666433211110
Q ss_pred cCCcHHHHHHHHHHHHHHcCCC--------------------ccccCccCcCChHHHHHHHHHHHHh----cCCCeeEEe
Q psy16753 75 RNLHHVERARTVDALLKELGLL--------------------KCKNSVLNVLSGGERKRVALAVQVS----QDCSRVVKI 130 (156)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~L~--------------------~~~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~ 130 (156)
.. ......+++.++++.+++. +..++++.+||+|||||++||+|++ .+|+++|
T Consensus 117 in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~ill-- 193 (251)
T cd03273 117 IN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYI-- 193 (251)
T ss_pred EC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEE--
Confidence 00 1112346788899999986 3346789999999999999999998 5779887
Q ss_pred cCCCCCCCCchhh
Q psy16753 131 TDSQPRGKWPISA 143 (156)
Q Consensus 131 ~Dep~~g~~~~~~ 143 (156)
+||||+|+|+.+.
T Consensus 194 lDEPt~~ld~~~~ 206 (251)
T cd03273 194 LDEVDAALDLSHT 206 (251)
T ss_pred EeCCCcCCCHHHH
Confidence 9999999997644
No 374
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=6e-14 Score=106.16 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=91.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|.+. |++|+|.++|.-..-.. + ...+-+.+|.+||+.+...+. ++..++..+++++
T Consensus 67 STLlkliaGi~~----Pt~G~v~v~G~v~~li~----l-----g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~e 130 (249)
T COG1134 67 STLLKLIAGIYK----PTSGKVKVTGKVAPLIE----L-----GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDE 130 (249)
T ss_pred HHHHHHHhCccC----CCCceEEEcceEehhhh----c-----ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHH
Confidence 367888888888 49999999998543211 1 122346789999998876553 4567788889999
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~ 140 (156)
+++..+|.+..|++++.+|.||+-|+++|.|...+|+++| +||-.+--|+
T Consensus 131 IieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILl--lDEvlavGD~ 180 (249)
T COG1134 131 IIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILL--LDEVLAVGDA 180 (249)
T ss_pred HHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEE--EehhhhcCCH
Confidence 9999999999999999999999999999999999999998 9995555554
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=1.6e-14 Score=110.24 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=69.3
Q ss_pred EEEECCEec----C--cccccceeeEecCCCCCCC-CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccC
Q psy16753 29 QILLNGLEV----E--KNLMVKVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 101 (156)
Q Consensus 29 ~I~~~G~~i----~--~~~~~~~ig~v~Q~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~ 101 (156)
+|.|++.+. . ....++.+++++|+..+++ ..+..+...+......... ..... ....++.+.+++.+..++
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~-~~~~~-~~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRS-NPYYI-VPQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCC-CCcEE-EEcCchHHhhhccccccc
Confidence 666666321 1 1234566899998877765 3566665544433221110 00000 001123344556666778
Q ss_pred ccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchhh
Q psy16753 102 VLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.+||+|||||++||+|++. +|+++| +||||+|+||.+.
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~ill--lDEp~~~ld~~~~ 198 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYL--FDEIDAALDAQYR 198 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEE--EECCccCCCHHHH
Confidence 899999999999999999973 578887 9999999998743
No 376
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.46 E-value=8.1e-14 Score=113.43 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=86.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|+.++|+|.+.| ++|. ..+ -.++|=||....-...||.+.+.-...... .....-.+
T Consensus 381 TTFvk~LAG~ikP----deg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~-------~~s~~~~e 438 (591)
T COG1245 381 TTFVKLLAGVIKP----DEGS----EED-------LKVSYKPQYISPDYDGTVEDLLRSAIRSAF-------GSSYFKTE 438 (591)
T ss_pred HHHHHHHhccccC----CCCC----Ccc-------ceEeecceeecCCCCCcHHHHHHHhhhhhc-------ccchhHHh
Confidence 3677888888885 7886 222 236788888666567799887654322211 11223457
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
+++-++|++..++++.+|||||.|||+||.||..++++++ ||||++=||+-..+.+
T Consensus 439 i~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl--lDEPSA~LDvEqR~~v 494 (591)
T COG1245 439 IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL--LDEPSAYLDVEQRIIV 494 (591)
T ss_pred hcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEE--ecCchhhccHHHHHHH
Confidence 7899999999999999999999999999999999999999 9999999997655543
No 377
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.42 E-value=2.7e-13 Score=102.87 Aligned_cols=54 Identities=30% Similarity=0.352 Sum_probs=48.6
Q ss_pred HHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~ 142 (156)
.+.++.+++.+ ..++++.+||||||||++||+|++.+| +++| +||||+|+|+.+
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll--lDEPt~gLD~~~ 174 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV--LDEPSIGLHPRD 174 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE--EeCCccCCCHHH
Confidence 56899999986 479999999999999999999999998 5887 999999999764
No 378
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.38 E-value=5.9e-13 Score=112.23 Aligned_cols=113 Identities=21% Similarity=0.162 Sum_probs=84.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|+-+- -+|+|.+- ....+-|+||.+.+... |.+|.+.+..... ....+.+.+
T Consensus 433 TsLlRaiaGLWP~----g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~-------~~~d~~l~~ 492 (604)
T COG4178 433 TSLLRALAGLWPW----GSGRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAP-------DFSDAELVA 492 (604)
T ss_pred HHHHHHHhccCcc----CCCceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC-------CCChHHHHH
Confidence 3788999999885 36776542 12236799999987655 9999887543211 123356778
Q ss_pred HHHHcCCCccccCc------cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSV------LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~------~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++.+++|.+..++. -+.||+|||||+++||.+.++|++++ |||-|+++|+.+.
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~--LDEATsALDe~~e 551 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVF--LDEATSALDEETE 551 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEE--EecchhccChHHH
Confidence 89999997544322 25799999999999999999999998 9999999997743
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.36 E-value=3.7e-13 Score=100.63 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC-----CCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL-----TVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~-----~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
|++++|.....+...+.+|.+..+...+.....+..+++++|+.. ....+++.+++.+.. ..
T Consensus 37 TLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~-------------~~ 103 (204)
T cd03240 37 TIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCH-------------QG 103 (204)
T ss_pred HHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeec-------------hH
Confidence 445555322223222466766522222232333556888888872 233446666664320 11
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHH------HHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKR------VALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqr------v~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.+ ++.+++||+||+|| +++|+|++.+|+++| +|||++|+|+....
T Consensus 104 ~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill--lDEP~~~LD~~~~~ 158 (204)
T cd03240 104 ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA--LDEPTTNLDEENIE 158 (204)
T ss_pred HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE--EcCCccccCHHHHH
Confidence 122222 67889999999996 788999999999988 99999999987544
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.36 E-value=9.2e-14 Score=100.93 Aligned_cols=120 Identities=19% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++-.++|++. .+|+|.++|.++... ...+..+|+.|+......+.|+.++... . +.+.....+
T Consensus 40 TLLA~lAGm~~-----~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i 106 (248)
T COG4138 40 TLLARMAGMTS-----GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELL 106 (248)
T ss_pred HHHHHHhCCCC-----CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHH
Confidence 45556667666 599999999998643 4467789999988776677887776532 1 223455678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh-----cCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS-----QDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~-----~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++...+++.+.+.+.+.+|||||=|||-+|.... .+|.-=+|+||||.+++|...
T Consensus 107 ~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ 167 (248)
T COG4138 107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ 167 (248)
T ss_pred HHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHH
Confidence 88899999999999999999999999999997654 355555566999999999763
No 381
>KOG0927|consensus
Probab=99.27 E-value=6.5e-12 Score=103.99 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=76.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
||+|+++|.+. |+.|.|.-.-... +++..|+.. +-...++.+++.-. . ......+.++
T Consensus 431 TLlKl~~gdl~----p~~G~vs~~~H~~--------~~~y~Qh~~e~ldl~~s~le~~~~~---~-----~~~~~~e~~r 490 (614)
T KOG0927|consen 431 TLLKLITGDLQ----PTIGMVSRHSHNK--------LPRYNQHLAEQLDLDKSSLEFMMPK---F-----PDEKELEEMR 490 (614)
T ss_pred hhHHHHhhccc----ccccccccccccc--------chhhhhhhHhhcCcchhHHHHHHHh---c-----cccchHHHHH
Confidence 56677777777 4888886433221 234444422 22344555554321 1 1123446788
Q ss_pred HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753 88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~ 140 (156)
.++.++||. +..+.++++||.|||.||.+|+..+..|.++| |||||+|+|-
T Consensus 491 ~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLl--LDEPtnhLDi 542 (614)
T KOG0927|consen 491 SILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLL--LDEPTNHLDI 542 (614)
T ss_pred HHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEE--ecCCCcCCCc
Confidence 999999998 56788899999999999999999999999888 9999999983
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.25 E-value=1.6e-11 Score=113.79 Aligned_cols=86 Identities=21% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHh---cCCCeeEEe
Q psy16753 55 TVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVS---QDCSRVVKI 130 (156)
Q Consensus 55 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~---~~p~ill~~ 130 (156)
.+...|+.|++.+...-............+++ +.++.+++... .++++.+|||||+||+.||+||+ .+|+++|
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLI-- 835 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYV-- 835 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEE--
Confidence 45677888988765432111111223344556 58899999876 79999999999999999999998 6999888
Q ss_pred cCCCCCCCCchhh
Q psy16753 131 TDSQPRGKWPISA 143 (156)
Q Consensus 131 ~Dep~~g~~~~~~ 143 (156)
|||||+|+|+.+.
T Consensus 836 LDEPTsGLD~~~~ 848 (1809)
T PRK00635 836 LDEPTTGLHTHDI 848 (1809)
T ss_pred EeCCCCCCCHHHH
Confidence 9999999997643
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.23 E-value=2.1e-11 Score=108.22 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHhhcccC---C---cHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--Ce
Q psy16753 56 VDTLTVHEHMTLMARLKMDRN---L---HHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SR 126 (156)
Q Consensus 56 ~~~ltv~e~l~~~~~~~~~~~---~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~i 126 (156)
+..+++.+.+.|......... . -..+..+++ +.++.+||... .++++.+|||||+||+.||+||+.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346788887777543321100 0 001223344 36888999765 79999999999999999999999997 66
Q ss_pred eEEecCCCCCCCCchhh
Q psy16753 127 VVKITDSQPRGKWPISA 143 (156)
Q Consensus 127 ll~~~Dep~~g~~~~~~ 143 (156)
+| |||||+||||..+
T Consensus 513 lI--LDEPtagLd~~~~ 527 (943)
T PRK00349 513 YV--LDEPSIGLHQRDN 527 (943)
T ss_pred EE--ecCCccCCCHHHH
Confidence 66 9999999998743
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.22 E-value=1.3e-11 Score=91.88 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCch
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+.++++. .+..++++++||+|||||++||+|+ +.+|+++| +|||++|+|+.
T Consensus 91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~ill--lDEP~~glD~~ 147 (198)
T cd03276 91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRC--LDEFDVFMDMV 147 (198)
T ss_pred HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEE--ecCcccccCHH
Confidence 456667766 5667889999999999999999999 58999998 99999999975
No 385
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.20 E-value=4.3e-11 Score=106.32 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCC
Q psy16753 58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDS 133 (156)
Q Consensus 58 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~De 133 (156)
++|+.|++.|..... .. .+..+.++.++|.. ..++++.+|||||+||+.||++|+.+| +++| |||
T Consensus 791 ~ltv~E~l~~f~~~~--------~i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llI--LDE 859 (943)
T PRK00349 791 DMTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYI--LDE 859 (943)
T ss_pred cCcHHHHHHHHHhch--------hh-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEE--EEC
Confidence 467888877654321 11 23457899999976 478999999999999999999999999 8777 999
Q ss_pred CCCCCCchhh
Q psy16753 134 QPRGKWPISA 143 (156)
Q Consensus 134 p~~g~~~~~~ 143 (156)
||+|+|+...
T Consensus 860 PtsGLD~~~~ 869 (943)
T PRK00349 860 PTTGLHFEDI 869 (943)
T ss_pred CCCCCCHHHH
Confidence 9999997643
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=5.8e-11 Score=105.29 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=46.2
Q ss_pred HHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~~ 143 (156)
+.+..++|... .++.+.+|||||+||+.||++|+.+| +++| |||||+||||.++
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llI--LDEPtagLD~~~~ 525 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYV--LDEPSIGLHQRDN 525 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEE--EcCCccCCCHHHH
Confidence 34778888765 68999999999999999999999987 6665 9999999998743
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.16 E-value=6.6e-12 Score=93.84 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCCcc---ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKC---KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~---~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++-+++.++|+.+. ...++.+|.-||.|||+||+|++.+|+++| .||||+.++|+++.
T Consensus 133 KrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLI--ADEPTN~~e~~Tq~ 195 (330)
T COG4170 133 KRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLI--ADEPTNSMEPTTQA 195 (330)
T ss_pred HHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEe--ccCCCcccCccHHH
Confidence 4567799999999754 357789999999999999999999999887 99999999998653
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=1e-10 Score=103.71 Aligned_cols=76 Identities=22% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhc---CCCeeEEecC
Q psy16753 57 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQ---DCSRVVKITD 132 (156)
Q Consensus 57 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~---~p~ill~~~D 132 (156)
.++|+.|.+.|..... .. .+..++++.++|.. ..++++.+|||||+||+.||++|+. +|+++| ||
T Consensus 788 l~~tv~e~~~f~~~~~--------~i-~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI--LD 856 (924)
T TIGR00630 788 LDMTVEEAYEFFEAVP--------SI-SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYI--LD 856 (924)
T ss_pred hCCcHHHHHHHHHhcc--------ch-hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEE--EE
Confidence 4567777776654321 01 13457899999975 4689999999999999999999997 488887 99
Q ss_pred CCCCCCCchhh
Q psy16753 133 SQPRGKWPISA 143 (156)
Q Consensus 133 ep~~g~~~~~~ 143 (156)
|||+|+|+...
T Consensus 857 EPtsgLD~~~~ 867 (924)
T TIGR00630 857 EPTTGLHFDDI 867 (924)
T ss_pred CCCCCCCHHHH
Confidence 99999998743
No 389
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.13 E-value=2e-11 Score=91.84 Aligned_cols=98 Identities=12% Similarity=-0.013 Sum_probs=66.1
Q ss_pred ceeeEecCCCCCCCCCCHHHHHHHHHHhhc-----ccCCcHHHHHH--HHHHHHHHcCCCccccCccCcCChHHHHHHHH
Q psy16753 44 KVSGFVPQHDLTVDTLTVHEHMTLMARLKM-----DRNLHHVERAR--TVDALLKELGLLKCKNSVLNVLSGGERKRVAL 116 (156)
Q Consensus 44 ~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~L 116 (156)
..+++++++...++.+++.+...+...... ..+........ ...++.+.+++.+..++++..||+|||||++|
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~l 138 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSL 138 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHH
Confidence 457888888777777777665443321100 00110000000 12466678888888888999999999999999
Q ss_pred HHHHhc----CCCeeEEecCCCCCCCCchhh
Q psy16753 117 AVQVSQ----DCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 117 A~AL~~----~p~ill~~~Dep~~g~~~~~~ 143 (156)
|+|++. +|++++ +||||+|+||.+.
T Consensus 139 a~al~~~~~~~p~ili--lDEPt~gLD~~~~ 167 (212)
T cd03274 139 ALVFALHHYKPTPLYV--MDEIDAALDFRNV 167 (212)
T ss_pred HHHHHhcccCCCCEEE--EcCCCcCCCHHHH
Confidence 999974 478887 9999999998744
No 390
>KOG0060|consensus
Probab=99.11 E-value=1.1e-10 Score=97.36 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=81.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|+++++.|+-+. .+|++..-...-. ..+-|+||.|.+..+ |.++.+.+....-. ...+....+++..
T Consensus 475 tSLlRvlggLWp~----~~G~l~k~~~~~~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 475 TSLLRVLGGLWPS----TGGKLTKPTDGGP-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSASDEDILR 542 (659)
T ss_pred hHHHHHHhccccc----CCCeEEecccCCC-----CceEEecCCCCcccc-chhheeeccCcccc--ccccCCCHHHHHH
Confidence 3788888888884 7898875433211 236799999987655 99999877521100 0111122345666
Q ss_pred HHHHcCCCccc------cCcc-----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753 89 LLKELGLLKCK------NSVL-----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 89 ~l~~~~L~~~~------~~~~-----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~ 140 (156)
.++.+++.+.. |+.+ ..||+|||||++.||-+.++|++-+ |||.|.+++.
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~Ai--LDE~TSAv~~ 603 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAI--LDECTSAVTE 603 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEE--eechhhhccH
Confidence 66666664322 3222 4699999999999999999999998 9999988874
No 391
>KOG0927|consensus
Probab=99.10 E-value=9.9e-11 Score=97.07 Aligned_cols=60 Identities=25% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
....++.+++..++.. +..++.+.+||||+|+|++|||+|..+|++++ |||||+|||+.+
T Consensus 196 ~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLL--LDEPtnhLDleA 256 (614)
T KOG0927|consen 196 TFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL--LDEPTNHLDLEA 256 (614)
T ss_pred hHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEE--ecCCccCCCHHH
Confidence 3444566677777664 56789999999999999999999999999888 999999999764
No 392
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.09 E-value=6.8e-11 Score=88.82 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=42.5
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHHHHHhc----------CCCeeEEecCCCCCCCCchh
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ----------DCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~----------~p~ill~~~Dep~~g~~~~~ 142 (156)
++..++.+..++++.+||+||+||++||+|++. +|+++| +||||+|+|+.+
T Consensus 108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll--lDEp~~~lD~~~ 168 (213)
T cd03279 108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF--IDEGFGTLDPEA 168 (213)
T ss_pred hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE--EeCCcccCCHHH
Confidence 444556667788999999999999999999985 457776 999999999863
No 393
>KOG0062|consensus
Probab=99.07 E-value=2.4e-10 Score=94.34 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHH
Q psy16753 11 GIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALL 90 (156)
Q Consensus 11 ~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 90 (156)
.+|++.|-.. |++|.+.+ ..+.+++|.+|+..-+....+...- +....+ .+ ...+.+++-+
T Consensus 406 ~lKi~~~~l~----~~rgi~~~--------~~r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~--pG----~~~ee~r~hl 466 (582)
T KOG0062|consen 406 LLKILKGDLT----PTRGIVGR--------HPRLRIKYFAQHHVDFLDKNVNAVD-FMEKSF--PG----KTEEEIRRHL 466 (582)
T ss_pred HHHHHhccCC----cccceeee--------cccceecchhHhhhhHHHHHhHHHH-HHHHhC--CC----CCHHHHHHHH
Confidence 3455555444 46776543 2256689999987655444443322 222222 12 2456788889
Q ss_pred HHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 91 KELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 91 ~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..||+. +...+.+..||||||-||++|.+...+|-++| |||||+-||-.
T Consensus 467 ~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV--LDEPTNhLD~d 516 (582)
T KOG0062|consen 467 GSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV--LDEPTNHLDRD 516 (582)
T ss_pred HhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE--ecCCCccccHH
Confidence 999997 44566689999999999999999999999888 99999999854
No 394
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.02 E-value=2.8e-10 Score=87.33 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCcc----------------------ccCccCcCChHHHHHHHHHHHHhcC----CCeeEEecCCCCCC
Q psy16753 84 RTVDALLKELGLLKC----------------------KNSVLNVLSGGERKRVALAVQVSQD----CSRVVKITDSQPRG 137 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~----------------------~~~~~~~LSgGerqrv~LA~AL~~~----p~ill~~~Dep~~g 137 (156)
+.++++++.+++... .++++.+||+|||||++||+|++.+ |+++| +||||+|
T Consensus 112 ~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll--lDEPt~~ 189 (247)
T cd03275 112 KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV--LDEVDAA 189 (247)
T ss_pred HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE--Eeccccc
Confidence 345677788887421 2344589999999999999999864 88887 9999999
Q ss_pred CCch
Q psy16753 138 KWPI 141 (156)
Q Consensus 138 ~~~~ 141 (156)
+|+.
T Consensus 190 LD~~ 193 (247)
T cd03275 190 LDNT 193 (247)
T ss_pred CCHH
Confidence 9975
No 395
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.01 E-value=3e-10 Score=105.62 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=47.2
Q ss_pred HHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~~~ 144 (156)
+.+..+++... .++.+.+|||||+||+.||+||+.+| +++| |||||+|||+.++.
T Consensus 458 ~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLI--LDEPTagLD~~~~~ 515 (1809)
T PRK00635 458 SILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYI--LDEPSIGLHPQDTH 515 (1809)
T ss_pred HHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEE--EECCccCCCHHHHH
Confidence 34567788765 68999999999999999999999999 6776 99999999987543
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.89 E-value=1e-09 Score=89.88 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
..+++++.++|.+..++.+.+|||||.||++||.|++.++++++ +|||++=||....+.+
T Consensus 193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~--FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYF--FDEPSSYLDIRQRLNA 252 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEE--EcCCcccccHHHHHHH
Confidence 57789999999999999999999999999999999999999998 9999999997765543
No 397
>KOG0066|consensus
Probab=98.82 E-value=7.2e-09 Score=84.94 Aligned_cols=108 Identities=22% Similarity=0.156 Sum_probs=74.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCC--CCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDL--TVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.+++++|.|-+. |++|+.. ...+-+||+..|+.. +-..-|..|++.-.. +++ ...+
T Consensus 627 STlLkLL~Gkl~----P~~GE~R--------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlp----yq~A 684 (807)
T KOG0066|consen 627 STLLKLLIGKLD----PNDGELR--------KNHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLP----YQEA 684 (807)
T ss_pred HHHHHHHhcCCC----CCcchhh--------ccceeeeechhhhhHHhhccccCHHHHHHHhc------CCC----hHHH
Confidence 466777777766 4788654 122445788877743 223345555543221 111 2356
Q ss_pred HHHHHHcCCCcccc-CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753 87 DALLKELGLLKCKN-SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 87 ~~~l~~~~L~~~~~-~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~ 140 (156)
+..+-.|||....+ -.+.+|||||+-||++|---+..|+++| |||||+.+|-
T Consensus 685 RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlI--LDEPTNNLDI 737 (807)
T KOG0066|consen 685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLI--LDEPTNNLDI 737 (807)
T ss_pred HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEE--ecCCCCCcch
Confidence 67789999975553 3568999999999999999999999887 9999999984
No 398
>KOG0062|consensus
Probab=98.81 E-value=5.1e-09 Score=86.64 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 86 VDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 86 ~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+++.-+|+.+ ...+++++||||=|.|++|||||..+|++|+ |||||+-||..
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL--LDEPTNhLDv~ 232 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL--LDEPTNHLDVV 232 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe--ecCCcccchhH
Confidence 334888999975 4578889999999999999999999999998 99999999865
No 399
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.79 E-value=2.5e-09 Score=86.41 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=72.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||+++++-+..+++.|++|+|++||.++..+ ..|+..+-+|.+..+|+.+- ...+ +...+.+
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~---~as~q~i 424 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEG---KASPQLI 424 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCcc---CCChHHH
Confidence 3444444444444446999999999998754 33444555555544444321 1111 1122345
Q ss_pred HHHHHHcCCCcc---ccC--ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 87 DALLKELGLLKC---KNS--VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 87 ~~~l~~~~L~~~---~~~--~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+..++++.+.+. .|. ..-+||.|||+|+++..|++-+-++++ +||=-+--||.
T Consensus 425 ~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv--~DEWAADQDPa 482 (546)
T COG4615 425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV--LDEWAADQDPA 482 (546)
T ss_pred HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE--eehhhccCChH
Confidence 555666655432 122 235799999999999999999999988 99977777776
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.75 E-value=6e-09 Score=78.48 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.7
Q ss_pred cccCccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCchh
Q psy16753 98 CKNSVLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 98 ~~~~~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+..+.+||+||||++.++.++ +.+|+++| +|||++|+|+..
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~lll--lDEP~~~LD~~~ 165 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRV--VDEINQGMDPTN 165 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEE--EecccccCCHHH
Confidence 34667889999999998877554 58999887 999999999763
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.69 E-value=1.5e-08 Score=74.25 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCchhh
Q psy16753 106 LSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 106 LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~~~ 143 (156)
||+||+||++||++++ .+|++++ +|||++|+|+...
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~lli--lDEp~~~LD~~~~ 134 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYV--LDEIDAALDPTNR 134 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEE--EECCCCCCCHHHH
Confidence 9999999999999996 6899887 9999999997643
No 402
>KOG0063|consensus
Probab=98.64 E-value=4.4e-08 Score=79.93 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhhcCCCCcce-EEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDG-QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G-~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.+++++++|.+.| ++| +|-. -.++|=||....-..-|+++.+.-- .+. .-.+...+.
T Consensus 381 TTfi~mlag~~~p----d~~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~k--Ir~-----ay~~pqF~~ 438 (592)
T KOG0063|consen 381 TTFIRMLAGRLKP----DEGGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTK--IRD-----AYMHPQFVN 438 (592)
T ss_pred hHHHHHHhcCCCC----CccCcccc-----------cceeccccccCccccchHHHHHHHH--hHh-----hhcCHHHHH
Confidence 4678888887775 343 2211 1245666665443445677654321 211 112234567
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
+.++-+.+++..|+.+.+|||||+||+++|.+|-..+++++ .|||.+=+|..+++.+
T Consensus 439 dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYl--iDEpsAylDSeQRi~A 495 (592)
T KOG0063|consen 439 DVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYL--IDEPSAYLDSEQRIIA 495 (592)
T ss_pred hhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEE--ecCchhhcChHHHHHH
Confidence 88888889888999999999999999999999999999998 9999999998877654
No 403
>KOG0064|consensus
Probab=98.64 E-value=1.8e-08 Score=83.97 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHH---HhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA---RLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~---~~~~~~~~~~~~~~~~~ 86 (156)
|++++|.|+-+. ..|... . +..+.+-|+||.|.+- .-|.+|.+.+.. .++. +++. ....
T Consensus 523 SLfRILggLWPv----y~g~L~------~--P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~-kg~~----d~dL 584 (728)
T KOG0064|consen 523 SLFRILGGLWPV----YNGLLS------I--PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKR-KGYT----DQDL 584 (728)
T ss_pred HHHHHHhccCcc----cCCeee------c--CCCcceEeccCCCccC-cCcccceeecCCcHHHHHh-cCCC----HHHH
Confidence 556666666553 233332 1 2234588999999875 557788776532 1211 1221 2234
Q ss_pred HHHHHHcCCCccccCcc---------CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 87 DALLKELGLLKCKNSVL---------NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~---------~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+++.+.|++.+.+-. ..||||||||++.||.+.++|+..+ |||-|+++.+.
T Consensus 585 ~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyal--LDEcTsAvsid 646 (728)
T KOG0064|consen 585 EAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYAL--LDECTSAVSID 646 (728)
T ss_pred HHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhh--hhhhhcccccc
Confidence 55566666554332222 3599999999999999999999998 99988877543
No 404
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.59 E-value=4.4e-08 Score=83.04 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHh----------cCCCeeEEecCCCC-CCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS----------QDCSRVVKITDSQP-RGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~----------~~p~ill~~~Dep~-~g~~~~ 141 (156)
..++..|.. +..+..|||||+||++||+|++ .+|+++| +|||| +|+|+.
T Consensus 454 ~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~li--lDEp~~~~ld~~ 513 (562)
T PHA02562 454 ETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLI--LDEVFDGALDAE 513 (562)
T ss_pred hHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEE--EecccCcccchh
Confidence 344444432 3467899999999999999987 5899887 99998 679976
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=4.6e-08 Score=76.28 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.1
Q ss_pred CcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchh
Q psy16753 104 NVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~ 142 (156)
..||+||+||+++|++++. +|++++ +|||++|+|+..
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vll--lDEp~~~Ld~~~ 209 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLI--FDEIDTGISGEV 209 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEE--EECCccCCCHHH
Confidence 3499999999999987654 999888 999999999773
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.51 E-value=7.6e-08 Score=69.34 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=33.0
Q ss_pred CcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchh
Q psy16753 104 NVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~ 142 (156)
.+||+||+||+.+|++++. +|++++ +|||++|+|+..
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~lll--lDEp~~gld~~~ 116 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYI--LDEIDRGLDPRD 116 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEE--EeCCCCCCCHHH
Confidence 4699999999999999987 678777 999999999874
No 407
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=9.5e-08 Score=86.57 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=39.0
Q ss_pred CccccCccCcCChHHHHHHHHHHHHhc----------CCCeeEEecCCCCCCCCchh
Q psy16753 96 LKCKNSVLNVLSGGERKRVALAVQVSQ----------DCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 96 ~~~~~~~~~~LSgGerqrv~LA~AL~~----------~p~ill~~~Dep~~g~~~~~ 142 (156)
....++++.+|||||++|++||+||+. +|++++ +||||+|+|+.+
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~--lDEp~~~LD~~~ 995 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLF--IDEGFGSLDEDS 995 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEE--ecCCCCCCCHHH
Confidence 345567889999999999999999985 788887 999999999774
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.48 E-value=3.5e-07 Score=79.50 Aligned_cols=72 Identities=25% Similarity=0.291 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCC
Q psy16753 58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDS 133 (156)
Q Consensus 58 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~De 133 (156)
.+||.|-..|+.... .. .+.-+.+..+||.- .+.++..+|||||-||+-||.-|..+. .++| |||
T Consensus 783 ~MTveEA~~FF~~~p--------~I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYi--LDE 851 (935)
T COG0178 783 DMTVEEALEFFEAIP--------KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYI--LDE 851 (935)
T ss_pred hccHHHHHHHHhcch--------HH-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEE--eCC
Confidence 567777666554211 12 23446677899974 358899999999999999999999888 8888 999
Q ss_pred CCCCCCc
Q psy16753 134 QPRGKWP 140 (156)
Q Consensus 134 p~~g~~~ 140 (156)
||.||+.
T Consensus 852 PTTGLH~ 858 (935)
T COG0178 852 PTTGLHF 858 (935)
T ss_pred CCCCCCH
Confidence 9999963
No 409
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.42 E-value=2e-07 Score=84.50 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=37.4
Q ss_pred cCccCcCChHHHHHHHHHHHHhc--------CCCeeEEecCCCCCCCCchh
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQ--------DCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~--------~p~ill~~~Dep~~g~~~~~ 142 (156)
++++..|||||+++++||+||+. +|++++ +||||+|+|+.+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~--lDEp~~~lD~~~ 992 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLF--LDEGFGTLDSET 992 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEE--EeCCCCcCCHHH
Confidence 47889999999999999999995 889887 999999999875
No 410
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.41 E-value=1.7e-07 Score=79.89 Aligned_cols=38 Identities=34% Similarity=0.389 Sum_probs=32.9
Q ss_pred CcCChHHHHHHHHHHHHhcC----CCeeEEecCCCCCCCCchhh
Q psy16753 104 NVLSGGERKRVALAVQVSQD----CSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~~----p~ill~~~Dep~~g~~~~~~ 143 (156)
..+||||+||++||++++.. |+++| +|||++|+|+.++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~li--lDEp~~gld~~~~ 480 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLI--FDEVDVGVSGETA 480 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEE--EECCCCCCCHHHH
Confidence 46899999999999999985 57776 9999999997643
No 411
>PRK10869 recombination and repair protein; Provisional
Probab=98.37 E-value=2.6e-07 Score=78.60 Aligned_cols=36 Identities=36% Similarity=0.436 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCchh
Q psy16753 105 VLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~~ 142 (156)
.+||||+||++||++++. +|+++| +|||++|+|+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li--~DEpd~gld~~~ 469 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALI--FDEVDVGISGPT 469 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEE--EECCCCCCCHHH
Confidence 479999999999999997 578777 999999999653
No 412
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=3.4e-07 Score=84.69 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=35.6
Q ss_pred ccCcCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 102 VLNVLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 102 ~~~~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+.||+||+| |++||+|++.+|++++ |||||+|+|+..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~--lDEPt~~lD~~~ 1240 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIA--LDEPTTNLDREN 1240 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEE--eeCCcccCCHHH
Confidence 44789999999 9999999999999887 999999999764
No 413
>PRK01156 chromosome segregation protein; Provisional
Probab=98.36 E-value=9.2e-07 Score=79.02 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=34.7
Q ss_pred CccCcCChHHHHHHHHH------HHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 101 SVLNVLSGGERKRVALA------VQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 101 ~~~~~LSgGerqrv~LA------~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+..|||||+++++|| ++++.+|++++ +||||+|+|+..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~li--lDEpt~~lD~~~ 842 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLI--MDEPTAFLDEDR 842 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEE--EeCCCCcCCHHH
Confidence 45789999999999764 88999999877 999999999664
No 414
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.36 E-value=2.4e-07 Score=68.91 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++..++..+..+.....+|+||+|++.+++++ .+|++++ +|||++|+|+....
T Consensus 75 ~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~lll--lDEp~~glD~~~~~ 127 (200)
T cd03280 75 IFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVL--LDELGSGTDPVEGA 127 (200)
T ss_pred EEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEE--EcCCCCCCCHHHHH
Confidence 34455555566777889999999999999884 7899887 99999999987544
No 415
>KOG0066|consensus
Probab=98.35 E-value=2.3e-07 Score=76.29 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..++++++.-+|+++ ..+++...+|||-|.||+|||||...|.+++ |||||+-+|-.+.+
T Consensus 389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM--LDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM--LDEPTNHLDLNAVI 449 (807)
T ss_pred hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee--ecCCccccccceee
Confidence 346778899899975 4578888999999999999999999999777 99999999977654
No 416
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=5.1e-07 Score=70.20 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=33.2
Q ss_pred cCcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCchh
Q psy16753 103 LNVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~~ 142 (156)
..-+|+||||++.+|++++ .+|+++| +|||++++|+..
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~ill--lDEp~a~LD~~~ 227 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLL--LDDVLAELDLGR 227 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEE--EcCcchhcCHHH
Confidence 3458999999999999985 7999887 999999999764
No 417
>PRK03918 chromosome segregation protein; Provisional
Probab=98.27 E-value=6.2e-07 Score=79.81 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=33.4
Q ss_pred cCccCcCChHHHHH------HHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 100 NSVLNVLSGGERKR------VALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~~LSgGerqr------v~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+.++..|||||+++ +++|++++.+|+++| +||||+|+|+.
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~li--lDEp~~~lD~~ 828 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLI--LDEPTPFLDEE 828 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEE--EeCCCcccCHH
Confidence 46778999999995 455567889999887 99999999975
No 418
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.26 E-value=6.4e-07 Score=81.21 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=35.6
Q ss_pred ccCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCch
Q psy16753 99 KNSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 99 ~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~ 141 (156)
.+..+..|||||+++++||++++ .+|+++| +|||++|+|+.
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~--lDE~~~~ld~~ 1127 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCI--LDEVDAPLDDA 1127 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEE--ecCccccccHH
Confidence 35677899999999999999985 6678887 99999999975
No 419
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.23 E-value=2.3e-06 Score=69.98 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=79.3
Q ss_pred HHHHHHhhhhhcC----CCCcceEEEECCEecCcccccceeeEecCCCCC-CCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 10 SGIHLLGQRVVHE----LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLT-VDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~----~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
+++++|+|..... +.|++|.|.+--.. ..+.+|.+... |...|+.|++.-. .. +..
T Consensus 424 tllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s~----------tG-D~~ 484 (593)
T COG2401 424 TLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRSK----------TG-DLN 484 (593)
T ss_pred hHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhhc----------cC-chh
Confidence 5678888876652 66889988642211 23455655332 4455666665310 01 112
Q ss_pred HHHHHHHHcCCCcc--ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKC--KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~--~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+++++.|+.+. .-.+..+||.|||.|+.||.+++..|.+++ .||=.+-+|+.++.
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~--iDEF~AhLD~~TA~ 544 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL--IDEFAAHLDELTAV 544 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE--hhhhhhhcCHHHHH
Confidence 45688999999753 356678999999999999999999999888 99988889987654
No 420
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.09 E-value=1.1e-06 Score=66.61 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHH--hcCCCeeEEecCCC---CCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV--SQDCSRVVKITDSQ---PRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL--~~~p~ill~~~Dep---~~g~~~~~~ 143 (156)
+++++..+++.+. ....+|+|+++++.+++++ +.+|+++| +||| |+++|+.+.
T Consensus 73 ~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvL--LDEp~~gT~~lD~~~~ 130 (222)
T cd03285 73 VDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLII--IDELGRGTSTYDGFGL 130 (222)
T ss_pred cceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEE--EecCcCCCChHHHHHH
Confidence 4566777777643 3678999999999999999 89999887 9999 777887644
No 421
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.07 E-value=2.3e-06 Score=77.85 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=34.6
Q ss_pred cCccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCch
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~ 141 (156)
.+.+..||||||++++||++++. +|+++| +|||++|+|+.
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~--lDE~~~~ld~~ 1112 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYA--FDEVDMFLDGV 1112 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEE--ecccccccCHH
Confidence 34567899999999999999985 678777 99999999976
No 422
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.00 E-value=4.5e-06 Score=77.50 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=34.8
Q ss_pred ccCccCcCChHHHHHHH----HHHH--------HhcCCCeeEEecCCCCCCCCchhh
Q psy16753 99 KNSVLNVLSGGERKRVA----LAVQ--------VSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 99 ~~~~~~~LSgGerqrv~----LA~A--------L~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++.++.|||||||+++ +|++ +..+|++++ |||||+|+|+..+
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lil--LDEp~a~lD~~~~ 1295 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLIL--LDEAFAGVDDNAR 1295 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEE--EeCccccCCHHHH
Confidence 35557899999999997 5644 457999887 9999999998754
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=97.99 E-value=3.5e-06 Score=68.25 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=33.6
Q ss_pred ccCcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCch
Q psy16753 102 VLNVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~ 141 (156)
....+|.||+|++.+|++++ .+|+++| +|||++++|+.
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilL--lDd~~s~LD~~ 316 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILL--LDDVASELDDG 316 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEE--EccchhhhCHH
Confidence 34679999999999999886 6899887 99999999975
No 424
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.97 E-value=3.6e-05 Score=67.31 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=42.8
Q ss_pred HHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 90 LKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 90 l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+-.+||.-. +++...+|||||.||+-||..+-..--=++-+||||+.||++.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqr 517 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQR 517 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChh
Confidence 444566533 4888999999999999999999888776777899999999875
No 425
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=5.6e-06 Score=67.17 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=33.2
Q ss_pred CcCChHHHHHHHHHHHHhc---------CCCeeEEecCCCCCCCCch
Q psy16753 104 NVLSGGERKRVALAVQVSQ---------DCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~---------~p~ill~~~Dep~~g~~~~ 141 (156)
..+|.||+|++.||.+++. +|+++| +|||++++|+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilL--LDD~~seLD~~ 318 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILL--LDDVASELDDQ 318 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEE--EcCchhccCHH
Confidence 3689999999999999999 999888 99999999965
No 426
>KOG2355|consensus
Probab=97.88 E-value=1.4e-05 Score=59.99 Aligned_cols=116 Identities=11% Similarity=0.130 Sum_probs=73.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--------------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--------------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD 74 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--------------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~ 74 (156)
.+++|+|+|.-.. -.|.|...|.+.-.. .|....++-- +..+..++++.+-+ |+..
T Consensus 54 tTlLKiLsGKhmv----~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~---- 123 (291)
T KOG2355|consen 54 TTLLKILSGKHMV----GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG---- 123 (291)
T ss_pred hhhHHHhcCcccc----cCCeEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc----
Confidence 3688888888665 368999999764210 1222222211 11122345564433 3321
Q ss_pred cCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+ .+.++-+++++.+.++ ..=+.+.+|-|||+||.|++.|++.-++++ |||-|--+|+.+.
T Consensus 124 -g----~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~PfkVLL--LDEVTVDLDVlAR 183 (291)
T KOG2355|consen 124 -G----DDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLL--LDEVTVDLDVLAR 183 (291)
T ss_pred -C----CChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccceeEEE--eeeeEeehHHHHH
Confidence 1 1124556778877774 334677899999999999999999999888 9998877776643
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.85 E-value=1e-05 Score=59.53 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
.+++..++..+..++....+|+|++|...++. .+.+|+++| +|||++|+||.....
T Consensus 43 d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~lll--lDEp~~g~d~~~~~~ 98 (185)
T smart00534 43 DRIFTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVL--LDELGRGTSTYDGVA 98 (185)
T ss_pred ceEEEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEE--EecCCCCCCHHHHHH
Confidence 34456677777777788889998887433333 234898887 999999999875433
No 428
>PRK14079 recF recombination protein F; Provisional
Probab=97.85 E-value=1.3e-05 Score=64.68 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=33.2
Q ss_pred CcCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCchh
Q psy16753 104 NVLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~~ 142 (156)
.-+|+||++++.+|..|+ .+|++++ +|||++++|+..
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilL--lDd~~seLD~~~ 307 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLL--VDDFTAELDPRR 307 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEE--EcccchhcCHHH
Confidence 358999999999999999 8899888 999999999653
No 429
>KOG0063|consensus
Probab=97.83 E-value=7.7e-06 Score=67.13 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+....++++.+.|....++-+.+|||||-||.+||++.+.++++++ +|||..-+|+-..+
T Consensus 190 ~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyM--FDEpSsYLDVKQRL 250 (592)
T KOG0063|consen 190 ERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYM--FDEPSSYLDVKQRL 250 (592)
T ss_pred hcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeE--ecCCcccchHHHhh
Confidence 34456778888999888999999999999999999999999999998 99999999966443
No 430
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.82 E-value=1.3e-05 Score=59.80 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=43.3
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753 48 FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV 127 (156)
Q Consensus 48 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il 127 (156)
+++|...+|+.+++.|++.+.... .. ...+++.++++.+++ .+|+++
T Consensus 63 ~~~q~~~l~~~~~~~d~l~~~~s~------~~-~e~~~~~~iL~~~~~--------------------------~~p~ll 109 (199)
T cd03283 63 FELPPVKIFTSIRVSDDLRDGISY------FY-AELRRLKEIVEKAKK--------------------------GEPVLF 109 (199)
T ss_pred cCcccceEEEeccchhccccccCh------HH-HHHHHHHHHHHhccC--------------------------CCCeEE
Confidence 556666678889999998654321 11 122567788887762 789888
Q ss_pred EEecCCCCCCCCchhh
Q psy16753 128 VKITDSQPRGKWPISA 143 (156)
Q Consensus 128 l~~~Dep~~g~~~~~~ 143 (156)
| +|||++|+|+...
T Consensus 110 l--lDEp~~glD~~~~ 123 (199)
T cd03283 110 L--LDEIFKGTNSRER 123 (199)
T ss_pred E--EecccCCCCHHHH
Confidence 7 9999999998754
No 431
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.68 E-value=4.7e-05 Score=49.66 Aligned_cols=42 Identities=21% Similarity=0.126 Sum_probs=27.9
Q ss_pred cCccCcCChHHH-HHHHHHHH------Hhc------CCCeeEEecCCCCCCCCchhh
Q psy16753 100 NSVLNVLSGGER-KRVALAVQ------VSQ------DCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 100 ~~~~~~LSgGer-qrv~LA~A------L~~------~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+....+||||+ ..+.+|.+ +.. .+++++ |||||+++|+...
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~--lDEaF~~lD~~~~ 81 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLF--LDEAFSKLDEENI 81 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEE--EESTTTTCGHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEE--EeCCCCcCCHHHH
Confidence 466789999999 44444442 333 245554 9999999997644
No 432
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.66 E-value=1.8e-05 Score=59.25 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++..++..+..++..+.+|+|++|. ..+.+++.+|++++ +|||++|+||..
T Consensus 72 ~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvl--lDE~~~gt~~~~ 125 (204)
T cd03282 72 FNRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVL--IDELGRGTSSAD 125 (204)
T ss_pred hhheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEE--eccccCCCCHHH
Confidence 4556667777666777888999999975 56677888999777 999999999864
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.57 E-value=5.1e-05 Score=56.66 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEecCCCC-----CCCCchhhhe
Q psy16753 110 ERKRVALAVQVSQDCSRVVKITDSQP-----RGKWPISALF 145 (156)
Q Consensus 110 erqrv~LA~AL~~~p~ill~~~Dep~-----~g~~~~~~~~ 145 (156)
+++++.||++++.+|++++ +|||| +|+||.++..
T Consensus 157 ~~~f~~ia~~l~~~p~~~~--ldEp~~~~~~~~ld~~~~~~ 195 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVF--VGAPALAPEEIQIDPELVAQ 195 (215)
T ss_pred HHHHHHHHHHHhhccccee--cCCcccCCCccccCHHHHHH
Confidence 9999999999999999888 99999 9999986543
No 434
>PRK02224 chromosome segregation protein; Provisional
Probab=97.49 E-value=7.9e-05 Score=66.59 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=30.3
Q ss_pred ccCcCChHHHH------HHHHHHHHhcC-----C-CeeEEecCCCCCCCCch
Q psy16753 102 VLNVLSGGERK------RVALAVQVSQD-----C-SRVVKITDSQPRGKWPI 141 (156)
Q Consensus 102 ~~~~LSgGerq------rv~LA~AL~~~-----p-~ill~~~Dep~~g~~~~ 141 (156)
.+..||||+|+ |++++++++.+ | +++| +||||+|+|+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~i--lDEp~~~lD~~ 827 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLI--LDEPTVFLDSG 827 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceE--ecCCcccCCHH
Confidence 35689999999 88888888863 2 4444 99999999965
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.48 E-value=0.00014 Score=53.98 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=34.8
Q ss_pred cCcCChHHHHHHHHHHHHhcCCCe-eEEecCCCCCCCCch----------------hhheeecccc
Q psy16753 103 LNVLSGGERKRVALAVQVSQDCSR-VVKITDSQPRGKWPI----------------SALFITTASS 151 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL~~~p~i-ll~~~Dep~~g~~~~----------------~~~~~~~~~~ 151 (156)
...+|.|++|.+.++.++...++- -++++|||-++|+|. .|+.+||||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 456799999999999888877742 223499999999874 4677777774
No 436
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.40 E-value=0.00012 Score=54.46 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=36.3
Q ss_pred HHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 91 KELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 91 ~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..++..+........++.+++| +..+.+++.+|+++| +|||++|+||...
T Consensus 77 ~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~lll--lDEp~~gld~~~~ 126 (202)
T cd03243 77 TRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVL--IDELGRGTSTAEG 126 (202)
T ss_pred EEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEE--EecCCCCCCHHHH
Confidence 3344444445556777777765 666678888999887 9999999998644
No 437
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.14 E-value=0.00083 Score=50.29 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCch
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~ 141 (156)
+.+.+.++...+... .||||||..++||.-+ ..+.+++| |||+.++||+.
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~i--lDEvd~~LD~~ 174 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLI--LDEVDAALDEQ 174 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEE--EESTTTTS-HH
T ss_pred ccccccccccccccc------cccccccccccccccccccccccccccc--ccccccccccc
Confidence 445566776666433 8999999999999643 23455555 99999999965
No 438
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.14 E-value=0.00025 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+-.+|-.+...+...++|+|+++++.|++++ .+|.++| +|||++|+||..
T Consensus 375 ~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvL--lDE~~~GtDp~e 424 (782)
T PRK00409 375 FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVL--FDELGAGTDPDE 424 (782)
T ss_pred EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEE--ecCCCCCCCHHH
Confidence 3344444455667789999999999999988 7787776 999999999873
No 439
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.89 E-value=0.0014 Score=51.26 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHD 53 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~ 53 (156)
.|++++|+|.+.+ .+|+|.++|+++... ..+..++++||..
T Consensus 125 ttl~~~l~~~~~~----~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 125 TTLLRDLARILST----GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHhCccCC----CCceEEECCEEeecchhHHHHHHHhccccccc
Confidence 3677788887774 899999999987521 2333456667754
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.84 E-value=0.00099 Score=50.12 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=31.0
Q ss_pred CcCC--hHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 104 NVLS--GGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 104 ~~LS--gGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+| .-+.||+.++++++.++.++| +|||++|+|+.
T Consensus 87 ~~~S~f~~el~~l~~~l~~~~~~slvl--lDE~~~gtd~~ 124 (213)
T cd03281 87 SGQSAFMIDLYQVSKALRLATRRSLVL--IDEFGKGTDTE 124 (213)
T ss_pred hccchHHHHHHHHHHHHHhCCCCcEEE--eccccCCCCHH
Confidence 3445 567899999999999999887 99999999975
No 441
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.63 E-value=0.00075 Score=59.79 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=37.9
Q ss_pred HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++.+......+.++|+|++++..+++++ .+|.++| +|||++|+||...
T Consensus 372 ~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvL--lDE~g~GtD~~eg 420 (771)
T TIGR01069 372 DIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVL--FDELGAGTDPDEG 420 (771)
T ss_pred ecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEE--ecCCCCCCCHHHH
Confidence 33433444566788999999999998876 6788776 9999999998743
No 442
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.0061 Score=55.04 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=31.4
Q ss_pred CccCcCChHHHHHHHHHHH------HhcC--CCeeEEecCCCCCCCCch
Q psy16753 101 SVLNVLSGGERKRVALAVQ------VSQD--CSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 101 ~~~~~LSgGerqrv~LA~A------L~~~--p~ill~~~Dep~~g~~~~ 141 (156)
+.+..|||||+-.++||.+ +..+ .++++ +||||..+|+-
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~--LDEpf~~LD~e 857 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLF--LDEPFGTLDEE 857 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeE--eeCCCCCCCHH
Confidence 5778999999998888765 4456 56665 99999999965
No 443
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.71 E-value=0.038 Score=48.24 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=26.9
Q ss_pred ccCcCChHHHHHHHHHHH--Hh----cCCCeeEEecCCCCCCCCch
Q psy16753 102 VLNVLSGGERKRVALAVQ--VS----QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~A--L~----~~p~ill~~~Dep~~g~~~~ 141 (156)
.+..||+||+|-++||.. |+ .+.+ +| +|||+.-+|+.
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p-~i--iD~p~~~lD~~ 590 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLP-VI--IDTPLGRLDSS 590 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCC-EE--EcCCccccChH
Confidence 346799999999887764 43 1233 33 79999999974
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.53 E-value=0.04 Score=39.78 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=35.0
Q ss_pred HcCCCccccCccCcCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 92 ELGLLKCKNSVLNVLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 92 ~~~L~~~~~~~~~~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
..+.....+..+..+|+|++| +...+.+...+|++++ +|||++.+|
T Consensus 58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lv--iD~~~~~~~ 109 (187)
T cd01124 58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVV--IDSVSGLLL 109 (187)
T ss_pred hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEE--EeCcHHHhh
Confidence 344445567778889999998 5555556778899887 999999988
No 445
>COG4637 Predicted ATPase [General function prediction only]
Probab=94.44 E-value=0.046 Score=43.73 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=37.7
Q ss_pred CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch---------------hhheeecccc
Q psy16753 104 NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI---------------SALFITTASS 151 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~---------------~~~~~~~~~~ 151 (156)
+.||-|+.+-+++|.+|...-.-=++++|||=.+|.|. +|+.|.|||.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~ 331 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSP 331 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCH
Confidence 48999999999999998865333333599999999876 5777777764
No 446
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.90 E-value=0.026 Score=42.49 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=22.8
Q ss_pred cCChHHHHH----HHHHHHH--hcCCCeeEEecCCC---CCCCCch
Q psy16753 105 VLSGGERKR----VALAVQV--SQDCSRVVKITDSQ---PRGKWPI 141 (156)
Q Consensus 105 ~LSgGerqr----v~LA~AL--~~~p~ill~~~Dep---~~g~~~~ 141 (156)
++|.|+.+. ..++.++ +.+|+++| +||| |+++|+.
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~lll--lDEp~~gt~~lD~~ 128 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVL--LDEIGRGTSTYDGL 128 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEE--EecCCCCCChHHHH
Confidence 456665443 3466555 46888777 9999 7777753
No 447
>KOG0933|consensus
Probab=92.16 E-value=0.057 Score=48.70 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=26.1
Q ss_pred cCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCchhhheee
Q psy16753 103 LNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPISALFIT 147 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~~~~~~~ 147 (156)
..+||||||--|+|+.-|+ ..++++| ||| +.++++++
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYI--LDE------VDAALDLS 1120 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYI--LDE------VDAALDLS 1120 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceee--hhh------hHHhhcch
Confidence 4689999999999875332 4556666 999 55555544
No 448
>PRK13695 putative NTPase; Provisional
Probab=91.73 E-value=0.099 Score=37.67 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=30.9
Q ss_pred cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCC--CCCCCC
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDS--QPRGKW 139 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~De--p~~g~~ 139 (156)
.+....+|++++-+..+++..+.+|++++ +|| |+.+++
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~ll--lDE~~~~e~~~ 112 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVII--IDEIGKMELKS 112 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEE--EECCCcchhhh
Confidence 34556799999999999999889999876 999 555554
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.57 E-value=0.21 Score=37.78 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 109 GERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 109 Gerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.|.+++.-....+.+|+++| +|||.+|++|...
T Consensus 95 ~e~~~~~~il~~~~~~sLvL--lDE~~~Gt~~~dg 127 (218)
T cd03286 95 VELSETANILRHATPDSLVI--LDELGRGTSTHDG 127 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEE--EecccCCCCchHH
Confidence 45566655556667888777 9999999998753
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.06 E-value=0.15 Score=34.37 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=35.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMA 69 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~ 69 (156)
||+++|+..+. +|++.++|.++... ...+.+++++|+ . ...|+++|+.+.-
T Consensus 26 sGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--l-f~~ti~~Ni~~~~ 79 (107)
T cd00820 26 IGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--G-LEIRLRLNIFLIT 79 (107)
T ss_pred CCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--c-chhhHHhhceeee
Confidence 45666666644 78999999988542 334556788877 3 3458999998643
No 451
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.37 E-value=0.12 Score=39.84 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.9
Q ss_pred CcCChHH--------HHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753 104 NVLSGGE--------RKRVALAVQVSQDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 104 ~~LSgGe--------rqrv~LA~AL~~~p~ill~~~Dep~~g~~~ 140 (156)
..+|||+ +|++++|+++..++.+.+ + ||..+|+
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~--l--~T~~~d~ 168 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTI--I--ATALVDT 168 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE--e--eeheecC
Confidence 4479999 999999999988999888 4 7777774
No 452
>PF13175 AAA_15: AAA ATPase domain
Probab=89.44 E-value=0.39 Score=38.82 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=27.9
Q ss_pred CccCcCChHHHHHHHHHHHHhc----CC--C----eeEEecCCCCCCCCch
Q psy16753 101 SVLNVLSGGERKRVALAVQVSQ----DC--S----RVVKITDSQPRGKWPI 141 (156)
Q Consensus 101 ~~~~~LSgGerqrv~LA~AL~~----~p--~----ill~~~Dep~~g~~~~ 141 (156)
-++..+|.|.++.+.++..+.. .. . ++ ++|||=.-|+|.
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~il--lidEPE~~LHp~ 385 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNIL--LIDEPELHLHPQ 385 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEE--EEeCccccCCHH
Confidence 3567899999988888765421 11 1 44 499999999876
No 453
>PF13166 AAA_13: AAA domain
Probab=88.42 E-value=0.76 Score=40.37 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=28.6
Q ss_pred ccCcCChHHHHHHHHHH--HHhc-------CCCeeEEecCCCCCCCCch
Q psy16753 102 VLNVLSGGERKRVALAV--QVSQ-------DCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~--AL~~-------~p~ill~~~Dep~~g~~~~ 141 (156)
....||-|||.-+++|- |.+. +..++ ++|.|+++||-.
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~ii--ViDDPISSLD~~ 543 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKII--VIDDPISSLDHN 543 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceE--EECCCCCCCCHH
Confidence 35689999999999994 4444 33444 599999999943
No 454
>KOG0018|consensus
Probab=87.39 E-value=0.41 Score=43.67 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=28.0
Q ss_pred ccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCc
Q psy16753 102 VLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~ 140 (156)
+..+||||||--.+||.-++. .+++.+ |||=.++||-
T Consensus 1048 ~m~~LSGGEKTvAaLALLFaihsy~PaPFfv--lDEiDAALDn 1088 (1141)
T KOG0018|consen 1048 PMDNLSGGEKTVAALALLFAIHSYKPAPFFV--LDEIDAALDN 1088 (1141)
T ss_pred chhhcCccHHHHHHHHHHHHhccCCCCCcee--hhhHHHHhhh
Confidence 346899999999999986664 466666 9996666653
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=86.27 E-value=0.98 Score=34.23 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 110 ERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 110 erqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
|.+++.-+..-+.++.++| +|||.+|.++.
T Consensus 97 e~~~~~~il~~~~~~sLvl--lDE~~~gT~~~ 126 (222)
T cd03287 97 ELSETSHILSNCTSRSLVI--LDELGRGTSTH 126 (222)
T ss_pred HHHHHHHHHHhCCCCeEEE--EccCCCCCChh
Confidence 5555555555566777666 99999999755
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=82.31 E-value=0.69 Score=35.05 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=11.8
Q ss_pred HHhcCCCeeEEecCCCCCC
Q psy16753 119 QVSQDCSRVVKITDSQPRG 137 (156)
Q Consensus 119 AL~~~p~ill~~~Dep~~g 137 (156)
+...+|+++| +| |+.+
T Consensus 107 ~~~~~~~lvv--iD-pl~~ 122 (239)
T cd01125 107 LLIRRIDLVV--ID-PLVS 122 (239)
T ss_pred HHhcCCCEEE--EC-ChHH
Confidence 3467899887 99 7754
No 457
>KOG0964|consensus
Probab=82.24 E-value=0.4 Score=43.47 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=31.2
Q ss_pred cCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCchh
Q psy16753 103 LNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+.+||||||--|+||.-+ +..++++| +||=.++||+..
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYl--fDEIDAaLDaQy 1136 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYL--FDEIDAALDAQY 1136 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhh--HhHHhhhccHHH
Confidence 348999999999998644 56677887 999999999763
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=77.12 E-value=2.1 Score=35.77 Aligned_cols=40 Identities=15% Similarity=-0.104 Sum_probs=30.9
Q ss_pred ccCcCChHHHHHHHHHHHHh-------cCCCeeEEecCCCCCCCCchhh
Q psy16753 102 VLNVLSGGERKRVALAVQVS-------QDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~-------~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+-|.|+|+|+..+.+.+ .++- ++++|++|+..|+...
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~V--LlilDslTr~a~A~re 264 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNV--LLMMDSVTRFADARRS 264 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcE--EEEecchHHHHHHHHH
Confidence 34688999999999998766 5543 3369999999998643
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=75.97 E-value=9.6 Score=27.64 Aligned_cols=58 Identities=9% Similarity=-0.017 Sum_probs=35.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC--CCCCCCCHHHHHHHHHHh
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD--LTVDTLTVHEHMTLMARL 71 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~--~~~~~ltv~e~l~~~~~~ 71 (156)
|++++|+|++. ++.|.|.+.+..-.....+..+++.++.. ...+..+..+.+....+.
T Consensus 40 Tll~aL~~~i~----~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~ 99 (186)
T cd01130 40 TLLNALLAFIP----PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRM 99 (186)
T ss_pred HHHHHHHhhcC----CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhcc
Confidence 56788888876 47899999775322222233455555443 345667888887766544
No 460
>COG3910 Predicted ATPase [General function prediction only]
Probab=72.73 E-value=3.5 Score=30.97 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=34.2
Q ss_pred cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 98 CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 98 ~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
.........|.||-=---+.+.+-.+- ++| ||||-+||.|..|+.
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~~~G-iYi--LDEPEa~LSp~RQle 166 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFNGQG-IYI--LDEPEAALSPSRQLE 166 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhccCc-eEE--ecCccccCCHHHHHH
Confidence 345567789999987777777777665 666 999999999886543
No 461
>KOG0996|consensus
Probab=72.27 E-value=2.3 Score=39.46 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=27.9
Q ss_pred cCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCC
Q psy16753 103 LNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~ 139 (156)
+.+||||||---+||..++ ...++++ +||=.++||
T Consensus 1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYV--MDEIDAALD 1231 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYV--MDEIDAALD 1231 (1293)
T ss_pred cccCCcchhHHHHHHHHHHHHccCCCCcee--hhhHHHhhc
Confidence 5789999999998887655 3566777 999777776
No 462
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.15 E-value=3.2 Score=38.97 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=29.0
Q ss_pred cCcCChHHHHHHHHHHHH----hcCCCeeEEecCCCCCCCCch
Q psy16753 103 LNVLSGGERKRVALAVQV----SQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL----~~~p~ill~~~Dep~~g~~~~ 141 (156)
+..||||||--.+||.-+ +..+++++ |||=-++||..
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~v--LDEVDAaLD~~ 1104 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYV--LDEVDAALDDA 1104 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeee--eccchhhccHH
Confidence 456999999999998743 35566665 99999999854
No 463
>KOG0962|consensus
Probab=72.07 E-value=3 Score=39.25 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.5
Q ss_pred cCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 105 VLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 105 ~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
-.|.||+- |+++|-+++.++.+|= |||||..+|
T Consensus 1183 RcSAGQKvLAsliIRLALAEtf~snCgvLA--LDEPTTNLD 1221 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLA--LDEPTTNLD 1221 (1294)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhcccccc--ccCCccccC
Confidence 36888875 6777888999999765 999999998
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=69.50 E-value=14 Score=29.92 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCC
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 57 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~ 57 (156)
++++.|+|...+ ..|+|.+++...........+++++|...+++
T Consensus 210 tLin~L~g~~~~----~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 210 TLVNALLGEEVQ----KTGAVREDDSKGRHTTTHRELHPLPSGGLLID 253 (356)
T ss_pred HHHHHHHHhccc----ceeeEEECCCCCcchhhhccEEEecCCCeecC
Confidence 677888887774 79999998754322222345778887765554
No 465
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=69.23 E-value=3.5 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=21.1
Q ss_pred cCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCC
Q psy16753 105 VLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGK 138 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~ 138 (156)
.+|+++.++..+.+.+. .+|++++ +|||++++
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lV--IDe~t~~l 130 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVII--IDSLSSLI 130 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEE--EECccHHh
Confidence 35666555544444332 3688777 99999998
No 466
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.30 E-value=8 Score=33.43 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=25.7
Q ss_pred CcCChHHHHHHHHHH--HHhcC--CCeeEEecCCCCCCCC
Q psy16753 104 NVLSGGERKRVALAV--QVSQD--CSRVVKITDSQPRGKW 139 (156)
Q Consensus 104 ~~LSgGerqrv~LA~--AL~~~--p~ill~~~Dep~~g~~ 139 (156)
+.-||||--|++||. +++.. .+.+| +||=..|+-
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlI--FDEVD~GIs 467 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLI--FDEVDTGIS 467 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEE--EecccCCCC
Confidence 468999999999997 34444 34454 999888884
No 467
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=63.62 E-value=2.6 Score=38.06 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=15.8
Q ss_pred hcCCCeeEEecCCCCCCC-Cch
Q psy16753 121 SQDCSRVVKITDSQPRGK-WPI 141 (156)
Q Consensus 121 ~~~p~ill~~~Dep~~g~-~~~ 141 (156)
..+|++++ +|||..++ ||.
T Consensus 650 ~~~p~ill--lDE~~~~L~d~~ 669 (818)
T PRK13830 650 TGAPSLII--LDEAWLMLGHPV 669 (818)
T ss_pred CCCCcEEE--EECchhhcCCHH
Confidence 57888777 99999999 555
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=62.83 E-value=4.4 Score=36.82 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=20.3
Q ss_pred HHHHHhcCCCeeEEecCCCCCCC-Cchh
Q psy16753 116 LAVQVSQDCSRVVKITDSQPRGK-WPIS 142 (156)
Q Consensus 116 LA~AL~~~p~ill~~~Dep~~g~-~~~~ 142 (156)
|++++..+|++++ +|||..++ ||..
T Consensus 680 i~~~l~~~p~ill--lDE~w~~L~d~~~ 705 (852)
T PRK13891 680 IERALKGQPAVII--LDEAWLMLGHPAF 705 (852)
T ss_pred HHHHhcCCCCEEE--EeCchhhcCCHHH
Confidence 5667889999887 99999999 5553
No 469
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=61.31 E-value=6.6 Score=29.49 Aligned_cols=33 Identities=15% Similarity=-0.031 Sum_probs=26.4
Q ss_pred cCChHHHHHHHHHHHHhc--CCCeeEEecCCCCCCCC
Q psy16753 105 VLSGGERKRVALAVQVSQ--DCSRVVKITDSQPRGKW 139 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL~~--~p~ill~~~Dep~~g~~ 139 (156)
..|.++.+.+..+...+. +|++++ +|||++.++
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iv--iDs~t~~~~ 134 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVII--IDSLTIFAT 134 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEE--EecHHHHHh
Confidence 457788999999988887 888776 999996544
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=58.45 E-value=4 Score=29.75 Aligned_cols=51 Identities=8% Similarity=-0.075 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCc
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~ 140 (156)
...+.++.+......+.+..+.|.|++++..+ .+.+++++| +|.|..+.++
T Consensus 63 ~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI--~eg~~~~~~~ 113 (198)
T cd02023 63 LLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVII--LEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEE--Eechhhccch
Confidence 34455666666555677788999998876655 467788776 9999988864
No 471
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=45.87 E-value=27 Score=29.39 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=30.5
Q ss_pred CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 104 NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
.+=||-+-|-..|..|+-..+++|| +||.|+..+
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LL--iDEDtsATN 354 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLL--IDEDTSATN 354 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEE--EcCcccchh
Confidence 4679999999999999999999888 999888764
No 472
>PRK06315 type III secretion system ATPase; Provisional
Probab=45.40 E-value=52 Score=27.73 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=48.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECC---EecCcc---cc---cceeeEe-----cCCCCC--CCCCCHHHHHHHHHHhhc
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNG---LEVEKN---LM---VKVSGFV-----PQHDLT--VDTLTVHEHMTLMARLKM 73 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G---~~i~~~---~~---~~~ig~v-----~Q~~~~--~~~ltv~e~l~~~~~~~~ 73 (156)
+++++|+|+... .+.|.|.+.| .++... .+ ....+++ +|++.. .+.. +...+....+.+.
T Consensus 179 tLl~~I~~~~~~---~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~-va~~IAE~~r~~g 254 (442)
T PRK06315 179 SLLGMIARNAEE---ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAY-VGTAIAEYFRDQG 254 (442)
T ss_pred hHHHHhhccccc---CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHH-HHHHHHHHHHHcC
Confidence 456667776632 2346777744 444211 11 1224444 777543 1222 3333333333331
Q ss_pred ccCCcHHHHHHHHHHHHHHcCCC-----ccccCccCcCC
Q psy16753 74 DRNLHHVERARTVDALLKELGLL-----KCKNSVLNVLS 107 (156)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~L~-----~~~~~~~~~LS 107 (156)
...+...+...++.++++.+++. .....+++.+|
T Consensus 255 ~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 255 KTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 11112345667888999999993 35577777777
No 473
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=44.07 E-value=34 Score=31.27 Aligned_cols=38 Identities=18% Similarity=0.041 Sum_probs=27.7
Q ss_pred cCccCcCChHHHHHHHHHHHHhc--CCCeeEEecCCCCCCCC
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQ--DCSRVVKITDSQPRGKW 139 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~--~p~ill~~~Dep~~g~~ 139 (156)
|....+.|.=+.....++..+-. ++.++| +|||-+|.+
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvl--lDE~GrGTs 700 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVL--LDEIGRGTS 700 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEE--EecCCCCCC
Confidence 34456788888888888887765 666665 999955554
No 474
>KOG0250|consensus
Probab=43.17 E-value=9.9 Score=35.21 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=24.5
Q ss_pred cCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 103 LNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
++.||||||--..+|..|+.=+ +++-|++-||
T Consensus 987 ~~gLSGGERSFsTv~lllsLW~-----~me~Pfr~LD 1018 (1074)
T KOG0250|consen 987 TRGLSGGERSFSTVCLLLSLWE-----VMECPFRALD 1018 (1074)
T ss_pred ccccCcccchHHHHHHHHHHhH-----hhcCchhhhh
Confidence 4689999999999999887543 2566766665
No 475
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=42.73 E-value=59 Score=20.81 Aligned_cols=39 Identities=21% Similarity=0.004 Sum_probs=28.1
Q ss_pred ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 102 VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.....++++..+..++++-..++.+++ +||+..-.+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~vii--iDei~~~~~~~~ 95 (148)
T smart00382 57 KKASGSGELRLRLALALARKLKPDVLI--LDEITSLLDAEQ 95 (148)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHH
Confidence 344567788888778888777777666 999887776543
No 476
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.45 E-value=31 Score=31.10 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=26.1
Q ss_pred CcCChHHHHHHH---HHHHHh--------cCCCeeEEecCCCCCCCCchhh
Q psy16753 104 NVLSGGERKRVA---LAVQVS--------QDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 104 ~~LSgGerqrv~---LA~AL~--------~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+||||+++++ ||.+|. +.|-+=-.|+||-|.-=++.++
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a 1039 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVA 1039 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHH
Confidence 469999999986 344432 3343333469999877666544
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=41.58 E-value=24 Score=25.92 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCeeEEecCCCCC
Q psy16753 115 ALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 115 ~LA~AL~~~p~ill~~~Dep~~ 136 (156)
.+++++..+|++++ +||+..
T Consensus 66 ~i~~aLr~~pd~ii--~gEird 85 (198)
T cd01131 66 ALKAALRQDPDVIL--VGEMRD 85 (198)
T ss_pred HHHHHhcCCcCEEE--EcCCCC
Confidence 47889999999887 999864
No 478
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=40.95 E-value=20 Score=29.32 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=28.4
Q ss_pred CcCChHHHHHHHHHHHH---------hcCCCeeEEecCCCCCCCCch
Q psy16753 104 NVLSGGERKRVALAVQV---------SQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL---------~~~p~ill~~~Dep~~g~~~~ 141 (156)
.-+|.||++-+.+|.=| ....+|++ ||+=++-||+.
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILL--LDDv~seLD~~ 318 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILL--LDDVASELDDG 318 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEE--echhhHhhCHH
Confidence 45999999999988644 45667776 99999999854
No 479
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.76 E-value=19 Score=34.98 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=26.8
Q ss_pred cCcCChHHHHHHHHHHHHh--------cC----CCee---EEecCCCCCCCCchhh
Q psy16753 103 LNVLSGGERKRVALAVQVS--------QD----CSRV---VKITDSQPRGKWPISA 143 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL~--------~~----p~il---l~~~Dep~~g~~~~~~ 143 (156)
.+.+|||||..++.+.-++ .. |+.. ++.|||- +++|..++
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~ 1417 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSI 1417 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHH
Confidence 4789999999888776554 22 2221 1248998 99887654
No 480
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.23 E-value=39 Score=29.53 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=29.8
Q ss_pred cCccCc-CChHHHHHHHHHHH---HhcCCCee---EEecCCCCCCCCch
Q psy16753 100 NSVLNV-LSGGERKRVALAVQ---VSQDCSRV---VKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~~-LSgGerqrv~LA~A---L~~~p~il---l~~~Dep~~g~~~~ 141 (156)
+..+++ ||-|++.-++++-- |--+|+++ ++++|.|+.++|..
T Consensus 523 g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn 571 (758)
T COG4694 523 GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSN 571 (758)
T ss_pred CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchh
Confidence 445566 99999999987743 44455543 22499999999965
No 481
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=34.46 E-value=38 Score=29.73 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.+.++.+++....+..+.++||| ++ ++|| +..+|+..+-
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL--~LDE-i~~Ld~~~Q~ 283 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGG----------------VL--FIDE-IGELDPLLQN 283 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCC----------------eE--EEec-cccCCHHHHH
Confidence 3455678888877778888899999 34 5999 7899876543
No 482
>COG1106 Predicted ATPases [General function prediction only]
Probab=33.36 E-value=33 Score=28.19 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.0
Q ss_pred CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 101 SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 101 ~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.+....|-|-++.+-+.-++...-+-.+ .+||+-+|++|.
T Consensus 247 ~~~~~~~~G~kk~~~i~~~l~~~~~k~l-~iDEie~~lHp~ 286 (371)
T COG1106 247 IPLNEEGEGFKKALIIVPLLSDLNDKVL-LIDEIENGLHPS 286 (371)
T ss_pred eeeeeecchHHHHHHHHhhhhhcCCceE-EeehhhhccCHH
Confidence 3345789999999999988776665232 589999999865
No 483
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=32.80 E-value=36 Score=22.96 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=22.3
Q ss_pred cCChHHHHHHHHHHHHhcCCCeeEEecCCCCC
Q psy16753 105 VLSGGERKRVALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~ 136 (156)
..+.+..++...+++...+|+++| +||+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lv--iDe~~~ 96 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLII--LDELTR 96 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEE--EEcHHH
Confidence 344555667778888888888776 999884
No 484
>PRK13702 replication protein; Provisional
Probab=31.40 E-value=44 Score=21.46 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=18.5
Q ss_pred cCcCChHHHHHHHHHH--HHhcCCCeeE
Q psy16753 103 LNVLSGGERKRVALAV--QVSQDCSRVV 128 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~--AL~~~p~ill 128 (156)
..=||..||||..+|| +-...-+++|
T Consensus 21 G~Pls~aErQr~svaRKr~THkei~vfi 48 (85)
T PRK13702 21 GNPLSAAEKQRASVARKRATHKEIKVFI 48 (85)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhheee
Confidence 4459999999999998 3444444444
No 485
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=30.97 E-value=1.4e+02 Score=21.07 Aligned_cols=51 Identities=20% Similarity=0.071 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCC-ccccCccCcCChHHHHHHH--HHHHHhc-CCCeeEEecCCCCCCCCch
Q psy16753 85 TVDALLKELGLL-KCKNSVLNVLSGGERKRVA--LAVQVSQ-DCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 85 ~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~--LA~AL~~-~p~ill~~~Dep~~g~~~~ 141 (156)
.+.+.++..++. -....++..+|+|+++++. ++..+-. ++++ .|++++|+.
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~------~~~Sa~~~~ 180 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV------ILFSSLKKQ 180 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce------EEEEcCCCC
Confidence 344556666654 2234466678999999877 5555543 2322 377777764
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=29.28 E-value=1.3e+02 Score=25.72 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=44.7
Q ss_pred eeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHH-HHHHHHHHhcC
Q psy16753 45 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERK-RVALAVQVSQD 123 (156)
Q Consensus 45 ~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerq-rv~LA~AL~~~ 123 (156)
.++++.++. ...++.|++.++...... .........+...+..++.+.....+.+...+++. .+.-..+++.+
T Consensus 288 kV~LI~~Dt---~RigA~EQLr~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~ 361 (484)
T PRK06995 288 KVALLTTDS---YRIGGHEQLRIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHG 361 (484)
T ss_pred eEEEEeCCc---cchhHHHHHHHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhc
Confidence 578888775 346889999887655321 11111112223334456654444445553333322 12333344443
Q ss_pred C---CeeEEecCCCCCCCCc
Q psy16753 124 C---SRVVKITDSQPRGKWP 140 (156)
Q Consensus 124 p---~ill~~~Dep~~g~~~ 140 (156)
+ --.+|++|.++.+.+.
T Consensus 362 ~~~p~e~~LVLdAt~~~~~l 381 (484)
T PRK06995 362 AGAPVKRLLLLNATSHGDTL 381 (484)
T ss_pred cCCCCeeEEEEeCCCcHHHH
Confidence 3 1134468998877553
No 487
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=27.84 E-value=30 Score=27.72 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=25.2
Q ss_pred HhcCCCeeEEecCCCCCCCCch----------------hhheeecccc
Q psy16753 120 VSQDCSRVVKITDSQPRGKWPI----------------SALFITTASS 151 (156)
Q Consensus 120 L~~~p~ill~~~Dep~~g~~~~----------------~~~~~~~~~~ 151 (156)
+..+++.+| |..+|-+-++|. .++.++|||+
T Consensus 256 li~K~~~lI-IIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSd 302 (374)
T COG4938 256 LIVKKKYLI-IIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSD 302 (374)
T ss_pred eeecCCcEE-EEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechH
Confidence 778888777 789999999986 4667788775
No 488
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=27.78 E-value=1.3 Score=37.45 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHH--HHHhcCCCe
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALA--VQVSQDCSR 126 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA--~AL~~~p~i 126 (156)
++.+++.+..++....+|+|++||+.|+ .++...++.
T Consensus 100 ~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~ 138 (484)
T TIGR02655 100 VGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDA 138 (484)
T ss_pred cccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCc
Confidence 3445555666777778888999988888 555555443
No 489
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=26.95 E-value=73 Score=21.99 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
+-..+++.+|+.-..=+++.-|-| ..+.++-.+.+++| +.|++..+-+
T Consensus 4 rrd~~LqeMGItqW~Lr~P~~L~g------~~~i~lp~~~rLli-Vs~~~p~~~~ 51 (128)
T PF03603_consen 4 RRDWLLQEMGITQWQLRRPEVLQG------EIAISLPESCRLLI-VSDELPQLDD 51 (128)
T ss_dssp HHHHHHHHCT--EEEES-GGGTS--------S-----TT--EEE-E-SS---TTS
T ss_pred hHHHHHHHcCCCeEEeCCccccCC------CccccCcccceEEE-EeCCCCCccC
Confidence 345679999998877778877777 78888888888776 7788877755
No 490
>COG1715 Mrr Restriction endonuclease [Defense mechanisms]
Probab=25.86 E-value=86 Score=25.06 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCccCcCChHH----HHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 80 VERARTVDALLKELGLLKCKNSVLNVLSGGE----RKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGe----rqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
....+....+.+.|+|++. ++..-+..|. +-|+.+|..-+..+ -+ +|+|.+|.|+++...
T Consensus 23 ~~v~e~~~a~a~~f~l~~~--er~evl~sGrq~~~~nRigwa~~~l~ra--Gl--~~s~~RG~~~iT~~g 86 (308)
T COG1715 23 RSVREKIHAAAEEFGLDEQ--ERAEVLPSGRQQTYANRIGWALTNLKRA--GL--LDSPLRGYVQITDLG 86 (308)
T ss_pred hhHHHHHHHHHHHhCCChh--hhheecccchhHHHHhhhhHHhhhhHHh--hh--cccccCCceeecccc
Confidence 4556678888999999743 4455566673 34677887777665 34 799999999876544
No 491
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=24.59 E-value=64 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=22.0
Q ss_pred cCcCChHHHHHHHHHHHH--hcCCCeeEEecCCCCCCCCchhhh
Q psy16753 103 LNVLSGGERKRVALAVQV--SQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 103 ~~~LSgGerqrv~LA~AL--~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..++|.=+..-..++..+ +.+ +-+| ++||..+|.++....
T Consensus 100 ~~~~S~F~~E~~~~~~il~~~~~-~sLv-liDE~g~gT~~~eg~ 141 (235)
T PF00488_consen 100 ESGLSTFMAEMKRLSSILRNATE-KSLV-LIDELGRGTNPEEGI 141 (235)
T ss_dssp TTSSSHHHHHHHHHHHHHHH--T-TEEE-EEESTTTTSSHHHHH
T ss_pred ccccccHHHhHHHHHhhhhhccc-ceee-ecccccCCCChhHHH
Confidence 344555444444444444 333 3333 589999999877443
No 492
>PHA02608 67 prohead core protein; Provisional
Probab=22.05 E-value=80 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHhcC
Q psy16753 107 SGGERKRVALAVQVSQD 123 (156)
Q Consensus 107 SgGerqrv~LA~AL~~~ 123 (156)
+-=+.+|+.||++++-.
T Consensus 30 ~li~e~k~eIA~sv~iE 46 (80)
T PHA02608 30 ALIEEEKVEIARSVMIE 46 (80)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34467899999998743
No 493
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.90 E-value=1.2e+02 Score=23.63 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=34.3
Q ss_pred CccCcCChH-HHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 101 SVLNVLSGG-ERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 101 ~~~~~LSgG-erqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
-.+.-+|-| .+-.-.+-.||+..++-.+++.|+-+.|.|+.++
T Consensus 56 ~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~t 99 (260)
T COG2086 56 GEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGADPLAT 99 (260)
T ss_pred ceEEEEEecchhhHHHHHHHHhcCCCeEEEEecccccCccHHHH
Confidence 345668888 6666777778999999999889999999997754
No 494
>COG3050 HolD DNA polymerase III, psi subunit [DNA replication, recombination, and repair]
Probab=21.74 E-value=57 Score=22.51 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=37.4
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
-.+..+|+....-+++.-|-| .++.++-.+.++++ +.+++..+-||.
T Consensus 6 ~lLqqmgItQW~L~rP~~LqG------~i~i~l~e~iRLii-VA~~~p~~~~pL 52 (133)
T COG3050 6 LLLQQMGITQWELRRPERLQG------EIAISLPEDIRLII-VANQLPALTDPL 52 (133)
T ss_pred HHHHHcCchheeecCchhhcC------ceeeccccceeEEE-EccCCccccChH
Confidence 457888998777777777777 78889999998766 788888886765
No 495
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=21.05 E-value=48 Score=30.03 Aligned_cols=18 Identities=6% Similarity=-0.291 Sum_probs=14.6
Q ss_pred HhcCCCeeEEecCCCCCCCC
Q psy16753 120 VSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 120 L~~~p~ill~~~Dep~~g~~ 139 (156)
+-.+|++++ +|||..++|
T Consensus 632 ~~~~p~ill--lDE~~~~Ld 649 (811)
T PRK13873 632 FDGRPTLLI--LDEAWLFLD 649 (811)
T ss_pred hcCCCcEEE--EcChhhhCC
Confidence 345788776 999999998
No 496
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=21.02 E-value=1.1e+02 Score=18.45 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHhhhhhc
Q psy16753 5 YFLLFSGIHLLGQRVVH 21 (156)
Q Consensus 5 ~~~~~~~l~~l~g~~~~ 21 (156)
.|.++|.++.|+.+.++
T Consensus 49 ~~~~y~ffs~Lt~l~~~ 65 (66)
T PF11100_consen 49 LFILYCFFSALTKLLQH 65 (66)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 47889999999998875
No 497
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=20.98 E-value=92 Score=26.78 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhcCCCCcce-EEEECCEecCc
Q psy16753 10 SGIHLLGQRVVHELSDVDG-QILLNGLEVEK 39 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G-~I~~~G~~i~~ 39 (156)
||+++|.. .....|++| +|.++|.++..
T Consensus 43 sGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 43 DGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred CCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 56666665 233446677 89999999864
No 498
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=20.48 E-value=1.5e+02 Score=24.94 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhcCCCCcc---eEEEECCEecCcc---------cccceeeEecCCCCCCCCCCHHHHHHHHHHh
Q psy16753 10 SGIHLLGQRVVHELSDVD---GQILLNGLEVEKN---------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~---G~I~~~G~~i~~~---------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~ 71 (156)
+++++|+|...+ +. |.|-.+|.++... ..+..+++++|+...+..+++.++..+.+.+
T Consensus 170 TLl~~I~g~~~~----dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 170 VLLGMITRYTQA----DVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred HHHHHHhcccCC----CeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 567778887664 33 4444444443210 1234578999999888899999988766554
Done!