BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16754
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KD2|A Chain A, Nmr Structure Of Faim-Ctd
Length = 94
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 60/77 (77%)
Query: 45 SQSKANCTWIVTVEDETYRVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTIGDTPAYI 104
++SK TW++ ++ E RVVLE+ T+D+W NG +++ GEFV++GTETHF++G+ YI
Sbjct: 7 NRSKTTSTWVLRLDGEDLRVVLEKDTMDVWCNGQKMETAGEFVDDGTETHFSVGNHDCYI 66
Query: 105 KAVSSCNKKEGLLYSLI 121
KAVSS +KEG++++LI
Sbjct: 67 KAVSSGKRKEGIIHTLI 83
>pdb|2KW1|A Chain A, Solution Structure Of Ctd
Length = 89
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 59/76 (77%)
Query: 46 QSKANCTWIVTVEDETYRVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTIGDTPAYIK 105
+SK TW++ ++ E +R+VLE+ +D+W NG +++ GEFV++GTETHF+IG+ YIK
Sbjct: 3 RSKTTNTWVLHMDGENFRIVLEKDAMDVWCNGKKLETAGEFVDDGTETHFSIGNHDCYIK 62
Query: 106 AVSSCNKKEGLLYSLI 121
AVSS +KEG++++LI
Sbjct: 63 AVSSGKRKEGIIHTLI 78
>pdb|3MX7|A Chain A, Crystal Structure Analysis Of Human Faim-Ntd
Length = 90
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 1 MFRLVGEESFQLDS-KVPCLIKIEPSGPFGYAYSITVDGKTLEKF 44
MF+LVG+E+F + + K I I+ F Y Y++ ++GK+L+K+
Sbjct: 45 MFKLVGKETFYVGAAKTKATINIDAISGFAYEYTLEINGKSLKKY 89
>pdb|2ON7|A Chain A, Structure Of Nagst-1
pdb|2ON7|B Chain B, Structure Of Nagst-1
pdb|2ON7|C Chain C, Structure Of Nagst-1
pdb|2ON7|D Chain D, Structure Of Nagst-1
Length = 206
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 21 KIEPSGPFGYAYSITVDGKTLEKFSQSKANCTWI 54
K++P PFG + VDGK L +QS A C ++
Sbjct: 41 KVKPDLPFGQVPVLEVDGKQL---AQSLAICRYL 71
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
Length = 344
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 83 TGEFVENGTETHFTIGDTPAYIKAV 107
TGE ++ G E IG TPA IKA+
Sbjct: 38 TGEILKVGLEAKNMIGKTPATIKAI 62
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
Length = 344
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 83 TGEFVENGTETHFTIGDTPAYIKAV 107
TGE ++ G E IG TPA IKA+
Sbjct: 38 TGEILKVGLEAKNXIGKTPATIKAI 62
>pdb|1YLP|A Chain A, Atomic Resolution Structure Of Ctx-M-27 Beta-Lactamase
Length = 263
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 3 RLVGEESFQLDSKVPCLIKIEPSGPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETY 62
R +G+E+F+LD P L P P D T +Q+ T + ET
Sbjct: 128 RAIGDETFRLDRTEPTLNTAIPGDPR--------DTTTPRAMAQTLRQLT-LGHALGET- 177
Query: 63 RVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTIGD 99
+R L W+ G+ + G T +T+GD
Sbjct: 178 ----QRAQLVTWLKGNTTGAAS--IRAGLPTSWTVGD 208
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 51 CTWIVTVEDETYRVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTIGDTPAYIKAVSSC 110
T I + Y V+E+GT+D +VN ++V+ +G G A + A S C
Sbjct: 39 ATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATVVATSDC 98
>pdb|1YLT|A Chain A, Atomic Resolution Structure Of Ctx-M-14 Beta-Lactamase
pdb|1YLZ|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
pdb|1YLZ|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
Length = 263
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 3 RLVGEESFQLDSKVPCLIKIEPSGPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETY 62
R +G+E+F+LD P L P P D T +Q+ T + +
Sbjct: 128 RAIGDETFRLDRTEPTLNTAIPGDPR--------DTTTPRAMAQTLRQLTLGHALGET-- 177
Query: 63 RVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTIGD 99
+R L W+ G+ + G T +T+GD
Sbjct: 178 ----QRAQLVTWLKGNTTGAAS--IRAGLPTSWTVGD 208
>pdb|3TUR|A Chain A, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 Complexed With A Peptidoglycan Fragment
pdb|3TUR|B Chain B, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 Complexed With A Peptidoglycan Fragment
pdb|3U1Q|A Chain A, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 With 2- Mercaptoethanol
pdb|3U1Q|B Chain B, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 With 2- Mercaptoethanol
Length = 287
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 71 LDIWVNGDRVDVT-GEFVENGTETHFTIGD 99
+D+ VN VD+ G F E+ +THFTIGD
Sbjct: 101 VDVAVNTYGVDLGEGMFGEDNVQTHFTIGD 130
>pdb|3TX4|A Chain A, Crystal Structure Of Mutant (C354a) M. Tuberculosis
Ld-Transpeptidase Type 2
pdb|3TX4|B Chain B, Crystal Structure Of Mutant (C354a) M. Tuberculosis
Ld-Transpeptidase Type 2
Length = 287
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 71 LDIWVNGDRVDVT-GEFVENGTETHFTIGD 99
+D+ VN VD+ G F E+ +THFTIGD
Sbjct: 101 VDVAVNTYGVDLGEGMFGEDNVQTHFTIGD 130
>pdb|3U1P|A Chain A, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 With Modified Catalytic Cysteine (C354)
pdb|3U1P|B Chain B, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 With Modified Catalytic Cysteine (C354)
pdb|3VAE|A Chain A, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 With Modified Catalytic Cysteine (C354)
pdb|3VAE|B Chain B, Crystal Structure Of M. Tuberculosis Ld-Transpeptidase
Type 2 With Modified Catalytic Cysteine (C354)
Length = 287
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 71 LDIWVNGDRVDVT-GEFVENGTETHFTIGD 99
+D+ VN VD+ G F E+ +THFTIGD
Sbjct: 101 VDVAVNTYGVDLGEGMFGEDNVQTHFTIGD 130
>pdb|4GSQ|A Chain A, Structural Basis For The Inhibition Of Mycobacterium
Tuberculosis L,d- Transpeptidase By Meropenem, A Drug
Effective Against Extensively Drug-resistant Strains
pdb|4GSR|A Chain A, Structural Basis For The Inhibition Of Mycobacterium
Tuberculosis L,d- Transpeptidase By Meropenem, A Drug
Effective Against Extensively Drug-resistant Strains
pdb|4GSU|A Chain A, Structural Basis For The Inhibition Of Mycobacterium
Tuberculosis L,d- Transpeptidase By Meropenem, A Drug
Effective Against Extensively Drug-resistant Strains
pdb|4GSU|B Chain B, Structural Basis For The Inhibition Of Mycobacterium
Tuberculosis L,d- Transpeptidase By Meropenem, A Drug
Effective Against Extensively Drug-resistant Strains
Length = 287
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 71 LDIWVNGDRVDVT-GEFVENGTETHFTIGD 99
+D+ VN VD+ G F E+ +THFTIGD
Sbjct: 93 VDVAVNTYGVDLGEGMFGEDNVQTHFTIGD 122
>pdb|4HUC|A Chain A, Crystal Structure Of Ldtmt2, A L,D-Transpeptidase From
Mycobacterium Tuberculosis: Domain B And C
pdb|4HUC|B Chain B, Crystal Structure Of Ldtmt2, A L,D-Transpeptidase From
Mycobacterium Tuberculosis: Domain B And C
Length = 262
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 70 TLDIWVNGDRVDVT-GEFVENGTETHFTIGD 99
+D+ VN VD+ G F E+ +THFTIGD
Sbjct: 75 AVDVAVNTYGVDLGEGMFGEDNVQTHFTIGD 105
>pdb|2MTA|H Chain H, Crystal Structure Of A Ternary Electron Transfer Complex
Between Methylamine Dehydrogenase, Amicyanin And A
C-Type Cytochrome
Length = 373
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 26 GPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETYRVVLE 67
G + + S+T DGKTL + S A +V +E + ++ +L+
Sbjct: 123 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 164
>pdb|2BBK|H Chain H, Crystal Structure Of The Quinoprotein Methylamine
Dehydrogenase From Paracoccus Denitrificans At 1.75
Angstroms
pdb|2BBK|J Chain J, Crystal Structure Of The Quinoprotein Methylamine
Dehydrogenase From Paracoccus Denitrificans At 1.75
Angstroms
Length = 355
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 26 GPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETYRVVLE 67
G + + S+T DGKTL + S A +V +E + ++ +L+
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 146
>pdb|1MG2|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG2|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|A Chain A, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|E Chain E, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|I Chain I, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
pdb|1MG3|M Chain M, Mutation Of Alpha Phe55 Of Methylamine Dehydrogenase
Alters The Reorganization Energy And Electronic Coupling
For Its Electron Transfer Reaction With Amicyanin
Length = 390
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 26 GPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETYRVVLE 67
G + + S+T DGKTL + S A +V +E + ++ +L+
Sbjct: 140 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 181
>pdb|3PXW|D Chain D, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3PXW|F Chain F, Crystal Structure Of Ferrous No Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3SLE|D Chain D, Crystal Structure Of The P107c-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SLE|F Chain F, Crystal Structure Of The P107c-MaugPRE-Methylamine
Dehydrogenase Complex
Length = 385
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 26 GPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETYRVVLE 67
G + + S+T DGKTL + S A +V +E + ++ +L+
Sbjct: 135 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 176
>pdb|2GC4|A Chain A, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|E Chain E, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|I Chain I, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC4|M Chain M, Structural Comparison Of The Oxidized Ternary Electron
Transfer Complex Of Methylamine Dehydrogenase, Amicyanin
And Cytochrome C551i From Paracoccus Denitrificans With
The Substrate-Reduced, Copper Free Complex At 1.9 A
Resolution.
pdb|2GC7|A Chain A, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|E Chain E, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|I Chain I, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2GC7|M Chain M, Substrate Reduced, Copper Free Complex Of Methylamine
Dehydrogenase, Amicyanin And Cytochrome C551i From
Paracoccus Denitrificans.
pdb|2J55|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J55|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase O-Quinone In Complex With Amicyanin.
pdb|2J56|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J56|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Semiquinone In Complex With Amicyanin.
pdb|2J57|G Chain G, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|H Chain H, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|I Chain I, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|2J57|J Chain J, X-Ray Reduced Paraccocus Denitrificans Methylamine
Dehydrogenase N-Quinol In Complex With Amicyanin.
pdb|3L4M|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex.
pdb|3L4M|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex.
pdb|3L4O|D Chain D, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3L4O|F Chain F, Crystal Structure Of The MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3ORV|D Chain D, Crystal Structure Of The Y294h-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3ORV|F Chain F, Crystal Structure Of The Y294h-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3PXS|D Chain D, Crystal Structure Of Diferrous Maug In Complex With
Pre-Methylamine Dehydrogenase:
pdb|3PXS|F Chain F, Crystal Structure Of Diferrous Maug In Complex With
Pre-Methylamine Dehydrogenase:
pdb|3PXT|D Chain D, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3PXT|F Chain F, Crystal Structure Of Ferrous Co Adduct Of Maug In Complex
With Pre- Methylamine Dehydrogenase
pdb|3RLM|D Chain D, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3RLM|F Chain F, Structure Of The W199f MaugPRE-Methylamine Dehydrogenase
Complex After Treatment With Hydrogen Peroxide
pdb|3RMZ|D Chain D, Crystal Structure Of The W199f-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RMZ|F Chain F, Crystal Structure Of The W199f-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN0|D Chain D, Crystal Structure Of The W199k-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN0|F Chain F, Crystal Structure Of The W199k-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN1|D Chain D, Crystal Structure Of The W199e-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3RN1|F Chain F, Crystal Structure Of The W199e-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SJL|D Chain D, Crystal Structure Of The P107s-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SJL|F Chain F, Crystal Structure Of The P107s-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SVW|D Chain D, Crystal Structure Of The P107v-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SVW|F Chain F, Crystal Structure Of The P107v-MaugPRE-Methylamine
Dehydrogenase Complex
pdb|3SWS|D Chain D, Crystal Structure Of The Quinone Form Of Methylamine
Dehydrogenase In Complex With The Diferric Form Of Maug
pdb|3SWS|F Chain F, Crystal Structure Of The Quinone Form Of Methylamine
Dehydrogenase In Complex With The Diferric Form Of Maug
pdb|3SXT|D Chain D, Crystal Structure Of The Quinol Form Of Methylamine
Dehydrogenase In Complex With The Diferrous Form Of Maug
pdb|3SXT|F Chain F, Crystal Structure Of The Quinol Form Of Methylamine
Dehydrogenase In Complex With The Diferrous Form Of Maug
Length = 386
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 26 GPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETYRVVLE 67
G + + S+T DGKTL + S A +V +E + ++ +L+
Sbjct: 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 177
>pdb|3MML|B Chain B, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
pdb|3MML|D Chain D, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
pdb|3MML|F Chain F, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
pdb|3MML|H Chain H, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
Length = 228
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 77 GDRVDVTGEFVENGTETHFTI---GDTPAYIKA--------VSSCNKKEGLLY 118
GDRVDVT + V +G + H G TPA + A V C G Y
Sbjct: 100 GDRVDVTIDVVYDGADLHEVASLTGXTPAQVIAAHTGTPWRVGFCGFAPGFAY 152
>pdb|3U0I|A Chain A, Crystal Structure Of A Probable Fad-Binding, Putative
Uncharacterized Protein From Brucella Melitensis
pdb|3U5W|A Chain A, Crystal Structure Of A Probable Fad-Binding, Putative
Uncharacterized Protein From Brucella Melitensis, Apo
Form
Length = 148
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 5 VGEESFQLDSKVPCLIKIEPSGPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDET-YR 63
VG + +D + P ++ + G YS T DG+ ++ A C +E +T +R
Sbjct: 24 VGRLGYVVDDR-PIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWR 82
Query: 64 VVLERG 69
VL +G
Sbjct: 83 TVLVQG 88
>pdb|4HU2|A Chain A, Crystal Structure Of Ldtmt2, A L,D-Transpeptidase From
Mycobacterium Tuberculosis: Domain A And B
Length = 198
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 71 LDIWVNGDRVDVT-GEFVENGTETHFTIG 98
+D+ VN VD+ G F E+ +THFTIG
Sbjct: 170 VDVAVNTYGVDLGEGMFGEDNVQTHFTIG 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,985,245
Number of Sequences: 62578
Number of extensions: 160891
Number of successful extensions: 577
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 26
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)