RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16754
         (127 letters)



>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
           factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
          Length = 165

 Score = 28.2 bits (63), Expect = 0.22
 Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 7/72 (9%)

Query: 41  LEKFSQSKANCTWIVTVEDETYRVVLERGTLDIW----VNGDRVDVT-GEFVENGTETHF 95
           +++       C  I++  D+ Y +  ++  L  +        R  +   E  E       
Sbjct: 91  MKQVKAQDGICFVIISAFDQVYFLEADK--LFYFWDRKEKNGRKSIRKDELEETAYPISL 148

Query: 96  TIGDTPAYIKAV 107
                  YI  +
Sbjct: 149 GYAPRIDYISII 160


>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 242

 Score = 24.2 bits (52), Expect = 5.2
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 55  VTVEDETYRVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTIGDT 100
           +   D T + +   G +D+ VN   + +   F+E   E        
Sbjct: 59  LGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSV 104


>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 418

 Score = 24.3 bits (52), Expect = 5.3
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 7   EESFQLDSKVPCLIKIEPSGPF 28
           ++  +L   VP L ++ P+G  
Sbjct: 321 DDFSELSDAVPLLARVYPNGHA 342


>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 244

 Score = 23.8 bits (51), Expect = 7.1
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 55  VTVEDETYRVVLERGTLDIWVNGDRVDVTGEFVENGTETHFTI 97
           +   + T R +   G +D+ VN   V +   F+E   E     
Sbjct: 61  LGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRS 103


>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
           [TaxId: 554]}
          Length = 271

 Score = 23.6 bits (50), Expect = 8.3
 Identities = 10/60 (16%), Positives = 16/60 (26%)

Query: 17  PCLIKIEPSGPFGYAYSITVDGKTLEKFSQSKANCTWIVTVEDETYRVVLERGTLDIWVN 76
             LI          ++   + G T  +           +      Y+   E G L I  N
Sbjct: 186 KMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGDLLIMDN 245


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,604
Number of extensions: 20200
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 14
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)