RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16753
(156 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 106 bits (267), Expect = 2e-27
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 24 SDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
G +LLNG+ ++ M +S +V Q DL + TLTV EH+ A L+M R + E+
Sbjct: 79 VKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR 138
Query: 84 RTVDALLKELGLLKCKNSVLNV------LSGGERKRVALAVQVSQD 123
VD +L+ LGL KC N+ + V LSGGERKR+A A ++ D
Sbjct: 139 ERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 82.3 bits (204), Expect = 5e-20
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 20 VHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
V GQIL NG + + K +V Q D+ + LTV E +T A L++ R
Sbjct: 57 VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD 116
Query: 80 VER-ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
R R D LL++L L + +++ +SGGER+RV++AVQ+ D
Sbjct: 117 AIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 69.8 bits (172), Expect = 2e-15
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 28 GQILLNGLEVEKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
G +NG + + G+ PQ D D LTV EH+ ARLK L E
Sbjct: 57 GTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKE 112
Query: 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
V+ LL+ LGL N LSGG +++++LA+
Sbjct: 113 EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAI 146
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 69.1 bits (169), Expect = 2e-14
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
G IL N + K ++ K +GFV Q D+ LTV E + + L++ ++L E+ +
Sbjct: 125 GTILANNRKPTKQIL-KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAE 183
Query: 88 ALLKELGLLKCKNSVLNV-----LSGGERKRVALA 117
+++ ELGL KC+N+++ +SGGERKRV++A
Sbjct: 184 SVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 63.1 bits (154), Expect = 1e-12
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 28 GQILLNGLEVEKNLMV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G+IL+ G +V K + G+VPQ LTV E++ ARL ER
Sbjct: 60 GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER--- 116
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
++ LL+ GL N + LSGG ++R+++A+
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIAL 149
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 58.3 bits (142), Expect = 3e-11
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 35/106 (33%)
Query: 14 LLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 73
L G+R +S G++L+NG ++K K+ G+VPQ D+ TLTV E + A+L+
Sbjct: 55 LAGRRTGLGVS---GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR- 110
Query: 74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQ 119
LSGGERKRV++A++
Sbjct: 111 -------------------------------GLSGGERKRVSIALE 125
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 51.8 bits (125), Expect = 8e-09
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 28 GQILLNGLEVEKNLMV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G I ++G +V K + G++PQ TV E + +A LK + E
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKAR 110
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
VD +L+ + L + LSGG R+RV +A
Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 51.8 bits (125), Expect = 1e-08
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVER 82
G+I + G V K G+VPQ +VD +TV + + + R L+ ++
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQK-SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ VD L+ +G+ ++ + LSGG+++RV LA
Sbjct: 118 EK-VDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 51.4 bits (124), Expect = 1e-08
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 28 GQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKM-DRNLHHVER 82
G+ILL+ ++ K M K + G++PQ LTV ++ +MA L++ +++L ER
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN--IMAVLEIREKDLKKAER 116
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+DALL+E + ++S LSGGER+RV +A
Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 48.5 bits (116), Expect = 4e-08
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 22 ELSDVDGQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNL 77
L G ILL+G + K+ G V Q LTV E L L+
Sbjct: 10 LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE--NLFFGLRDK--- 64
Query: 78 HHVERARTVDALLKELGLLKCKN-SVLNVLSGGERKRVALA 117
E + L+ +GL + + LSGG+++RVA+A
Sbjct: 65 ---EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIA 102
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 50.4 bits (120), Expect = 6e-08
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 23 LSDVDGQILLNGLEVEKNL-MVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
L G +L+ G ++E NL V+ S G PQH++ LTV EH+ A+LK
Sbjct: 980 LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWE 1036
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
E ++A+L++ GL +N LSGG ++++++A+ D VV
Sbjct: 1037 EAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
Score = 40.4 bits (94), Expect = 2e-04
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 30 ILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDAL 89
IL N +V +N+ G+ PQ D D LT EH+ L ARL R + E + +
Sbjct: 2003 ILTNISDVHQNM-----GYCPQFDAIDDLLTGREHLYLYARL---RGVPAEEIEKVANWS 2054
Query: 90 LKELGLLKCKNSVLNVLSGGERKRVALAV 118
++ LGL + + SGG +++++ A+
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAI 2083
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 49.1 bits (118), Expect = 9e-08
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 28 GQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
G+ILL+G ++ K M K + G++PQ LTV E+ ++A L++ R L ER
Sbjct: 55 GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEEN--ILAVLEI-RGLSKKERE 111
Query: 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++ LL+E + + S + LSGGER+RV +A
Sbjct: 112 EKLEELLEEFHITHLRKSKASSLSGGERRRVEIA 145
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 49.1 bits (118), Expect = 9e-08
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 27 DGQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH--- 79
G++LL+G ++ K L K+ +VPQ LTV+E + L+ R H
Sbjct: 56 SGEVLLDGKDIASLSPKELAKKL-AYVPQSPSAPFGLTVYE-LVLLGRYP-----HLGLF 108
Query: 80 ----VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDC 124
E V+ L+ LGL + ++ LSGGER+RV +A ++Q+
Sbjct: 109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 47.9 bits (115), Expect = 2e-07
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDT---LTVHE--HMTLMARLKMDRNLHHVER 82
G I + G +EK K G+VPQ ++D ++V + M L + R L ++
Sbjct: 54 GSIRVFGKPLEK--ERKRIGYVPQR-RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK 110
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
A+ VD L+ +GL + + + LSGG+++RV LA
Sbjct: 111 AK-VDEALERVGLSELADRQIGELSGGQQQRVLLA 144
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 45.9 bits (110), Expect = 1e-06
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 27 DGQILLNGLEVEKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARLKMD-----RNLH 78
G++L++G ++ K + ++ G V Q+ + ++ + NL
Sbjct: 55 SGEVLVDGKDLTKLSLKELRRKVGLVFQNP---------DDQFFGPTVEEEVAFGLENLG 105
Query: 79 --HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E V+ L+ +GL ++ LSGG+++RVA+A
Sbjct: 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA 146
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 44.7 bits (106), Expect = 5e-06
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G L+NG ++ + + G+V Q DL + T TV E + A L+ +++ E+ V
Sbjct: 820 GGDRLVNGRPLDSSFQ-RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYV 878
Query: 87 DALLKELGLLKCKNSVLNV----LSGGERKRVALAVQ 119
+ ++K L + ++V+ V L+ +RKR+ + V+
Sbjct: 879 EEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915
Score = 42.4 bits (100), Expect = 4e-05
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 18 RVVHELSDVDGQILLNGL---EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD 74
V+G I +G+ E++K+ V + + D+ LTV E + AR K
Sbjct: 110 NTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YNAETDVHFPHLTVGETLDFAARCKTP 168
Query: 75 RN----LHHVERARTV-DALLKELGLLKCKNSV-----LNVLSGGERKRVALA 117
+N + E A+ + D + GL +N+ + +SGGERKRV++A
Sbjct: 169 QNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 44.0 bits (104), Expect = 7e-06
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL 71
+ L+GQ + H++ + E L K GFV Q + + TL E++ L A L
Sbjct: 67 VSLVGQPL-HQMDE----------EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALL 115
Query: 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ + + A+ ALL++LGL K + + LSGGE++RVALA
Sbjct: 116 RGESSRQSRNGAK---ALLEQLGLGKRLDHLPAQLSGGEQQRVALA 158
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 42.7 bits (101), Expect = 2e-05
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 27 DGQILLNGLEV-EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLK-MDRNLHHVERAR 84
G IL G + + + + GFV QH +TV +++ R+K E
Sbjct: 56 SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
Query: 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V LLK + L + LSGG+R+RVALA
Sbjct: 116 KVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 41.7 bits (99), Expect = 3e-05
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 28 GQILLNGLEVEK---NLMVKVS----GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHH 79
G++L+NG ++ K + K+ GFV Q +L + LTV E++ L +
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGKSAGRR 118
Query: 80 VERARTVDALLKELGLLKCKNSVL-NVLSGGERKRVALA 117
A + LL+ LGL + LSGG+++RVA+A
Sbjct: 119 KRAA---EELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 41.7 bits (98), Expect = 4e-05
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 28 GQILLNGLEVEK-NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G+I LNG + + + + GFV QH LTV +++ L++ ++ +AR V
Sbjct: 55 GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAF--GLEIRKHPKAKIKAR-V 111
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ LL+ + L + N LSGG+R+RVALA
Sbjct: 112 EELLELVQLEGLGDRYPNQLSGGQRQRVALA 142
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 41.6 bits (98), Expect = 5e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 44 KVSGFVPQHDLTVD-TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 102
+ G V Q DL+VD LT E++ + ARL + ER +D LL +GLL+ + +
Sbjct: 73 RRIGIVFQ-DLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 103 LNVLSGGERKRVALA 117
+ SGG R+R+ +A
Sbjct: 129 VKTYSGGMRRRLEIA 143
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 41.4 bits (97), Expect = 5e-05
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
G++PQ L+V+++ LMA L++ +L +R + L++E + ++S+ L
Sbjct: 81 GYLPQEASIFRRLSVYDN--LMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSL 138
Query: 107 SGGERKRVALA 117
SGGER+RV +A
Sbjct: 139 SGGERRRVEIA 149
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 41.8 bits (98), Expect = 6e-05
Identities = 24/100 (24%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
++G I ++G ++ ++SG+ Q+D+ +TV E + A L++ + + E+
Sbjct: 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF 994
Query: 86 VDALLKELGLLKCKNSVLNV-----LSGGERKRVALAVQV 120
VD +++ + L K++++ + LS +RKR+ +AV++
Sbjct: 995 VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL 1034
Score = 39.8 bits (93), Expect = 3e-04
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 36/126 (28%)
Query: 25 DVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHM----------------TLM 68
V G+I NG + + + K S ++ Q+D+ V +TV E + + +
Sbjct: 220 KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSEL 279
Query: 69 ARLKMDRNLH---------------HVERARTVDALLKELGLLKCKNSV-----LNVLSG 108
AR + D + V+ + D LK LGL CK+++ + +SG
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG 339
Query: 109 GERKRV 114
G++KRV
Sbjct: 340 GQKKRV 345
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 40.9 bits (97), Expect = 6e-05
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
GFV Q + LT E++ L L ERA LL+ +GL N + L
Sbjct: 85 GFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE---ELLERVGLGDRLNHYPSEL 141
Query: 107 SGGERKRVALA 117
SGG+++RVA+A
Sbjct: 142 SGGQQQRVAIA 152
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 40.9 bits (97), Expect = 6e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 28 GQILLNGLEV-EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G++L++G V G+V Q D + LTV +++ L L + + E
Sbjct: 59 GEVLVDGEPVTGPGPDR---GYVFQQDALLPWLTVLDNVALGLEL---QGVPKAEARERA 112
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ LL+ +GL +N+ + LSGG R+RVALA
Sbjct: 113 EELLELVGLSGFENAYPHQLSGGMRQRVALA 143
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 40.1 bits (95), Expect = 2e-04
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 22 ELSDVDGQILLNGLEVEK---NLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNL 77
ELS G++ LNG + + + +PQH L+ TV E + M R L
Sbjct: 51 ELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP-FTVEE-VVAMGR--APHGL 106
Query: 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV-VKITDSQPR 136
E V A L ++ L LSGGE++RV LA RV ++ +
Sbjct: 107 SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA--------RVLAQLWEPDGP 158
Query: 137 GKW-----PISAL 144
+W P SAL
Sbjct: 159 PRWLLLDEPTSAL 171
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 39.8 bits (94), Expect = 2e-04
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVD 87
G++LL+G V G+V Q D + LTV +++ L L+ E
Sbjct: 58 GEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK---AEARERAK 112
Query: 88 ALLKELGLLKCKNSVLNVLSGGERKRVALA 117
LL+ +GL ++ + LSGG R+RVA+A
Sbjct: 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIA 142
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 38.8 bits (91), Expect = 3e-04
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 23 LSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVD----TLTVHEHMTLMARLKMDRNLH 78
+ + G ILLNG ++ K G+V Q VD T +V E + L + N
Sbjct: 50 IKESSGSILLNGKPIKAKERRKSIGYVMQD---VDYQLFTDSVREELLLGLKELDAGN-- 104
Query: 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDC 124
E+A TV LK+L L K LSGG+++R+A+A +
Sbjct: 105 --EQAETV---LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 38.3 bits (90), Expect = 6e-04
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 28 GQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHH 79
G I+++GL++ L KV G V Q LTV E++TL + M +
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKV-GMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-EA 112
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
ERA LL+++GL ++ LSGG+++RVA+A
Sbjct: 113 EERAL---ELLEKVGLADKADAYPAQLSGGQQQRVAIA 147
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 38.0 bits (89), Expect = 6e-04
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 14 LLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKM 73
+L R + G+IL+NG ++KN + +G+V Q D+ LTV E + A L
Sbjct: 52 VLAGRK--TAGVITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALL-- 106
Query: 74 DRNLHHVERART 85
R L +R R
Sbjct: 107 -RGLSVEQRKRL 117
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 38.5 bits (90), Expect = 6e-04
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 20/113 (17%)
Query: 23 LSDVDGQILLNGLEV----EKNLMVKVSGFVPQHDLTVDTLTVHE--------HMTLMAR 70
L+ G + L + + L +++ +PQH LT + +TV E ++L R
Sbjct: 52 LTPQSGTVFLGDKPISMLSSRQLARRLA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGR 110
Query: 71 LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
L + V +A +++ + + L LSGG+R+R LA+ ++QD
Sbjct: 111 LS-AEDNARVNQA------MEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 38.0 bits (89), Expect = 8e-04
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 22/101 (21%)
Query: 27 DGQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHH 79
G+IL++G +V ++ + V Q+ +TV+E++ +L + +
Sbjct: 57 SGEILIDGRDVTDLPPEKRGI-----AMVFQNYALYPHMTVYENIAFGLKLRGVPKA--- 108
Query: 80 VERARTVDALLKELGL---LKCKNSVLNVLSGGERKRVALA 117
E + V + K LGL L K LSGG+R+RVALA
Sbjct: 109 -EIDKRVKEVAKLLGLEHLLNRK---PLQLSGGQRQRVALA 145
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 38.0 bits (89), Expect = 8e-04
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 28 GQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-------KMD 74
G ILL G ++ + + + G + QH ++ LTV E++ L RL +
Sbjct: 57 GSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLL 115
Query: 75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
++ R + AL + +GL + LSGG+++RVA+A ++Q
Sbjct: 116 GRFSEEDKERALSAL-ERVGLADKAYQRADQLSGGQQQRVAIARALAQQ 163
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 37.4 bits (87), Expect = 0.001
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
GFV Q + LT E++ L L+ + + A+ ALL+ +GL K L
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGLGKRLTHYPAQL 147
Query: 107 SGGERKRVALA 117
SGGE++RVALA
Sbjct: 148 SGGEQQRVALA 158
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 37.2 bits (87), Expect = 0.001
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 28 GQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81
G+IL+NG ++ + + + G V Q + TV+E++ L R+ E
Sbjct: 57 GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV---IGKPPRE 113
Query: 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
R V +L +GL ++ + LSGGE++RVA+A
Sbjct: 114 IRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 37.2 bits (87), Expect = 0.001
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 27 DGQILLNGLEVEKNLMVKVS-------GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
GQ+ LNG E K S G++ Q+ ++ TV E++ L + K L
Sbjct: 52 SGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSK 108
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E+ L+++GL + LSGGE++RVALA
Sbjct: 109 KEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALA 146
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 36.7 bits (86), Expect = 0.002
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 28 GQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL-MARLKMDRNLHHV 80
G+IL++G +V +N+ G V Q LTV E++ + + +
Sbjct: 55 GEILIDGRDVTGVPPERRNI-----GMVFQDYALFPHLTVAENIAFGLKLRGVPKA---- 105
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E V LL+ +GL N + LSGG+++RVALA
Sbjct: 106 EIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALA 142
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 35.9 bits (83), Expect = 0.004
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 28 GQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH---- 79
G+ILL+ +E K KV+ ++PQ L E MT+ + + R H
Sbjct: 66 GEILLDAQPLESWSSKAFARKVA-YLPQQ------LPAAEGMTVRELVAIGRYPWHGALG 118
Query: 80 ---VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPR 136
V+ + +GL + +++ LSGGER+R +A+ V+QD SR + + +
Sbjct: 119 RFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD-SRCLLLDE---- 173
Query: 137 GKWPISALFI 146
P SAL I
Sbjct: 174 ---PTSALDI 180
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 35.5 bits (83), Expect = 0.004
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 75 RNLHHVERARTVDAL---LKELGLLKCKNSVLNVLSGGERKRVALA 117
+L E AR + + L+ LGL + N LSGGER+RV LA
Sbjct: 64 ASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 36.0 bits (84), Expect = 0.004
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 26 VDGQILLNGLEV-------EKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMARLKMDRN 76
G+++L+G ++ + L K + Q +T +T+ + + RL
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--K 123
Query: 77 LHHVERARTVDALLKELGLL--KCKNSVLNVLSGGERKRVALAVQVSQD 123
E + LL+++GL + ++ + LSGG R+RV +A+ ++
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172
Score = 34.5 bits (80), Expect = 0.018
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 64 HMT----LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGERKRVA 115
MT L L++ ER V LL+ +GL L+ LSGG+R+RVA
Sbjct: 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGL---PPEFLDRYPHELSGGQRQRVA 439
Query: 116 LA 117
+A
Sbjct: 440 IA 441
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 35.7 bits (83), Expect = 0.005
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 27 DGQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL-----MARLKMDR 75
G+IL NG+++ E + + G + Q V L+V E++ L + +
Sbjct: 58 SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 76 NL-HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
L ++A+ +DAL + +G+L + LSGG+++RVA+A + Q
Sbjct: 118 GLFSKEDKAQALDAL-ERVGILDKAYQRASTLSGGQQQRVAIARALVQQ 165
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 35.6 bits (82), Expect = 0.005
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHD--------LTVDTLTV--HEHMTLMARLKM-DRN 76
G+I + G + L + +VPQ + L D + + + HM + R K DR
Sbjct: 62 GKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQ 121
Query: 77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
+ V A L + +++ ++ + LSGG++KRV LA ++Q
Sbjct: 122 I--------VTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 35.4 bits (82), Expect = 0.007
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 28 GQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
G+I LNG + + V GFV QH +TV +++ +++ +R E
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER-PSEAEIR 115
Query: 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V+ LL+ + L + LSGG+R+RVALA
Sbjct: 116 ARVEELLRLVQLEGLADRYPAQLSGGQRQRVALA 149
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 35.1 bits (81), Expect = 0.007
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 23 LSDVDGQILLNGLEVEKNLM--VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
L G++ ++G++ ++ + G + LT E++ ARL L
Sbjct: 52 LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRK 108
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
E + L K L LL+ + + S G +++VA+A + D S +V
Sbjct: 109 EIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV 156
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 34.9 bits (81), Expect = 0.008
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 28 GQILLNGLEVEKNL----MVKVSGFVPQH-DLTVDTLTVHEHMTLMAR-LKMDRNLHHVE 81
G++L++GL+ + + G V Q+ D + TV + + L + R E
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE----E 114
Query: 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
V L+ +GL + + LSGG+++RVA+A ++
Sbjct: 115 IEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 34.7 bits (80), Expect = 0.011
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 28 GQILLNGLEVEK------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81
G I +NG +V + + G V Q + V+E++ + + E
Sbjct: 56 GTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPRE 112
Query: 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ V A L+ +GL ++ LSGGE++RVA+A
Sbjct: 113 IRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA 148
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 34.2 bits (79), Expect = 0.014
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 30/96 (31%)
Query: 26 VDGQILLNGLEVEKNLMV--KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
V+G I NG+ ++ +V + D+ TLTV E
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE-------------------- 102
Query: 84 RTVDALLKELGLLKCK-NSVLNVLSGGERKRVALAV 118
T+D L+CK N + +SGGERKRV++A
Sbjct: 103 -TLDF------ALRCKGNEFVRGISGGERKRVSIAE 131
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 34.4 bits (79), Expect = 0.014
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 47 GFVPQ-HDLTVDTLTVHEHMTLMARLKMDRNLHHVERA--RTVDALLKELGLLKCKNSVL 103
G+VPQ H+ D H + R L A V L+ +GL + + +
Sbjct: 52 GYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV 111
Query: 104 NVLSGGERKRVALA 117
LSGG+R+RV +A
Sbjct: 112 GELSGGQRQRVLVA 125
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 34.3 bits (79), Expect = 0.017
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 28 GQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G + G +V + + + G VPQ+ + LT E++ +M RL L E
Sbjct: 48 GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL---YGLPKDEAEER 104
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ LL+ L + + + SGG R+R+ +A
Sbjct: 105 AEELLELFELGEAADRPVGTYSGGMRRRLDIA 136
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 33.9 bits (78), Expect = 0.018
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 22 ELSDVDGQILLNGL---EVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLH 78
ELS G++ LNG+ + + +PQ+ TV E + M R+
Sbjct: 50 ELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE-VVQMGRIPHRSGRE 108
Query: 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRV-VKITDSQPRG 137
E R L L LSGGE++RV LA RV ++ P G
Sbjct: 109 PEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLA--------RVLAQLWPPVPSG 160
Query: 138 KW-----PISALFI 146
+W P SAL I
Sbjct: 161 RWLFLDEPTSALDI 174
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 33.9 bits (78), Expect = 0.019
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
+ K L + + + + LSGGE +RVA+A +S+D
Sbjct: 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKD 133
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 33.8 bits (78), Expect = 0.020
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 28 GQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMD--RNLHHVE 81
G ILL+G + K V Q +++ T + R+ + R +
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDP----YSSLNPRRT-VGRILSEPLRPHGLSK 116
Query: 82 RARTVDALLKELGLLKCKNSVL----NVLSGGERKRVALA 117
+ + LL ++GL S L + LSGG+R+R+A+A
Sbjct: 117 SQQRIAELLDQVGL---PPSFLDRRPHELSGGQRQRIAIA 153
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 34.0 bits (79), Expect = 0.020
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
++K L L + + + LSGGE +RVA+A +S+D
Sbjct: 437 IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRD 471
Score = 34.0 bits (79), Expect = 0.021
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
D +++ LGL + ++ LSGGE +RVA+A + +D
Sbjct: 194 DEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 33.9 bits (78), Expect = 0.021
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 59 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
LTV +++ L L L+ +R + V+A ++GL + LSGG+R+RVALA
Sbjct: 86 LTVAQNIGL--GLSPGLKLNAEQREK-VEAAAAQVGLAGFLKRLPGELSGGQRQRVALA 141
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 33.4 bits (77), Expect = 0.026
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
G++ Q + LT +++ + L+ NL + E A+L+ +GL + + L
Sbjct: 85 GYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNL 142
Query: 107 SGGERKRVALA 117
SGG+++RVA+A
Sbjct: 143 SGGQKQRVAIA 153
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 33.4 bits (77), Expect = 0.026
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 28 GQILLNG---LEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
G I+LNG + K + + G V Q L V E++ + K +R
Sbjct: 52 GTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNR----- 106
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E +VD LL LGL N LSGGE++RVALA
Sbjct: 107 EDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA 143
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 33.6 bits (77), Expect = 0.027
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G I LNG +E + G V Q++ + L V +++ +L R + +R
Sbjct: 58 SRGSIQLNGRRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQL---RGIEKAQRREI 112
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+L +GL ++ + LSGG R+RV +A
Sbjct: 113 AHQMLALVGLEGAEHKYIWQLSGGMRQRVGIA 144
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 33.6 bits (77), Expect = 0.029
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
A V + L LGL + ++ V + LSGGE+KRVA+A
Sbjct: 115 AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA 149
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 33.1 bits (76), Expect = 0.033
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 6 FLLFSGIHLLGQRVVHELSDVDGQILLNG--LEVEKNLMVKVS---GFVPQH-DLTVDTL 59
FL F+GI L G++L+ G ++ +K +++V G V Q+ D +
Sbjct: 45 FLHFNGI----------LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94
Query: 60 TVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
TV E + A ++ L E + V LK +G+ +N + LSGG++KRVA+A
Sbjct: 95 TVEEDV---AFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA 149
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 32.9 bits (75), Expect = 0.041
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 25 DVDGQILLNGLEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
G++ LN ++ M+ + G + Q L L+V +++ + L
Sbjct: 57 SCTGELWLNEQRLD---MLPAAQRQIGILFQDALLFPHLSVGQNLLF----ALPATLKGN 109
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 116
R +A L+ GL + LSGG+R RVAL
Sbjct: 110 ARRNAANAALERSGLDGAFHQDPATLSGGQRARVAL 145
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 32.7 bits (76), Expect = 0.042
Identities = 9/14 (64%), Positives = 14/14 (100%)
Query: 104 NVLSGGERKRVALA 117
N+LSGG+R+R+A+A
Sbjct: 95 NILSGGQRQRIAIA 108
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 32.6 bits (75), Expect = 0.045
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
R V A L+++GL ++ LSGGE++RVA+A
Sbjct: 116 RRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 33.0 bits (76), Expect = 0.046
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 44 KVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK--N 100
G+ QH D TV E ++ D + V A L G +
Sbjct: 385 VKIGYFDQHRDELDPDKTVLEELS---EGFPDGDEQEVR------AYLGRFGF-TGEDQE 434
Query: 101 SVLNVLSGGERKRVALA 117
+ VLSGGE+ R+ LA
Sbjct: 435 KPVGVLSGGEKARLLLA 451
Score = 30.7 bits (70), Expect = 0.25
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 65 MTLMARL--KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
L+A L ++ AR + L LG ++ ++ LSGG R+RVALA
Sbjct: 113 DELLAELEALLEELDGWTLEAR-AEEALLGLGFPD-EDRPVSSLSGGWRRRVALA 165
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 33.0 bits (75), Expect = 0.047
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 23 LSDVDGQILLNGLEVEKNLMVKVS---GFVPQHDLTVDTLTVHE--------HMTLMARL 71
++ G + L+G ++ +V+ G + Q+ T +TV E H L R
Sbjct: 57 MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW 116
Query: 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS 125
+ E V ++ G+ + ++ LSGG+R+R +A+ ++Q+ +
Sbjct: 117 RK-------EDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 32.7 bits (75), Expect = 0.048
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 72 KMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
M R E A V LL +GL + LSGG+++RVALA
Sbjct: 105 GMGRA----EVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA 146
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 32.3 bits (74), Expect = 0.057
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 28 GQILLNGLEV-----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82
G+ILLNG ++ EK + +VPQ+ +TV++++ + + E
Sbjct: 54 GKILLNGKDITNLPPEKRDI----SYVPQNYALFPHMTVYKNIAYGLKKRKVDK---KEI 106
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
R V + + LG+ N LSGGE++RVA+A
Sbjct: 107 ERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 32.3 bits (74), Expect = 0.076
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 28 GQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
G+I ++GLE+ K L K+S + Q + LTV + + R + E
Sbjct: 56 GEITIDGLELTSTPSKELAKKLS-ILKQENHINSRLTVRD-LVGFGRFPYSQGRLTKEDR 113
Query: 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
R ++ ++ L L + L+ LSGG+R+R +A+ ++QD
Sbjct: 114 RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 31.9 bits (73), Expect = 0.083
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 28 GQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
GQIL++G++V K NL+ +V F T LT+ E++ L R L
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARV--FQDPLAGTAPELTIEENLALAESRGKKRGLSSA 118
Query: 81 ERARTVD---ALLKEL--GLLKCKNSVLNVLSGGERKRVALA 117
R L L GL + + +LSGG+R+ ++L
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 32.3 bits (74), Expect = 0.085
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
ER + D +++ LGL + ++ LSGGE +RVA+A + +D
Sbjct: 190 ERGK-FDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRD 231
Score = 30.3 bits (69), Expect = 0.33
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 89 LLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
++K L L ++ LSGGE +RVA+A +S++
Sbjct: 439 IVKPLNLEDLLERPVDELSGGELQRVAIAAALSRE 473
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 32.1 bits (74), Expect = 0.088
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 27 DGQILLNGLEV----EKNLMVKVSGFVPQ------HDLTVDTLTVHEHMTL--MARLKMD 74
G I ++G +V + + + G V Q H LTV E++TL + K+
Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH------LTVLENVTLAPVKVKKLS 109
Query: 75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ E+A LL+++GL ++ LSGG+++RVA+A
Sbjct: 110 KAEAR-EKAL---ELLEKVGLADKADAYPAQLSGGQQQRVAIA 148
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 31.8 bits (73), Expect = 0.097
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 19/103 (18%)
Query: 27 DGQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR--LKMDRNLH 78
G+IL++G ++ E + K G + Q +LTV E++ R K+ +L
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLI 121
Query: 79 HVERARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 117
V L+ +GL + + ++ LSGG RKRVALA
Sbjct: 122 R----ELVLMKLELVGL---RGAAADLYPSELSGGMRKRVALA 157
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 31.9 bits (73), Expect = 0.097
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 71 LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
LK+ + L E V+ L+ +GL + + LSGG+++RVALA
Sbjct: 102 LKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALA 148
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 31.7 bits (72), Expect = 0.097
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL----TVHEHMTLMARLKMDRN----LHH 79
G++L+NG++V P D V L + H+T+ + + + L
Sbjct: 53 GRVLINGVDV---------TAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTA 103
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+R ++ L +GL + + LSGGER+RVALA
Sbjct: 104 EDRQA-IEVALARVGLAGLEKRLPGELSGGERQRVALA 140
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 31.7 bits (73), Expect = 0.10
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 28 GQILLNGLEV------EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVE 81
G++L++G ++ E + + G + Q D+LTV E++ L+ L E
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP--LREHTRLSEEE 112
Query: 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V L+ +GL ++ LSGG +KRVALA
Sbjct: 113 IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 31.5 bits (72), Expect = 0.12
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 59 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
+ V + + +A+LK L E R +D L+ L L + N + LS G +++V
Sbjct: 85 MKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIA 141
Query: 119 QVSQD 123
V D
Sbjct: 142 AVIHD 146
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 31.6 bits (72), Expect = 0.12
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
L+ E++ A + H RT++ L +GL ++ LS G+++R+ALA
Sbjct: 87 ELSALENLHFWAAI-------HGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALA 139
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 31.6 bits (73), Expect = 0.13
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 104 NVLSGGERKRVAL 116
LSGGER+RVAL
Sbjct: 162 TKLSGGERRRVAL 174
Score = 28.9 bits (66), Expect = 1.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 105 VLSGGERKRVALA 117
VLSGGER R+ LA
Sbjct: 445 VLSGGERNRLHLA 457
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 31.2 bits (71), Expect = 0.14
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 21 HELSDVD----GQILLNGLEVEK-------NLMVKVSGFVPQ-HDLTVDTLTVHEHMTLM 68
H L +D G++L NG + K L K GF+ Q H L D T E++ +
Sbjct: 49 HLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD-FTALENVAMP 107
Query: 69 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ ERA +L+++GL N + LSGGER+RVA+A
Sbjct: 108 LLIGKKSVKEAKERAY---EMLEKVGLEHRINHRPSELSGGERQRVAIA 153
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 31.0 bits (71), Expect = 0.19
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 31 LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART-VDAL 89
L GL V +N+ V H + L L R AR L
Sbjct: 90 LFPGLTVLENVAV----------------GAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 90 LKELGLLKCKNSVLNVLSGGERKRVALA 117
L+ +GL + + LS G+++R+ +A
Sbjct: 134 LEFVGLGELADRPAGNLSYGQQRRLEIA 161
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 30.9 bits (71), Expect = 0.21
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHM--TLMARLKMDRNLHHVE 81
DG+ LL + + K V Q ++ +T+ E + L K+ +
Sbjct: 64 FDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK---KEA 120
Query: 82 RARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 117
R V LL +GL + VLN LSGG+R+RVA+A
Sbjct: 121 RKEAVLLLLVGVGLPE---EVLNRYPHELSGGQRQRVAIA 157
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 30.9 bits (70), Expect = 0.23
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 26 VDGQ-ILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVERA 83
V G+ +L N EV++N+ G++P+H+ + V E++ +A + M L
Sbjct: 61 VCGEDVLQNPKEVQRNI-----GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL----LK 111
Query: 84 RTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ V+ +++ +GL ++ + LS G R+RV LA
Sbjct: 112 QRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLA 145
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 30.6 bits (69), Expect = 0.29
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 6 FLLFSGIHLLGQRVVHELSDVDGQILLNGLEVE---KNLM--VKVSGFV---PQHDLTVD 57
F +GI L G+IL +G ++ K LM + G V P + L
Sbjct: 49 FQNLNGI----------LKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF-- 96
Query: 58 TLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ +V++ ++ A ++ L E + VD LK G+ K+ + LS G++KRVA+A
Sbjct: 97 SASVYQDVSFGA---VNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 153
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 30.5 bits (69), Expect = 0.29
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ E R V LK++ +L+ + N LSGG+++RVA+A
Sbjct: 116 YDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIA 154
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 30.6 bits (69), Expect = 0.30
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
VDGQ L E + G + QH + + TV ++ L L + ++R
Sbjct: 64 VDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKR--K 120
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
V LL +GL +S + LSGG+++RVA+A ++ +
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 29.9 bits (68), Expect = 0.35
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 104 NVLSGGERKRVALA 117
N+LSGG+R+R+ LA
Sbjct: 95 NILSGGQRQRLGLA 108
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 30.2 bits (69), Expect = 0.37
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 78 HHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
+RA A L+ +GLL + LSGG+++RVA+A + Q
Sbjct: 120 EEKQRAL---AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ 162
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 29.5 bits (67), Expect = 0.39
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 106 LSGGERKRVALAVQVSQDCS 125
LSGG+R+RVALA + +
Sbjct: 81 LSGGQRQRVALARALLLNPD 100
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 29.9 bits (68), Expect = 0.40
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 24/101 (23%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDT----------LTVHEHMTLMARLK-MDRN 76
G+ILL+G ++ +P H V+T LTV E++ RLK + +
Sbjct: 55 GEILLDGKDITN---------LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA 105
Query: 77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E V L + L N + LSGG+++RVA+A
Sbjct: 106 ----EIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 29.9 bits (68), Expect = 0.41
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E V LL+ +GL ++ LSGG+++RV +A
Sbjct: 116 EIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA 152
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 30.3 bits (69), Expect = 0.42
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 104 NVLSGGERKRVALA 117
LSGGER+RVAL
Sbjct: 160 TKLSGGERRRVALC 173
Score = 27.6 bits (62), Expect = 3.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 105 VLSGGERKRVALA 117
LSGGER RV LA
Sbjct: 443 QLSGGERNRVHLA 455
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 30.2 bits (68), Expect = 0.42
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL----TVHEHMTLMAR----LKMDRNLHH 79
G I+L+G +V VP H ++ + + HMT+ LKM R +
Sbjct: 25 GSIMLDGEDVTN---------VPPHLRHINMVFQSYALFPHMTVEENVAFGLKM-RKVPR 74
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E V L+ + L + + + LSGG+++RVALA
Sbjct: 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 30.2 bits (68), Expect = 0.43
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 88 ALLKELGL-LKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWP 140
++L +LGL L LSGGE++R ALA + + + I D G P
Sbjct: 458 SILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHP 511
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 30.1 bits (68), Expect = 0.43
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 82 RARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
R R VD LK++G+ + + ++LSGG+++RVA+A
Sbjct: 122 RER-VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 30.1 bits (68), Expect = 0.46
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
ER + VD L+ +GL + + LSGG ++RV LA
Sbjct: 140 ERRKRVDEQLELVGLAQWADRKPGELSGGMQQRVGLA 176
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 29.8 bits (68), Expect = 0.51
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 26 VDGQILLNG---LEVEKNLMVKVSG----FVPQHDLTV--DTLTVHEHM--TLMARLKMD 74
V G+IL +G L + + + K+ G + Q +T +T+ + + L K
Sbjct: 63 VGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL 122
Query: 75 RNLHHVERARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 117
ERA LL+ +G+ L LSGG R+RV +A
Sbjct: 123 SKKEAKERAI---ELLELVGI-PDPERRLKSYPHELSGGMRQRVMIA 165
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 29.7 bits (67), Expect = 0.58
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
ER L+ +GL + N LSGG ++RV LA
Sbjct: 140 EREERALEALELVGLEGYADKYPNELSGGMQQRVGLA 176
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 29.3 bits (66), Expect = 0.62
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E R V L +G + + LSGGE+KRVA+A
Sbjct: 103 EVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIA 139
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 29.5 bits (67), Expect = 0.70
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 117
ER V LL+++GL L LSGG+R+R+ +A
Sbjct: 84 ERRERVLELLEKVGL---PEEFLYRYPHELSGGQRQRIGIA 121
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 29.4 bits (66), Expect = 0.70
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 28 GQILLNGLEVEK--------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
GQI+L+G+++ N+M + P +TV +++ LK D+ L
Sbjct: 74 GQIMLDGVDLSHVPPYQRPINMMFQSYALFPH-------MTVEQNIAF--GLKQDK-LPK 123
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E A V+ +L + + + + LSGG+R+RVALA
Sbjct: 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA 161
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 29.4 bits (66), Expect = 0.71
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
RA +L +GL N + LSGGER+RVA+A
Sbjct: 124 SRALE---MLAAVGLEHRANHRPSELSGGERQRVAIA 157
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 29.3 bits (66), Expect = 0.74
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
D L+ +L L + ++ LSGGE +RVA+A +++D
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARD 157
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 29.2 bits (66), Expect = 0.76
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
L+ +R + A+ +++G+ + LSGG+R+RVALA
Sbjct: 102 LNAAQR-EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALA 141
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 28.9 bits (66), Expect = 0.84
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVL-NV 105
G+VP+ LTV E++ L A + +R ++ + + LK + L
Sbjct: 78 GYVPEGRRIFPELTVEENLLLGAYARRRA-----KRKARLERVYELFPRLKERRKQLAGT 132
Query: 106 LSGGERKRVALA 117
LSGGE++ +A+A
Sbjct: 133 LSGGEQQMLAIA 144
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid
transport, and lantibiotic immunity. In bacteria and
archaea, these transporters usually include an
ATP-binding protein and one or two integral membrane
proteins. Eukaryotic systems of the ABCA subfamily
display ABC domains that are quite similar to this
family. The ATP-binding domain shows the highest
similarity between all members of the ABC transporter
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 28.9 bits (66), Expect = 0.84
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 28 GQILLNGLEVEKN--LMVKVSGFVPQHDLTVDTLTVHEHMTL 67
G+I + G +++K + + G++P+ + LTV E++ L
Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL 96
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 29.4 bits (67), Expect = 0.86
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 28 GQILLNGLEVEKNLMVKVS--------GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
G+I ++G EV +K G V QH + V TLTV E++ L +
Sbjct: 59 GEIRVDGKEVR----IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR 114
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRV 114
+ + L + GL ++ + LS GE++RV
Sbjct: 115 RQARARIKELSERYGLPVDPDAKVADLSVGEQQRV 149
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 29.1 bits (65), Expect = 0.92
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 84 RTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQV 120
R V A L ++GLL K KN + LSGGE++RV +A V
Sbjct: 116 RRVSAALDKVGLLDKAKNFPIQ-LSGGEQQRVGIARAV 152
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 29.2 bits (66), Expect = 0.96
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 28 GQILLNGLEVE--------KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
G+I +NG+++ K + +V Q+ + T+ E++ L + D +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQI-----SWVSQNPY-LFAGTIRENILL---ARPDASDEE 426
Query: 80 VERARTVDALLKELGLLKCKNSVL----NVLSGGERKRVALA 117
+ A LL+ + ++V+ LSGG+ +R+ALA
Sbjct: 427 IIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 28.6 bits (65), Expect = 1.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 52 HDLTV-DTLTVHEHMTLMARLKMDRNLHHVERAR-TVDALLKELGLLKCKNSVLNVLSGG 109
+LTV + + V + L + R AR + LL+ +GL + LS G
Sbjct: 88 PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYG 147
Query: 110 ERKRVALA 117
+++R+ +A
Sbjct: 148 QQRRLEIA 155
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 106 LSGGERKRVALA 117
LSGGE+ R+ALA
Sbjct: 71 LSGGEKMRLALA 82
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 28.8 bits (65), Expect = 1.2
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 14 LLGQRVVHELSDVDGQILLNGLEV----EKNLMVKVSGFVPQHDLTVDTLTVHEHMTL-- 67
LLG E G I +NG+ + + ++ +VPQH T+ E++ L
Sbjct: 368 LLGFVDPTE-----GSIAVNGVPLADADADSWRDQI-AWVPQHPFLFAG-TIAENIRLAR 420
Query: 68 --MARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ ++ L V AL + L + LSGG+ +R+ALA
Sbjct: 421 PDASDAEIREALERAGLDEFVAALPQGLDTPIGEGG--AGLSGGQAQRLALA 470
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 28.4 bits (64), Expect = 1.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 106 LSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPISALFI 146
LSGGE +L++ ++ S V+ Q RG + ALFI
Sbjct: 124 LSGGETFLASLSLALA--LSEVL-----QNRGGARLEALFI 157
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 28.6 bits (65), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 57 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 116
LT E++ RL + +AL + +GL ++ + LS G+++RVAL
Sbjct: 87 TELTALENLRFYQRLH-----GPGDDEALWEALAQ-VGLAGFEDVPVRQLSAGQQRRVAL 140
Query: 117 A 117
A
Sbjct: 141 A 141
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 28.6 bits (64), Expect = 1.2
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 27 DGQILLNGLEVEKNLMV----KVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVER 82
+G IL++G+++ K + V + G V Q + TV +++ LK ++N+ VE
Sbjct: 57 EGSILIDGVDI-KTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVD-VEY 113
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVVKITDSQPRGKWPIS 142
++ L KE KN LSGGE +RV++A ++ + V + D P S
Sbjct: 114 YLSIVGLNKEYATRDVKN-----LSGGEAQRVSIARTLANNPE--VLLLDE------PTS 160
Query: 143 ALFITTASSVEE 154
AL T+ +EE
Sbjct: 161 ALDPTSTEIIEE 172
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 28.5 bits (63), Expect = 1.6
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 28 GQILLNGLEVEKNLMVKVSGFVPQH-DLTVDTLTVHEHMTLMARLKMDRNLHHV----ER 82
GQ+L++G+++ K ++ + + + + HMT++ L + R
Sbjct: 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERR 142
Query: 83 ARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ +DAL +++GL +S + LSGG R+RV LA
Sbjct: 143 EKALDAL-RQVGLENYAHSYPDELSGGMRQRVGLA 176
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 28.2 bits (63), Expect = 1.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
RAR LL ++GL + S LSGG+++RVA+A
Sbjct: 122 TARAR---ELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 28.4 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 104 NVLSGGERKRVALAVQVSQDCSRVVKITD 132
LSGGE +R+ LA Q+ + V+ + D
Sbjct: 487 GTLSGGEAQRIRLATQIGSGLTGVLYVLD 515
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 28.0 bits (63), Expect = 1.7
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 59 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+TV++++ +L+ ER R V LL+ LL K L SGG+R+RVAL
Sbjct: 87 MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQL---SGGQRQRVALG 142
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 28.2 bits (63), Expect = 1.9
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E + V +L ++G+L +S LSGG+++RVA+A
Sbjct: 119 EMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIA 155
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 27.9 bits (62), Expect = 2.0
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 59 LTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
LTV +++ L L L+ ++ + VDA +++G+ + + LSGG+R+RVALA
Sbjct: 85 LTVRQNIGL--GLHPGLKLNAEQQEKVVDAA-QQVGIADYLDRLPEQLSGGQRQRVALA 140
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 28.0 bits (63), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 65 MTLMARLKMDRNLHHVERART---VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+++ L+ LH + RA + LL LGL + + + L+GG R+RV +A
Sbjct: 89 LSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIA 144
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 27.5 bits (62), Expect = 2.7
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGG+++RVALA
Sbjct: 101 LSGGQQQRVALA 112
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 105 VLSGGERKRVALAVQV 120
V SGGE R+ALA+QV
Sbjct: 430 VASGGELSRIALAIQV 445
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 27.5 bits (62), Expect = 2.7
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 18 RVVHELSD------VDGQILLNGLEVEKNLMVKVS-----GFVPQHDLTVDTLTVHEHMT 66
R+++ L+D +G++LL+G ++ + + G V Q ++++++
Sbjct: 44 RLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK-PNPFPGSIYDNVA 102
Query: 67 LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNV--LSGGERKRVALA 117
RL + E V+ L++ L L+ LSGG+++R+ LA
Sbjct: 103 YGLRLHGIKL--KEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 27.7 bits (62), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 99 KNSVLNVLSGGERKRVALAV 118
KN L++LSGGE+ ALA+
Sbjct: 1083 KNQNLSLLSGGEKALTALAL 1102
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 27.6 bits (62), Expect = 2.8
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 27 DGQILLNGLE---VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
GQIL++G++ + + + + G V Q T+M +++ R E
Sbjct: 57 KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-------TIMENIRLGRPNATDEE- 108
Query: 84 RTVDALLKELG-------LLKCKNSVLN----VLSGGERKRVALAVQVSQD 123
V KE G L ++VL LS GER+ +A+A + +D
Sbjct: 109 --VIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 27.6 bits (62), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 104 NVLSGGERKRVALAVQVSQDCSRVVKITD 132
LSGGE +R+ LA Q+ + V+ + D
Sbjct: 136 PTLSGGEAQRIRLATQIGSGLTGVLYVLD 164
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 27.3 bits (61), Expect = 3.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 106 LSGGERKRVALAVQVSQDCSRVV 128
SGGER+R+ALA + QD V+
Sbjct: 99 FSGGERQRLALARILLQDAPIVL 121
>gnl|CDD|150555 pfam09895, DUF2122, RecB-family nuclease (DUF2122). This domain,
found in various hypothetical archaeal proteins, has no
known function.
Length = 105
Score = 26.5 bits (59), Expect = 3.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 12 IHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSG 47
I LL VV+ LS I L+VE +++ SG
Sbjct: 32 IELLKPDVVYLLSRAAEGIKKEVLKVEGRVLLVFSG 67
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 27.5 bits (61), Expect = 3.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
A VD L L + ++ LSGGER+RV +A ++Q+
Sbjct: 113 HDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 27.5 bits (62), Expect = 3.4
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 27 DGQILLNGLEVEKNLMVKVS-----GFVPQHDLTVDTLTVHEHMTLMARLK-----MDRN 76
G+IL++G V + + V Q V L+V E++ L +DR
Sbjct: 62 SGEILIDGKPVA-FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRK 120
Query: 77 LHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
RAR LL LGL ++++ LS +R+ V +A +S D +RV+
Sbjct: 121 AMR-RRAR---ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD-ARVL 167
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 27.3 bits (60), Expect = 3.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA--VQVSQDC 124
+E + VD L E+GL K ++ LSGG+ + VALA + + +C
Sbjct: 111 IEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 27.4 bits (61), Expect = 3.7
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 28 GQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
G+IL++G+++ +L ++ G V Q L T+ E++ L D +
Sbjct: 384 GEILIDGIDIRDISLDSLRKRI-GIVSQDPLLFSG-TIRENIALGRPDATDEEIEEA--L 439
Query: 84 RTVDALLKELGLLKCKNSVLNV----LSGGERKRVALA 117
+ +A L ++++ LSGG+R+R+A+A
Sbjct: 440 KLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 27.2 bits (61), Expect = 3.8
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGGE++RVA+A
Sbjct: 138 LSGGEKQRVAIA 149
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 27.2 bits (61), Expect = 3.9
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGG+R+R+ALA
Sbjct: 473 LSGGQRQRIALA 484
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 26.9 bits (60), Expect = 4.6
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 27 DGQILLNGLEVEKNLMVKVS---GFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHVER 82
G+IL++G ++ V++ G+V Q LTV E++ + +L D+
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE----RI 110
Query: 83 ARTVDALLKELGL--LKCKNSVLNVLSGGERKRVALA 117
+ D LL +GL + + + LSGG+++RV +A
Sbjct: 111 KKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 26.6 bits (59), Expect = 5.0
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ERA L ++G+ + ++ LSGG+++RVA+A
Sbjct: 130 IERAE---KYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 26.9 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 100 NSVLNVLSGGERKRVALAVQVSQDC 124
N VL LSGG+R+R+A+A + +D
Sbjct: 477 NGVL--LSGGQRQRIAIARALLRDS 499
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 26.8 bits (60), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
ERA L+ +GL ++ + LSGG ++RV LA
Sbjct: 139 ERAAEA---LELVGLEGWEHKYPDELSGGMQQRVGLA 172
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 26.7 bits (59), Expect = 5.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 59 LTVHEHMTLMARLKMDRNLHHV---ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVA 115
LTV E++ L +DR L + ER V+ + +GL + + LSGG ++RVA
Sbjct: 69 LTVRENIAL----AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVA 124
Query: 116 LA 117
+A
Sbjct: 125 IA 126
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 26.7 bits (59), Expect = 5.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 106 LSGGERKRVALAVQVSQ 122
LSGGER+RV LA ++Q
Sbjct: 140 LSGGERQRVLLARALAQ 156
>gnl|CDD|241255 cd01220, PH1_FARP1-like, FERM, RhoGEF and pleckstrin
domain-containing protein 1 and related proteins
Pleckstrin Homology (PH) domain, repeat 1. Members
here include FARP1 (also called Chondrocyte-derived
ezrin-like protein; PH domain-containing family C
member 2), FARP2 (also called FIR/FERM domain including
RhoGEF; FGD1-related Cdc42-GEF/FRG), and FARP6 (also
called Zinc finger FYVE domain-containing protein 24).
They are members of the Dbl family guanine nucleotide
exchange factors (GEFs) which are upstream positive
regulators of Rho GTPases. Little is known about FARP1
and FARP6, though FARP1 has increased expression in
differentiated chondrocytes. FARP2 is thought to
regulate neurite remodeling by mediating the signaling
pathways from membrane proteins to Rac. It is found in
brain, lung, and testis, as well as embryonic
hippocampal and cortical neurons. FARP1 and FARP2 are
composed of a N-terminal FERM domain, a proline-rich
(PR) domain, Dbl-homology (DH), and two C-terminal PH
domains. FARP6 is composed of Dbl-homology (DH), and
two C-terminal PH domains separated by a FYVE domain.
This hierarchy contains the first PH repeat. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 123
Score = 26.1 bits (58), Expect = 5.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 2 NPRYFLLFSGIHLLGQRVVHELSD--VDGQILLNGLEVEKN 40
R F LFS + + R V GQ+ L GL VE++
Sbjct: 37 QQRMFFLFSDVLIYTSRGPTSTLQFKVHGQLPLRGLMVEES 77
>gnl|CDD|132514 TIGR03474, incFII_RepA, incFII family plasmid replication
initiator RepA. Members of this protein are the
plasmid replication initiator RepA of incFII (plasmid
incompatibility group F-II) plasmids. R1 and R100 are
plasmids in this group. Immediately upstream of repA is
found tap, a leader peptide of about 24 amino acids,
often not assigned as a gene in annotated plasmid
sequences. Note that other, non-homologous plasmid
replication proteins share the gene symbol (repA) and
similar names (plasmid replication protein RepA).
Length = 275
Score = 26.9 bits (59), Expect = 5.2
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 39 KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKEL 93
+ LM K GF + D ++ H+ L + + + R R +DALL+ +
Sbjct: 24 RKLMAKAEGFTSRFDFSI-------HVAFARSLGLRHRMPPLLRRRAIDALLQGM 71
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 26.7 bits (60), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 99 KNSVLNVLSGGERKRVALAV 118
K L++LSGGE+ ALA+
Sbjct: 107 KVQRLSLLSGGEKALTALAL 126
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 26.8 bits (60), Expect = 5.4
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 28 GQILLNGLEV----EKNLMV--KVSGFVPQHDLTVDTLTVHEHMTLMARL-KMDRNLHHV 80
G + ++G ++ E L + G + QH + + TV E++ L + +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKA---- 116
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E + V LL+ +GL + LSGG+++RVA+A
Sbjct: 117 EIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA 153
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 26.4 bits (59), Expect = 5.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 57 DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVAL 116
LTV E++ A L + A L+ +GL + LS G+++RVAL
Sbjct: 86 PALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPLAHLPFGYLSAGQKRRVAL 138
Query: 117 A 117
A
Sbjct: 139 A 139
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 26.9 bits (60), Expect = 5.8
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGGER+R+ALA
Sbjct: 472 LSGGERQRLALA 483
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 26.5 bits (59), Expect = 6.0
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 28 GQILLNG---LEVEKNLMVKVS----GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
G+I LNG ++ EK + + G+V Q TV ++ M +
Sbjct: 53 GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL 112
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++ LL LSGGE++RVA+
Sbjct: 113 VALLGIEHLLDRYP---------GTLSGGEKQRVAIG 140
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 26.6 bits (59), Expect = 6.4
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTV--DTLTVHEHMTLMAR----LKMDRNLHHV 80
+GQI ++G +V + Q D+ + + + HM+L LKM +
Sbjct: 60 EGQIFIDGEDVTHRS-------IQQRDICMVFQSYALFPHMSLGENVGYGLKM-LGVPKE 111
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
ER + V L+ + L ++ ++ +SGG+++RVALA
Sbjct: 112 ERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA 148
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 26.6 bits (59), Expect = 6.4
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 27 DGQILLNGLEVEKN-LMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
G ++G +V K + GFV D LT E++ A L + ++
Sbjct: 59 AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL------YGLKGDE 112
Query: 85 ---TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++ L LG+ + + + S G R++VA+A
Sbjct: 113 LTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIA 148
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 26.3 bits (59), Expect = 6.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 106 LSGGERKRVALAVQVSQDC 124
LSGG+++R++LA V D
Sbjct: 128 LSGGQKQRISLARAVYSDA 146
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 26.4 bits (59), Expect = 6.7
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 26/103 (25%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTL----TVHEHMTLMAR----LKMDRNLH 78
G+I+L+G ++ VP + V+T+ + HMT+ L+M +
Sbjct: 68 SGRIMLDGQDITH---------VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118
Query: 79 HVERARTVDAL----LKELGLLKCKNSVLNVLSGGERKRVALA 117
R ++AL L+E K LSGG+++RVA+A
Sbjct: 119 AEITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIA 156
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 26.6 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
RA+ LL+ LGL + LSGG+++RV++A
Sbjct: 123 LRAQ---ELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 26.2 bits (58), Expect = 6.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 88 ALLKELGLLKCKNSVLNVLSGGERKRVALA 117
LL ++GL + + + LSGG+++RVA+A
Sbjct: 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIA 148
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 26.2 bits (58), Expect = 7.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+R +LK++GL + + LSGG+R+RV +A
Sbjct: 104 QRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 26.5 bits (59), Expect = 7.8
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGGER+R+ALA
Sbjct: 475 LSGGERRRLALA 486
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 26.0 bits (58), Expect = 7.9
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 105 VLSGGERKRVALA 117
VLSGGE++R+A A
Sbjct: 91 VLSGGEQQRLAFA 103
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 26.2 bits (58), Expect = 7.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 61 VHEHMTLMARLKMDRNLHH-------VERARTVDALLKELGLLKCKNSVLNVLSGGERKR 113
V + L L + NL + ER + + +++ LG+ + LSGGE++R
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQR 139
Query: 114 VALA 117
VA+
Sbjct: 140 VAIG 143
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 26.2 bits (58), Expect = 8.0
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 28 GQILLNGLEVE----KNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
GQILL+G ++ +L +V+ V Q + + T+ ++ + DR +ERA
Sbjct: 387 GQILLDGHDLADYTLASLRRQVA-LVSQDVVLFND-TIANNIAYGRTEQADR--AEIERA 442
Query: 84 RT-------VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
VD L L +N VL LSGG+R+R+A+A
Sbjct: 443 LAAAYAQDFVDKLPLGLDTPIGENGVL--LSGGQRQRLAIA 481
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 26.4 bits (58), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 106 LSGGERKRVALAVQVSQD 123
LSGG+R R++LA V +D
Sbjct: 160 LSGGQRARISLARAVYKD 177
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 26.3 bits (58), Expect = 8.1
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 67 LMARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALA 117
L L+++ +L +R + + L+ +GLL N ++L+ G+++RVALA
Sbjct: 110 LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA 161
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 26.2 bits (58), Expect = 8.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 103 LNVLSGGERKRVAL 116
+ LSGGE++R++L
Sbjct: 135 IAELSGGEKQRISL 148
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 26.4 bits (58), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 104 NVLSGGERKRVALA 117
N LSGGER+R+A+A
Sbjct: 470 NRLSGGERQRLAIA 483
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 26.2 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++ + H E V+ L+ +G+ K LSGG+++RVA+A
Sbjct: 109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIA 152
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional.
Length = 385
Score = 26.2 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 70 RLK-MDRNLHHVERARTVDALLKELGL 95
RLK D LH+ +R R + + +ELGL
Sbjct: 210 RLKPFDVKLHYTDRHRLPEEVEQELGL 236
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 26.2 bits (58), Expect = 9.4
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGG+++RVALA
Sbjct: 166 LSGGQKRRVALA 177
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 25.9 bits (58), Expect = 9.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 47 GFVPQHDLTVDTLTVHEH--MTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN 104
+VP+ LTV E+ + AR + +E + LKE +N
Sbjct: 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER-----RNQRAG 135
Query: 105 VLSGGERKRVALA 117
LSGGE++ +A+A
Sbjct: 136 TLSGGEQQMLAIA 148
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 25.9 bits (57), Expect = 10.0
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 106 LSGGERKRVALAVQVSQD 123
LSGGE++RV LA Q++++
Sbjct: 169 LSGGEKQRVVLARQLAKE 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.383
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,701,795
Number of extensions: 686378
Number of successful extensions: 871
Number of sequences better than 10.0: 1
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 227
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)