RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16753
(156 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 50.2 bits (120), Expect = 9e-09
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 27 DGQILLNGLEV-EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
+G+I +V + V Q +TV+E++ ++ + E +
Sbjct: 60 EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKR 116
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V + L + + N LSGG+R+RVA+A
Sbjct: 117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 148
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 45.3 bits (107), Expect = 6e-07
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
VDGQ L E E + G + QH + + TV ++ L L N E R
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRR 120
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V LL +GL +S + LSGG+++RVA+A
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 44.4 bits (105), Expect = 9e-07
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 27 DGQILLNGLEVEK-------NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHH 79
+G++ ++ ++ + GFV Q + LT E++ L K +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 80 VERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQD 123
ER + LK L + N N LSGG+++RVA+A ++ +
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 43.4 bits (102), Expect = 2e-06
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 28 GQILLNGLEVEKNL--MVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G + + G V + + K+ ++P+ + E++ +A E
Sbjct: 57 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEM 113
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V+ + GL + ++ S G +++ +A
Sbjct: 114 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 145
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 41.0 bits (96), Expect = 2e-05
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 10 SGIHLLGQRVVHELSDVDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMA 69
G ++ + ++ + D DGQ+ + + L ++ V QH +TV E+ +M
Sbjct: 56 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL-TMVFQHFNLWSHMTVLEN--VME 112
Query: 70 RLKMDRNLHHVERARTVDALLKELGLL-KCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
L + L ++G+ + + LSGG+++RV++A ++ + ++
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 40.3 bits (94), Expect = 3e-05
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 27 DGQILLNGLEVEKNLMVKV----SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHV-- 80
+G++ ++ ++ Q + +TV E++ + + L+ +
Sbjct: 58 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY 117
Query: 81 --------ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQD 123
E +L+ L L + LSGG+ K V + + +
Sbjct: 118 KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN 168
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 39.5 bits (92), Expect = 6e-05
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 17/104 (16%)
Query: 31 LLNGLEVEKNLMVKVSGFVPQHD--------LTVDTLTVHEHMTLMARLKMDRNLHHV-- 80
++ GLE + + + D V + L + + N+
Sbjct: 48 MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107
Query: 81 -------ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
E + V + + LGL + N LSGG+R+RVAL
Sbjct: 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 39.1 bits (91), Expect = 6e-05
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G+I+ NG+ + K + F+P+ + ++V +++ +A L + +
Sbjct: 55 KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-----VNKNEI 107
Query: 87 DALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS 125
L+ + +L K + LS G +RV LA + +
Sbjct: 108 MDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAE 145
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 39.1 bits (91), Expect = 7e-05
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 18 RVVHELSDVDGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMD 74
+ ++ G I G +E + ++ Q V ++TL K
Sbjct: 43 ARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100
Query: 75 RNLHHVERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
R ++ + L L N LSGGE +RV LA
Sbjct: 101 ------TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 38.0 bits (88), Expect = 2e-04
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 41 LMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCK- 99
+ VP+ LTV+E++ + A + D+ R ++ + LK +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERL 133
Query: 100 NSVLNVLSGGERKRVALA 117
+ LSGGE++ +A+
Sbjct: 134 KQLGGTLSGGEQQMLAIG 151
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 36.8 bits (85), Expect = 4e-04
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 31 LLNGLEVEKNLMVKVSGFVPQHDLTVDTLTV---HEHMTLMARLKMDRNLHHV------- 80
++ GLE + + + +D V + L L + N+
Sbjct: 45 MIAGLETITSGDLFIGE-KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 103
Query: 81 --ERARTVDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
+ V+ + + L L + LSGG+R+RVA+
Sbjct: 104 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 142
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 34.9 bits (80), Expect = 0.002
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
+G I +G +V F Q + T+ E++ R V+ +
Sbjct: 90 EGIIKHSG---------RV-SFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQ 138
Query: 87 DALLK-ELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
+ K LSGG+R R++LA V +D +
Sbjct: 139 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 34.4 bits (79), Expect = 0.003
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 27 DGQILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERA 83
GQIL++G ++ + G V Q ++ TV E++ L D + +
Sbjct: 72 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTATDEEVVEAAKM 130
Query: 84 RTVDALLKEL--GLLKCKNSVLNVLSGGERKRVALA 117
+ L G LSGG+++R+++A
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 34.3 bits (78), Expect = 0.003
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 47 GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTVDALLKELGLLKCKNSVLNVL 106
FV Q+ + V +++ + ++ + V ++L + + L
Sbjct: 75 AFVYQNYSLFPHMNVKKNLE------FGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128
Query: 107 SGGERKRVAL 116
SGGE++RVAL
Sbjct: 129 SGGEQQRVAL 138
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 33.4 bits (76), Expect = 0.005
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 27 DGQILLNGLEVEKNLMVKVS-GFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
G++ LNG ++ + GFVPQ L+V+ ++ RN+ VER R
Sbjct: 52 RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG-----LRNVERVERDRR 106
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALA 117
V + ++LG+ + LSGGER+RVALA
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALA 138
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 33.1 bits (75), Expect = 0.008
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 26 VDGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
D +++ + ++ + G V Q LT E++ + E +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKR 120
Query: 86 VDALLKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCSRVV 128
V+ + K L + N LSG +++RVALA + +D S ++
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL 163
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 32.2 bits (73), Expect = 0.018
Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 29 QILLNGLEVEK---NLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
Q+L++G ++ N + + G V Q ++ ++ + + +++ ++ + A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 86 VDAL-LKELGLLKCKNSVLNVLSGGERKRVALAVQVSQDCS 125
D + G LSGG+R+R+A+A + +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 31.4 bits (71), Expect = 0.033
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 29 QILLNGLEV---EKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
Q+LL+G + E + + V Q ++ E++ K A
Sbjct: 70 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTME-EITAAAVK 127
Query: 86 VDALLKELGLLKCKNSVLNV----LSGGERKRVALAVQVSQDCS 125
A GL + ++ ++ LSGG+R+ VALA + +
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPC 171
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 29.8 bits (67), Expect = 0.10
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 29 QILLNGLEVEKNLMVKV---SGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERART 85
IL++G ++ + + + V Q+ + + + R
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 86 VDALLKEL--GLLKCKNSVLNVLSGGERKRVALA 117
+ ++ GL +LSGG+R+R+A+A
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.9 bits (62), Expect = 0.51
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 27 DGQILLNGLEVEKNLMVKVSGFVPQHDLTVDTLTVHEHMTLMARLKMDRNLHHVERARTV 86
G+I ++G ++ + + V + +MA + + +E T
Sbjct: 56 AGEITIDGQPIDN---------ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106
Query: 87 DALLKELGLLKCKNSVLNV--------------LSGGERKRVALA 117
+ L + L L ++ V N+ +SGG+R+R+A+A
Sbjct: 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151
>d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1
(RanGAP1), C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 157
Score = 24.4 bits (53), Expect = 6.4
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 84 RTVDALLKELGLLKC--KNSVLNVLSGGERKRVALAVQVSQDC-----SRVVKITDSQPR 136
+ LL +GLLK K + L G +AL V QD + ++ ++P
Sbjct: 81 TFLTRLLVHMGLLKSEDKVKAIANLYG---PLMALNHMVQQDYFPKALAPLLLAFVTKPN 137
Query: 137 GKWP 140
Sbjct: 138 SALE 141
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Yeast (Candida
tropicalis) [TaxId: 5482]}
Length = 124
Score = 23.9 bits (51), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 53 DLTVDTLTVHEHMTLMARLKMDRNLHHV 80
D VD + V E + + RL DRN H+
Sbjct: 11 DYQVD-VPVSEDLAALYRLSGDRNPLHI 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.383
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,580
Number of extensions: 21757
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 23
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)