Query psy16753
Match_columns 156
No_of_seqs 119 out of 1773
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 21:08:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4E-30 1.4E-34 205.5 13.4 127 9-144 68-200 (366)
2 3tif_A Uncharacterized ABC tra 100.0 7.4E-30 2.5E-34 193.4 13.6 130 9-144 45-182 (235)
3 3rlf_A Maltose/maltodextrin im 100.0 6.8E-30 2.3E-34 205.3 13.9 124 9-141 43-167 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 4.1E-30 1.4E-34 205.2 11.3 126 9-143 44-174 (359)
5 1z47_A CYSA, putative ABC-tran 100.0 1.8E-29 6.3E-34 201.3 14.1 125 9-142 55-180 (355)
6 2pcj_A ABC transporter, lipopr 100.0 2.7E-29 9.1E-34 189.1 13.1 126 9-143 44-176 (224)
7 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-29 8E-34 200.8 12.8 124 10-142 46-175 (353)
8 2it1_A 362AA long hypothetical 100.0 3E-29 1E-33 200.6 13.2 124 9-141 43-167 (362)
9 1g29_1 MALK, maltose transport 100.0 4E-29 1.4E-33 200.6 13.9 125 9-142 43-174 (372)
10 2olj_A Amino acid ABC transpor 100.0 4.7E-29 1.6E-33 191.9 12.8 127 9-144 64-196 (263)
11 1vpl_A ABC transporter, ATP-bi 100.0 6E-29 2.1E-33 190.7 13.1 126 9-143 55-182 (256)
12 1b0u_A Histidine permease; ABC 100.0 4.8E-29 1.6E-33 191.7 12.6 126 9-143 46-189 (262)
13 3gfo_A Cobalt import ATP-bindi 100.0 3.7E-29 1.3E-33 193.6 12.0 127 9-144 48-180 (275)
14 2yyz_A Sugar ABC transporter, 100.0 2.4E-29 8.2E-34 201.0 11.1 124 9-141 43-167 (359)
15 2onk_A Molybdate/tungstate ABC 100.0 3.6E-29 1.2E-33 190.2 10.3 124 9-143 38-162 (240)
16 1v43_A Sugar-binding transport 100.0 4E-29 1.4E-33 200.5 10.1 124 9-141 51-175 (372)
17 3d31_A Sulfate/molybdate ABC t 100.0 9.7E-29 3.3E-33 196.8 11.8 121 9-141 40-161 (348)
18 1sgw_A Putative ABC transporte 100.0 1.9E-28 6.7E-33 183.4 11.3 121 9-143 49-169 (214)
19 1g6h_A High-affinity branched- 100.0 9.9E-29 3.4E-33 189.4 9.4 129 9-143 47-189 (257)
20 4g1u_C Hemin import ATP-bindin 100.0 3.2E-28 1.1E-32 187.6 10.2 124 9-143 51-183 (266)
21 1ji0_A ABC transporter; ATP bi 99.9 4.3E-28 1.5E-32 184.2 10.1 125 9-143 46-175 (240)
22 2yz2_A Putative ABC transporte 99.9 5.6E-28 1.9E-32 186.1 8.8 125 9-143 47-174 (266)
23 2d2e_A SUFC protein; ABC-ATPas 99.9 2.5E-27 8.5E-32 181.0 10.7 129 9-143 43-179 (250)
24 2ihy_A ABC transporter, ATP-bi 99.9 1.8E-27 6.2E-32 184.5 8.2 128 9-142 61-196 (279)
25 2qi9_C Vitamin B12 import ATP- 99.9 6E-27 2E-31 178.9 9.0 121 9-144 40-170 (249)
26 2ixe_A Antigen peptide transpo 99.9 3.5E-27 1.2E-31 182.2 7.0 129 9-144 59-193 (271)
27 2nq2_C Hypothetical ABC transp 99.9 3.4E-26 1.2E-30 175.0 11.6 120 9-144 45-165 (253)
28 2pjz_A Hypothetical protein ST 99.9 1.9E-26 6.5E-31 177.4 10.1 119 9-143 44-164 (263)
29 2zu0_C Probable ATP-dependent 99.9 8.5E-26 2.9E-30 174.0 13.4 131 9-143 60-200 (267)
30 2ff7_A Alpha-hemolysin translo 99.9 2.4E-26 8.3E-31 175.3 7.7 119 9-143 49-181 (247)
31 3nh6_A ATP-binding cassette SU 99.9 5.2E-26 1.8E-30 178.3 8.0 119 10-144 95-227 (306)
32 1mv5_A LMRA, multidrug resista 99.9 4E-26 1.4E-30 173.6 6.3 120 9-143 42-175 (243)
33 2ghi_A Transport protein; mult 99.9 9.5E-25 3.2E-29 167.6 7.9 118 9-143 60-191 (260)
34 3gd7_A Fusion complex of cysti 99.9 3.2E-25 1.1E-29 178.8 3.6 115 9-141 61-189 (390)
35 2pze_A Cystic fibrosis transme 99.9 5.5E-24 1.9E-28 160.5 8.9 110 10-146 49-169 (229)
36 3b5x_A Lipid A export ATP-bind 99.9 4.8E-24 1.6E-28 179.6 7.8 120 10-144 384-517 (582)
37 2yl4_A ATP-binding cassette SU 99.9 6E-24 2.1E-28 179.4 8.0 122 10-144 385-520 (595)
38 3b60_A Lipid A export ATP-bind 99.9 5.1E-24 1.7E-28 179.5 7.5 119 10-143 384-516 (582)
39 4a82_A Cystic fibrosis transme 99.9 5.2E-24 1.8E-28 179.3 5.5 122 10-143 378-513 (578)
40 3qf4_A ABC transporter, ATP-bi 99.9 3.3E-24 1.1E-28 180.9 4.3 123 10-144 384-516 (587)
41 2cbz_A Multidrug resistance-as 99.9 1.4E-23 4.9E-28 159.0 7.2 113 9-145 45-165 (237)
42 3qf4_B Uncharacterized ABC tra 99.9 8.8E-24 3E-28 178.6 5.7 119 10-144 396-528 (598)
43 2bbs_A Cystic fibrosis transme 99.9 1.2E-22 4E-27 158.2 8.1 110 9-146 78-198 (290)
44 3bk7_A ABC transporter ATP-bin 99.9 9.2E-22 3.1E-26 166.4 8.9 113 9-144 396-508 (607)
45 3g5u_A MCG1178, multidrug resi 99.8 9.2E-22 3.2E-26 177.8 7.7 122 10-143 431-562 (1284)
46 1yqt_A RNAse L inhibitor; ATP- 99.8 1.5E-21 5E-26 163.3 7.3 113 9-144 326-438 (538)
47 4f4c_A Multidrug resistance pr 99.8 4.3E-22 1.5E-26 180.4 4.3 120 10-143 1120-1253(1321)
48 3ozx_A RNAse L inhibitor; ATP 99.8 1.1E-21 3.8E-26 164.0 6.4 114 9-143 308-421 (538)
49 4f4c_A Multidrug resistance pr 99.8 2E-21 6.9E-26 176.0 7.2 121 10-142 455-589 (1321)
50 3g5u_A MCG1178, multidrug resi 99.8 4.3E-21 1.5E-25 173.5 5.1 120 10-143 1074-1207(1284)
51 3j16_B RLI1P; ribosome recycli 99.8 6.2E-20 2.1E-24 155.2 8.5 113 9-144 392-504 (608)
52 3bk7_A ABC transporter ATP-bin 99.8 2.6E-20 8.9E-25 157.6 1.0 117 9-143 131-264 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 5.8E-20 2E-24 153.6 2.1 117 9-143 61-194 (538)
54 3ozx_A RNAse L inhibitor; ATP 99.8 1.9E-19 6.6E-24 150.4 2.9 117 9-144 39-175 (538)
55 3ux8_A Excinuclease ABC, A sub 99.7 1.4E-17 4.9E-22 142.2 7.1 55 88-144 184-241 (670)
56 2iw3_A Elongation factor 3A; a 99.7 2.1E-17 7E-22 145.4 6.1 58 84-143 878-937 (986)
57 3j16_B RLI1P; ribosome recycli 99.7 4.1E-18 1.4E-22 144.1 -0.2 58 84-143 200-257 (608)
58 2iw3_A Elongation factor 3A; a 99.7 1.1E-16 3.7E-21 140.9 7.1 87 46-144 497-585 (986)
59 2npi_A Protein CLP1; CLP1-PCF1 99.6 5.3E-18 1.8E-22 139.3 -8.6 113 9-141 152-276 (460)
60 3ux8_A Excinuclease ABC, A sub 99.5 6.4E-15 2.2E-19 125.8 4.4 76 58-144 504-583 (670)
61 3pih_A Uvrabc system protein A 99.5 2.7E-14 9.1E-19 125.3 7.2 57 85-143 443-502 (916)
62 3sop_A Neuronal-specific septi 99.5 9.1E-17 3.1E-21 123.7 -9.8 115 9-142 16-130 (270)
63 2vf7_A UVRA2, excinuclease ABC 99.5 2.6E-14 9E-19 124.4 4.1 58 84-143 708-769 (842)
64 3pih_A Uvrabc system protein A 99.4 2.6E-13 8.8E-18 119.1 7.4 58 84-143 783-844 (916)
65 2r6f_A Excinuclease ABC subuni 99.4 2.2E-13 7.4E-18 119.6 6.7 84 57-143 450-542 (972)
66 4aby_A DNA repair protein RECN 99.4 1.2E-12 4.1E-17 105.4 10.6 34 106-141 296-331 (415)
67 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 1.7E-13 5.8E-18 96.7 3.6 42 99-142 51-98 (148)
68 2r6f_A Excinuclease ABC subuni 99.4 5.8E-13 2E-17 116.9 6.2 57 85-143 824-884 (972)
69 3b85_A Phosphate starvation-in 99.3 2E-15 7E-20 112.1 -8.4 91 10-137 37-134 (208)
70 1tq4_A IIGP1, interferon-induc 99.3 3.2E-15 1.1E-19 121.3 -8.5 109 9-144 83-203 (413)
71 2vf7_A UVRA2, excinuclease ABC 99.3 4.1E-13 1.4E-17 117.0 3.2 59 82-143 356-417 (842)
72 2ygr_A Uvrabc system protein A 99.3 1.2E-12 4.1E-17 115.2 5.9 57 85-143 842-902 (993)
73 2ygr_A Uvrabc system protein A 99.3 2.2E-12 7.7E-17 113.5 5.1 82 55-143 465-559 (993)
74 3b9q_A Chloroplast SRP recepto 99.3 8.7E-14 3E-18 108.7 -3.7 116 9-144 114-239 (302)
75 2og2_A Putative signal recogni 99.2 3.5E-13 1.2E-17 107.5 -2.1 116 9-144 171-296 (359)
76 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 3.2E-12 1.1E-16 102.1 3.3 42 100-143 274-321 (365)
77 3aez_A Pantothenate kinase; tr 99.2 5.7E-14 1.9E-18 110.2 -7.5 104 10-139 105-208 (312)
78 3kta_B Chromosome segregation 99.2 1.6E-11 5.6E-16 88.6 4.1 40 100-141 59-102 (173)
79 1e69_A Chromosome segregation 99.1 9.7E-11 3.3E-15 91.8 4.3 41 99-141 213-257 (322)
80 3qkt_A DNA double-strand break 99.0 4.9E-11 1.7E-15 94.1 2.1 41 99-141 242-288 (339)
81 1ye8_A Protein THEP1, hypothet 99.0 5.3E-11 1.8E-15 86.1 1.7 44 97-142 68-118 (178)
82 4ad8_A DNA repair protein RECN 99.0 1.3E-10 4.5E-15 96.5 4.0 41 101-143 392-435 (517)
83 2o5v_A DNA replication and rep 98.9 2.8E-10 9.5E-15 90.8 2.0 40 100-141 259-308 (359)
84 3auy_A DNA double-strand break 98.8 5.7E-09 1.9E-13 83.2 6.5 39 101-141 276-321 (371)
85 1rj9_A FTSY, signal recognitio 98.8 4.3E-10 1.5E-14 87.8 -0.9 113 9-141 116-237 (304)
86 1w1w_A Structural maintenance 98.8 5.8E-09 2E-13 84.6 4.8 40 100-141 328-371 (430)
87 4gp7_A Metallophosphoesterase; 98.7 2.2E-09 7.4E-14 76.7 1.2 48 92-142 71-118 (171)
88 2v9p_A Replication protein E1; 98.6 2.5E-10 8.6E-15 89.2 -7.6 75 47-145 156-231 (305)
89 2pt7_A CAG-ALFA; ATPase, prote 98.5 5.8E-08 2E-12 76.4 4.6 27 108-136 225-251 (330)
90 2qnr_A Septin-2, protein NEDD5 98.5 9E-11 3.1E-15 91.4 -13.1 112 9-142 32-145 (301)
91 2jeo_A Uridine-cytidine kinase 98.5 3.1E-09 1.1E-13 79.9 -4.3 101 43-150 58-164 (245)
92 2rcn_A Probable GTPase ENGC; Y 98.4 3.9E-08 1.3E-12 78.3 -0.1 101 10-123 230-331 (358)
93 1z6g_A Guanylate kinase; struc 98.3 1.7E-11 5.7E-16 91.2 -19.8 113 10-141 38-161 (218)
94 3asz_A Uridine kinase; cytidin 98.2 2.8E-09 9.7E-14 77.9 -9.6 85 45-137 33-123 (211)
95 3szr_A Interferon-induced GTP- 98.2 2.5E-08 8.4E-13 84.5 -6.3 58 9-69 59-122 (608)
96 1tf7_A KAIC; homohexamer, hexa 98.2 5.6E-07 1.9E-11 74.7 2.0 47 92-141 340-386 (525)
97 2dpy_A FLII, flagellum-specifi 98.1 3.6E-07 1.2E-11 74.6 0.1 101 10-143 172-284 (438)
98 1znw_A Guanylate kinase, GMP k 98.1 2.1E-10 7.4E-15 84.2 -18.4 113 9-139 34-155 (207)
99 2yv5_A YJEQ protein; hydrolase 98.0 1.2E-07 4E-12 73.8 -4.7 101 10-118 180-300 (302)
100 2f1r_A Molybdopterin-guanine d 97.9 5.9E-08 2E-12 69.6 -8.1 93 10-127 17-125 (171)
101 3thx_B DNA mismatch repair pro 97.9 4.4E-06 1.5E-10 73.6 2.1 52 89-143 719-770 (918)
102 1ewq_A DNA mismatch repair pro 97.8 2.3E-06 7.9E-11 74.2 -0.2 36 105-142 635-675 (765)
103 2eyu_A Twitching motility prot 97.7 1.9E-05 6.5E-10 60.0 3.6 25 113-142 88-112 (261)
104 1cr0_A DNA primase/helicase; R 97.7 9.3E-06 3.2E-10 62.2 1.9 108 10-137 50-159 (296)
105 1p9r_A General secretion pathw 97.7 1.4E-07 4.8E-12 76.5 -9.1 111 9-128 181-314 (418)
106 2i3b_A HCR-ntpase, human cance 97.7 8.4E-07 2.9E-11 64.5 -4.3 101 9-140 15-122 (189)
107 2bbw_A Adenylate kinase 4, AK4 97.7 2.9E-08 9.9E-13 74.5 -12.5 118 10-143 42-186 (246)
108 1nlf_A Regulatory protein REPA 97.6 6.8E-05 2.3E-09 57.0 4.5 52 85-141 98-151 (279)
109 1odf_A YGR205W, hypothetical 3 97.4 4.1E-06 1.4E-10 64.8 -3.8 94 46-142 65-169 (290)
110 3thx_A DNA mismatch repair pro 97.4 6.1E-05 2.1E-09 66.6 3.2 41 101-143 717-759 (934)
111 1nij_A Hypothetical protein YJ 97.4 3.6E-09 1.2E-13 82.8 -21.3 120 10-134 19-166 (318)
112 2qag_C Septin-7; cell cycle, c 97.4 1.1E-06 3.7E-11 71.4 -7.4 109 9-142 45-157 (418)
113 1zp6_A Hypothetical protein AT 97.4 3.3E-07 1.1E-11 65.7 -9.8 105 10-127 24-131 (191)
114 1pui_A ENGB, probable GTP-bind 97.4 0.00014 4.9E-09 52.2 3.9 57 85-143 128-186 (210)
115 1pzn_A RAD51, DNA repair and r 97.3 3.7E-06 1.3E-10 66.5 -5.4 33 107-141 208-247 (349)
116 1t9h_A YLOQ, probable GTPase E 97.2 3.8E-05 1.3E-09 59.9 -1.1 99 10-113 188-303 (307)
117 1u0l_A Probable GTPase ENGC; p 97.2 4.1E-06 1.4E-10 64.9 -6.6 89 9-108 183-294 (301)
118 2o8b_B DNA mismatch repair pro 97.1 0.00016 5.6E-09 64.5 2.2 48 92-142 838-885 (1022)
119 3jvv_A Twitching mobility prot 97.1 0.00047 1.6E-08 54.7 4.3 20 115-136 188-207 (356)
120 2yhs_A FTSY, cell division pro 97.0 2.7E-05 9.2E-10 64.4 -3.8 57 9-69 307-372 (503)
121 2obl_A ESCN; ATPase, hydrolase 96.7 0.00052 1.8E-08 54.2 2.0 101 9-143 85-197 (347)
122 3e70_C DPA, signal recognition 96.7 7.4E-05 2.5E-09 58.7 -3.2 57 9-69 143-208 (328)
123 1tf7_A KAIC; homohexamer, hexa 96.3 6.5E-06 2.2E-10 68.3 -11.9 41 10-54 54-98 (525)
124 2ewv_A Twitching motility prot 96.1 0.0055 1.9E-07 48.7 4.5 69 9-135 150-219 (372)
125 1htw_A HI0065; nucleotide-bind 96.0 0.00085 2.9E-08 47.1 -0.6 51 9-67 47-97 (158)
126 4a74_A DNA repair and recombin 95.9 0.0004 1.4E-08 50.5 -2.7 17 122-140 124-140 (231)
127 1wb9_A DNA mismatch repair pro 95.8 0.0043 1.5E-07 54.1 2.9 38 102-142 666-703 (800)
128 1in4_A RUVB, holliday junction 95.4 0.00028 9.6E-09 55.1 -5.5 104 10-117 66-174 (334)
129 2qm8_A GTPase/ATPase; G protei 95.2 0.00014 4.7E-09 57.2 -8.0 45 9-57 69-120 (337)
130 2ehv_A Hypothetical protein PH 95.2 0.00042 1.4E-08 51.0 -5.0 31 107-139 119-149 (251)
131 1sxj_E Activator 1 40 kDa subu 95.2 0.012 4.3E-07 45.4 3.2 42 10-54 51-93 (354)
132 2cvh_A DNA repair and recombin 94.7 0.014 4.7E-07 41.9 2.2 36 104-141 83-121 (220)
133 1vma_A Cell division protein F 94.6 0.037 1.3E-06 42.8 4.6 42 88-136 153-197 (306)
134 2qag_B Septin-6, protein NEDD5 94.3 0.0021 7.3E-08 52.1 -3.2 116 9-141 56-192 (427)
135 2x8a_A Nuclear valosin-contain 93.9 5.3E-06 1.8E-10 63.5 -18.6 101 10-135 59-163 (274)
136 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.041 1.4E-06 39.5 3.0 35 105-141 103-141 (235)
137 2gza_A Type IV secretion syste 93.2 0.1 3.5E-06 41.1 4.7 57 10-70 190-250 (361)
138 1udx_A The GTP-binding protein 92.1 0.027 9.4E-07 45.4 -0.0 36 100-141 247-282 (416)
139 3c8u_A Fructokinase; YP_612366 91.2 0.0011 3.7E-08 48.1 -8.4 30 104-135 110-140 (208)
140 1iy2_A ATP-dependent metallopr 88.5 0.00035 1.2E-08 52.9 -13.4 98 10-126 88-190 (278)
141 1lw7_A Transcriptional regulat 87.8 0.11 3.7E-06 40.7 0.2 29 105-135 296-329 (365)
142 1sq5_A Pantothenate kinase; P- 86.5 0.28 9.6E-06 37.5 1.9 58 10-71 95-155 (308)
143 1ixz_A ATP-dependent metallopr 85.7 0.00041 1.4E-08 51.7 -14.3 28 104-135 144-171 (254)
144 1qhl_A Protein (cell division 85.0 0.38 1.3E-05 35.5 1.8 40 9-52 41-91 (227)
145 3euj_A Chromosome partition pr 83.0 0.96 3.3E-05 37.1 3.6 43 100-143 374-431 (483)
146 1ls1_A Signal recognition part 76.2 2.4 8.1E-05 32.2 3.7 50 87-140 146-196 (295)
147 1s96_A Guanylate kinase, GMP k 76.1 0.13 4.5E-06 37.6 -3.3 46 9-57 30-75 (219)
148 1b9m_A Protein (mode); DNA-bin 74.9 0.49 1.7E-05 35.1 -0.5 49 78-127 47-95 (265)
149 4a1f_A DNAB helicase, replicat 71.7 2.9 9.8E-05 32.6 3.2 34 104-139 108-141 (338)
150 2kjq_A DNAA-related protein; s 70.8 3.2 0.00011 28.0 2.9 14 121-136 81-94 (149)
151 2e87_A Hypothetical protein PH 70.5 4 0.00014 31.6 3.8 40 100-142 226-266 (357)
152 1lw7_A Transcriptional regulat 68.7 0.47 1.6E-05 37.0 -1.9 41 102-144 255-305 (365)
153 3euj_A Chromosome partition pr 67.7 1.1 3.6E-05 36.9 -0.1 26 9-38 43-68 (483)
154 2xau_A PRE-mRNA-splicing facto 67.7 0.69 2.4E-05 40.1 -1.2 38 101-140 186-224 (773)
155 3ec2_A DNA replication protein 62.2 4.1 0.00014 27.8 2.1 20 121-142 98-118 (180)
156 2qtf_A Protein HFLX, GTP-bindi 61.9 37 0.0013 26.4 7.8 51 85-141 280-339 (364)
157 1n0w_A DNA repair protein RAD5 55.6 11 0.00037 26.7 3.6 34 106-141 99-135 (243)
158 2ius_A DNA translocase FTSK; n 54.0 0.31 1E-05 40.4 -5.6 57 81-139 242-311 (512)
159 2r6a_A DNAB helicase, replicat 48.8 22 0.00074 28.4 4.6 52 84-139 274-327 (454)
160 2oap_1 GSPE-2, type II secreti 45.5 35 0.0012 27.9 5.4 23 10-36 275-297 (511)
161 2bdt_A BH3686; alpha-beta prot 44.8 0.91 3.1E-05 31.5 -3.7 52 10-67 13-64 (189)
162 3bh0_A DNAB-like replicative h 41.6 6.9 0.00024 29.7 0.6 30 106-137 134-163 (315)
163 1oix_A RAS-related protein RAB 40.4 11 0.00037 25.9 1.4 28 112-143 152-179 (191)
164 3tr0_A Guanylate kinase, GMP k 31.1 2.3 7.7E-05 29.6 -3.5 43 10-60 22-67 (205)
165 2px0_A Flagellar biosynthesis 28.4 40 0.0014 25.3 3.0 24 113-142 174-197 (296)
166 2dhr_A FTSH; AAA+ protein, hex 27.9 0.23 7.8E-06 41.0 -10.4 28 105-136 160-187 (499)
167 3lda_A DNA repair protein RAD5 26.1 44 0.0015 26.4 2.9 17 122-140 272-288 (400)
168 2ce7_A Cell division protein F 25.9 39 0.0013 27.5 2.6 26 108-135 93-118 (476)
169 4goq_A Hypothetical protein; P 25.7 45 0.0015 21.6 2.3 14 116-129 80-93 (110)
170 4eun_A Thermoresistant glucoki 23.2 4.1 0.00014 28.5 -3.4 54 10-67 40-95 (200)
171 1nrp_R Receptor based peptide 22.9 25 0.00084 16.1 0.5 7 2-8 2-8 (26)
172 3b9p_A CG5977-PA, isoform A; A 20.8 62 0.0021 23.6 2.7 31 107-139 97-127 (297)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=4e-30 Score=205.55 Aligned_cols=127 Identities=24% Similarity=0.271 Sum_probs=108.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++|+|+|++. |++|+|+++|+++... ..++.+||+||++.+++.+||.||+.++...+ .......
T Consensus 68 STLlr~i~GL~~----p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~ 140 (366)
T 3tui_C 68 STLIRCVNLLER----PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEV 140 (366)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHH
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHH
Confidence 367888888877 4899999999998642 13567999999999999999999999876543 2345566
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.++|.+..++++.+|||||||||+|||||+.+|+++| +||||+||||.++.
T Consensus 141 ~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL--lDEPTs~LD~~~~~ 200 (366)
T 3tui_C 141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL--CDQATSALDPATTR 200 (366)
T ss_dssp HHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE--EESTTTTSCHHHHH
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCCccCCHHHHH
Confidence 6789999999999999999999999999999999999999999888 99999999987543
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=7.4e-30 Score=193.43 Aligned_cols=130 Identities=21% Similarity=0.210 Sum_probs=105.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++++|+|++. |++|+|+++|.++.... .++.+||+||++.+++.+|+.||+.++...+.........
T Consensus 45 STLl~~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 120 (235)
T 3tif_A 45 STMLNIIGCLDK----PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120 (235)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH
T ss_pred HHHHHHHhcCCC----CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH
Confidence 367888888877 48999999999985421 1345999999999999999999998865433111233445
Q ss_pred HHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 82 RARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.++++.+++.+. .++++.+||||||||++|||||+.+|+++| |||||+|+|+.++.
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll--lDEPts~LD~~~~~ 182 (235)
T 3tif_A 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL--ADQPTWALDSKTGE 182 (235)
T ss_dssp HHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence 56778899999999875 499999999999999999999999999888 99999999987543
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=6.8e-30 Score=205.27 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=108.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++.| ++|+|+++|+++... ..++.+||+||++.+|+.+||.||+.|+...+ ........+++.
T Consensus 43 STLLr~iaGl~~p----~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~ 115 (381)
T 3rlf_A 43 STLLRMIAGLETI----TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVN 115 (381)
T ss_dssp HHHHHHHHTSSCC----SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCC----CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 3788888888874 899999999998643 33567999999999999999999999876543 234556677899
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+.
T Consensus 116 ~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL--LDEPts~LD~~ 167 (381)
T 3rlf_A 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL--LDEPLSNLDAA 167 (381)
T ss_dssp HHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE--EESTTTTSCHH
T ss_pred HHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE--EECCCcCCCHH
Confidence 99999999999999999999999999999999999999888 99999999976
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=4.1e-30 Score=205.23 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=106.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC----cc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE----KN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~----~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++|+|+|++.| ++|+|+++|+++. .. ..++.+||+||+..+|+.+||.||+.|+...+ ........
T Consensus 44 STLLr~iaGl~~p----~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~ 116 (359)
T 3fvq_A 44 TTLLRCLAGFEQP----DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQER 116 (359)
T ss_dssp HHHHHHHHTSSCC----SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHH
T ss_pred HHHHHHHhcCCCC----CCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHH
Confidence 3788888888874 8999999999872 22 34567999999999999999999998864332 22334556
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.++|.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+..+
T Consensus 117 ~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL--LDEPts~LD~~~r 174 (359)
T 3fvq_A 117 QRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL--LDEPFSALDEQLR 174 (359)
T ss_dssp HHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHH
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 789999999999999999999999999999999999999999988 9999999998643
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.96 E-value=1.8e-29 Score=201.32 Aligned_cols=125 Identities=22% Similarity=0.201 Sum_probs=107.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+ ........+++.
T Consensus 55 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~ 127 (355)
T 1z47_A 55 TTILRLIAGLER----PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVR 127 (355)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred HHHHHHHhCCCC----CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 378888888887 4899999999998643 34567999999999999999999999876443 223445567899
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+.+
T Consensus 128 ~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~~ 180 (355)
T 1z47_A 128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL--FDEPFAAIDTQI 180 (355)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTCCSSHHH
T ss_pred HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHH
Confidence 99999999999999999999999999999999999999888 999999999763
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=2.7e-29 Score=189.11 Aligned_cols=126 Identities=25% Similarity=0.260 Sum_probs=104.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc------c-cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL------M-VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~------~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++|+|+|++. |++|+|.++|.++.... . ++.++|+||++.+++.+|+.||+.++...+ ......
T Consensus 44 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~ 116 (224)
T 2pcj_A 44 STLLYILGLLDA----PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKE 116 (224)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHH
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHH
Confidence 367888888877 48999999999985321 1 256999999999899999999998765432 123334
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll--LDEPt~~LD~~~~ 176 (224)
T 2pcj_A 117 AKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF--ADEPTGNLDSANT 176 (224)
T ss_dssp HHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE--EESTTTTCCHHHH
T ss_pred HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCCCCCCHHHH
Confidence 45678899999999998999999999999999999999999999888 9999999998744
No 7
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=2.3e-29 Score=200.76 Aligned_cols=124 Identities=20% Similarity=0.164 Sum_probs=104.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc------ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
|++|+|+|++. |++|+|.++|.++.. ...++.+||+||+..+|+.+|+.||+.|+...+ ........
T Consensus 46 TLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~ 118 (353)
T 1oxx_K 46 TFMRIIAGLDV----PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIR 118 (353)
T ss_dssp HHHHHHHTSSC----CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHH
T ss_pred HHHHHHhCCCC----CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 67777777776 589999999998753 234567999999999999999999998764332 22344456
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+++.++++.++|.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+..
T Consensus 119 ~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLL--LDEP~s~LD~~~ 175 (353)
T 1oxx_K 119 KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL--LDEPFSNLDARM 175 (353)
T ss_dssp HHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCGGG
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHH
Confidence 788999999999999999999999999999999999999999988 999999999763
No 8
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.96 E-value=3e-29 Score=200.64 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+ ........++++
T Consensus 43 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~ 115 (362)
T 2it1_A 43 STLLYTIAGIYK----PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVR 115 (362)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 378888888887 4899999999998643 23567999999999999999999999875443 223444567889
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+.
T Consensus 116 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~ 167 (362)
T 2it1_A 116 EVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL--LDEPLSNLDAL 167 (362)
T ss_dssp HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESGGGGSCHH
T ss_pred HHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHH
Confidence 99999999999999999999999999999999999999888 99999999976
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=4e-29 Score=200.58 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=106.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc------c-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK------N-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~------~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~ 81 (156)
.|++|+|+|++. |++|+|+++|.++.. . ..++.+||+||+..+|+.+|+.||+.|+...+ ......
T Consensus 43 STLLr~iaGl~~----p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~ 115 (372)
T 1g29_1 43 TTTLRMIAGLEE----PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQE 115 (372)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHH
T ss_pred HHHHHHHHcCCC----CCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 378888888887 489999999998753 2 23567999999999999999999999876443 223444
Q ss_pred HHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..++++++++.++|.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+..
T Consensus 116 ~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~~ 174 (372)
T 1g29_1 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL--MDEPLSNLDAKL 174 (372)
T ss_dssp HHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE--EECTTTTSCHHH
T ss_pred HHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--ECCCCccCCHHH
Confidence 56788999999999999999999999999999999999999999988 999999999763
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=4.7e-29 Score=191.92 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=104.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC--cc---cccceeeEecCCCCCCCCCCHHHHHHHHH-HhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--KN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~ 82 (156)
.|++|+|+|++. |++|+|.++|.++. .. ..++.+||+||++.+++.+|+.||+.++. ... .......
T Consensus 64 STLlk~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~ 136 (263)
T 2olj_A 64 STFLRCLNLLED----FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKA 136 (263)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHH
T ss_pred HHHHHHHHcCCC----CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHH
Confidence 367888888877 58999999999874 11 23456999999998899999999998753 222 2233344
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|+||.++.
T Consensus 137 ~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll--LDEPts~LD~~~~~ 196 (263)
T 2olj_A 137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML--FDEPTSALDPEMVG 196 (263)
T ss_dssp HHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHHHHH
T ss_pred HHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE--EeCCcccCCHHHHH
Confidence 5678899999999988999999999999999999999999999888 99999999987543
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=6e-29 Score=190.66 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=105.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.+||+||++.+++.+|+.||+.+....+ ........+++
T Consensus 55 STLlk~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~ 127 (256)
T 1vpl_A 55 TTTLRIISTLIK----PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMV 127 (256)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHH
T ss_pred HHHHHHHhcCCC----CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHH
Confidence 378888888877 4899999999998532 23567999999998899999999998865432 12233344678
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 128 ~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll--LDEPts~LD~~~~ 182 (256)
T 1vpl_A 128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI--LDEPTSGLDVLNA 182 (256)
T ss_dssp HHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHH
T ss_pred HHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCccccCHHHH
Confidence 899999999988999999999999999999999999999888 9999999998744
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=4.8e-29 Score=191.75 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc----------------ccccceeeEecCCCCCCCCCCHHHHHHHHH-Hh
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK----------------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA-RL 71 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~----------------~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~-~~ 71 (156)
.|++|+|+|++. |++|+|.++|.++.. ...++.+||+||++.+++.+|+.||+.++. ..
T Consensus 46 STLlk~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~ 121 (262)
T 1b0u_A 46 STFLRCINFLEK----PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 121 (262)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh
Confidence 367888888877 489999999998751 123456999999998899999999998753 22
Q ss_pred hcccCCcHHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 72 KMDRNLHHVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+ ........+++.++++.+++.+. .++++.+|||||||||+||+||+.+|+++| |||||+|+|+.++
T Consensus 122 ~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll--LDEPts~LD~~~~ 189 (262)
T 1b0u_A 122 L---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL--FDEPTSALDPELV 189 (262)
T ss_dssp T---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTSCHHHH
T ss_pred c---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE--EeCCCccCCHHHH
Confidence 2 22333445678899999999988 899999999999999999999999999888 9999999998744
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=3.7e-29 Score=193.59 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=105.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--c---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--N---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++|+|+|++. |++|+|+++|.++.. . ..++.+||+||++. .+...|+.+|+.++.... .......
T Consensus 48 STLl~~l~Gl~~----p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 120 (275)
T 3gfo_A 48 STLFQNFNGILK----PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEI 120 (275)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHH
T ss_pred HHHHHHHHcCCC----CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHH
Confidence 367888888877 489999999999841 1 24567999999873 345789999998875432 2345556
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|+||.++.
T Consensus 121 ~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl--LDEPts~LD~~~~~ 180 (275)
T 3gfo_A 121 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI--LDEPTAGLDPMGVS 180 (275)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE--EECTTTTCCHHHHH
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHHH
Confidence 6789999999999999999999999999999999999999999988 99999999987543
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=2.4e-29 Score=200.98 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=104.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|.++|.+++.. ..++.+||+||+..+|+.+|+.||+.|+...+ ........+++.
T Consensus 43 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~ 115 (359)
T 2yyz_A 43 TTTLLMLAGIYK----PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVV 115 (359)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHH
T ss_pred HHHHHHHHCCCC----CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 378888888877 4899999999998643 23567999999999999999999998764322 122233346789
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+.
T Consensus 116 ~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~ 167 (359)
T 2yyz_A 116 EIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL--FDEPLSNLDAN 167 (359)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHH
Confidence 99999999999999999999999999999999999999888 99999999976
No 15
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=3.6e-29 Score=190.23 Aligned_cols=124 Identities=27% Similarity=0.277 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.+||+||++.+++.+|+.||+.++...+ . .....+++.
T Consensus 38 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~ 108 (240)
T 2onk_A 38 SVFLELIAGIVK----PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVR 108 (240)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHH
T ss_pred HHHHHHHhCCCC----CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHH
Confidence 378888888877 4899999999998532 33567999999999999999999997653221 1 112256788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 109 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll--LDEPts~LD~~~~ 162 (240)
T 2onk_A 109 EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL--LDEPLSAVDLKTK 162 (240)
T ss_dssp HHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE--EESTTSSCCHHHH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 99999999988999999999999999999999999999998 9999999998743
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=4e-29 Score=200.51 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=99.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|+++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+ ........+++.
T Consensus 51 STLLr~iaGl~~----p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~ 123 (372)
T 1v43_A 51 TTTLRMIAGLEE----PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVR 123 (372)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHH
T ss_pred HHHHHHHHcCCC----CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 378888888887 4899999999998643 23567999999999999999999998764322 223444566889
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.++|.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+.
T Consensus 124 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL--LDEP~s~LD~~ 175 (372)
T 1v43_A 124 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL--MDEPLSNLDAK 175 (372)
T ss_dssp HHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE--EESTTTTSCHH
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE--EcCCCccCCHH
Confidence 99999999999999999999999999999999999999988 99999999976
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=9.7e-29 Score=196.80 Aligned_cols=121 Identities=23% Similarity=0.226 Sum_probs=102.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.+||+||+..+|+.+|+.||+.|+...+. .... +++.
T Consensus 40 STLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~ 109 (348)
T 3d31_A 40 TLFLELIAGFHV----PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVL 109 (348)
T ss_dssp HHHHHHHHTSSC----CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHH
T ss_pred HHHHHHHHcCCC----CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHH
Confidence 367777777776 5899999999998642 335679999999999999999999998764431 1111 6788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|||+.
T Consensus 110 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL--LDEP~s~LD~~ 161 (348)
T 3d31_A 110 DTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL--LDEPLSALDPR 161 (348)
T ss_dssp HHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE--EESSSTTSCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHH
Confidence 99999999999999999999999999999999999999988 99999999976
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=1.9e-28 Score=183.35 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=101.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|++. |++|+|.++|.++. ..++.++|+||++.+++.+|+.||+.++...+. ... . .+++.+
T Consensus 49 STLlk~l~Gl~~----p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~~-~-~~~~~~ 117 (214)
T 1sgw_A 49 TTLLKTISTYLK----PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VKV-N-KNEIMD 117 (214)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CCC-C-HHHHHH
T ss_pred HHHHHHHhcCCC----CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cch-H-HHHHHH
Confidence 378888888877 48999999999886 346779999999988999999999987654321 111 1 356788
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+. ++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 118 ~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lll--LDEPts~LD~~~~ 169 (214)
T 1sgw_A 118 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYV--LDDPVVAIDEDSK 169 (214)
T ss_dssp HHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEE--EESTTTTSCTTTH
T ss_pred HHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCCcCCCHHHH
Confidence 9999999888 99999999999999999999999999988 9999999998744
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=9.9e-29 Score=189.44 Aligned_cols=129 Identities=17% Similarity=0.105 Sum_probs=103.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCHHHHHHHHHHh-hccc--------
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KMDR-------- 75 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~~~~-------- 75 (156)
.|++|+|+|++. |++|+|.++|.++... ..++.+||+||++.+++.+|+.||+.++... +...
T Consensus 47 STLlk~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 122 (257)
T 1g6h_A 47 STLINVITGFLK----ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK 122 (257)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCS
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCccccccccc
Confidence 378888888877 4899999999998542 1245699999999888899999999875322 1000
Q ss_pred -CCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 76 -NLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 76 -~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
........+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|+|+.++
T Consensus 123 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll--LDEPts~LD~~~~ 189 (257)
T 1g6h_A 123 WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV--MDEPIAGVAPGLA 189 (257)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence 01223345678899999999988999999999999999999999999999888 9999999998743
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=3.2e-28 Score=187.56 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=103.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|+|+|++. |++|+|.++|+++... ..++.++|++|++.+++.+|+.||+.++...+ ......++
T Consensus 51 STLl~~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~ 121 (266)
T 4g1u_C 51 STLLRLLTGYLS----PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQA 121 (266)
T ss_dssp HHHHHHHTSSSC----CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHH
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHH
Confidence 367888888877 4899999999998643 23566899999998888899999998754322 11234567
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc------CCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ------DCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~------~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..++++.+||||||||++|||||+. +|+++| |||||+|+||.++
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl--lDEPts~LD~~~~ 183 (266)
T 4g1u_C 122 LQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF--LDEPTSALDLYHQ 183 (266)
T ss_dssp HHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE--ECCCCSSCCHHHH
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE--EeCccccCCHHHH
Confidence 8899999999999999999999999999999999999 999888 9999999998744
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=4.3e-28 Score=184.23 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 84 (156)
.|++|+|+|++. |++|+|.++|.++.... .++.+||+||++.+++.+|+.||+.++.... .......+
T Consensus 46 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~ 117 (240)
T 1ji0_A 46 TTTLSAIAGLVR----AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKR 117 (240)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHH
T ss_pred HHHHHHHhCCCC----CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHH
Confidence 367888888877 48999999999985421 2345999999999999999999998753111 11123445
Q ss_pred HHHHHHHHcC-CCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELG-LLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~-L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++++.++ +.+..++++.+||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 118 ~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll--LDEPts~LD~~~~ 175 (240)
T 1ji0_A 118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM--MDEPSLGLAPILV 175 (240)
T ss_dssp HHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE--EECTTTTCCHHHH
T ss_pred HHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCCcccCCHHHH
Confidence 6788999994 9888899999999999999999999999999888 9999999998743
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=5.6e-28 Score=186.15 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=100.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++. |++|+|.++|.++.....++.+||+||++ ..++..|+.||+.++.... .......+++.
T Consensus 47 STLl~~i~Gl~~----p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~ 118 (266)
T 2yz2_A 47 STLLQIVAGLIE----PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVK 118 (266)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHH
T ss_pred HHHHHHHhCCCC----CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 367888888877 48999999999885433456799999995 4566789999998753221 11112235678
Q ss_pred HHHHHcCCC--ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLL--KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~--~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 119 ~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll--LDEPts~LD~~~~ 174 (266)
T 2yz2_A 119 KAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI--LDEPLVGLDREGK 174 (266)
T ss_dssp HHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHH
T ss_pred HHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEE--EcCccccCCHHHH
Confidence 999999998 88999999999999999999999999999988 9999999998643
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=2.5e-27 Score=180.98 Aligned_cols=129 Identities=22% Similarity=0.152 Sum_probs=96.9
Q ss_pred HHHHHHHhhh--hhcCCCCcceEEEECCEecCccc----ccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHH
Q psy16753 9 FSGIHLLGQR--VVHELSDVDGQILLNGLEVEKNL----MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82 (156)
Q Consensus 9 ~~~l~~l~g~--~~~~~~~~~G~I~~~G~~i~~~~----~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~ 82 (156)
.|++|+|+|+ +. |++|+|.++|.++.... .+..++|+||++.+++.+|+.+++.+...............
T Consensus 43 STLlk~l~Gl~~~~----p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 118 (250)
T 2d2e_A 43 STLGKILAGDPEYT----VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEF 118 (250)
T ss_dssp HHHHHHHHTCTTCE----EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHH
T ss_pred HHHHHHHhCCCCCC----CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHH
Confidence 3788999998 44 58999999999985421 13348999999999999999999987542211111122334
Q ss_pred HHHHHHHHHHcCC-CccccCccCc-CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 83 ARTVDALLKELGL-LKCKNSVLNV-LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 83 ~~~~~~~l~~~~L-~~~~~~~~~~-LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+++.++++.+++ .+..++++.+ ||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 119 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lll--LDEPts~LD~~~~ 179 (250)
T 2d2e_A 119 WTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV--LDETDSGLDIDAL 179 (250)
T ss_dssp HHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEE--EECGGGTTCHHHH
T ss_pred HHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEE--EeCCCcCCCHHHH
Confidence 4678899999999 4778999999 99999999999999999999888 9999999997643
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=1.8e-27 Score=184.50 Aligned_cols=128 Identities=20% Similarity=0.128 Sum_probs=98.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC--c---ccccceeeEecCCCCCC--CCCCHHHHHHHHHHhh-cccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--K---NLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLK-MDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~---~~~~~~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~-~~~~~~~~ 80 (156)
.|++|+|+|++. |++|+|.++|.++. . ...++.+||+||++..+ +.+|+.||+.++.... ........
T Consensus 61 STLlk~l~Gl~~----p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~ 136 (279)
T 2ihy_A 61 TTLLNILNAYEP----ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136 (279)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCH
T ss_pred HHHHHHHhCCCC----CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcH
Confidence 367888888877 48999999999875 2 12356799999986532 3569999997642110 00011122
Q ss_pred HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
...+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|+|+.+
T Consensus 137 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLl--LDEPts~LD~~~ 196 (279)
T 2ihy_A 137 EIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLI--LDEPAAGLDFIA 196 (279)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EESTTTTCCHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEE--EeCCccccCHHH
Confidence 344678899999999988999999999999999999999999999888 999999999764
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=6e-27 Score=178.90 Aligned_cols=121 Identities=19% Similarity=0.132 Sum_probs=100.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|+|+|++. |+ |+|.++|.++... ..++.++|+||++.+++.+|+.||+.++. .. ... .++
T Consensus 40 STLlk~l~Gl~~----p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~---~~~----~~~ 106 (249)
T 2qi9_C 40 STLLARMAGMTS----GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HD---KTR----TEL 106 (249)
T ss_dssp HHHHHHHTTSSC----CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SS---TTC----HHH
T ss_pred HHHHHHHhCCCC----CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-cc---CCc----HHH
Confidence 367888888877 48 9999999987532 23567999999998888999999997642 11 111 456
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCC-------eeEEecCCCCCCCCchhhh
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS-------RVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~-------ill~~~Dep~~g~~~~~~~ 144 (156)
+.++++.+++.+..++++.+||||||||++||+||+.+|+ ++| |||||+|+|+.++.
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll--LDEPts~LD~~~~~ 170 (249)
T 2qi9_C 107 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL--LDEPMNSLDVAQQS 170 (249)
T ss_dssp HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE--ESSTTTTCCHHHHH
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE--EECCcccCCHHHHH
Confidence 8899999999998999999999999999999999999999 998 99999999987443
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=3.5e-27 Score=182.19 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=97.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERAR 84 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~ 84 (156)
.|++|+|+|++. |++|+|+++|.++... ..++.++|+||++.+++ .|+.||+.++...... ..........
T Consensus 59 STLlk~l~Gl~~----p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ 133 (271)
T 2ixe_A 59 STVAALLQNLYQ----PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMES 133 (271)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC----CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHH
Confidence 367888888877 5899999999998542 23567999999998877 5999999864211100 0000001122
Q ss_pred HHHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 85 TVDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 85 ~~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.+.++++.+ ++....++++.+||||||||++|||||+.+|+++| |||||+|+|+.++.
T Consensus 134 ~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll--LDEPts~LD~~~~~ 193 (271)
T 2ixe_A 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI--LDNATSALDAGNQL 193 (271)
T ss_dssp TCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEE--EESTTTTCCHHHHH
T ss_pred hHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEE--EECCccCCCHHHHH
Confidence 345678888 78777889999999999999999999999999988 99999999987543
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.93 E-value=3.4e-26 Score=175.03 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=96.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcc-cCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD-RNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. |++|+|. .++.++|+||++.+++.+|+.||+.++...... .........+++.
T Consensus 45 STLl~~l~Gl~~----p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 45 STLLDLLLGIHR----PIQGKIE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp HHHHHHHTTSSC----CSEEEEE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCC----CCCcEEE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 367888888877 4899998 245699999999888889999999875321100 0011223456788
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
++++.+++.+..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++.
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll--LDEPts~LD~~~~~ 165 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL--LDEPTSALDLANQD 165 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEE--ESSSSTTSCHHHHH
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHHH
Confidence 99999999998999999999999999999999999999888 99999999987543
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=1.9e-26 Score=177.37 Aligned_cols=119 Identities=20% Similarity=0.144 Sum_probs=98.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceee-EecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSG-FVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig-~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++|+|+|++ | ++|+|.++|.++.....++.++ |+||++.+ .+|+.||+.+....+ . ...+++.
T Consensus 44 STLlk~l~Gl~-p----~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~----~~~~~~~ 109 (263)
T 2pjz_A 44 TTLLRAISGLL-P----YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---G----LDRDLFL 109 (263)
T ss_dssp HHHHHHHTTSS-C----CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---C----CCHHHHH
T ss_pred HHHHHHHhCCC-C----CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---c----hHHHHHH
Confidence 36788888887 6 7999999999875321255799 99999876 789999998765332 1 1134678
Q ss_pred HHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 88 ALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 88 ~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+++. +..++++.+||||||||++||+||+.+|+++| |||||+|+|+.++
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll--LDEPts~LD~~~~ 164 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG--LDEPFENVDAARR 164 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE--EECTTTTCCHHHH
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCccccCHHHH
Confidence 899999998 88999999999999999999999999999888 9999999998743
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=8.5e-26 Score=174.04 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=100.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cc-cceeeEecCCCCCCCCCCHHHHHHHHHH-hh---cccCCcHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LM-VKVSGFVPQHDLTVDTLTVHEHMTLMAR-LK---MDRNLHHV 80 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~-~~~ig~v~Q~~~~~~~ltv~e~l~~~~~-~~---~~~~~~~~ 80 (156)
.|++|+|+|++. ++|++|+|.++|.++... .. +..++|+||++.+++.+|+.+++.+... .. ........
T Consensus 60 STLlk~l~Gl~~--~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~ 137 (267)
T 2zu0_C 60 STLSATLAGRED--YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 137 (267)
T ss_dssp HHHHHHHHTCTT--CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHH
T ss_pred HHHHHHHhCCCC--CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHH
Confidence 378899999842 115899999999987542 11 2348999999999999999999876532 11 10111233
Q ss_pred HHHHHHHHHHHHcCCC-ccccCccC-cCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 81 ERARTVDALLKELGLL-KCKNSVLN-VLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
...+++.++++.+++. ...++++. +||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 138 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLl--LDEPts~LD~~~~ 200 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI--LDESDSGLDIDAL 200 (267)
T ss_dssp HHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEE--EESTTTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEE--EeCCCCCCCHHHH
Confidence 3456788999999996 56788887 599999999999999999999888 9999999998743
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=2.4e-26 Score=175.28 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=91.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|+|+|++. |++|+|.++|.++... .+++.+||+||++.+++ .|+.||+.++.. ... .++
T Consensus 49 STLl~~l~Gl~~----p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~ 114 (247)
T 2ff7_A 49 STLTKLIQRFYI----PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEK 114 (247)
T ss_dssp HHHHHHHTTSSC----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHH
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHH
Confidence 367888888877 5899999999998542 24567999999998876 599999976421 111 234
Q ss_pred HHHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+. .++++.+||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 115 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lll--LDEPts~LD~~~~ 181 (247)
T 2ff7_A 115 VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI--FDEATSALDYESE 181 (247)
T ss_dssp HHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE--ECCCCSCCCHHHH
T ss_pred HHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCCcccCCHHHH
Confidence 5566666666543 345568999999999999999999999888 9999999998743
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=5.2e-26 Score=178.31 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=89.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|+++|.++... .+++.+||+||++.+|+ .|++||+.++.... .. +.+
T Consensus 95 TLl~ll~gl~~----p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~~----~~~ 160 (306)
T 3nh6_A 95 TILRLLFRFYD----ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----GN----DEV 160 (306)
T ss_dssp HHHHHHTTSSC----CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----CH----HHH
T ss_pred HHHHHHHcCCC----CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----CH----HHH
Confidence 55666666665 5899999999998653 35677999999998885 59999998653211 11 123
Q ss_pred HHHHHHcCC-----------CccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGL-----------LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L-----------~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++ ....++...+||||||||++|||||+.+|+++| |||||+|+|+.+..
T Consensus 161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLl--LDEPts~LD~~~~~ 227 (306)
T 3nh6_A 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIIL--LDEATSALDTSNER 227 (306)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCSSCCCHHHHH
T ss_pred HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEE--EECCcccCCHHHHH
Confidence 333444433 344566678999999999999999999999888 99999999987543
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=4e-26 Score=173.57 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=93.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+++ .|+.||+.++... ... .++
T Consensus 42 STLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~ 108 (243)
T 1mv5_A 42 STIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DED 108 (243)
T ss_dssp HHHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHH
T ss_pred HHHHHHHhcCCC----CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHH
Confidence 367888888877 5899999999988532 34567999999998877 4999999754211 111 234
Q ss_pred HHHHHHHcCCCcccc-----------CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~-----------~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+..+ +++.+||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll--LDEPts~LD~~~~ 175 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM--LDEATASLDSESE 175 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCSCSSCSSSC
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence 667788888866544 4467999999999999999999999888 9999999998743
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=9.5e-25 Score=167.60 Aligned_cols=118 Identities=24% Similarity=0.233 Sum_probs=90.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|+|+|++. | +|+|.++|.++... ..++.++|+||++.+++ .|+.+|+.++. . ... .++
T Consensus 60 STLl~~l~Gl~~----~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-~----~~~----~~~ 124 (260)
T 2ghi_A 60 STIAKLLYRFYD----A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK-L----DAT----DEE 124 (260)
T ss_dssp HHHHHHHTTSSC----C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC-T----TCC----HHH
T ss_pred HHHHHHHhccCC----C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC-C----CCC----HHH
Confidence 367888888865 3 89999999998542 24567999999998876 59999997632 1 111 124
Q ss_pred HHHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 VDALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ~~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.++++.+++.+. .++++.+||||||||++|||||+.+|+++| |||||+|+|+.++
T Consensus 125 ~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll--LDEPts~LD~~~~ 191 (260)
T 2ghi_A 125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI--FDEATSSLDSKTE 191 (260)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE--EECCCCTTCHHHH
T ss_pred HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHH
Confidence 4566666665432 246778999999999999999999999988 9999999998743
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.2e-25 Score=178.81 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=95.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
.|++|+|+|++. ++|+|+++|+++... ..++.+||+||++.+|+ .|+.+|+.+.. .. ..++
T Consensus 61 STLLr~iaGl~~-----~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~ 124 (390)
T 3gd7_A 61 STLLSAFLRLLN-----TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQE 124 (390)
T ss_dssp HHHHHHHHTCSE-----EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHH
T ss_pred HHHHHHHhCCCC-----CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHH
Confidence 367888888765 589999999998643 24577999999999887 59999985321 11 1245
Q ss_pred HHHHHHHcCCCccccCccCc-----------CChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 86 VDALLKELGLLKCKNSVLNV-----------LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~-----------LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+.++++.+++.+..++++.+ |||||||||+|||||+.+|+++| |||||+|||+.
T Consensus 125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL--LDEPts~LD~~ 189 (390)
T 3gd7_A 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL--LDEPSAHLDPV 189 (390)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE--EESHHHHSCHH
T ss_pred HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE--EeCCccCCCHH
Confidence 77899999999888999988 99999999999999999999988 99999999976
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=5.5e-24 Score=160.51 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++|+|+|++. |++|+|.++| .++|+||++.+++. |+.||+.++... .. ....+.
T Consensus 49 TLl~~l~Gl~~----p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~ 103 (229)
T 2pze_A 49 SLLMMIMGELE----PSEGKIKHSG----------RISFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSV 103 (229)
T ss_dssp HHHHHHTTSSC----CSEEEEEECS----------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHH
T ss_pred HHHHHHhCCCc----CCccEEEECC----------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHH
Confidence 67888888877 4899999998 38999999988875 999999764211 11 112233
Q ss_pred HHHcCCCc-----------cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 90 LKELGLLK-----------CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 90 l~~~~L~~-----------~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
++.+++.+ ..++++.+||||||||++|||||+.+|+++| |||||+|+|+.++..+
T Consensus 104 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll--LDEPts~LD~~~~~~i 169 (229)
T 2pze_A 104 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVLTEKEI 169 (229)
T ss_dssp HHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE--EESTTTTSCHHHHHHH
T ss_pred HHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE--EECcccCCCHHHHHHH
Confidence 44444432 2234568999999999999999999999888 9999999998765443
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.90 E-value=4.8e-24 Score=179.65 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=92.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++... ..++.+||+||++.+|+. |++||+.++.. . .. ..+++
T Consensus 384 Tll~~l~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~---~~----~~~~~ 450 (582)
T 3b5x_A 384 TIANLFTRFYD----VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-G---EY----TREQI 450 (582)
T ss_pred HHHHHHhcCCC----CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-C---CC----CHHHH
Confidence 56777777766 5899999999998542 346779999999998875 99999986521 0 11 12346
Q ss_pred HHHHHHcCCCccc-----------cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCK-----------NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~-----------~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+.. ++...+||||||||++||||++.+|+++| |||||+|+|+.+..
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill--lDEpts~LD~~~~~ 517 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI--LDEATSALDTESER 517 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHHH
Confidence 6777777665433 34457999999999999999999999888 99999999987543
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.89 E-value=6e-24 Score=179.43 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=93.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+. |++||+.++...+ .. ...+++
T Consensus 385 TLl~~l~g~~~----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~----~~~~~~ 453 (595)
T 2yl4_A 385 TVLSLLLRLYD----PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SS----VTAEEI 453 (595)
T ss_dssp HHHHHHTTSSC----CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TT----SCHHHH
T ss_pred HHHHHHhcCcC----CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cc----cCHHHH
Confidence 67888888877 5899999999998642 346779999999998874 9999998653210 00 113456
Q ss_pred HHHHHHcCCCcc-------ccC----ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKC-------KNS----VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~-------~~~----~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+. .++ ...+||||||||++||||++.+|+++| |||||+|+|+.+..
T Consensus 454 ~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ill--lDEpts~LD~~~~~ 520 (595)
T 2yl4_A 454 QRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILL--LDEATSALDAENEY 520 (595)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEE--EECCCSSCCHHHHH
T ss_pred HHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECcccCCCHHHHH
Confidence 777888876432 233 348999999999999999999999888 99999999987543
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.89 E-value=5.1e-24 Score=179.48 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=92.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+. |++||+.++.. . ... .+++
T Consensus 384 TLl~~l~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~---~~~----~~~~ 450 (582)
T 3b60_A 384 TIASLITRFYD----IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-E---EYS----REQI 450 (582)
T ss_dssp HHHHHHTTTTC----CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-S---CCC----HHHH
T ss_pred HHHHHHhhccC----CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-C---CCC----HHHH
Confidence 66777777776 5899999999998642 346679999999998875 99999986421 0 111 2346
Q ss_pred HHHHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++.+++.+. .++...+||||||||++||||++.+|+++| |||||+|+|+.+.
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill--lDEpts~LD~~~~ 516 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI--LDEATSALDTESE 516 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE--EETTTSSCCHHHH
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE--EECccccCCHHHH
Confidence 667777766433 344568999999999999999999999888 9999999998753
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.89 E-value=5.2e-24 Score=179.35 Aligned_cols=122 Identities=20% Similarity=0.173 Sum_probs=88.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||+++|..++...++|++|+|.++|.++... ..++.+||+||++.+|+. |++||+.++.. ... .+++
T Consensus 378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~ 447 (578)
T 4a82_A 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TAT----DEEV 447 (578)
T ss_dssp SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCC----HHHH
T ss_pred ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCC----HHHH
Confidence 3444444444444446999999999998643 356779999999998876 99999976421 111 1234
Q ss_pred HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++..++. ...+....+||||||||++||||++.+|+++| |||||+|+|+.+.
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill--lDEpts~LD~~~~ 513 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI--LDEATSALDLESE 513 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE--EESTTTTCCHHHH
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE--EECccccCCHHHH
Confidence 4555555443 23344557899999999999999999999888 9999999998743
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=3.3e-24 Score=180.85 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=88.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART- 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~- 85 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+. |++||+.++... .......+.
T Consensus 384 Tll~~l~g~~~----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~-----~~~~~~~~~~ 453 (587)
T 3qf4_A 384 TLMNLIPRLID----PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED-----ATDDEIVEAA 453 (587)
T ss_dssp HHHHTTTTSSC----CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS-----CCHHHHHHHH
T ss_pred HHHHHHhCCcc----CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC-----CCHHHHHHHH
Confidence 45566666655 6899999999998643 346779999999998865 999999754211 111111111
Q ss_pred ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+.+.++.+ |++...+++..+||||||||++||||++.+|+++| |||||+|+|+.+..
T Consensus 454 ~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill--lDEpts~LD~~~~~ 516 (587)
T 3qf4_A 454 KIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI--LDDCTSSVDPITEK 516 (587)
T ss_dssp HHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE--EESCCTTSCHHHHH
T ss_pred HHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence 11222222 44455577788999999999999999999999988 99999999987543
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=159.03 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=83.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|++.| ++|+|.++| .++|+||++.+ +..|+.||+.++... ..... +++.+
T Consensus 45 STLl~~l~Gl~~p----~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~~-~~~~~ 102 (237)
T 2cbz_A 45 SSLLSALLAEMDK----VEGHVAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPYY-RSVIQ 102 (237)
T ss_dssp HHHHHHHTTCSEE----EEEEEEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTHH-HHHHH
T ss_pred HHHHHHHhcCCCC----CCceEEECC----------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHHH-HHHHH
Confidence 3788888888875 899999998 38999999864 578999999764211 11111 11111
Q ss_pred ---HHHHcCCCc-----cccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhe
Q psy16753 89 ---LLKELGLLK-----CKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 89 ---~l~~~~L~~-----~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~ 145 (156)
+.+.+++.+ ..++++.+||||||||++|||||+.+|+++| |||||+|+|+.++..
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll--LDEPts~LD~~~~~~ 165 (237)
T 2cbz_A 103 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL--FDDPLSAVDAHVGKH 165 (237)
T ss_dssp HTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE--EESTTTTSCHHHHHH
T ss_pred HHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EeCcccccCHHHHHH
Confidence 223333321 3568899999999999999999999999988 999999999875443
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=8.8e-24 Score=178.59 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=89.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+ .|++||+.++... .. .+++
T Consensus 396 Tll~~l~g~~~----p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~-----~~----~~~~ 461 (598)
T 3qf4_B 396 TIVNLLMRFYD----VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPG-----AT----DEEI 461 (598)
T ss_dssp HHHHHHTTSSC----CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSSTT-----CC----TTHH
T ss_pred HHHHHHhcCcC----CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCCC-----CC----HHHH
Confidence 67778888777 5899999999998643 35677999999998886 4999999764211 11 1234
Q ss_pred HHHHHHcCCCcccc-----------CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 87 DALLKELGLLKCKN-----------SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 87 ~~~l~~~~L~~~~~-----------~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
.++++.+++.+..+ ....+||||||||++||||++.+|+++| |||||+|+|+.+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill--lDEpts~LD~~~~~ 528 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI--LDEATSNVDTKTEK 528 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE--ECCCCTTCCHHHHH
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE--EECCccCCCHHHHH
Confidence 45555555543333 3337899999999999999999999888 99999999986543
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.87 E-value=1.2e-22 Score=158.21 Aligned_cols=110 Identities=21% Similarity=0.177 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|++.| ++|+|.++| .++|+||++.+++. |+.||+. +. . ... ..+.+
T Consensus 78 STLlk~l~Gl~~p----~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~ 131 (290)
T 2bbs_A 78 TSLLMMIMGELEP----SEGKIKHSG----------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRS 131 (290)
T ss_dssp HHHHHHHTTSSCE----EEEEEECCS----------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHH
T ss_pred HHHHHHHhcCCCC----CCcEEEECC----------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHH
Confidence 3678888888774 899999988 38999999988775 9999986 31 1 111 11233
Q ss_pred HHHHcCCCcc-----------ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhhee
Q psy16753 89 LLKELGLLKC-----------KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146 (156)
Q Consensus 89 ~l~~~~L~~~-----------~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~~~ 146 (156)
.++.+++.+. .++.+.+||||||||++|||||+.+|+++| |||||+|+|+.++..+
T Consensus 132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll--LDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL--LDSPFGYLDVLTEKEI 198 (290)
T ss_dssp HHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHHHHH
T ss_pred HHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE--EECCcccCCHHHHHHH
Confidence 3444444322 233458999999999999999999999988 9999999998765443
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.85 E-value=9.2e-22 Score=166.44 Aligned_cols=113 Identities=22% Similarity=0.189 Sum_probs=91.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|++. |++|+|.+ ...+||+||+....+..|+.+++....... ....+++.+
T Consensus 396 STLlk~l~Gl~~----p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~ 454 (607)
T 3bk7_A 396 TTFVKMLAGVEE----PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTE 454 (607)
T ss_dssp HHHHHHHHTSSC----CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHH
T ss_pred HHHHHHHhcCCC----CCceEEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHH
Confidence 378888888877 48999975 235899999987777889988775431111 011346788
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|||+.++.
T Consensus 455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLl--LDEPt~~LD~~~~~ 508 (607)
T 3bk7_A 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL--LDEPSAYLDVEQRL 508 (607)
T ss_dssp THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE--EECTTTTCCHHHHH
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCccCCCHHHHH
Confidence 9999999988899999999999999999999999999888 99999999987543
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=9.2e-22 Score=177.83 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=87.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH-
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART- 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~- 85 (156)
|++++|+|++. |++|+|.++|.++... ..++.+|||+|++.+|+. |++||+.++... .......+.
T Consensus 431 Tl~~ll~g~~~----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~ 500 (1284)
T 3g5u_A 431 TTVQLMQRLYD----PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAV 500 (1284)
T ss_dssp HHHHHTTTSSC----CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHH
T ss_pred HHHHHHhCCCC----CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHH
Confidence 45555555555 6899999999998643 356779999999998876 999999876321 111111111
Q ss_pred ----HHHHHHHc--CCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 86 ----VDALLKEL--GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 86 ----~~~~l~~~--~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+.+.++.+ +++........+||||||||++||||++.+|+++| |||||+++|+.+.
T Consensus 501 ~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ili--LDEpts~LD~~~~ 562 (1284)
T 3g5u_A 501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL--LDEATSALDTESE 562 (1284)
T ss_dssp HHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEE--EESTTCSSCHHHH
T ss_pred HHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEE--EECCCCCCCHHHH
Confidence 12223333 22333455667899999999999999999999888 9999999998643
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=1.5e-21 Score=163.27 Aligned_cols=113 Identities=24% Similarity=0.202 Sum_probs=90.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.+ ...++|+||+....+..|+.+++........ ...+.+.+
T Consensus 326 STLlk~l~Gl~~----p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~ 384 (538)
T 1yqt_A 326 TTFVKMLAGVEE----PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTE 384 (538)
T ss_dssp HHHHHHHHTSSC----CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHH
T ss_pred HHHHHHHhCCCC----CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHH
Confidence 367888888877 48999975 1358999999877778899887654311110 01245778
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|+|+.++.
T Consensus 385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl--LDEPt~~LD~~~~~ 438 (538)
T 1yqt_A 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL--LDEPSAYLDVEQRL 438 (538)
T ss_dssp TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE--EECTTTTCCHHHHH
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EeCCcccCCHHHHH
Confidence 9999999888899999999999999999999999999888 99999999987543
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.84 E-value=4.3e-22 Score=180.36 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=91.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|.|++. |++|+|.+||.|+... .+|+++++|||++.+|+. |+++|+.++... .. ...+++
T Consensus 1120 TL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~----~sd~ei 1187 (1321)
T 4f4c_A 1120 TVVALLERFYD----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SS----VTMAQV 1187 (1321)
T ss_dssp SHHHHHTTSSC----CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TT----SCHHHH
T ss_pred HHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CC----CCHHHH
Confidence 45666666666 5899999999999753 468889999999999876 999999765311 11 122356
Q ss_pred HHHHHHcCCC-------ccccCcc----CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLL-------KCKNSVL----NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~-------~~~~~~~----~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.++++..++. +..|..+ .+||||||||++|||||+.+|+++| |||||+++|+.+.
T Consensus 1188 ~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILi--LDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1188 EEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL--LDEATSALDTESE 1253 (1321)
T ss_dssp HHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEE--EESCCCSTTSHHH
T ss_pred HHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEE--EeCccccCCHHHH
Confidence 6667776663 2334444 5699999999999999999999888 9999999998753
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=1.1e-21 Score=163.98 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=91.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++. |++|+|.+++. .++|++|+.......|+.+++.+..... .. .....+++
T Consensus 308 STLl~~l~Gl~~----p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~ 368 (538)
T 3ozx_A 308 TTFARILVGEIT----ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEE 368 (538)
T ss_dssp HHHHHHHTTSSC----CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHH
T ss_pred HHHHHHHhCCCC----CCCcEEEECCe---------eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHH
Confidence 367888888877 48999986543 4789999877666789999987531110 00 11235678
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+++.+..++++.+|||||||||+|||||+.+|+++| |||||+|+|+.++
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl--LDEPT~gLD~~~~ 421 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV--LDQPSSYLDVEER 421 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHH
T ss_pred HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EeCCccCCCHHHH
Confidence 8999999999999999999999999999999999999988 9999999998644
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.84 E-value=2e-21 Score=176.02 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=91.0
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
||+++|..++...+.|++|+|.++|.++... .+|+.+|||+|++.+|+. |++||+.++... .. .+++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~----~~~v 524 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----IT----REEM 524 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CC----HHHH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----ch----HHHH
Confidence 4555566666555567999999999998753 457889999999998865 999999876321 11 2345
Q ss_pred HHHHHHcCCC-----------ccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 87 DALLKELGLL-----------KCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~-----------~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++..++. ......-.+||||||||++||||+..+|+++| |||||+++|+.+
T Consensus 525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili--LDE~tSaLD~~t 589 (1321)
T 4f4c_A 525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL--LDEATSALDAES 589 (1321)
T ss_dssp HHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE--EESTTTTSCTTT
T ss_pred HHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE--EecccccCCHHH
Confidence 5555555542 22233446799999999999999999999988 999999999864
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=4.3e-21 Score=173.47 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=85.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
|++++|+|++. |++|+|.++|.++... ..++.++|+||++.+|+ .|++||+.++.... .... +.+
T Consensus 1074 Tl~~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i 1141 (1284)
T 3g5u_A 1074 TVVQLLERFYD----PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEI 1141 (1284)
T ss_dssp HHHHHHTTSSC----CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHH
T ss_pred HHHHHHhcCcC----CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHH
Confidence 55666666655 6899999999998643 35677999999998775 59999997542111 1111 223
Q ss_pred HHHHHHcCCCc-------cc----cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 87 DALLKELGLLK-------CK----NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 87 ~~~l~~~~L~~-------~~----~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.++..++.+ .. .....+||||||||++|||||+.+|+++| |||||+|+|+.+.
T Consensus 1142 ~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi--LDEpTs~lD~~~~ 1207 (1284)
T 3g5u_A 1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL--LDEATSALDTESE 1207 (1284)
T ss_dssp HHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE--EESCSSSCCHHHH
T ss_pred HHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE--EeCCcccCCHHHH
Confidence 33444444322 22 23346899999999999999999999998 9999999998643
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.2e-20 Score=155.24 Aligned_cols=113 Identities=18% Similarity=0.122 Sum_probs=87.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++++|+|++.| ++|+. +. ...++|+||+.......|+.+++... ... ... ....+.+
T Consensus 392 STLlk~l~Gl~~p----~~G~~------~~----~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~--~~~---~~~~~~~ 450 (608)
T 3j16_B 392 TTLIKLLAGALKP----DEGQD------IP----KLNVSMKPQKIAPKFPGTVRQLFFKK--IRG--QFL---NPQFQTD 450 (608)
T ss_dssp HHHHHHHHTSSCC----SBCCC------CC----SCCEEEECSSCCCCCCSBHHHHHHHH--CSS--TTT---SHHHHHH
T ss_pred HHHHHHHhcCCCC----CCCcC------cc----CCcEEEecccccccCCccHHHHHHHH--hhc--ccc---cHHHHHH
Confidence 3678888888875 78862 21 23589999997666667999876422 111 111 1235678
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|+|+.++.
T Consensus 451 ~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLl--LDEPT~gLD~~~~~ 504 (608)
T 3j16_B 451 VVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYL--IDEPSAYLDSEQRI 504 (608)
T ss_dssp THHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEE--ECCTTTTCCHHHHH
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE--EECCCCCCCHHHHH
Confidence 8999999999999999999999999999999999999988 99999999986443
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=2.6e-20 Score=157.58 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=86.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEE---------EECCEecCcc-----cccceeeEecCCCCCCC---CCCHHHHHHHHHHh
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQI---------LLNGLEVEKN-----LMVKVSGFVPQHDLTVD---TLTVHEHMTLMARL 71 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I---------~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~---~ltv~e~l~~~~~~ 71 (156)
.|++|+|+|++.| ++|++ .++|.++... ..+..+++++|....++ ..|+.+++..
T Consensus 131 STLlkiL~Gll~p----~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---- 202 (607)
T 3bk7_A 131 TTAVKILAGQLIP----NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK---- 202 (607)
T ss_dssp HHHHHHHTTSSCC----CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----
T ss_pred HHHHHHHhCCCCC----CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----
Confidence 3778888888774 78986 4566554221 11234678888643322 2378887642
Q ss_pred hcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
. . ..+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|||+.++
T Consensus 203 ~---~-----~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl--LDEPTs~LD~~~~ 264 (607)
T 3bk7_A 203 V---D-----EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF--FDEPSSYLDIRQR 264 (607)
T ss_dssp T---C-----CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EECTTTTCCHHHH
T ss_pred h---H-----HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence 1 0 11346788999999998999999999999999999999999999988 9999999998743
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=5.8e-20 Score=153.61 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=86.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEE---------EECCEecCcc-----cccceeeEecCCCCCCCC---CCHHHHHHHHHHh
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQI---------LLNGLEVEKN-----LMVKVSGFVPQHDLTVDT---LTVHEHMTLMARL 71 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I---------~~~G~~i~~~-----~~~~~ig~v~Q~~~~~~~---ltv~e~l~~~~~~ 71 (156)
.|++|+|+|++.| ++|++ .++|.++... .....+++++|....++. .++.+++...
T Consensus 61 STLlk~l~Gl~~p----~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~--- 133 (538)
T 1yqt_A 61 STAVKILAGQLIP----NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA--- 133 (538)
T ss_dssp HHHHHHHHTSSCC----CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---
T ss_pred HHHHHHHhCCCCC----CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---
Confidence 3788888888774 78985 3566554211 112346788887543321 2677765321
Q ss_pred hcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
. ..+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|||+.++
T Consensus 134 ----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLl--LDEPTs~LD~~~~ 194 (538)
T 1yqt_A 134 ----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYF--FDEPSSYLDIRQR 194 (538)
T ss_dssp ----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHH
T ss_pred ----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE--EECCcccCCHHHH
Confidence 0 11356788999999988999999999999999999999999999888 9999999998743
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.75 E-value=1.9e-19 Score=150.41 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=82.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEE-----------EECCEecCcc---------cccceeeEecCCCCCCCCCCHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQI-----------LLNGLEVEKN---------LMVKVSGFVPQHDLTVDTLTVHEHMTLM 68 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I-----------~~~G~~i~~~---------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~ 68 (156)
.|++|+|+|++.| ++|+| .++|.++... .....++++.+.+.++ ..++.+++...
T Consensus 39 STLlkiL~Gl~~p----~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~ 113 (538)
T 3ozx_A 39 TTVLKILAGEIIP----NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL-KGTVNEILTKI 113 (538)
T ss_dssp HHHHHHHTTSSCC----CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHH
T ss_pred HHHHHHHhcCCCC----CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc-cCcHHHHhhcc
Confidence 3788888888874 89998 6777665321 0111122333322222 23666543210
Q ss_pred HHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 69 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
...++++++++.+++....++++.+|||||||||+||+||+.+|+++| |||||+|||+.++.
T Consensus 114 ------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~ill--lDEPts~LD~~~~~ 175 (538)
T 3ozx_A 114 ------------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYI--FDQPSSYLDVRERM 175 (538)
T ss_dssp ------------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHHHHH
T ss_pred ------------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE--EECCcccCCHHHHH
Confidence 012346788999999999999999999999999999999999999888 99999999987543
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.70 E-value=1.4e-17 Score=142.17 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=48.7
Q ss_pred HHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCCCchhhh
Q psy16753 88 ALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 88 ~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~~~~~~~ 144 (156)
.+++.+++.+. .++++.+|||||||||+|||||+.+|+ ++| |||||+||||.++.
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLl--LDEPtsgLD~~~~~ 241 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYV--LDEPSIGLHQRDND 241 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEE--EECTTTTCCGGGHH
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEE--EECCccCCCHHHHH
Confidence 45888999765 689999999999999999999999998 887 99999999987543
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.68 E-value=2.1e-17 Score=145.42 Aligned_cols=58 Identities=24% Similarity=0.189 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCcc--ccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKC--KNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~--~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++++++.+|+... .++++.+||||||||+.||+||+.+|+++| |||||+|||+.+.
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLL--LDEPT~gLD~~s~ 937 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV--LDEPTNYLDRDSL 937 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEE--EECGGGTCCHHHH
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEE--EECCccCCCHHHH
Confidence 467889999999753 588999999999999999999999999888 9999999998753
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.1e-18 Score=144.11 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.+++.+..++++.+|||||||||+||+||+.+|+++| |||||+|||+.++
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~lll--lDEPts~LD~~~~ 257 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYM--FDEPSSYLDVKQR 257 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEE--EECTTTTCCHHHH
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEE--EECcccCCCHHHH
Confidence 468899999999999999999999999999999999999999888 9999999998754
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=1.1e-16 Score=140.90 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=72.3
Q ss_pred eeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCChHHHHHHHHHHHHhcC
Q psy16753 46 SGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQD 123 (156)
Q Consensus 46 ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGerqrv~LA~AL~~~ 123 (156)
++|++|+. ..++.+|+.+++.+ .. ... .+++.++++.+++. +..++++.+||||||||++||+||+.+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEEEcccccccccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 67888875 56788999999864 11 111 45688999999995 677999999999999999999999999
Q ss_pred CCeeEEecCCCCCCCCchhhh
Q psy16753 124 CSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 124 p~ill~~~Dep~~g~~~~~~~ 144 (156)
|+++| |||||+|||+.++.
T Consensus 567 P~lLL--LDEPTs~LD~~~~~ 585 (986)
T 2iw3_A 567 ADILL--LDEPTNHLDTVNVA 585 (986)
T ss_dssp CSEEE--EESTTTTCCHHHHH
T ss_pred CCEEE--EECCccCCCHHHHH
Confidence 99888 99999999987543
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.3e-18 Score=139.34 Aligned_cols=113 Identities=14% Similarity=0.002 Sum_probs=85.7
Q ss_pred HHHHHHHhhhhhcCCCCcce-E-EEECCEecCcccccceeeEecCCCCC---CCCCCHHHHHHHHHHhhcccCCcHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDG-Q-ILLNGLEVEKNLMVKVSGFVPQHDLT---VDTLTVHEHMTLMARLKMDRNLHHVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G-~-I~~~G~~i~~~~~~~~ig~v~Q~~~~---~~~ltv~e~l~~~~~~~~~~~~~~~~~~ 83 (156)
.|++|+|+|++.+ ++| + |+++|. .++.++++||+..+ .+.+++.+|+ ++.... .+. ...
T Consensus 152 STLlr~L~Gl~~p----~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~--~~~---~~~ 215 (460)
T 2npi_A 152 TSLSRTLCSYALK----FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLT--SGA---TLL 215 (460)
T ss_dssp HHHHHHHHHTTHH----HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCB--SSC---CSS
T ss_pred HHHHHHHhCcccc----cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhh-cccccc--cCc---chH
Confidence 3788999999885 899 8 999982 24568999998743 4456888877 432211 010 011
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHH--HhcCCCe----eEEecCC-CCCCCCch
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ--VSQDCSR----VVKITDS-QPRGKWPI 141 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~A--L~~~p~i----ll~~~De-p~~g~~~~ 141 (156)
+++.++++.+|+.+..+ +.+||||||||++||+| |+.+|++ +| +|| ||+|+|+.
T Consensus 216 ~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl--LDEpPts~LD~~ 276 (460)
T 2npi_A 216 HNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI--VDTPSISQLDEN 276 (460)
T ss_dssp CCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE--EECCCGGGSCSS
T ss_pred HHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEE--EeCCcccccChh
Confidence 23556788889887665 88999999999999999 9999999 88 999 99999985
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.51 E-value=6.4e-15 Score=125.83 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCCC---eeEEecCC
Q psy16753 58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDCS---RVVKITDS 133 (156)
Q Consensus 58 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p~---ill~~~De 133 (156)
.+|+.+++.+.... ...++..+.++.+++.. ..++++.+|||||||||+|||||+.+|+ ++| |||
T Consensus 504 ~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~lll--lDE 572 (670)
T 3ux8_A 504 DMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI--LDE 572 (670)
T ss_dssp TSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEE--EES
T ss_pred hCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEE--EeC
Confidence 46788887653211 11234567788899964 4688999999999999999999999874 777 999
Q ss_pred CCCCCCchhhh
Q psy16753 134 QPRGKWPISAL 144 (156)
Q Consensus 134 p~~g~~~~~~~ 144 (156)
||+||||.++.
T Consensus 573 Pt~~LD~~~~~ 583 (670)
T 3ux8_A 573 PTTGLHVDDIA 583 (670)
T ss_dssp TTTTCCHHHHH
T ss_pred CCCCCCHHHHH
Confidence 99999987543
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.49 E-value=2.7e-14 Score=125.33 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~~~~~~ 143 (156)
...+.+..+|+... .++++.+|||||||||.||+||+.+|+ ++| |||||+||||..+
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lll--LDEPT~gLD~~~~ 502 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYV--LDEPTIGLHPRDT 502 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEE--EECTTTTCCGGGH
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEE--EECCccCCCHHHH
Confidence 34467888999754 689999999999999999999999887 666 9999999998743
No 62
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.46 E-value=9.1e-17 Score=123.74 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=70.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|+..+ ++|+|.++|.++.....++.+++++|+..+++.+|+.+++.++..... ... .+.+.+
T Consensus 16 STLln~L~g~~~~----~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~----~~~i~~ 85 (270)
T 3sop_A 16 STLVNTLFKSQVS----RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC----WEPIEK 85 (270)
T ss_dssp HHHHHHHHHHHC----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC----SHHHHH
T ss_pred HHHHHHHhCCCCC----CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH----HHHHHH
Confidence 4789999999985 899999999988654445779999999988889999999877543221 101 112333
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++ ....+..+.+||||||||+.+|||++. ++ ++|||+.|+|+..
T Consensus 86 ~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---ll--lldep~~gL~~lD 130 (270)
T 3sop_A 86 YIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LY--FISPTGHSLRPLD 130 (270)
T ss_dssp HHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EE--EECCCSSSCCHHH
T ss_pred HHH----HHHHhhhHHhcCcccchhhhhheeeee---eE--EEecCCCcCCHHH
Confidence 333 334566778999999999999999774 34 5999999999764
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.45 E-value=2.6e-14 Score=124.43 Aligned_cols=58 Identities=28% Similarity=0.326 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcC---CCeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQD---CSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~---p~ill~~~Dep~~g~~~~~~ 143 (156)
+++.++++.++|.. ..++++.+|||||||||.||++|+.+ |+++| |||||+|+|+.+.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI--LDEPTsGLD~~~~ 769 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYV--LDEPTTGLHPADV 769 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEE--EECTTTTCCHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEE--EECCCCCCCHHHH
Confidence 46789999999986 46899999999999999999999997 68777 9999999997643
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.41 E-value=2.6e-13 Score=119.14 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCCCCCCCCchhh
Q psy16753 84 RTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 84 ~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~Dep~~g~~~~~~ 143 (156)
.+..+.++.+||.. ..++++.+|||||||||.||+||+.+| +++| |||||+|||+.+.
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLI--LDEPTsGLD~~~~ 844 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYI--LDEPTVGLHFEDV 844 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEE--EESTTTTCCHHHH
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEE--EECCCCCCCHHHH
Confidence 45678899999975 358899999999999999999999876 6777 9999999997643
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.41 E-value=2.2e-13 Score=119.61 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHhhcccC---Cc---HHHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCC--Cee
Q psy16753 57 DTLTVHEHMTLMARLKMDRN---LH---HVERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDC--SRV 127 (156)
Q Consensus 57 ~~ltv~e~l~~~~~~~~~~~---~~---~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p--~il 127 (156)
..+||.|++.|...+..... .. ..+..+++ +.++.+||... .++.+.+|||||+||+.||++|+.+| +++
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 45799999988655431110 00 01233444 45899999864 79999999999999999999999985 666
Q ss_pred EEecCCCCCCCCchhh
Q psy16753 128 VKITDSQPRGKWPISA 143 (156)
Q Consensus 128 l~~~Dep~~g~~~~~~ 143 (156)
| |||||+||||...
T Consensus 529 I--LDEPTagLdp~~~ 542 (972)
T 2r6f_A 529 V--LDEPSIGLHQRDN 542 (972)
T ss_dssp E--EECTTTTCCGGGH
T ss_pred E--EeCcccCCCHHHH
Confidence 5 9999999998753
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.41 E-value=1.2e-12 Score=105.36 Aligned_cols=34 Identities=38% Similarity=0.355 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCch
Q psy16753 106 LSGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPI 141 (156)
Q Consensus 106 LSgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~ 141 (156)
||||||||++||++|+.+| +++| |||||+|||+.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~Ll--LDEpt~~LD~~ 331 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVV--FDEVDAGIGGA 331 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEE--ESSTTTTCCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEE--EECCCCCCCHH
Confidence 5999999999999999999 9887 99999999976
No 67
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.38 E-value=1.7e-13 Score=96.66 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=37.7
Q ss_pred ccCccCcCChHHHHHHHHH------HHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 99 KNSVLNVLSGGERKRVALA------VQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 99 ~~~~~~~LSgGerqrv~LA------~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.++++.+||||||||++|| +|++.+|++++ +||||+|+|+.+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lll--LDEPt~~LD~~~ 98 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI--LDEPTPYLDEER 98 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEE--EESCSCTTCHHH
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEE--EECCCccCCHHH
Confidence 4678899999999999886 89999999888 999999999763
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.36 E-value=5.8e-13 Score=116.89 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~Dep~~g~~~~~~ 143 (156)
+..++++.++|.. ..++++.+|||||||||.||++|+.+| +++| |||||+|+|+.+.
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI--LDEPTsGLD~~~~ 884 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI--LDEPTTGLHVDDI 884 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEE--EECTTTTCCHHHH
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEE--EECCCCCCCHHHH
Confidence 4568899999987 679999999999999999999999875 8777 9999999997743
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.35 E-value=2e-15 Score=112.10 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=58.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHH-HHH----HHhhcccCCcHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHM-TLM----ARLKMDRNLHHVER 82 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l-~~~----~~~~~~~~~~~~~~ 82 (156)
|++++|+|+ .| ++|+|.. .++.. ...++.+||+||++ .+|+ .+. .... ... .
T Consensus 37 TLl~~l~Gl-~p----~~G~I~~--~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~--~~~----~ 95 (208)
T 3b85_A 37 YLAMAKAVQ-AL----QSKQVSR--IILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALR--DMV----E 95 (208)
T ss_dssp HHHHHHHHH-HH----HTTSCSE--EEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHT--TTS----C
T ss_pred HHHHHHhcC-CC----cCCeeee--EEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHH--Hhc----c
Confidence 789999999 75 8999942 22221 13356799999976 2333 111 0111 000 1
Q ss_pred HHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCC
Q psy16753 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRG 137 (156)
Q Consensus 83 ~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g 137 (156)
.+.+.++++. ++ |||||++|||||+.+|+++| |||||+|
T Consensus 96 ~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lll--LDEPts~ 134 (208)
T 3b85_A 96 PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVI--LDEAQNT 134 (208)
T ss_dssp TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEE--ECSGGGC
T ss_pred HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEE--EeCCccc
Confidence 1245566665 43 99999999999999999888 9999999
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.34 E-value=3.2e-15 Score=121.26 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=79.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
.|++|+|+|++.+ ++|+|.++|.+.+. .++++|++ .++.+++.|+..+.. . ...+.+
T Consensus 83 STLln~L~Gl~~p----~~GsI~~~g~~~t~------~~~v~q~~-~~~~ltv~D~~g~~~------~------~~~~~~ 139 (413)
T 1tq4_A 83 SSFINTLRGIGNE----EEGAAKTGVVEVTM------ERHPYKHP-NIPNVVFWDLPGIGS------T------NFPPDT 139 (413)
T ss_dssp HHHHHHHHTCCTT----STTSCCCCC----C------CCEEEECS-SCTTEEEEECCCGGG------S------SCCHHH
T ss_pred HHHHHHHhCCCCc----cCceEEECCeecce------eEEecccc-ccCCeeehHhhcccc------h------HHHHHH
Confidence 3788999998874 89999999987642 27888875 466777777653221 0 124678
Q ss_pred HHHHcCCCccccCccCcCChH--HHHHHHHHHHHhc----------CCCeeEEecCCCCCCCCchhhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGG--ERKRVALAVQVSQ----------DCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgG--erqrv~LA~AL~~----------~p~ill~~~Dep~~g~~~~~~~ 144 (156)
+++.+++.+. +..+. +|+| |+||+.||+|++. +|++++ +||||+|+|+.++.
T Consensus 140 ~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll--LDEPtsgLD~~~~~ 203 (413)
T 1tq4_A 140 YLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI--TNEADGEPQTFDKE 203 (413)
T ss_dssp HHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH--HHHHTTCCTTCCHH
T ss_pred HHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc--cCcccccCCHHHHH
Confidence 8999998754 33344 9999 9999999999999 888776 99999999987543
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.32 E-value=4.1e-13 Score=117.00 Aligned_cols=59 Identities=29% Similarity=0.321 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCCCchhh
Q psy16753 82 RARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGKWPISA 143 (156)
Q Consensus 82 ~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~~~~~~ 143 (156)
..++++ .++.+|+... .++.+.+|||||+|||.||++|+.+|+ ++| |||||+||||...
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llI--LDEPT~~Ld~~~~ 417 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYV--LDEPSAGLHPADT 417 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEE--EECTTTTCCGGGH
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEE--eeCccccCCHHHH
Confidence 445565 6889999865 799999999999999999999999995 665 9999999998753
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.32 E-value=1.2e-12 Score=115.22 Aligned_cols=57 Identities=25% Similarity=0.228 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHHHHhcCC---CeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLK-CKNSVLNVLSGGERKRVALAVQVSQDC---SRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~AL~~~p---~ill~~~Dep~~g~~~~~~ 143 (156)
+..++++.++|.. ..++++.+|||||||||.||++|+.+| +++| |||||+|+|+.+.
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI--LDEPTsGLD~~~~ 902 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYI--LDEPTTGLHFDDI 902 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEE--EESTTTTCCHHHH
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEE--EECCCCCCCHHHH
Confidence 4568899999986 678999999999999999999999875 8777 9999999997643
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.27 E-value=2.2e-12 Score=113.50 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHhhcccCCcH----------HHHHHHHHHHHHHcCCCcc-ccCccCcCChHHHHHHHHHHHHhcC
Q psy16753 55 TVDTLTVHEHMTLMARLKMDRNLHH----------VERARTVDALLKELGLLKC-KNSVLNVLSGGERKRVALAVQVSQD 123 (156)
Q Consensus 55 ~~~~ltv~e~l~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGerqrv~LA~AL~~~ 123 (156)
.+..+|+.+.+.|...+. ++. .+..+++ +.++.+||... .++.+.+|||||+||+.||++|+.+
T Consensus 465 q~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 465 EVCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp CSSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 345678888887744332 122 2233344 45888999764 7999999999999999999999999
Q ss_pred C--CeeEEecCCCCCCCCchhh
Q psy16753 124 C--SRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 124 p--~ill~~~Dep~~g~~~~~~ 143 (156)
| +++| |||||+||||...
T Consensus 540 ~~~~llI--LDEPTagLdp~~~ 559 (993)
T 2ygr_A 540 LVGVLYV--LDEPSIGLHQRDN 559 (993)
T ss_dssp CCSCEEE--EECTTTTCCHHHH
T ss_pred CCCcEEE--EeCcccCCCHHHH
Confidence 5 6665 9999999998743
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.27 E-value=8.7e-14 Score=108.65 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=87.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cc--cceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LM--VKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~--~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~ 78 (156)
.|++++|+|++.+ ++|+|.+.|.++.+. .+ +..++|++|+.. .++..++.+++.++... ...
T Consensus 114 TTll~~Lag~l~~----~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~----~~d 185 (302)
T 3b9q_A 114 TTSLGKLAHRLKN----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE----GYD 185 (302)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHT----TCS
T ss_pred HHHHHHHHHHHHH----cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHc----CCc
Confidence 3788999999885 799999999987542 12 245899999987 77888899998765321 100
Q ss_pred HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.+|+.+..++++.+|| +||+.||+|++.+|+-.++++| ||+|+|+..+.
T Consensus 186 --------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~ 239 (302)
T 3b9q_A 186 --------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 239 (302)
T ss_dssp --------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred --------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence 134677788777788889999 9999999999999994444499 99999987553
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.23 E-value=3.5e-13 Score=107.54 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=88.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cc--cceeeEecCCCC-CCCCCCHHHHHHHHHHhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LM--VKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~--~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~~~ 78 (156)
.|++++|+|++.+ ++|+|.+.|.++.+. .+ +..++|++|+.. .++..++.+++.++... ...
T Consensus 171 TTll~~Lag~l~~----~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~----~~d 242 (359)
T 2og2_A 171 TTSLGKLAHRLKN----EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEE----GYD 242 (359)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHT----TCS
T ss_pred HHHHHHHHhhccc----cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhC----CCH
Confidence 3788999999885 799999999987542 12 345899999987 77888899998765321 110
Q ss_pred HHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhhh
Q psy16753 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISAL 144 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~~ 144 (156)
..+++.+|+.+..++++.+|| +||+.||+|++.+|+-.++++| ||+|+|+..+.
T Consensus 243 --------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 243 --------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp --------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred --------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 134667788777778888999 9999999999999994444599 99999987553
No 76
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.23 E-value=3.2e-12 Score=102.06 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=38.2
Q ss_pred cCccCcCChHHHHHHHHHHHHh------cCCCeeEEecCCCCCCCCchhh
Q psy16753 100 NSVLNVLSGGERKRVALAVQVS------QDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~------~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++++.+||||||||++||+||+ .+|+++| |||||+|+||.++
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~ll--lDEpt~~LD~~~~ 321 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFF--IDEGFSSLDTENK 321 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEE--EESCCTTSCHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEE--EeCCCccCCHHHH
Confidence 5788999999999999999999 7999888 9999999998744
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.21 E-value=5.7e-14 Score=110.18 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=76.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (156)
|++++|+|++.+ +.|. ..+++++|+..+++. |+.+++.+... .+.......+.+.+.
T Consensus 105 TL~~~L~gll~~----~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~~~d~~~~~~~ 161 (312)
T 3aez_A 105 TTARVLQALLAR----WDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPESYNRRALMRF 161 (312)
T ss_dssp HHHHHHHHHHHT----STTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGGGBCHHHHHHH
T ss_pred HHHHHHHhhccc----cCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCChHHHHHHHHHH
Confidence 567777777764 3442 358999999888887 89888753211 111112223456778
Q ss_pred HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 90 LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 90 l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
++.++ ....+.++..|||||+||+++|+|++.+|+++| +|||+...|
T Consensus 162 L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilI--lDep~~~~d 208 (312)
T 3aez_A 162 VTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILI--LEGLNVLQT 208 (312)
T ss_dssp HHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEE--EECTTTTCC
T ss_pred HHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEE--ECCccccCC
Confidence 88887 545567788999999999999999999999887 999999986
No 78
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.17 E-value=1.6e-11 Score=88.59 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=34.8
Q ss_pred cCccCcCChHHHHHHHHHHHHhc----CCCeeEEecCCCCCCCCch
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQ----DCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~----~p~ill~~~Dep~~g~~~~ 141 (156)
.+.+..||||||||++||++++. +|+++| ||||++|+|+.
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~ll--LDEp~a~LD~~ 102 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYL--FDEIDAHLDDA 102 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEE--EESTTTTCCHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEE--ECCCccCCCHH
Confidence 45678999999999999999974 468777 99999999975
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.05 E-value=9.7e-11 Score=91.79 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=36.9
Q ss_pred ccCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCch
Q psy16753 99 KNSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 99 ~~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~ 141 (156)
.++++.+||+|||||++||+||+ .+|+++| |||||+|+|+.
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~ll--lDEp~~~LD~~ 257 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYV--LDEVDSPLDDY 257 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEE--EESCCSSCCHH
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCHH
Confidence 56778999999999999999997 5788887 99999999976
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.04 E-value=4.9e-11 Score=94.15 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=35.8
Q ss_pred ccCccCcCChHHHH------HHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 99 KNSVLNVLSGGERK------RVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 99 ~~~~~~~LSgGerq------rv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
.++++.+||||||| |+++|+|++.+|+++| |||||+|+||.
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~ll--lDEp~~~LD~~ 288 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI--LDEPTPYLDEE 288 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEE--EECCCTTCCHH
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEE--EECCCCCCCHH
Confidence 46778999999999 5677788888999887 99999999975
No 81
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.03 E-value=5.3e-11 Score=86.07 Aligned_cols=44 Identities=9% Similarity=-0.150 Sum_probs=39.3
Q ss_pred ccccCccCcCChHHHHHHHHHHH-----HhcCCCeeEEecCC--CCCCCCchh
Q psy16753 97 KCKNSVLNVLSGGERKRVALAVQ-----VSQDCSRVVKITDS--QPRGKWPIS 142 (156)
Q Consensus 97 ~~~~~~~~~LSgGerqrv~LA~A-----L~~~p~ill~~~De--p~~g~~~~~ 142 (156)
+..++++.+||||||||++||+| ++.+|+++| +|| ||+++|+..
T Consensus 68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~lli--lDEigp~~~ld~~~ 118 (178)
T 1ye8_A 68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII--IDEIGKMELFSKKF 118 (178)
T ss_dssp SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEE--ECCCSTTGGGCHHH
T ss_pred ccccccccCcCHHHHHHHHHHhhccccccccCCCEEE--EeCCCCcccCCHHH
Confidence 35678889999999999999996 999999887 999 999999753
No 82
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.02 E-value=1.3e-10 Score=96.48 Aligned_cols=41 Identities=37% Similarity=0.353 Sum_probs=36.6
Q ss_pred CccCcC-ChHHHHHHHHHHHHhcCC--CeeEEecCCCCCCCCchhh
Q psy16753 101 SVLNVL-SGGERKRVALAVQVSQDC--SRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 101 ~~~~~L-SgGerqrv~LA~AL~~~p--~ill~~~Dep~~g~~~~~~ 143 (156)
+++.+| ||||+||++||+|++.+| +++| +||||+|+|+.++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~li--lDEp~~gld~~~~ 435 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVV--FDEVDAGIGGAAA 435 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEE--ECSCSSSCCTHHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEE--EeCCcCCCCHHHH
Confidence 456777 999999999999999999 9887 9999999998743
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.91 E-value=2.8e-10 Score=90.77 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=36.3
Q ss_pred cCccC-cCChHHHHHHHHHHHHh---------cCCCeeEEecCCCCCCCCch
Q psy16753 100 NSVLN-VLSGGERKRVALAVQVS---------QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~-~LSgGerqrv~LA~AL~---------~~p~ill~~~Dep~~g~~~~ 141 (156)
+++++ .||+|||||++||++|+ .+|+++| |||||+|+|+.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLL--LDEp~s~LD~~ 308 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLL--LDDFTAELDPH 308 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEE--ECCGGGCCCHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEE--EeCccccCCHH
Confidence 45566 79999999999999999 8999888 99999999976
No 84
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.82 E-value=5.7e-09 Score=83.22 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=33.8
Q ss_pred CccCcCChHHHHHHH------HHHHHhcC-CCeeEEecCCCCCCCCch
Q psy16753 101 SVLNVLSGGERKRVA------LAVQVSQD-CSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 101 ~~~~~LSgGerqrv~------LA~AL~~~-p~ill~~~Dep~~g~~~~ 141 (156)
.++..|||||+||++ +|++++.+ |+++| +||||+|+|+.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~ll--lDEp~~~LD~~ 321 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECII--LDEPTVYLDEN 321 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEE--EESTTTTCCHH
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEE--EeCCCCcCCHH
Confidence 556789999999884 56888999 99887 99999999965
No 85
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.79 E-value=4.3e-10 Score=87.79 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=76.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------c--cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------M--VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~--~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~ 79 (156)
.|++++|+|++.+ ++|+|.+.|.++.+.. + +..+++++|+...++..++.+++.+..... ..
T Consensus 116 TTll~~Lagll~~----~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~----~d- 186 (304)
T 1rj9_A 116 TTTIAKLGRYYQN----LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARG----YD- 186 (304)
T ss_dssp HHHHHHHHHHHHT----TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHT----CS-
T ss_pred HHHHHHHHHHHHh----cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCC----CC-
Confidence 3788899999885 7999999999875321 1 345899999988777778888876542110 00
Q ss_pred HHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 80 ~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+++..|..+..+.. ++...+||+.||||++.+|+.+++.+| |+.|.+..
T Consensus 187 -------~~llDt~G~~~~~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~ 237 (304)
T 1rj9_A 187 -------LLFVDTAGRLHTKHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL 237 (304)
T ss_dssp -------EEEECCCCCCTTCHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH
T ss_pred -------EEEecCCCCCCchHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH
Confidence 0123334443322233 444558999999999999998887899 67776533
No 86
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.75 E-value=5.8e-09 Score=84.59 Aligned_cols=40 Identities=28% Similarity=0.205 Sum_probs=34.9
Q ss_pred cCccCcCChHHHHHHHHHHHHh----cCCCeeEEecCCCCCCCCch
Q psy16753 100 NSVLNVLSGGERKRVALAVQVS----QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~----~~p~ill~~~Dep~~g~~~~ 141 (156)
.+++..|||||||+++||++|+ .+|+++| ||||++|||+.
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~ll--lDEp~~~LD~~ 371 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFV--LDEVDAALDIT 371 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEE--ESSTTTTCCHH
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEE--eCCCcccCCHH
Confidence 3456679999999999999999 5788887 99999999975
No 87
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=2.2e-09 Score=76.72 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=38.4
Q ss_pred HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
..+.....+ .....|+|+|||++||+|++.+|++++ +||||+|+|+..
T Consensus 71 ~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~ll--lDEPt~~Ld~~~ 118 (171)
T 4gp7_A 71 QLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVV--FNLPEKVCQERN 118 (171)
T ss_dssp HTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEE--ECCCHHHHHHHH
T ss_pred hCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEE--EeCCHHHHHHHH
Confidence 345544443 334569999999999999999999887 999999999873
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.59 E-value=2.5e-10 Score=89.16 Aligned_cols=75 Identities=8% Similarity=-0.032 Sum_probs=48.2
Q ss_pred eEecCCCCCCCCCCHHH-HHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCC
Q psy16753 47 GFVPQHDLTVDTLTVHE-HMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS 125 (156)
Q Consensus 47 g~v~Q~~~~~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ 125 (156)
++++|.+.++.. |+.+ |+.+.. ... ..+.+.++.+ +....+ ...|||||||| |||++.+|+
T Consensus 156 ~~v~q~~~lf~~-ti~~~ni~~~~------~~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~ 217 (305)
T 2v9p_A 156 SFANHKSHFWLA-SLADTRAALVD------DAT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPP 217 (305)
T ss_dssp CGGGTTSGGGGG-GGTTCSCEEEE------EEC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCC
T ss_pred EEecCccccccc-cHHHHhhccCc------ccc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCC
Confidence 466777666543 5554 543310 011 1334455554 444444 77899999999 999999999
Q ss_pred eeEEecCCCCCCCCchhhhe
Q psy16753 126 RVVKITDSQPRGKWPISALF 145 (156)
Q Consensus 126 ill~~~Dep~~g~~~~~~~~ 145 (156)
++| |+++|+.+...
T Consensus 218 iLl------Ts~LD~~~~~~ 231 (305)
T 2v9p_A 218 LLV------TSNIDVQAEDR 231 (305)
T ss_dssp EEE------EESSCSTTCGG
T ss_pred EEE------ECCCCHHHHHH
Confidence 875 99999876543
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.54 E-value=5.8e-08 Score=76.42 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEecCCCCC
Q psy16753 108 GGERKRVALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 108 gGerqrv~LA~AL~~~p~ill~~~Dep~~ 136 (156)
||++||+.||+||..+|+++| +|||++
T Consensus 225 gg~~~r~~la~aL~~~p~ili--ldE~~~ 251 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRII--LGELRS 251 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEE--ECCCCS
T ss_pred CChhHHHHHHHHhhhCCCEEE--EcCCCh
Confidence 899999999999999999888 999997
No 90
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.47 E-value=9e-11 Score=91.38 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=52.5
Q ss_pred HHHHHHHhhh-hhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQR-VVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~-~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|. .. |++| |.++|.++......+.+++++|.......++++++..++..... .+...
T Consensus 32 STLl~~L~g~~~~----~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~---------~e~~~ 97 (301)
T 2qnr_A 32 STLINSLFLTDLY----PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC---------RDCFK 97 (301)
T ss_dssp HHHHHHHHC-----------------------------CEEEEC---CCEEEEEEEEC--------------------CT
T ss_pred HHHHHHHhCCCcc----CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc---------HHHHH
Confidence 3778888886 44 4788 88888776432223457888988766667777777655322110 00011
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCC-CCCchh
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPR-GKWPIS 142 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~-g~~~~~ 142 (156)
.+.+. +.+..+++++++|||+|||+.+|+|++ ++++|||++ |+|+..
T Consensus 98 ~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~------ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 98 TIISY--IDEQFERYLHDESGLNRRHIIDNRVHC------CFYFISPFGHGLKPLD 145 (301)
T ss_dssp THHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE------EEEEECSSSSSCCHHH
T ss_pred HHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh------eeeeecCcccCCCHHH
Confidence 11111 112345778899999999998888874 335999998 599864
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.47 E-value=3.1e-09 Score=79.92 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=65.6
Q ss_pred cceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhc
Q psy16753 43 VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQ 122 (156)
Q Consensus 43 ~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~ 122 (156)
++.+++++|+. +++.+++.+++.+......... ......+.+.+.++.+ .+..+.++..||+|++||+.+ ++++.
T Consensus 58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~ 132 (245)
T 2jeo_A 58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVY 132 (245)
T ss_dssp GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEEC
T ss_pred CCceEEEeCCc-CccccCHhHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEec
Confidence 55688999985 6678899988765432211000 0111122344455543 344567888999999999988 57888
Q ss_pred CCCeeEEecCCCCCCCC------chhhheeeccc
Q psy16753 123 DCSRVVKITDSQPRGKW------PISALFITTAS 150 (156)
Q Consensus 123 ~p~ill~~~Dep~~g~~------~~~~~~~~~~~ 150 (156)
+|+++| +|||....+ ...++.++++.
T Consensus 133 ~~~~li--lDg~~~~~~~~l~~~~~~~i~v~th~ 164 (245)
T 2jeo_A 133 PADVVL--FEGILVFYSQEIRDMFHLRLFVDTDS 164 (245)
T ss_dssp CCSEEE--EECTTTTTSHHHHTTCSEEEEEECCH
T ss_pred CCCEEE--EeCccccccHHHHHhcCeEEEEECCH
Confidence 999887 999988765 23456666554
No 92
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.38 E-value=3.9e-08 Score=78.28 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=66.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEEC-CEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLN-GLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~-G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
|++|+|+|.... ++.|+|.++ |..... .....+++++|...+++..++.++. + .........+.+.+
T Consensus 230 TLln~L~g~~~~---~~~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~~-----l---~~l~~~e~~~~~~e 297 (358)
T 2rcn_A 230 SLLNALLGLQNE---ILTNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREFG-----L---WHLEPEQITQGFVE 297 (358)
T ss_dssp HHHHHHHCCSSC---CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----C---CCCCHHHHHHTSGG
T ss_pred HHHHHHhccccc---cccCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHhh-----h---cCCCHHHHHHHHHH
Confidence 677777777661 479999987 655421 2345689999988777777776631 1 12334445566788
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcC
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~ 123 (156)
+++.+++.+..++...++| |++||++||++++..
T Consensus 298 ~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~ 331 (358)
T 2rcn_A 298 FHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAE 331 (358)
T ss_dssp GGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCH
T ss_pred HHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCH
Confidence 8999999988999999999 999999999987643
No 93
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.31 E-value=1.7e-11 Score=91.18 Aligned_cols=113 Identities=6% Similarity=-0.094 Sum_probs=67.4
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc----cccceeeEecCCCCCCCCCCH-HHHHHHHHHhh-cccCCcHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN----LMVKVSGFVPQHDLTVDTLTV-HEHMTLMARLK-MDRNLHHVERA 83 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----~~~~~ig~v~Q~~~~~~~ltv-~e~l~~~~~~~-~~~~~~~~~~~ 83 (156)
|++++|+|++ | |+|.+ |.+++.. ..++.++|+||++..|+.++. .+++.+ ..+. ...+.. .
T Consensus 38 TLl~~L~g~~-----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~g~~----~ 104 (218)
T 1z6g_A 38 TLIKKLLNEF-----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEY-DNYANNFYGTL----K 104 (218)
T ss_dssp HHHHHHHHHS-----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEE-EEETTEEEEEE----H
T ss_pred HHHHHHHhhC-----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhh-hhcccccCCCc----H
Confidence 5677777754 2 88999 8766422 124567899997655432210 000000 0000 001111 1
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHH-----HHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVAL-----AVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~L-----A~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..++++++...+. ..+ .++||||+||+++ +++++.+|++++ ||||++++|..
T Consensus 105 ~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~--Lde~~~~~d~~ 161 (218)
T 1z6g_A 105 SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDV--LLSRLLTRNTE 161 (218)
T ss_dssp HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHH--HHHHHHHTCCC
T ss_pred HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH--HHHHHHhcCCC
Confidence 2455666654431 222 5799999999999 788998898876 99999999864
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.21 E-value=2.8e-09 Score=77.94 Aligned_cols=85 Identities=12% Similarity=-0.050 Sum_probs=61.0
Q ss_pred eeeEecCCCCCC--CCCCHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHH----HHHHHHH
Q psy16753 45 VSGFVPQHDLTV--DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGER----KRVALAV 118 (156)
Q Consensus 45 ~ig~v~Q~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGer----qrv~LA~ 118 (156)
.+++++|+...+ ..+++.++..+.. .. ......+.+.+.++.+++.+..+.++.++|+|++ ||+.+|+
T Consensus 33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~ 106 (211)
T 3asz_A 33 RVALLPMDHYYKDLGHLPLEERLRVNY--DH----PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAP 106 (211)
T ss_dssp GEEEEEGGGCBCCCTTSCHHHHHHSCT--TS----GGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCS
T ss_pred CeEEEecCccccCcccccHHHhcCCCC--CC----hhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCc
Confidence 378899987665 4578877654321 11 1111234566778888887777778899999974 6888889
Q ss_pred HHhcCCCeeEEecCCCCCC
Q psy16753 119 QVSQDCSRVVKITDSQPRG 137 (156)
Q Consensus 119 AL~~~p~ill~~~Dep~~g 137 (156)
+++.+|.+++ +|||+++
T Consensus 107 ~li~~~~ll~--~de~~~~ 123 (211)
T 3asz_A 107 VVILEGILVL--YPKELRD 123 (211)
T ss_dssp EEEEESTTTT--SSHHHHT
T ss_pred EEEEeehhhc--cCHHHHH
Confidence 9999998876 8999999
No 95
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=2.5e-08 Score=84.46 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=37.5
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC--c----ccccceeeEecCCCCCCCCCCHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE--K----NLMVKVSGFVPQHDLTVDTLTVHEHMTLMA 69 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~--~----~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~ 69 (156)
.|++++|+|+..| +++|.|+++|.++. . ..++..++|++|+..+++..++.+++.+..
T Consensus 59 STLL~~I~Gl~~P---~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 59 SSVLEALSGVALP---RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp HHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred HHHHHHHhCCCCC---CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 3788888888654 26999999999852 1 245678999999998888888988887653
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.15 E-value=5.6e-07 Score=74.73 Aligned_cols=47 Identities=11% Similarity=-0.062 Sum_probs=42.1
Q ss_pred HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..++....+..+.+||+||+||+.+|+++..+|+++| +| |++|+|+.
T Consensus 340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~lli--lD-p~~~Ld~~ 386 (525)
T 1tf7_A 340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIA--ID-SLSALARG 386 (525)
T ss_dssp HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEE--EE-CHHHHTSS
T ss_pred hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEE--Ec-ChHHHHhh
Confidence 4566666778889999999999999999999999888 99 99999986
No 97
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.12 E-value=3.6e-07 Score=74.58 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=67.1
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCE---ecCc--------ccccceeeEecCC-CCCCCCCCHHHHHHHHHHhhcccCC
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGL---EVEK--------NLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNL 77 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~---~i~~--------~~~~~~ig~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~~ 77 (156)
|++++|+|+..+ +.|.|.+.|+ ++.. ..+++.++|++|+ ...++.+++.+++.+...+....
T Consensus 172 TLl~~Iag~~~~----~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-- 245 (438)
T 2dpy_A 172 VLLGMMARYTRA----DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-- 245 (438)
T ss_dssp HHHHHHHHHSCC----SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcccCC----CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 678888888774 8999999998 4432 1245678999996 34456677777776654321100
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.-......+ .+..||+|| ||++|| +.+|++ |+|+||...
T Consensus 246 --------------~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~--------t~glD~~~~ 284 (438)
T 2dpy_A 246 --------------GQHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA--------TKGYPPSVF 284 (438)
T ss_dssp --------------TCEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC--------SSSCCTTHH
T ss_pred --------------CCCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc--------cccCCHHHH
Confidence 001111122 267799999 999999 888875 899997643
No 98
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.05 E-value=2.1e-10 Score=84.21 Aligned_cols=113 Identities=8% Similarity=-0.047 Sum_probs=64.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhh---cccCCcHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK---MDRNLHHVERART 85 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~ 85 (156)
.|++++|+|++.. ..+.+.+.+.+.. ...++.++|+||++..++.+++.+++....... ...+.......++
T Consensus 34 STLl~~l~gl~~~----i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~ 108 (207)
T 1znw_A 34 STVVRCLRERIPN----LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 108 (207)
T ss_dssp HHHHHHHHHHSTT----CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHH
T ss_pred HHHHHHHHhhCCc----eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHH
Confidence 3788999998752 2222211111111 122456899999876655555554432110000 0011223334445
Q ss_pred HHHH------HHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 86 VDAL------LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 86 ~~~~------l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
+.+. ++.+++....++++..|| +|+.+|++++ ||||++|++
T Consensus 109 ~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~--LDep~~~l~ 155 (207)
T 1znw_A 109 AATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQD--LQARLIGRG 155 (207)
T ss_dssp HHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHH--HHHHHHTTS
T ss_pred HHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHH--HHHHHHhcC
Confidence 5554 556666666677778888 8999999887 999999984
No 99
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.00 E-value=1.2e-07 Score=73.76 Aligned_cols=101 Identities=12% Similarity=-0.022 Sum_probs=63.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEE---CCEecCccc--cc-ceeeEecCCCCCC-----CCCCHHHHH--HHHH------H
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILL---NGLEVEKNL--MV-KVSGFVPQHDLTV-----DTLTVHEHM--TLMA------R 70 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~~--~~-~~ig~v~Q~~~~~-----~~ltv~e~l--~~~~------~ 70 (156)
|++|+|+ +.. |++|+|.+ +|.+++... .+ ..+||++|.+.+. +.+|+ +++ .|.. .
T Consensus 180 TLln~l~-~~~----~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~ 253 (302)
T 2yv5_A 180 SILSRLT-GEE----LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCK 253 (302)
T ss_dssp HHHHHHH-SCC----CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHH
T ss_pred HHHHHHH-Hhh----CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCC
Confidence 5666666 544 68999999 898876431 11 2579999998543 67788 776 3320 1
Q ss_pred hhcccCCcHHHHHHHHHHHHHHcCCCc-cccCccCcCChHHHHHHHHHH
Q psy16753 71 LKMDRNLHHVERARTVDALLKELGLLK-CKNSVLNVLSGGERKRVALAV 118 (156)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGerqrv~LA~ 118 (156)
++. ..+......++.++++.++|.+ ..++++..|||..+|+++|||
T Consensus 254 ~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 254 YPD--CTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp STT--CCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 0111223356889999999986 678899999999999999886
No 100
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.86 E-value=5.9e-08 Score=69.63 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=51.8
Q ss_pred HHHHHHhhhhhcCCCCc---ceEEEECCEecCc------cccc-ceee----EecCCCCCCCCCCHHHHHHHHHHhhccc
Q psy16753 10 SGIHLLGQRVVHELSDV---DGQILLNGLEVEK------NLMV-KVSG----FVPQHDLTVDTLTVHEHMTLMARLKMDR 75 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~---~G~I~~~G~~i~~------~~~~-~~ig----~v~Q~~~~~~~ltv~e~l~~~~~~~~~~ 75 (156)
|+++.|+|++.+ + .|.|.++|.++.. ..++ +.+| +++|+...|-. +
T Consensus 17 TL~~~L~~~~~~----~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~----~------------ 76 (171)
T 2f1r_A 17 TLITRMMPILRE----RGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIR----R------------ 76 (171)
T ss_dssp HHHHHHHHHHHH----TTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEE----E------------
T ss_pred HHHHHHHHHhhh----cCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEe----c------------
Confidence 567777777775 5 7999999987432 1233 3466 77777654400 0
Q ss_pred CCcHHHHHHHHHHHHHH-c-CCCccccCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753 76 NLHHVERARTVDALLKE-L-GLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV 127 (156)
Q Consensus 76 ~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il 127 (156)
. ... ....+.++++. + +++... ...|||||+||++||||++.+|++.
T Consensus 77 ~-~~~-~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 V-SEE-EGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp C-CHH-HHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred C-Chh-hhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccC
Confidence 0 000 01123344444 3 332221 2349999999999999999999863
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.85 E-value=4.4e-06 Score=73.65 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=36.3
Q ss_pred HHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
++..+++.+...+....+|+||+|++.++++ +.+|+++| ||||++|+||...
T Consensus 719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlL--LDEP~~GlD~~~~ 770 (918)
T 3thx_B 719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVI--LDELGRGTSTHDG 770 (918)
T ss_dssp EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEE--EESTTTTSCHHHH
T ss_pred HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEE--EeCCCCCCCHHHH
Confidence 4555666666677788999999999999999 89999887 9999999998643
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.82 E-value=2.3e-06 Score=74.15 Aligned_cols=36 Identities=14% Similarity=-0.044 Sum_probs=31.0
Q ss_pred cCChHHHHHHHHHHHH--hcCCCeeEEecCCC---CCCCCchh
Q psy16753 105 VLSGGERKRVALAVQV--SQDCSRVVKITDSQ---PRGKWPIS 142 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL--~~~p~ill~~~Dep---~~g~~~~~ 142 (156)
.+|+|+++++.+++++ +.+|+++| +||| |+++|+.+
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlL--LDEpgrGTs~lD~~~ 675 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVL--LDEVGRGTSSLDGVA 675 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEE--EESTTTTSCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEE--EECCCCCCCCcCHHH
Confidence 3689999999999999 99999887 9999 77778654
No 103
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.73 E-value=1.9e-05 Score=60.05 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 113 RVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 113 rv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
|++||+||..+|++++ +|||+ |+.+
T Consensus 88 ~~~la~aL~~~p~ill--lDEp~---D~~~ 112 (261)
T 2eyu_A 88 ADALRAALREDPDVIF--VGEMR---DLET 112 (261)
T ss_dssp HHHHHHHHHHCCSEEE--ESCCC---SHHH
T ss_pred HHHHHHHHhhCCCEEE--eCCCC---CHHH
Confidence 7999999999999888 99999 6553
No 104
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.73 E-value=9.3e-06 Score=62.24 Aligned_cols=108 Identities=8% Similarity=-0.030 Sum_probs=56.6
Q ss_pred HHHHHHhhhhhcCCCCcce-EEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDG-QILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G-~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
+++++|+|...+ .+| .|.+.+.+.......+.+..+.+...+ +..+++.... + ......+.+.+
T Consensus 50 Tl~~~ia~~~~~----~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~~~~l~~~~-~------~~~~~~~~~~~ 114 (296)
T 1cr0_A 50 TFVRQQALQWGT----AMGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQSDSLKREI-I------ENGKFDQWFDE 114 (296)
T ss_dssp HHHHHHHHHHHH----TSCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GGCHHHHHHH-H------HHTHHHHHHHH
T ss_pred HHHHHHHHHHHH----HcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hhccccccCC-C------CHHHHHHHHHH
Confidence 678888898885 557 675544433322222223333332211 1222332211 1 01112233444
Q ss_pred HHHHcCCCccccCccCcCChHH-HHHHHHHHHHhcCCCeeEEecCCCCCC
Q psy16753 89 LLKELGLLKCKNSVLNVLSGGE-RKRVALAVQVSQDCSRVVKITDSQPRG 137 (156)
Q Consensus 89 ~l~~~~L~~~~~~~~~~LSgGe-rqrv~LA~AL~~~p~ill~~~Dep~~g 137 (156)
+++...+. ....+.++|.++ +|++. |+++..+|+++| +|||+..
T Consensus 115 ~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~lli--lDept~~ 159 (296)
T 1cr0_A 115 LFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVII--LDHISIV 159 (296)
T ss_dssp HHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEE--EEEEC--
T ss_pred HhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEE--EcCcccc
Confidence 44333331 233446788888 66666 999999999887 9999993
No 105
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.70 E-value=1.4e-07 Score=76.52 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=69.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEec---------CCCCCC--CC----CCHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVP---------QHDLTV--DT----LTVHEHMT 66 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~---------Q~~~~~--~~----ltv~e~l~ 66 (156)
.|++++|+|++.+ ++|+|.+.|.++... .....+++.| |++..+ .. .|+.+++.
T Consensus 181 TTlL~allg~l~~----~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~ 256 (418)
T 1p9r_A 181 STTLYAGLQELNS----SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQ 256 (418)
T ss_dssp HHHHHHHHHHHCC----TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHH
T ss_pred HHHHHHHHhhcCC----CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHH
Confidence 3788999998875 789999998876421 1223345544 776542 32 46777776
Q ss_pred HHHHhhcc-cCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeE
Q psy16753 67 LMARLKMD-RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128 (156)
Q Consensus 67 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill 128 (156)
++..-+.. ...........+ +.+..+++.+.. .+..||||++|| ||++++.+|++..
T Consensus 257 a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 257 ASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 54321110 001111111222 346778887653 678899999999 9999999999775
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.69 E-value=8.4e-07 Score=64.49 Aligned_cols=101 Identities=15% Similarity=-0.005 Sum_probs=63.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++. ++| |.++|.+.... .+++.+||++|+..- .. +++ .+.. ...
T Consensus 15 TTll~~l~g~~~-----~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g--~~---~~l---~~~~----~~~-------- 68 (189)
T 2i3b_A 15 TTLIHKASEVLK-----SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG--TR---GPL---SRVG----LEP-------- 68 (189)
T ss_dssp HHHHHHHHHHHH-----HTT-CCCEEEECCEEETTSSEEEEEEEETTS--CE---EEE---EECC----CCC--------
T ss_pred HHHHHHHHhhcc-----cCC-EEEcCEecchhHhhhceEEEEEEeccc--ce---ehh---hccc----ccC--------
Confidence 378889999887 378 99988876432 346778999987511 11 110 0000 000
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHH-HHH---HHhcCCCeeEEecCC--CCCCCCc
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVA-LAV---QVSQDCSRVVKITDS--QPRGKWP 140 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~-LA~---AL~~~p~ill~~~De--p~~g~~~ 140 (156)
....-.+...++...+|+|||+++. +++ |++.+|+++| +|| |+...|+
T Consensus 69 ---~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvli--lDE~g~~~~~~~ 122 (189)
T 2i3b_A 69 ---PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV--IDEIGKMELFSQ 122 (189)
T ss_dssp ---CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEE--ECCCSTTTTTCS
T ss_pred ---CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEE--EeCCCccccccH
Confidence 0000112345566789999998884 444 5789999888 999 8877764
No 107
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.69 E-value=2.9e-08 Score=74.50 Aligned_cols=118 Identities=12% Similarity=0.010 Sum_probs=68.3
Q ss_pred HHHHHHh---hhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh-h----cccCCcHHH
Q psy16753 10 SGIHLLG---QRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-K----MDRNLHHVE 81 (156)
Q Consensus 10 ~~l~~l~---g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~-~----~~~~~~~~~ 81 (156)
|++++|+ |+.. ++.|+|.++|.+... .....+++++|+...++..++.+++...... . ...+.....
T Consensus 42 Tl~k~La~~lg~~~----~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~ 116 (246)
T 2bbw_A 42 TVCQRIAQNFGLQH----LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL 116 (246)
T ss_dssp HHHHHHHHHHCCCC----EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH
T ss_pred HHHHHHHHHhCCeE----ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH
Confidence 4556666 5544 578888877654321 1223345567777677777888887653211 0 001111111
Q ss_pred HHHHHHHHHH--HcC------------CCccccCccCcCChHHHHHHHHHHHH-hcCCCeeEEecC----CCCCCCCchh
Q psy16753 82 RARTVDALLK--ELG------------LLKCKNSVLNVLSGGERKRVALAVQV-SQDCSRVVKITD----SQPRGKWPIS 142 (156)
Q Consensus 82 ~~~~~~~~l~--~~~------------L~~~~~~~~~~LSgGerqrv~LA~AL-~~~p~ill~~~D----ep~~g~~~~~ 142 (156)
..++.+.+ .++ +....++++..||| |+ +|+ +.+|++++ +| |||+|+|+.+
T Consensus 117 --~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~ll--lD~~~~EP~~~ld~~~ 185 (246)
T 2bbw_A 117 --GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHG--IDDVTGEPLVQQEDDK 185 (246)
T ss_dssp --HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTT--BCTTTCCBCBCCGGGS
T ss_pred --HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccc--cccccccccccCCCCc
Confidence 12222221 122 22334677888999 55 677 99999887 99 9999999864
Q ss_pred h
Q psy16753 143 A 143 (156)
Q Consensus 143 ~ 143 (156)
.
T Consensus 186 ~ 186 (246)
T 2bbw_A 186 P 186 (246)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.55 E-value=6.8e-05 Score=56.97 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCC--CCCch
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPR--GKWPI 141 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~--g~~~~ 141 (156)
...++++.+++.+..++.+..||+|+++++ ++++.+|+++| +|||++ ++|+.
T Consensus 98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~liv--lDe~~~~~~~d~~ 151 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMV--LDTLRRFHIEEEN 151 (279)
T ss_dssp HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEE--EECGGGGCCSCTT
T ss_pred hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEE--ECCHHHhcCCCcC
Confidence 355678888888777888999999997765 68888999887 999999 88874
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.44 E-value=4.1e-06 Score=64.76 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=55.3
Q ss_pred eeEecCCCCCCCCCCHHHHHHHHHH---hhcccCCcHHHHHHHHHHHHHHcCCC------c--cccCccCcCChHHHHHH
Q psy16753 46 SGFVPQHDLTVDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLL------K--CKNSVLNVLSGGERKRV 114 (156)
Q Consensus 46 ig~v~Q~~~~~~~ltv~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~L~------~--~~~~~~~~LSgGerqrv 114 (156)
+.+|+|+...++. +..+++.+... ....++.....+...+.+.++.+.-. . ....+-..+||||+||+
T Consensus 65 ~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~ 143 (290)
T 1odf_A 65 IGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRC 143 (290)
T ss_dssp EEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEEC
T ss_pred EEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCcccccc
Confidence 4455999877654 67777765421 00000111111123445556655322 1 12344568999999999
Q ss_pred HHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 115 ALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 115 ~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.+|++.+.+|+++| +||++.|+|+..
T Consensus 144 ~~a~~~~~~~~IlI--lEG~~~~ld~~~ 169 (290)
T 1odf_A 144 PTGQKIKLPVDIFI--LEGWFLGFNPIL 169 (290)
T ss_dssp SSCEEEESSCSEEE--EEESSTTCCCCC
T ss_pred ccccceEcCCCEEE--EeCccccCCccc
Confidence 98733223899887 999999999854
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.44 E-value=6.1e-05 Score=66.63 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=30.8
Q ss_pred CccCcCChHHHHHHHHHHHH--hcCCCeeEEecCCCCCCCCchhh
Q psy16753 101 SVLNVLSGGERKRVALAVQV--SQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 101 ~~~~~LSgGerqrv~LA~AL--~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.....+|+|++++..+|+++ +++|+++| +|||++|+||...
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlL--LDEp~~GlD~~~~ 759 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRSATKDSLII--IDELGRGTSTYDG 759 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEE--EESCSCSSCHHHH
T ss_pred hHHHhHhhhHHHHHHHHHHHHhccCCcEEE--EeCCCCCCCHHHH
Confidence 34567889998888888888 99999887 9999999998643
No 111
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.44 E-value=3.6e-09 Score=82.79 Aligned_cols=120 Identities=6% Similarity=-0.030 Sum_probs=61.1
Q ss_pred HHHHHHhhhhhcC----CCCcceEEEECCEecCcc------------------cccceeeEe---cCCCCCCCCCCHHHH
Q psy16753 10 SGIHLLGQRVVHE----LSDVDGQILLNGLEVEKN------------------LMVKVSGFV---PQHDLTVDTLTVHEH 64 (156)
Q Consensus 10 ~~l~~l~g~~~~~----~~~~~G~I~~~G~~i~~~------------------~~~~~ig~v---~Q~~~~~~~ltv~e~ 64 (156)
|++|.|.|..... +.++.|+|.++|.++... ..++.++++ +|...+++..++.|+
T Consensus 19 Tll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~ 98 (318)
T 1nij_A 19 TLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIEC 98 (318)
T ss_dssp HHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTSCCCSEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCCCCCCEEEEeC
Confidence 6788888876210 135899999999887432 112234555 455444444444444
Q ss_pred HHHHHHhhcccCC--cHH-HHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCC
Q psy16753 65 MTLMARLKMDRNL--HHV-ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQ 134 (156)
Q Consensus 65 l~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep 134 (156)
..++........+ ... .....+..++..+++.+..++. .++|+||+||+..+++++.+|++ +|||
T Consensus 99 ~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-~~ls~g~~Q~~~ad~ill~k~dl----~de~ 166 (318)
T 1nij_A 99 TGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADRILLTKTDV----AGEA 166 (318)
T ss_dssp ETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-HHCHHHHHHHHTCSEEEEECTTT----CSCT
T ss_pred CCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-hhchHHHHHHHhCCEEEEECccc----CCHH
Confidence 3221000000000 000 0000111223333443333333 37899999999877778788874 3887
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.43 E-value=1.1e-06 Score=71.36 Aligned_cols=109 Identities=10% Similarity=-0.052 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCc--ccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEK--NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~--~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 86 (156)
.|++++|+|...+ ..| .+|..+.. ......+++++|....+..+++++++.+...... ....+.+
T Consensus 45 STLln~L~g~~~~----~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i 111 (418)
T 2qag_C 45 STLINSLFLTDLY----SPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNCWQPV 111 (418)
T ss_dssp HHHHHHHTTCCCC----CCC---CCSCC-----CCEEEEEECC------CEEEEEEECC-----------------CHHH
T ss_pred HHHHHHHhCCCCC----CCC---CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhhHHHH
Confidence 3778888887663 233 12222111 1123457889998777777888887765432110 0000112
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeE-EecCCCC-CCCCchh
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV-KITDSQP-RGKWPIS 142 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill-~~~Dep~-~g~~~~~ 142 (156)
.+.++ ..++.+++||+.||+|++.+|++-+ +++|||| .|+|+..
T Consensus 112 ~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 112 IDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp HHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred HHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 12221 1345677789999999999999321 2489999 6999875
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=3.3e-07 Score=65.66 Aligned_cols=105 Identities=8% Similarity=0.002 Sum_probs=57.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDA 88 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (156)
|+.++|+|. +..|.|.++|.++... ..+..++|++|... +..++.+++.+........+.. ..++.
T Consensus 24 Tl~~~La~~------~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~~-----~~~~~ 90 (191)
T 1zp6_A 24 TIAEALANL------PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGYF-----VILDG 90 (191)
T ss_dssp HHHHHHHTC------SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSCE-----EEECS
T ss_pred HHHHHHHhc------cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCCe-----EEEec
Confidence 445555554 3689999999876322 11233567776543 3456777765432211000000 00000
Q ss_pred HHHHcCCCccc--cCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753 89 LLKELGLLKCK--NSVLNVLSGGERKRVALAVQVSQDCSRV 127 (156)
Q Consensus 89 ~l~~~~L~~~~--~~~~~~LSgGerqrv~LA~AL~~~p~il 127 (156)
++..+++.... +..+..+|+|++|++.++|++..+|+++
T Consensus 91 ~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 91 VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 11111222111 3456789999999999999999999866
No 114
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.36 E-value=0.00014 Score=52.20 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCcc-ccCccCcCChHHHHH-HHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 85 TVDALLKELGLLKC-KNSVLNVLSGGERKR-VALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 85 ~~~~~l~~~~L~~~-~~~~~~~LSgGerqr-v~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
.+.+.++..++... ...++..+|+|++|+ +..+++++.+|+.++ +|||++++|+...
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sal~~~~~ 186 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV--QVETFSSLKKQGV 186 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE--EEEECBTTTTBSH
T ss_pred HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC--ceEEEeecCCCCH
Confidence 45566677777643 356678899999999 899999999988766 8999999997643
No 115
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.33 E-value=3.7e-06 Score=66.53 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHh-------cCCCeeEEecCCCCCCCCch
Q psy16753 107 SGGERKRVALAVQVS-------QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 107 SgGerqrv~LA~AL~-------~~p~ill~~~Dep~~g~~~~ 141 (156)
|.+++|++.++++++ .+|+++| +|||++++|+.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llI--lDs~ta~ld~~ 247 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLI--VDSLTSHFRSE 247 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEE--EETSSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEE--EeCchHhhhhh
Confidence 345666666666666 6899877 99999999874
No 116
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=3.8e-05 Score=59.86 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=48.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEE---CCEecCcc-cccce-eeEecCCCCCCC----CCCHHHHHH--HHHH--hh----
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILL---NGLEVEKN-LMVKV-SGFVPQHDLTVD----TLTVHEHMT--LMAR--LK---- 72 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~-~~~~~-ig~v~Q~~~~~~----~ltv~e~l~--~~~~--~~---- 72 (156)
|++|+|+|... +..|+|.+ +|..++.. ...+. .|+++|.+.+.. .+++ +++. |... +.
T Consensus 188 TLln~L~g~~~----~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~ 262 (307)
T 1t9h_A 188 SLLNAISPELG----LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCK 262 (307)
T ss_dssp HHHHHHCC-----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCS
T ss_pred HHHHHhccccc----ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhcc
Confidence 56677777665 58999999 88776542 12222 689999986654 5788 7773 3211 10
Q ss_pred cccCCcHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHH
Q psy16753 73 MDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKR 113 (156)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqr 113 (156)
........+....+.++++.+++.+...+....++.|++||
T Consensus 263 f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 263 FRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp STTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 00001111223468899999999875556667777888763
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=4.1e-06 Score=64.89 Aligned_cols=89 Identities=7% Similarity=-0.022 Sum_probs=51.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEE---CCEecCccc---ccceeeEecCCCC----------------CCCCCCHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILL---NGLEVEKNL---MVKVSGFVPQHDL----------------TVDTLTVHEHMT 66 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~~---~~~~ig~v~Q~~~----------------~~~~ltv~e~l~ 66 (156)
.|++|+|+|+.. |++|+|.+ +|.+++... ..+.+|+++|.+. +++.+++ +|+.
T Consensus 183 STll~~l~g~~~----~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~ 257 (301)
T 1u0l_A 183 SSLLNAINPGLK----LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCF 257 (301)
T ss_dssp HHHHHHHSTTCC----CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCS
T ss_pred HHHHHHhccccc----ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCc
Confidence 367888888877 48999999 898876421 1235799999874 3667777 7766
Q ss_pred HHHHhhcccCCcHHHHHHHHHHHHHHcCCC-ccccCccCcCCh
Q psy16753 67 LMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSG 108 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg 108 (156)
|....+ ......++.++++.++|. ...++++..||.
T Consensus 258 ~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 258 FSDCNH------VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp STTCCS------SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCCcC------CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 532111 112235688999999995 667888888875
No 118
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.11 E-value=0.00016 Score=64.47 Aligned_cols=48 Identities=19% Similarity=0.045 Sum_probs=32.7
Q ss_pred HcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 92 ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 92 ~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
.+|+.+...+....+|+++++ +++|++++++|+++| +|||++|+|+..
T Consensus 838 rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlL--LDEp~~Gtd~~d 885 (1022)
T 2o8b_B 838 RLGASDRIMSGESTFFVELSE-TASILMHATAHSLVL--VDELGRGTATFD 885 (1022)
T ss_dssp ECC---------CHHHHHHHH-HHHHHHHCCTTCEEE--EECTTTTSCHHH
T ss_pred HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE--EECCCCCCChHH
Confidence 344444444455677877765 999999999999887 999999999764
No 119
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.07 E-value=0.00047 Score=54.66 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCeeEEecCCCCC
Q psy16753 115 ALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 115 ~LA~AL~~~p~ill~~~Dep~~ 136 (156)
+||+||..+|++++ +|||++
T Consensus 188 ~La~aL~~~Pdvil--lDEp~d 207 (356)
T 3jvv_A 188 ALRSALREDPDIIL--VGEMRD 207 (356)
T ss_dssp HHHHHTTSCCSEEE--ESCCCS
T ss_pred HHHHHhhhCcCEEe--cCCCCC
Confidence 99999999999998 999993
No 120
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.96 E-value=2.7e-05 Score=64.40 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------c--ccceeeEecCCCCCCCCCCHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------L--MVKVSGFVPQHDLTVDTLTVHEHMTLMA 69 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~--~~~~ig~v~Q~~~~~~~ltv~e~l~~~~ 69 (156)
.|++++|+|++.+ ++|+|.+.|.+..+. . .+..++|++|....++..++.+++.++.
T Consensus 307 TTLl~~LAgll~~----~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 307 TTTIGKLARQFEQ----QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh----cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 3788899999885 789999988776431 1 2456899999987777788999988764
No 121
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.74 E-value=0.00052 Score=54.22 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc----------cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN----------LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH 78 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~----------~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 78 (156)
.|++++|+|+..+ +.|.|.+.|++.... ...+.+.+++|... +..+.+......
T Consensus 85 TTLl~~I~g~~~~----~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------- 148 (347)
T 2obl_A 85 STLLGMICNGASA----DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------- 148 (347)
T ss_dssp HHHHHHHHHHSCC----SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH-------
T ss_pred HHHHHHHhcCCCC----CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH-------
Confidence 3678999999874 799999988753210 11233566665432 222322211100
Q ss_pred HHHHHHHHHHHHHHcCCCccc--cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 79 HVERARTVDALLKELGLLKCK--NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 79 ~~~~~~~~~~~l~~~~L~~~~--~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
..+.+.....+ .+.. -+.+..||+|| |++++| +.+|++ |+|+||...
T Consensus 149 -----~~~ae~~~~~~-~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--------t~Gldp~~~ 197 (347)
T 2obl_A 149 -----TTIAEYFRDQG-KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--------RGGFPPSVF 197 (347)
T ss_dssp -----HHHHHHHHTTT-CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--------BTTBCHHHH
T ss_pred -----HHHHHHHHhcc-ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--------ccCCCHHHH
Confidence 00111111111 1111 14578899999 899999 577764 899998753
No 122
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.69 E-value=7.4e-05 Score=58.66 Aligned_cols=57 Identities=5% Similarity=-0.056 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCccc-------ccce--eeEecCCCCCCCCCCHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNL-------MVKV--SGFVPQHDLTVDTLTVHEHMTLMA 69 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~-------~~~~--ig~v~Q~~~~~~~ltv~e~l~~~~ 69 (156)
.|++++|+|++.+ ++|+|.+.|.++.+.. +++. +.+++|....++..++.+++.++.
T Consensus 143 TTll~~Lag~l~~----~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 143 TTTIAKLANWLKN----HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 3788999999885 7999999999975421 2333 348899888888889999987653
No 123
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.33 E-value=6.5e-06 Score=68.33 Aligned_cols=41 Identities=5% Similarity=-0.107 Sum_probs=28.9
Q ss_pred HHHHH--HhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCC
Q psy16753 10 SGIHL--LGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDL 54 (156)
Q Consensus 10 ~~l~~--l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~ 54 (156)
|++++ ++|++.| .+|.|+++|.+.... ..++.+|+++|++.
T Consensus 54 TL~~~~ll~Gl~~~----~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 54 LFSIQFLYNGIIEF----DEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp HHHHHHHHHHHHHH----CCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 56677 6788875 689999999874321 23456789988753
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.12 E-value=0.0055 Score=48.66 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhhcCCCCc-ceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCcHHHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDV-DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~-~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~ 87 (156)
.|++++|+|++.+ + +|.|.+.|.++. ...+..+++++|..
T Consensus 150 TTll~~l~~~~~~----~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------------------------------- 190 (372)
T 2ewv_A 150 STTIASMIDYINQ----TKSYHIITIEDPIE-YVFKHKKSIVNQRE---------------------------------- 190 (372)
T ss_dssp HHHHHHHHHHHHH----HSCCEEEEEESSCC-SCCCCSSSEEEEEE----------------------------------
T ss_pred HHHHHHHHhhcCc----CCCcEEEEecccHh-hhhccCceEEEeee----------------------------------
Confidence 3788899998885 5 799977665553 22344567777631
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~ 135 (156)
+++. +..+ +.+|+.+|..+|++++ +|||+
T Consensus 191 -----~g~~------~~~~------~~~l~~~L~~~pd~il--ldE~~ 219 (372)
T 2ewv_A 191 -----VGED------TKSF------ADALRAALREDPDVIF--VGEMR 219 (372)
T ss_dssp -----BTTT------BSCS------HHHHHHHTTSCCSEEE--ESCCC
T ss_pred -----cCCC------HHHH------HHHHHHHhhhCcCEEE--ECCCC
Confidence 1221 1233 4689999999999887 99998
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.00 E-value=0.00085 Score=47.09 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL 67 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~ 67 (156)
.|++|+|+|++ | ++|+|.++|.++.+.... ..+++|+..+| .+|+.+++.+
T Consensus 47 TTLlr~l~g~l-~----~~G~V~~~g~~i~~~~~~--~~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 47 TTLTRGMLQGI-G----HQGNVKSPTYTLVEEYNI--AGKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp HHHHHHHHHHT-T----CCSCCCCCTTTCEEEEEE--TTEEEEEEECT-TCSCTTHHHH
T ss_pred HHHHHHHHHhC-C----CCCeEEECCEeeeeeccC--CCcceeccccc-cCCcHHHHHH
Confidence 37888999988 6 699999999887532111 13789998888 8999898854
No 126
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.92 E-value=0.0004 Score=50.50 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=14.4
Q ss_pred cCCCeeEEecCCCCCCCCc
Q psy16753 122 QDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 122 ~~p~ill~~~Dep~~g~~~ 140 (156)
.+|++++ +|||++++|+
T Consensus 124 ~~~~lli--lDe~~~~l~~ 140 (231)
T 4a74_A 124 RPVKLLI--VDSLTSHFRS 140 (231)
T ss_dssp SCEEEEE--EETSSHHHHH
T ss_pred CceeEEE--ECChHHHhcc
Confidence 3888777 9999999887
No 127
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.82 E-value=0.0043 Score=54.11 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=25.9
Q ss_pred ccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 102 VLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
....+|+++++ +..+...+.+|+++| +|||++|+|+..
T Consensus 666 ~~stf~~e~~~-~~~il~~a~~psLlL--LDEp~~Gtd~~d 703 (800)
T 1wb9_A 666 GRSTFMVEMTE-TANILHNATEYSLVL--MDEIGRGTSTYD 703 (800)
T ss_dssp ----CHHHHHH-HHHHHHHCCTTEEEE--EESCCCCSSSSH
T ss_pred hhhhhhHHHHH-HHHHHHhccCCCEEE--EECCCCCCChhH
Confidence 34556777654 444555689999887 999999999763
No 128
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.41 E-value=0.00028 Score=55.08 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=56.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCC--cHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNL--HHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~ 84 (156)
+++++|+|.+.....+++|.+..++.++... ..+..+.+++|...+.+ ++.+++........ ... ......+
T Consensus 66 TLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~ 142 (334)
T 1in4_A 66 TLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAK 142 (334)
T ss_dssp HHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSC-CCC---------
T ss_pred HHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccc
Confidence 6788888887432235778777666554321 12346889998776654 67776643322110 000 0112223
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHH
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA 117 (156)
.+...++.+++.. ..+.+..||+|++||+.++
T Consensus 143 ~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 143 SIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp ------CCCEEEE-EESCGGGSCHHHHTTCSEE
T ss_pred cccccCCCeEEEE-ecCCcccCCHHHHHhcCce
Confidence 4545566666644 5677889999999998543
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.19 E-value=0.00014 Score=57.21 Aligned_cols=45 Identities=7% Similarity=-0.038 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-------cccceeeEecCCCCCCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-------LMVKVSGFVPQHDLTVD 57 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-------~~~~~ig~v~Q~~~~~~ 57 (156)
.|++++|+|++.+ ++|+|.+.|.++... ..+..+++++|++..+.
T Consensus 69 STLl~~l~g~~~~----~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 69 STTIDALGSLLTA----AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHHHHHHhhhh----CCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 4789999999985 799999999887432 23556899999877664
No 130
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.18 E-value=0.00042 Score=51.01 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 107 SGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 107 SgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
+.++..+...+..-..+|++++ +|||++++|
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~li--lDep~~~ld 149 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLV--IDSIPSIAL 149 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEE--EECHHHHHH
T ss_pred cHHHHHHHHHHHHHhhCCCEEE--EccHHHHHh
Confidence 3444444444444468999887 999999986
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.012 Score=45.42 Aligned_cols=42 Identities=5% Similarity=-0.183 Sum_probs=16.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEecCCCC
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVPQHDL 54 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~Q~~~ 54 (156)
+++++++|.+.+ +..|.+.++|.+.... .....+++++|...
T Consensus 51 tl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 51 TRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp HHHHTHHHHHSC---TTCCC------------------CCEECSSE
T ss_pred HHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccce
Confidence 567777773332 5789999999876422 22345678877654
No 132
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.71 E-value=0.014 Score=41.87 Aligned_cols=36 Identities=17% Similarity=0.009 Sum_probs=27.5
Q ss_pred CcCChHH--HHHHHHHHHHhcC-CCeeEEecCCCCCCCCch
Q psy16753 104 NVLSGGE--RKRVALAVQVSQD-CSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 104 ~~LSgGe--rqrv~LA~AL~~~-p~ill~~~Dep~~g~~~~ 141 (156)
...|+++ ++++..+++++.+ |+++| +|||++++|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lli--iD~~~~~l~~~ 121 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVV--VDSITAHYRAE 121 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEE--EECCCCCTTGG
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEE--EcCcHHHhhhc
Confidence 3455554 5678888899876 88776 99999999874
No 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.64 E-value=0.037 Score=42.75 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.8
Q ss_pred HHHHHcCCCccccCccCcCChHHHHHH---HHHHHHhcCCCeeEEecCCCCC
Q psy16753 88 ALLKELGLLKCKNSVLNVLSGGERKRV---ALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 88 ~~l~~~~L~~~~~~~~~~LSgGerqrv---~LA~AL~~~p~ill~~~Dep~~ 136 (156)
...+..++.. +...|+|+.+++ .+++++..+++++| +|+|..
T Consensus 153 ~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvI--iDtpg~ 197 (306)
T 1vma_A 153 IWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVI--IDTAGR 197 (306)
T ss_dssp HHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEE--EEECCC
T ss_pred HHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEE--EECCCc
Confidence 4455666642 335689999999 89999999999887 999976
No 134
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.31 E-value=0.0021 Score=52.11 Aligned_cols=116 Identities=9% Similarity=0.041 Sum_probs=60.4
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC---cccccceeeEecCCCCCCCCCCHHHHHHHHHHhhcccCCc--HHHHH
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE---KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH--HVERA 83 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~---~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~~~--~~~~~ 83 (156)
.|++++|+|+.. .| .++. ....++.++|++|+..+++.+|+.+++.++........+. .....
T Consensus 56 STLln~L~G~~l------~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 56 STLMDTLFNTKF------EG------EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp HHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred HHHHHHHhCccc------cC------CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 378888888842 22 2221 1122456899999987777777777765432110000000 01123
Q ss_pred HHHHHHHHHc-CCC----ccccCc----c-------CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 84 RTVDALLKEL-GLL----KCKNSV----L-------NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 84 ~~~~~~l~~~-~L~----~~~~~~----~-------~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
..+.++++.. ++. ...+.+ + ..++... +.++++|..++++++ +|+|++.+.+.
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~--Vi~KtD~Lt~~ 192 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIP--IIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEE--EESCGGGSCHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEE--EEcchhccchH
Confidence 3455556555 442 112222 1 2456555 789999998888777 99999988754
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.85 E-value=5.3e-06 Score=63.46 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCC-CCCCCCCHHHHHHHHHHhhcccCCcHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHD-LTVDTLTVHEHMTLMARLKMDRNLHHVERART 85 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~ 85 (156)
+++++|+|... .|.|.++|.++... ...+.++++||.. ...+.+++.+++......+ .. ..
T Consensus 59 tLakala~~~~------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r--------~~-~~ 123 (274)
T 2x8a_A 59 LLAKAVANESG------LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--------SD-RE 123 (274)
T ss_dssp HHHHHHHHHTT------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------------
T ss_pred HHHHHHHHHcC------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc--------CC-Cc
Confidence 56677777654 36888888776432 1123456666653 2333344444432211000 00 00
Q ss_pred HHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 86 ~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~ 135 (156)
. + ......++.+.+|||||+||+.+++|+..+|++ +|+++
T Consensus 124 ~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~----LD~al 163 (274)
T 2x8a_A 124 T----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI----IDPAI 163 (274)
T ss_dssp ---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG----SCHHH
T ss_pred c----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhh----CCHhh
Confidence 0 0 123345667788999999999999999999984 48765
No 136
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.70 E-value=0.041 Score=39.45 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=29.0
Q ss_pred cCChHHHHHHHHHHHHhcCCC--eeEEecCCCCCCC--Cch
Q psy16753 105 VLSGGERKRVALAVQVSQDCS--RVVKITDSQPRGK--WPI 141 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL~~~p~--ill~~~Dep~~g~--~~~ 141 (156)
..|.++.++...+.+...+|+ ++| +|||++++ |+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~lli--lDe~~~~~~~d~~ 141 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLV--IDSVSALFLDKPA 141 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEE--EETGGGGSSSCGG
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEE--EECchHhhcCCHH
Confidence 448999988888888888999 887 99999777 764
No 137
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.24 E-value=0.1 Score=41.08 Aligned_cols=57 Identities=9% Similarity=-0.112 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc-cccceeeEec-CCCCC--CCCCCHHHHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN-LMVKVSGFVP-QHDLT--VDTLTVHEHMTLMAR 70 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-~~~~~ig~v~-Q~~~~--~~~ltv~e~l~~~~~ 70 (156)
|++++|+|++. |++|.|.++|..-... ..+..+++++ |+... +...|+.+++..+.+
T Consensus 190 Tll~~l~~~~~----~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 190 TLMKALMQEIP----FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp HHHHHHHTTSC----TTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred HHHHHHHhcCC----CCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence 66777777766 4899999998532111 2456789998 76553 467899999987654
No 138
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.07 E-value=0.027 Score=45.41 Aligned_cols=36 Identities=14% Similarity=-0.042 Sum_probs=30.5
Q ss_pred cCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCCch
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~~~ 141 (156)
+.++.++|+|++|++.+|++|+.+|.++++ +++|+.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl------NKlDl~ 282 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL------NKVDLL 282 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE------ECCTTS
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE------ECCChh
Confidence 567788999999999999999999998884 666654
No 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.23 E-value=0.0011 Score=48.07 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=23.3
Q ss_pred CcCChHHHHHHHHH-HHHhcCCCeeEEecCCCC
Q psy16753 104 NVLSGGERKRVALA-VQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 104 ~~LSgGerqrv~LA-~AL~~~p~ill~~~Dep~ 135 (156)
..+|+|++|++.++ ++++.++.+++ +|||.
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l--~de~~ 140 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLL--FDAPG 140 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTT--BCSTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceec--cCCch
Confidence 45799999999887 77777776654 89874
No 140
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.50 E-value=0.00035 Score=52.90 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=50.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc---cccceeeEecCCCC-CCCCCCHHHHHHHHHHhhccc-CCcHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN---LMVKVSGFVPQHDL-TVDTLTVHEHMTLMARLKMDR-NLHHVERAR 84 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~---~~~~~ig~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~ 84 (156)
+++++|++... .|.|.+++.++... .....+++++|... ..+.+++.|++.......... ........+
T Consensus 88 tl~~~i~~~~~------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~ 161 (278)
T 1iy2_A 88 HLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ 161 (278)
T ss_dssp HHHHHHHHHTT------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHH
T ss_pred HHHHHHHHHcC------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH
Confidence 45566666543 67888877665321 11233556666642 344555656653322111000 000011112
Q ss_pred HHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCe
Q psy16753 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSR 126 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~i 126 (156)
.+.. .+.+||||++|++.+++|++.+|++
T Consensus 162 ~~~~-------------ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 162 TLNQ-------------LLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HHHH-------------HHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHH-------------HHHHHhCCCCCCCEEEEEecCCchh
Confidence 2222 2346889999999999988888874
No 141
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.77 E-value=0.11 Score=40.74 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=21.0
Q ss_pred cCChHHHHHHHHHHHH---hc--CCCeeEEecCCCC
Q psy16753 105 VLSGGERKRVALAVQV---SQ--DCSRVVKITDSQP 135 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL---~~--~p~ill~~~Dep~ 135 (156)
.+|+|++||..+++++ .. ++++++ +|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ili--lde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIE--IESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEE--EECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEE--eCCCC
Confidence 4899999999999999 66 788887 89975
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.48 E-value=0.28 Score=37.50 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=39.3
Q ss_pred HHHHHHhhhhhcCCCCcceEEEE---CCEecCcccccceeeEecCCCCCCCCCCHHHHHHHHHHh
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILL---NGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~---~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~~~~~ 71 (156)
|++++|+|++... |++|+|.+ +|...... .++.++++ |....++.+++.+++.+...+
T Consensus 95 Tl~~~L~~~l~~~--~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 95 TTARVLQALLSRW--PEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp HHHHHHHHHHTTS--TTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 6677777876610 37999999 88765322 23456788 766666778898888765443
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.66 E-value=0.00041 Score=51.68 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=21.1
Q ss_pred CcCChHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753 104 NVLSGGERKRVALAVQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~ 135 (156)
..||||++|++.+++|+..+|++ +|++.
T Consensus 144 ~~l~g~~~~~~~i~~a~t~~p~~----ld~~l 171 (254)
T 1ixz_A 144 VEMDGFEKDTAIVVMAATNRPDI----LDPAL 171 (254)
T ss_dssp HHHHTCCTTCCEEEEEEESCGGG----SCGGG
T ss_pred HHHhCCCCCCCEEEEEccCCchh----CCHHH
Confidence 45788999988888888888874 46543
No 144
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.02 E-value=0.38 Score=35.45 Aligned_cols=40 Identities=0% Similarity=-0.146 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcc-----------cccceeeEecCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKN-----------LMVKVSGFVPQH 52 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~-----------~~~~~ig~v~Q~ 52 (156)
.|++++|+|++.| ++|.|.++|.++... ..+..++|++|.
T Consensus 41 STll~~i~g~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 41 STTMAAFVTALIP----DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHHHHHHSC----CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred HHHHHHHhccccc----CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 3678888888875 899999999876211 124557888864
No 145
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=82.98 E-value=0.96 Score=37.14 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=28.1
Q ss_pred cCccCcCChHHHHHHHHHHHHh--c-----------C--CCeeEEecCCCCCCCCchhh
Q psy16753 100 NSVLNVLSGGERKRVALAVQVS--Q-----------D--CSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~--~-----------~--p~ill~~~Dep~~g~~~~~~ 143 (156)
++..+.+||||+|...+|.+-+ . + +.+=++++||. +-+|...+
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~ 431 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSI 431 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHH
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHH
Confidence 3346789999999777665422 2 1 23333459999 88887644
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=76.20 E-value=2.4 Score=32.19 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=33.5
Q ss_pred HHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCeeEEecCCC-CCCCCc
Q psy16753 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQ-PRGKWP 140 (156)
Q Consensus 87 ~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep-~~g~~~ 140 (156)
....+..++...... ...+-.+.+|..++.+...+++++| +|+| +.|+|.
T Consensus 146 ~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~vi--iDtpp~~~~d~ 196 (295)
T 1ls1_A 146 RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLIL--VDTAGRLQIDE 196 (295)
T ss_dssp HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEE--EECCCCSSCCH
T ss_pred HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEE--EeCCCCccccH
Confidence 344556666432111 1224445678899998888999888 9999 889885
No 147
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=76.09 E-value=0.13 Score=37.56 Aligned_cols=46 Identities=11% Similarity=-0.130 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD 57 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~ 57 (156)
.|++++|+|+..|. +..|.|.+.+.+... ..+..++|+||+...|+
T Consensus 30 STLlk~L~g~~~p~--~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 30 SSLIQALLKTQPLY--DTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp HHHHHHHHHHSCTT--TEEECCCEECSCCCT-TCCBTTTBEECCHHHHH
T ss_pred HHHHHHHhccCCCC--ceEEEEEecCCCCCc-ccccCceEEECCHHHHH
Confidence 37888888887631 268999888876532 22455789998765443
No 148
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=74.95 E-value=0.49 Score=35.07 Aligned_cols=49 Identities=6% Similarity=-0.086 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHhcCCCee
Q psy16753 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV 127 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~~~p~il 127 (156)
+.....+.++++-+.+|. +..++..+++|||..|+...+++|+..++-+
T Consensus 47 s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~~~ 95 (265)
T 1b9m_A 47 SYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYDLL 95 (265)
T ss_dssp CHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHHHH
Confidence 344455678888999998 7888999999999999999999998887654
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=71.68 E-value=2.9 Score=32.61 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=28.9
Q ss_pred CcCChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 104 NVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 104 ~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
..||.++.+|+..|...+.+++++| .|+|...++
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I--~d~~~~si~ 141 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFF--YDKSYVRIE 141 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEE--ECCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEE--eCCCCCcHH
Confidence 4799999999999999998888887 899865544
No 150
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=70.77 E-value=3.2 Score=28.00 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=7.9
Q ss_pred hcCCCeeEEecCCCCC
Q psy16753 121 SQDCSRVVKITDSQPR 136 (156)
Q Consensus 121 ~~~p~ill~~~Dep~~ 136 (156)
+.+|++++ +|||+.
T Consensus 81 ~~~~~lLi--lDE~~~ 94 (149)
T 2kjq_A 81 AFEAEYLA--VDQVEK 94 (149)
T ss_dssp GGGCSEEE--EESTTC
T ss_pred HhCCCEEE--EeCccc
Confidence 34566554 666655
No 151
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=70.46 E-value=4 Score=31.57 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=29.4
Q ss_pred cCccCcCChHHHHHHHHHHHHhcCCCeeEEecC-CCCCCCCchh
Q psy16753 100 NSVLNVLSGGERKRVALAVQVSQDCSRVVKITD-SQPRGKWPIS 142 (156)
Q Consensus 100 ~~~~~~LSgGerqrv~LA~AL~~~p~ill~~~D-ep~~g~~~~~ 142 (156)
+.....+|+|++|.+. ++...++.+|+++| ++..|+|...
T Consensus 226 ~~~~~~~~~~~~~~~~---~~~~~ad~illV~D~s~~~~~~~~~ 266 (357)
T 2e87_A 226 DRPISERNEIEKQAIL---ALRYLGNLIIYIFDPSEHCGFPLEE 266 (357)
T ss_dssp SSCSTTSCHHHHHHHH---GGGGTCSEEEEEECTTCTTSSCHHH
T ss_pred ccchhhhhHHHHHHHH---HHHhcCCEEEEEEeCCccccCCHHH
Confidence 3456678999988765 45566777887899 8888877554
No 152
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=68.74 E-value=0.47 Score=37.04 Aligned_cols=41 Identities=2% Similarity=-0.225 Sum_probs=25.5
Q ss_pred ccCcCChHHHHHHHHHHHHh-cCCCeeEEecCC---CC------CCCCchhhh
Q psy16753 102 VLNVLSGGERKRVALAVQVS-QDCSRVVKITDS---QP------RGKWPISAL 144 (156)
Q Consensus 102 ~~~~LSgGerqrv~LA~AL~-~~p~ill~~~De---p~------~g~~~~~~~ 144 (156)
.+..+|+|++|+..+++++. .+|++++ +|| |+ .|+|+....
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~~~~~~lll--LdE~~~p~~~~g~~~sld~~~r~ 305 (365)
T 1lw7_A 255 QAFCIQYEGKAHPFLDSMIKEYPFDVTI--LLKNNTEWVDDGLRSLGSQKQRQ 305 (365)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHSCCSEEE--EEECCCC-----------CCSHH
T ss_pred HHHHHHHcCCCCHHHHHHHhhcCCCEEE--ECCCCCCcccCCCcCCccHHHHH
Confidence 34456777788888888764 6999877 888 65 467765443
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=67.73 E-value=1.1 Score=36.89 Aligned_cols=26 Identities=0% Similarity=-0.171 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhcCCCCcceEEEECCEecC
Q psy16753 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVE 38 (156)
Q Consensus 9 ~~~l~~l~g~~~~~~~~~~G~I~~~G~~i~ 38 (156)
.|++++|+|++.| ++|+|.++|.++.
T Consensus 43 STLl~~l~Gl~~p----~~G~I~~~g~~~~ 68 (483)
T 3euj_A 43 STTMAGFVTALIP----DLTLLNFRNTTEA 68 (483)
T ss_dssp HHHHHHHHHHHCC----CTTTCCCCCTTSC
T ss_pred HHHHHHHhcCCCC----CCCEEEECCEEcc
Confidence 3788999999885 8999999998764
No 154
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=67.68 E-value=0.69 Score=40.05 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred CccCcCChHHHHHHHHHHHHhcCCCeeEEecCCCC-CCCCc
Q psy16753 101 SVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQP-RGKWP 140 (156)
Q Consensus 101 ~~~~~LSgGerqrv~LA~AL~~~p~ill~~~Dep~-~g~~~ 140 (156)
..+.-+|.|+.+|..++.+++.+++++| +||+. +++|.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lI--lDEah~R~ld~ 224 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCII--LDEAHERTLAT 224 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEE--ECSGGGCCHHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEE--ecCccccccch
Confidence 4456789999999999999999998887 99998 48873
No 155
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=62.21 E-value=4.1 Score=27.83 Aligned_cols=20 Identities=10% Similarity=-0.079 Sum_probs=15.3
Q ss_pred hcCCCeeEEecCCCCC-CCCchh
Q psy16753 121 SQDCSRVVKITDSQPR-GKWPIS 142 (156)
Q Consensus 121 ~~~p~ill~~~Dep~~-g~~~~~ 142 (156)
+.+|++++ +|||+. ++|+.+
T Consensus 98 ~~~~~lli--lDE~~~~~~~~~~ 118 (180)
T 3ec2_A 98 VLNSPVLV--LDDLGSERLSDWQ 118 (180)
T ss_dssp HHTCSEEE--EETCSSSCCCHHH
T ss_pred hcCCCEEE--EeCCCCCcCCHHH
Confidence 44888887 999985 888653
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=61.88 E-value=37 Score=26.36 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCccc----cCccCcCChHHHHHHHHH----HHH-hcCCCeeEEecCCCCCCCCch
Q psy16753 85 TVDALLKELGLLKCK----NSVLNVLSGGERKRVALA----VQV-SQDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 85 ~~~~~l~~~~L~~~~----~~~~~~LSgGerqrv~LA----~AL-~~~p~ill~~~Dep~~g~~~~ 141 (156)
.+.++++.+++.+.. ..++..+|+|+++++.++ +++ ..++++ +|++++|..
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~SA~~g~ 339 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV------IPISALKRT 339 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE------EECBTTTTB
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE------EEEECCCCc
Confidence 355677777654321 334556788888888877 454 333332 467776643
No 157
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=55.60 E-value=11 Score=26.66 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=19.9
Q ss_pred CChHHHHH-HHHHHHHh--cCCCeeEEecCCCCCCCCch
Q psy16753 106 LSGGERKR-VALAVQVS--QDCSRVVKITDSQPRGKWPI 141 (156)
Q Consensus 106 LSgGerqr-v~LA~AL~--~~p~ill~~~Dep~~g~~~~ 141 (156)
.+..+... +.-+..++ .+|++++ +|||++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lli--iD~~~~~~~~~ 135 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLI--VDSATALYRTD 135 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEE--EETSSGGGC--
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEE--EeCchHHHHHH
Confidence 45554433 22233333 5788776 99999999874
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=54.02 E-value=0.31 Score=40.38 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCccccC---ccCcCChHHHHHH----------HHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 81 ERARTVDALLKELGLLKCKNS---VLNVLSGGERKRV----------ALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 81 ~~~~~~~~~l~~~~L~~~~~~---~~~~LSgGerqrv----------~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
++.++. +.++..|+.+..+. ....+|+|++|+. .+++++...|.++ +++||+.+-++
T Consensus 242 EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv-lvIDE~~~ll~ 311 (512)
T 2ius_A 242 EMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV-VLVDEFADLMM 311 (512)
T ss_dssp HHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE-EEEETHHHHHH
T ss_pred HHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE-EEEeCHHHHHh
Confidence 444454 77888888654321 2235788887652 2344556667643 36899765544
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=48.84 E-value=22 Score=28.38 Aligned_cols=52 Identities=8% Similarity=-0.071 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCccccCccCcCChHHHHHHHHHHHHh--cCCCeeEEecCCCCCCCC
Q psy16753 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS--QDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 84 ~~~~~~l~~~~L~~~~~~~~~~LSgGerqrv~LA~AL~--~~p~ill~~~Dep~~g~~ 139 (156)
.++.+.++.++..+..-.....+|.++.+ ..++.+. .+|+++| +|+++....
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~liv--ID~l~~~~~ 327 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIV--IDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEE--EECGGGSCC
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEE--EccHHHhcc
Confidence 34555565554433332334678999887 4566665 6788777 999887664
No 160
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=45.55 E-value=35 Score=27.93 Aligned_cols=23 Identities=0% Similarity=-0.041 Sum_probs=18.9
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEe
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLE 36 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~ 36 (156)
|++++|+|++. |++|.|+++|.+
T Consensus 275 TlL~aL~~~i~----~~~giitied~~ 297 (511)
T 2oap_1 275 TTLNAIMMFIP----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHGGGSC----TTCCEEEEESSC
T ss_pred HHHHHHHhhCC----CCCCEEEEcCcc
Confidence 67888888886 489999998865
No 161
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.81 E-value=0.91 Score=31.50 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcccccceeeEecCCCCCCCCCCHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTL 67 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~~~~~ig~v~Q~~~~~~~ltv~e~l~~ 67 (156)
||+++++..+.. +.+|.++++|.++... ...++++|.....+..++.+++.+
T Consensus 13 aGKSTl~~~L~~---~~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 13 VGKSTTCKRLAA---QLDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp SSHHHHHHHHHH---HSSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhc---ccCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHH
Confidence 344444444432 3578999988765322 124566665433333455665544
No 162
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=41.58 E-value=6.9 Score=29.73 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHhcCCCeeEEecCCCCCC
Q psy16753 106 LSGGERKRVALAVQVSQDCSRVVKITDSQPRG 137 (156)
Q Consensus 106 LSgGerqrv~LA~AL~~~p~ill~~~Dep~~g 137 (156)
||.++.+|+..|...+.++++++ .|+|...
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i--~d~~~~~ 163 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINI--FDKAGQS 163 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEE--ECCSCCB
T ss_pred CCHHHHHHHHHHHHHHhCCCEEE--ECCCCCC
Confidence 89999999999988888887776 7887543
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=40.40 E-value=11 Score=25.86 Aligned_cols=28 Identities=4% Similarity=-0.123 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCeeEEecCCCCCCCCchhh
Q psy16753 112 KRVALAVQVSQDCSRVVKITDSQPRGKWPISA 143 (156)
Q Consensus 112 qrv~LA~AL~~~p~ill~~~Dep~~g~~~~~~ 143 (156)
+...+|++++.+|++.+ +| ++++|+...
T Consensus 152 ~~~~~a~~l~~~~~~~~--ld--~Sald~~~v 179 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSF--IE--TSALDSTNV 179 (191)
T ss_dssp SCHHHHHHHHHHTTCEE--EE--CCTTTCTTH
T ss_pred cCHHHHHHHHHHcCCEE--EE--EeCCCCCCH
Confidence 34678999999999876 78 899997644
No 164
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.06 E-value=2.3 Score=29.64 Aligned_cols=43 Identities=7% Similarity=0.022 Sum_probs=25.8
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCccc---ccceeeEecCCCCCCCCCC
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNL---MVKVSGFVPQHDLTVDTLT 60 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~~---~~~~ig~v~Q~~~~~~~lt 60 (156)
|++++|+|+.. .+.+.+..++... .+..++|+||+...++.++
T Consensus 22 Tl~~~L~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (205)
T 3tr0_A 22 SLVRALVKALA--------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67 (205)
T ss_dssp HHHHHHHHHSS--------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred HHHHHHHhhCC--------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHH
Confidence 56777777732 4677776654322 2445788888765544433
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.38 E-value=40 Score=25.27 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCCCCCchh
Q psy16753 113 RVALAVQVSQDCSRVVKITDSQPRGKWPIS 142 (156)
Q Consensus 113 rv~LA~AL~~~p~ill~~~Dep~~g~~~~~ 142 (156)
+..++ .+.+++++| +| |+|+|+..
T Consensus 174 ~~al~--~~~~~dlvI--iD--T~G~~~~~ 197 (296)
T 2px0_A 174 QQAKE--LFSEYDHVF--VD--TAGRNFKD 197 (296)
T ss_dssp HHHHH--HGGGSSEEE--EE--CCCCCTTS
T ss_pred HHHHH--HhcCCCEEE--Ee--CCCCChhh
Confidence 44444 458999887 88 78888753
No 166
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=27.87 E-value=0.23 Score=40.95 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=17.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCeeEEecCCCCC
Q psy16753 105 VLSGGERKRVALAVQVSQDCSRVVKITDSQPR 136 (156)
Q Consensus 105 ~LSgGerqrv~LA~AL~~~p~ill~~~Dep~~ 136 (156)
.||||++|+..+++|...+|+. +|++..
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~----LD~aLl 187 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDI----LDPALL 187 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGG----SCTTTS
T ss_pred HhcccccCccEEEEEecCChhh----cCcccc
Confidence 4667777766666666666653 566543
No 167
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=26.06 E-value=44 Score=26.41 Aligned_cols=17 Identities=24% Similarity=0.003 Sum_probs=12.7
Q ss_pred cCCCeeEEecCCCCCCCCc
Q psy16753 122 QDCSRVVKITDSQPRGKWP 140 (156)
Q Consensus 122 ~~p~ill~~~Dep~~g~~~ 140 (156)
.+|++++ +|||++-+++
T Consensus 272 ~~~~llV--IDs~t~~~~~ 288 (400)
T 3lda_A 272 SRFSLIV--VDSVMALYRT 288 (400)
T ss_dssp SCEEEEE--EETGGGGCC-
T ss_pred cCCceEE--ecchhhhCch
Confidence 4677776 9999988875
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=25.94 E-value=39 Score=27.45 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhcCCCeeEEecCCCC
Q psy16753 108 GGERKRVALAVQVSQDCSRVVKITDSQP 135 (156)
Q Consensus 108 gGerqrv~LA~AL~~~p~ill~~~Dep~ 135 (156)
++++.|..++.|....|.+++ +||+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILf--IDEid 118 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVF--IDEID 118 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEE--EETGG
T ss_pred cHHHHHHHHHHHHhcCCCEEE--Eechh
Confidence 677888899999998998777 99973
No 169
>4goq_A Hypothetical protein; PF07372 family protein, DUF1491, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.87A {Caulobacter crescentus}
Probab=25.72 E-value=45 Score=21.57 Aligned_cols=14 Identities=14% Similarity=-0.154 Sum_probs=10.4
Q ss_pred HHHHHhcCCCeeEE
Q psy16753 116 LAVQVSQDCSRVVK 129 (156)
Q Consensus 116 LA~AL~~~p~ill~ 129 (156)
|+|-.-.+|+++|+
T Consensus 80 l~R~~rfDPDlWVV 93 (110)
T 4goq_A 80 AERAARIDPDIWVV 93 (110)
T ss_dssp HHHHHHHCTTCEEE
T ss_pred HHHHhccCCCeEEE
Confidence 44455689999997
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=23.18 E-value=4.1 Score=28.50 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=29.7
Q ss_pred HHHHHHhhhhhcCCCCcceEEEECCEecCcc--cccceeeEecCCCCCCCCCCHHHHHHH
Q psy16753 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTL 67 (156)
Q Consensus 10 ~~l~~l~g~~~~~~~~~~G~I~~~G~~i~~~--~~~~~ig~v~Q~~~~~~~ltv~e~l~~ 67 (156)
||+++++..+... -|.+.++|.++... ..+...|+++|+....+.+++.+++..
T Consensus 40 sGKSTl~~~L~~~----~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 40 SGKTTIAHGVADE----TGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp SCHHHHHHHHHHH----HCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh----hCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 4455555554431 37899988876432 112235778876554444555555543
No 171
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=22.88 E-value=25 Score=16.07 Aligned_cols=7 Identities=71% Similarity=1.312 Sum_probs=3.6
Q ss_pred CchhHHH
Q psy16753 2 NPRYFLL 8 (156)
Q Consensus 2 ~~~~~~~ 8 (156)
+||.|||
T Consensus 2 dprsfll 8 (26)
T 1nrp_R 2 DPRSFLL 8 (26)
T ss_pred cchhhhh
Confidence 4555553
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=20.78 E-value=62 Score=23.58 Aligned_cols=31 Identities=19% Similarity=0.051 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHhcCCCeeEEecCCCCCCCC
Q psy16753 107 SGGERKRVALAVQVSQDCSRVVKITDSQPRGKW 139 (156)
Q Consensus 107 SgGerqrv~LA~AL~~~p~ill~~~Dep~~g~~ 139 (156)
+++++.+..++.+...+|.+++ +||..+-.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~--iDEid~l~~ 127 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIF--IDEVDSLLS 127 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEE--EETGGGTSB
T ss_pred hHHHHHHHHHHHHHHcCCcEEE--eccHHHhcc
Confidence 4677888888888888888777 999866544
Done!