RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16753
(156 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 27 DGQILLNGLEVEKN-LMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
G + + G V + V+ ++P+ + E++ +A E
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEE 125
Query: 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V+ + GL + ++ S G +++ +A
Sbjct: 126 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 49.4 bits (119), Expect = 4e-08
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G+I+ NG+ + K F+P+ + ++V +++ +A L + + +
Sbjct: 63 KGEIIYNGVPITKVK--GKIFFLPEEIIVPRKISVEDYLKAVASLY---GVKVNKNE--I 115
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALA 117
L+ + +L K + LS G +RV LA
Sbjct: 116 MDALESVEVLDLKKKLGE-LSQGTIRRVQLA 145
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 43.5 bits (103), Expect = 8e-06
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
+G++ + V+ + PQ+ TV+E ++ + K++ N
Sbjct: 410 EGKVEWDL---------TVA-YKPQYIKAEYEGTVYELLSKIDSSKLNSN-------FYK 452
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
LLK LG++ + + LSGGE +RVA+A
Sbjct: 453 TELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484
Score = 41.5 bits (98), Expect = 4e-05
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 27 DGQILLNGLE------VEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
++ + L V + + + + K+ L V
Sbjct: 151 SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKV 203
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDC 124
+ + ++KEL L + L+ LSGGE +RVA+A + +
Sbjct: 204 DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKA 247
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 42.2 bits (100), Expect = 2e-05
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLLKCKNSVL 103
GFVPQ + +V + + LM R + + L L L
Sbjct: 69 GFVPQFFSSPFAYSVLD-IVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAKREF 126
Query: 104 NVLSGGERKRVALA 117
LSGG+R+ + +A
Sbjct: 127 TSLSGGQRQLILIA 140
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 40.4 bits (95), Expect = 9e-05
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 5/109 (4%)
Query: 9 FSGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLM 68
G + G L N +K PQ+ + +
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI-IKPQYVDNIPRAIKGPVQKVG 188
Query: 69 ARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
LK+ + V +K L L + LSGGE +R A+
Sbjct: 189 ELLKLRME----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG 233
Score = 37.7 bits (88), Expect = 7e-04
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 43 VKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSV 102
+ VS PQ TV + L + + ++K L + +
Sbjct: 413 LNVS-MKPQKIAPKFPGTVRQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE 464
Query: 103 LNVLSGGERKRVALA 117
+ LSGGE +RVA+
Sbjct: 465 VQHLSGGELQRVAIV 479
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 39.5 bits (93), Expect = 1e-04
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 28 GQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERAR 84
G I G +E + ++ Q V + L + ++
Sbjct: 54 GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY------LTLHQHDKTRTEL- 106
Query: 85 TVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++ + L L N LSGGE +RV LA
Sbjct: 107 -LNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 38.9 bits (91), Expect = 3e-04
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 47 GFVPQHDLTVDTLTVH-----EHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNS 101
+ + + VH E+ + + ++ L ++ D + + L + N
Sbjct: 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNK 134
Query: 102 VLNVLSGGERKRVALAVQVSQDC 124
N+LSGG +R+ +A + ++
Sbjct: 135 DANILSGGGLQRLLVAASLLREA 157
Score = 35.4 bits (82), Expect = 0.004
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
+ + K L L + S +N LSGGE +++ +A
Sbjct: 366 FEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA 398
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 37.6 bits (88), Expect = 8e-04
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 47 GFVPQ--HDLTVDTLTVHEHMTLMAR---LKMDRNLHHVERARTVDALLKELGLLKCKNS 101
GFV + + V + + + + + +++ R LLK +G+
Sbjct: 100 GFVSHSLLEKFQEGERVID-VVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQ 157
Query: 102 VLNVLSGGERKRVALA 117
+ LS GE++RV +A
Sbjct: 158 YIGYLSTGEKQRVMIA 173
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 37.3 bits (87), Expect = 0.001
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 74 DRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAV 118
+ + LLK LG++ + +N LSGGE +RVA+A
Sbjct: 370 KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAA 414
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 63 EHMT----LMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ K+ L + ++ ++K L L + LSGGE +RVA+A
Sbjct: 112 PQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIA 170
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 35.4 bits (82), Expect = 0.003
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 27 DGQILLNGLEVEK-NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G I +NG+EV K ++ S +P+ +TV++ + L LK ++R
Sbjct: 57 SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK------GLDRDL- 107
Query: 86 VDALLKELGLL-KCKNSVLNVLSGGERKRVALA 117
+LK L L + L LS G+ V +
Sbjct: 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.005
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 34/147 (23%)
Query: 4 RYFLLFSGIHLLG----QRVVHELSDVDGQILLNGLEVE-KNLMVKVSGFVPQHDLTVDT 58
LF + Q+ V E+ ++ + L++ ++ E + + ++ Q D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD----- 117
Query: 59 LTVHEHMTLMARLKMDRNL---HHVERARTVDALLKELGLLKCKNSVLNVLSG--GERKR 113
RL D + ++V R + L + L L+ +V ++ G G K
Sbjct: 118 -----------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKT 164
Query: 114 VALAVQVSQDCSRVVKITDSQPRG-KW 139
+A+ V K+ W
Sbjct: 165 W-VALDVCLS----YKVQCKMDFKIFW 186
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 34.1 bits (79), Expect = 0.010
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 28 GQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV 80
G++ ++ ++ + GFV Q + LT E++ L K +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 81 ERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALA 117
ER + LK L + N N LSGG+++RVA+A
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 34.1 bits (79), Expect = 0.011
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
RN+ VER R V + ++LG+ + LSGGER+RVALA
Sbjct: 96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 33.7 bits (78), Expect = 0.015
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E + VD LK G+ K+ + LS G++KRVA+A
Sbjct: 119 EIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 33.2 bits (77), Expect = 0.019
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 27 DGQILLNGLEVEK----------NLMVKVSGFVPQ-HDLTVDTLTVHEHMTL-MARLKMD 74
+G++ L G EV+ N + GFV Q H L + LT E++ + M ++
Sbjct: 58 EGKVFLEGKEVDYTNEKELSLLRNRKL---GFVFQFHYL-IPELTALENVIVPMLKMGKP 113
Query: 75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ E + LL ELGL + LSGGE++RVA+A
Sbjct: 114 KK----EAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 32.9 bits (76), Expect = 0.030
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 71 LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++M + ++ + V ++L + + LSGGE++RVALA
Sbjct: 97 MRMKK----IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 32.7 bits (74), Expect = 0.040
Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 11 GIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMAR 70
+E S + G+ + E +M + ++P+ +L V++ + M
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGEL-VESHSKMVAEVDMKE 865
Query: 71 LKMDRNLHHVERARTVDALLKELGLLK--CKNSVLNVLSGGERKRVALA 117
+ R ++ LGL +S + LSGG++ ++ LA
Sbjct: 866 ALASGQFRPLTRKE-IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLA 913
Score = 31.5 bits (71), Expect = 0.097
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 44 KVSGFVPQHDLTV-----DTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKC 98
+V GF Q + D H +++ + V + L E G
Sbjct: 485 QVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFES----GVGTKEAIKDKLIEFGFTDE 540
Query: 99 K-NSVLNVLSGGERKRVALA 117
++ LSGG + ++ALA
Sbjct: 541 MIAMPISALSGGWKMKLALA 560
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 31.8 bits (73), Expect = 0.080
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 71 LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
L + + ++A+L+ G+ + + LSGG+++R ALA
Sbjct: 105 LGN-GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 31.5 bits (72), Expect = 0.090
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 64 HMTL---MA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
++T +A L + E + V+ + K L + N LSG +++RVALA
Sbjct: 96 NLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 31.4 bits (72), Expect = 0.099
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 71 LKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
L+ + + E V LL+ + L N + LSGG+++RVALA
Sbjct: 112 LRE-KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 29.5 bits (67), Expect = 0.36
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 81 ERARTVDALLKELGL--LKCKNSVLNVLSGGERKRVALA 117
+ V ++ +GL K+ V LSGGE++RVA+A
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 28.6 bits (64), Expect = 0.62
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 103 LNVLSGGERKRVALAVQVSQDCSRVVKIT 131
L LSGGER + LA +++ +I+
Sbjct: 55 LTFLSGGERIALGLAFRLAMSLYLAGEIS 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.76
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 36/110 (32%)
Query: 67 LMARLKMDRNLHHVER------ARTVDALLKELGLLKCKNSVLNVLSGGERKRV-ALAVQ 119
L+ + L +V D +L L + L G + + ALA +
Sbjct: 60 LVGKF-----LGYVSSLVEPSKVGQFDQVLNLC--LTEFEN--CYLEGND---IHALAAK 107
Query: 120 VSQD-------CSRVVK------ITDSQPRGKWPISALFITTASSVEEEN 156
+ Q+ ++K I +P K SALF +V E N
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----RAVGEGN 153
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 28.4 bits (64), Expect = 0.82
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 81 ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E R V LL +GL +S + LSGG+++RVA+A
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 27.9 bits (63), Expect = 1.2
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 64 HMTL---MA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGGERKRVA 115
HMT+ +A L++ R E + V + K L + + +LN LSGG+++RVA
Sbjct: 89 HMTVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHI----DKLLNRYPWQLSGGQQQRVA 143
Query: 116 LA 117
+A
Sbjct: 144 IA 145
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGGE++RVA+A
Sbjct: 191 LSGGEKQRVAIA 202
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGGER+R+A+A
Sbjct: 156 LSGGERQRIAIA 167
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 27.2 bits (61), Expect = 2.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 64 HMTL---MA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGGERKRVA 115
HMT+ +A LK+ + E + V + L + +LN LSGG+R+RVA
Sbjct: 97 HMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQI----EELLNRYPAQLSGGQRQRVA 151
Query: 116 LA 117
+A
Sbjct: 152 VA 153
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 27.3 bits (61), Expect = 2.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 99 KNSVLNVLSGGERKRVALA 117
++ L++LSGGE+ V LA
Sbjct: 213 RDQKLSLLSGGEKALVGLA 231
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 27.1 bits (61), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 79 HVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
VE+A +L+ L L + LSGG+ K V +
Sbjct: 130 MVEKA---FKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 27.2 bits (61), Expect = 2.5
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 64 HMTL---MA-RLKMDRNLHHVERARTVDALLKELGLLKCKNSVLN----VLSGGERKRVA 115
HMT+ +A LK+ R + E + V + + LGL +LN LSGG+R+RVA
Sbjct: 95 HMTVYDNIAFPLKL-RKVPRQEIDQRVREVAELLGL----TELLNRKPRELSGGQRQRVA 149
Query: 116 LA 117
L
Sbjct: 150 LG 151
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 27.2 bits (61), Expect = 2.6
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
Query: 64 HMTL---MA-RLKMDRNLHHVERARTVDALLKELG---LLKCKNSVLNVLSGGERKRVAL 116
HMT+ +A L+ R + E + V + ++L LL K + L SGG+++RVAL
Sbjct: 89 HMTVFENIAFPLRA-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQL---SGGQQQRVAL 144
Query: 117 A 117
A
Sbjct: 145 A 145
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 26.5 bits (59), Expect = 3.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 99 KNSVLNVLSGGERKRVALA 117
+ +SGGE+ ALA
Sbjct: 58 DVKRIEAMSGGEKALTALA 76
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 26.4 bits (59), Expect = 4.6
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 59 LTVHEHMTL--MARLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVA 115
+TV E++ + L + ++ ERA L ++G+ + + LSGG+++RV+
Sbjct: 108 MTVLENVMEAPIQVLGLSKH-DARERAL---KYLAKVGIDERAQGKYPVHLSGGQQQRVS 163
Query: 116 LA 117
+A
Sbjct: 164 IA 165
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 26.2 bits (57), Expect = 5.2
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 45 VSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK--NSV 102
+ D+ TL HEH+ + + + H + E+ ++
Sbjct: 7 GKDSIESKDIGF-TLI-HEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTI 64
Query: 103 LNVLSGGERKRVALAVQVSQD 123
++ G + + +V +
Sbjct: 65 VDPTVMGLGRDIRFMEKVVKA 85
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 25.9 bits (58), Expect = 5.5
Identities = 8/12 (66%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
LSGG+R+R+A+A
Sbjct: 146 LSGGQRQRIAIA 157
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 26.0 bits (58), Expect = 6.2
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 27 DGQILLNGLEVEK-----NLMVKVSGFVPQHDLTVDTLTVHEHMTL--MARLKMDRNLHH 79
+G+I+++G+ ++ N + + G V Q +TV ++TL M K R
Sbjct: 78 EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE-KA 136
Query: 80 VERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+A LL ++GL ++ + LSGG+ +RVA+A
Sbjct: 137 EAKAM---ELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 25.7 bits (57), Expect = 7.1
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 78 HHVERARTVDALLKELGL 95
H+E A+ + ++ G
Sbjct: 233 RHIENAKIFEKKARDFGF 250
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 25.5 bits (57), Expect = 7.3
Identities = 7/12 (58%), Positives = 12/12 (100%)
Query: 106 LSGGERKRVALA 117
+SGG+R+R+A+A
Sbjct: 140 ISGGQRQRLAIA 151
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J*
1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I*
3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Length = 156
Score = 25.2 bits (56), Expect = 8.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 76 NLHHVERA--RTVD-ALLKELGLLKCKNSVLNVLSGGERKRVALAVQVS 121
L ++ T D L+ L++ KN + +L+ GE R A+ V V
Sbjct: 76 KLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISR-AVTVHVD 123
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 25.2 bits (56), Expect = 9.7
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 106 LSGGERKRVAL 116
LSGG+R+RVA+
Sbjct: 134 LSGGQRQRVAI 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.383
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,295,126
Number of extensions: 131013
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 66
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)