BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16758
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W422|JOSL_DROME Josephin-like protein OS=Drosophila melanogaster GN=CG3781 PE=2
SV=3
Length = 221
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINV 70
IYHE+Q + LC LHALNNLFQ P FSK++LD+ C L+P+ WLNPHRS +G GNYD+NV
Sbjct: 39 IYHERQTRHLCGLHALNNLFQGPDMFSKSELDDYCTTLTPRNWLNPHRSWIGWGNYDVNV 98
Query: 71 IMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN 130
IM ALQ++ E+ WFDRR+DP C++ + G+ILN+P+Q +G Y+P P RHWL +R
Sbjct: 99 IMYALQQRNCEAVWFDRRRDPHCLNLSVIFGFILNVPAQMSLGYYIPLPFHMRHWLALRR 158
Query: 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVV 172
+NG YYNLDSKL P+ +G E+ +E+L L +D ELF+V
Sbjct: 159 LNGSYYNLDSKLREPKCLGTEQQFLEFLATQLQ-MDHELFLV 199
>sp|Q8TAC2|JOS2_HUMAN Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1
Length = 188
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 123/190 (64%), Gaps = 7/190 (3%)
Query: 1 MDNSPEAQE---IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH 57
M +P AQ +YHE+Q ELCA+HALNN+ Q + FS+ DEIC L+P + LNPH
Sbjct: 1 MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQ-QLFSQEAADEICKRLAPDSRLNPH 59
Query: 58 RSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVP 117
RS+LG GNYD+NVIM ALQ G + W+DRR+ + +V G ILN+PS +G +
Sbjct: 60 RSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLG-LLS 118
Query: 118 TPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLS-DIDKELFVVTR-I 175
P++RRHW+ +R ++G+YYNLDSKL PE +G E+ + +L L+ + + L VVT+ +
Sbjct: 119 LPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLVVTKEV 178
Query: 176 ENSKSYFKEN 185
E S+ + +
Sbjct: 179 EEKGSWLRTD 188
>sp|Q5R739|JOS1_PONAB Josephin-1 OS=Pongo abelii GN=JOSD1 PE=2 SV=1
Length = 202
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
IYHEKQ +ELCALHALNN+FQ+ F++ L EI LSP T + PH+ S+LG GNYD+N
Sbjct: 26 IYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85
Query: 70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
VIM ALQ KG+E+ W+D+R+D I V G+I+N+PS G + P+KR+HW+ VR
Sbjct: 86 VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144
Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
+ G YYNLDSKL PE IG E +L ++L+ L + EL +V +E +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>sp|Q15040|JOS1_HUMAN Josephin-1 OS=Homo sapiens GN=JOSD1 PE=1 SV=1
Length = 202
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
IYHEKQ +ELCALHALNN+FQ+ F++ L EI LSP T + PH+ S+LG GNYD+N
Sbjct: 26 IYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85
Query: 70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
VIM ALQ KG+E+ W+D+R+D I V G+I+N+PS G + P+KR+HW+ VR
Sbjct: 86 VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144
Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
+ G YYNLDSKL PE IG E +L ++L+ L + EL +V +E +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>sp|Q9CR30|JOS2_MOUSE Josephin-2 OS=Mus musculus GN=Josd2 PE=2 SV=1
Length = 188
Score = 169 bits (428), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 122/187 (65%), Gaps = 7/187 (3%)
Query: 1 MDNSPEAQEI---IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH 57
M +PEA+ +YHE+Q ELCA+HALNN+ Q + FS+ DEIC L+P + LNPH
Sbjct: 1 MSQAPEARPSPPSVYHERQRLELCAVHALNNVLQE-QLFSQEAADEICKRLAPDSRLNPH 59
Query: 58 RSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVP 117
RS+LG GNYD+NVIM ALQ G + W+DRR+ + +V G ILN+PS +G +
Sbjct: 60 RSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLG-LLS 118
Query: 118 TPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLS-DIDKELFVVTR-I 175
P++RRHW+ +R ++GIYYNLDSKL PE +G E+ + +L L+ + + L VVT+ +
Sbjct: 119 LPLRRRHWVALRQVDGIYYNLDSKLRAPEALGDEDGVRTFLAAALAQGLCEVLLVVTKEV 178
Query: 176 ENSKSYF 182
E + +
Sbjct: 179 EEAGCWL 185
>sp|Q9DBJ6|JOS1_MOUSE Josephin-1 OS=Mus musculus GN=Josd1 PE=2 SV=1
Length = 202
Score = 169 bits (428), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH-RSILGLGNYDIN 69
IYHEKQ +ELCALHALNN+FQ+ F++ L EI LSP T + PH +S+LG GNYD+N
Sbjct: 26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85
Query: 70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
VIM ALQ KG+E+ W+D+R+D I V G+I+N+PS G + P+KR+HW+ VR
Sbjct: 86 VIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144
Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
+ G YYNLDSKL PE IG E +L ++L+ L + EL +V +E +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLVVPEEVEAHQSW 198
>sp|Q5BJY4|JOS1_RAT Josephin-1 OS=Rattus norvegicus GN=Josd1 PE=2 SV=1
Length = 202
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
IYHEKQ +ELCALHALNN+FQ+ F++ L EI LSP T + PH+ S+LG GNYD+N
Sbjct: 26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTVVTPHKKSMLGNGNYDVN 85
Query: 70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
VIM ALQ KG+E+ W+D+R+D I V G+I+N+PS G + P+KR+HW+ VR
Sbjct: 86 VIMAALQTKGYEAVWWDKRRDVGVIALANVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144
Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
+ G YYNLDSKL PE IG E +L ++L+ L + EL +V +E +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLVVPEEVEAHQSW 198
>sp|Q5EAE5|JOS1_BOVIN Josephin-1 OS=Bos taurus GN=JOSD1 PE=2 SV=1
Length = 202
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 117/174 (67%), Gaps = 4/174 (2%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHR-SILGLGNYDIN 69
IYHEKQ +ELCALHALNN+FQ+ F++ L EI LSP T + PH+ S+LG GNYD+N
Sbjct: 26 IYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVTPHKKSMLGNGNYDVN 85
Query: 70 VIMTALQKKGFESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR 129
VIM ALQ KG+E+ W+D+R+D I V G+I+N+PS G + P+KR+HW+ VR
Sbjct: 86 VIMAALQTKGYEAVWWDKRRDVGAIALTNVMGFIMNLPSSLCWGP-LKLPLKRQHWICVR 144
Query: 130 NINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVT--RIENSKSY 181
+ G YYNLDSKL PE IG + +L ++L+ L + EL +V +E +S+
Sbjct: 145 EVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLVVPEEVEAHQSW 198
>sp|O82391|JOSL_ARATH Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2
SV=1
Length = 360
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 21/169 (12%)
Query: 6 EAQEIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINL-----SPQTW------L 54
+++ IYHE+Q + C LH LNNLFQ+ F+K L+ I L + +TW L
Sbjct: 3 DSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVL 62
Query: 55 NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCI---DQQKVEGYILNIPSQFK 111
PH + + GNYD+NV++TAL+ KG W D+R I D + G +LN+P +
Sbjct: 63 KPHHNTI-TGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADTLMGIVLNVPVKRY 121
Query: 112 IGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRD 160
G + + RHW+ VR ING++YNLDS L P+ + R++D V D
Sbjct: 122 GGLW-----RSRHWVVVRKINGVWYNLDSDLVVPQ-LFRDDDEVRGFLD 164
>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1
Length = 280
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 41/163 (25%)
Query: 10 IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINL-----------------SPQT 52
++YHE Q LCA+H +N + Q P FS+ DL + +L +P
Sbjct: 9 MLYHEVQESNLCAVHCVNTVLQGP-FFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGD 67
Query: 53 WL--NPHRSILGLGNYDINVIMTALQKKGFES---NWFDRRKDPKCIDQQKVEGYILNIP 107
+L H LG G++ I V+ AL+ + N D +P ID + +I ++
Sbjct: 68 FLAEESHNVSLG-GDFSIQVLQKALEVWDLQVIPLNCPD--AEPAQIDPELESAFICHL- 123
Query: 108 SQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGR 150
HW +R +NG +YN DS L P+H+ +
Sbjct: 124 --------------HDHWFCIRKVNGEWYNFDSLLAAPQHLSK 152
>sp|P54252|ATX3_HUMAN Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=4
Length = 364
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQ----------------T 52
E I+HEKQ LCA H LNNL Q + FS +L I L + T
Sbjct: 2 ESIFHEKQEGSLCAQHCLNNLLQG-EYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT 60
Query: 53 WL-NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPSQF 110
+L P ++ G + I VI AL+ G E F+ + + ID +I N
Sbjct: 61 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNY---- 116
Query: 111 KIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE-- 168
+ HW TVR + ++NL+S L PE I YL L+ + +E
Sbjct: 117 -----------KEHWFTVRKLGKQWFNLNSLLTGPELISD-----TYLALFLAQLQQEGY 160
Query: 169 -LFVV 172
+FVV
Sbjct: 161 SIFVV 165
>sp|O35815|ATX3_RAT Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=1 SV=1
Length = 355
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 42/185 (22%)
Query: 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWL-------------- 54
E I+HEKQ LCA H LNNL Q + FS +L I L + L
Sbjct: 2 ESIFHEKQEGSLCAQHCLNNLLQG-EYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRT 60
Query: 55 ---NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPSQF 110
P ++ G + I VI AL+ G E F+ + + ID +I N
Sbjct: 61 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNY---- 116
Query: 111 KIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE-- 168
+ HW TVR + ++NL+S L PE I YL L+ + +E
Sbjct: 117 -----------KEHWFTVRKLGKQWFNLNSLLTGPELISD-----TYLALFLAQLQQEGY 160
Query: 169 -LFVV 172
+FVV
Sbjct: 161 SIFVV 165
>sp|Q9CVD2|ATX3_MOUSE Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2
Length = 355
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 42/185 (22%)
Query: 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWL-------------- 54
E I+HEKQ LCA H LNNL Q + FS +L I L + L
Sbjct: 2 ESIFHEKQEGSLCAQHCLNNLLQG-EYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRT 60
Query: 55 ---NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPSQF 110
P ++ G + I VI AL+ G E F+ + + ID +I N
Sbjct: 61 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNY---- 116
Query: 111 KIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE-- 168
+ HW TVR + ++NL+S L PE I YL L+ + +E
Sbjct: 117 -----------KEHWFTVRKLGKQWFNLNSLLTGPELISD-----TYLALFLAQLQQEGY 160
Query: 169 -LFVV 172
+FVV
Sbjct: 161 SIFVV 165
>sp|Q9W689|ATX3_CHICK Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1
Length = 363
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDI 68
E I+HE+Q LCA H LNNL Q + FS +L I L + R + G
Sbjct: 2 ESIFHERQEGSLCAQHCLNNLLQG-EYFSPVELSSIAQQLDEE-----ERMRMAEGGVSS 55
Query: 69 NVIMTALQKKGF---ESNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIK---- 121
T LQ+ +S +F + + +E + N P ++G PI
Sbjct: 56 EEYRTFLQQPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGI---DPINEKSF 112
Query: 122 ----RRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKE---LFVV 172
+ HW TVR + ++NL+S L PE I YL L+ + +E +FVV
Sbjct: 113 ICNYKEHWFTVRKLGKQWFNLNSLLMGPELISD-----TYLALFLAQLQQEGYSIFVV 165
>sp|Q8LQ36|ATX3_ORYSJ Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica
GN=Os01g0851400 PE=3 SV=1
Length = 336
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 40/164 (24%)
Query: 10 IIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQ------------------ 51
++YHE Q +LCA+H +N Q P FS+ DL + ++L +
Sbjct: 12 LLYHEVQEGKLCAVHCVNTTLQGP-FFSEFDLSALAVDLDQRERQVMSEGAAGAATTAAG 70
Query: 52 ----TWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQKVE-GYILNI 106
H LG G++ I V+ AL+ + D C+ ++E +I ++
Sbjct: 71 DFLAEGEGSHNVSLG-GDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFICHL 129
Query: 107 PSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGR 150
+ HW +R +NG +YN +S PEH+ +
Sbjct: 130 ---------------QDHWFCIRKVNGEWYNFNSLYPAPEHLSK 158
>sp|Q9H3M9|ATX3L_HUMAN Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2
Length = 355
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 34/159 (21%)
Query: 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWL-------------- 54
+ I+HEKQ LCA H LNNL Q + FS +L I L + +
Sbjct: 2 DFIFHEKQEGFLCAQHCLNNLLQG-EYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA 60
Query: 55 ---NPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKC-IDQQKVEGYILNIPSQF 110
P ++ G + I VI AL+ G E F+ + K ID +I N
Sbjct: 61 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNY---- 116
Query: 111 KIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIG 149
++HW T+R ++NL+S L PE I
Sbjct: 117 -----------KQHWFTIRKFGKHWFNLNSLLAGPELIS 144
>sp|O17850|ATX3_CAEEL Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1
Length = 317
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 11 IYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSP--QTWLN-----PHRS--IL 61
I+ E Q LCA HALN L Q+ + DL ++ I + Q L P RS +
Sbjct: 10 IFFEHQEAALCAQHALNMLLQD-ALYKWQDLRDLAIQMDKMEQQILGNANPTPGRSENMN 68
Query: 62 GLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQQ----KVEGYILNIPSQFKIGKYVP 117
G + I V+ AL+ + ++P +D + YI N+
Sbjct: 69 ESGYFSIQVLEKALETFSLK---LTNIENPAMVDYKNNPLTARAYICNL----------- 114
Query: 118 TPIKRRHWLTVRNINGIYYNLDS 140
R HW +R ++ L+S
Sbjct: 115 ----REHWFVLRKFGNQWFELNS 133
>sp|Q6CP05|FYV10_KLULA Protein FYV10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=FYV10
PE=3 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 22/88 (25%)
Query: 116 VPTPIKRRHWLTVRNI--------NGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDI-- 165
+P+ + +R+W N+ G + L++ L++P ++E +E L D+++ +
Sbjct: 22 IPSELLKRNWDKFNNLYTSYSVELQGQFATLNTLLEDP---NKDEQSIEKLNDIINTVNI 78
Query: 166 ---------DKELFVVTRIENSKSYFKE 184
D EL ++ RIE YFK+
Sbjct: 79 LQKRLSQLHDNELTILERIEKRVEYFKQ 106
>sp|B4R8K5|RPOB_PHEZH DNA-directed RNA polymerase subunit beta OS=Phenylobacterium zucineum
(strain HLK1) GN=rpoB PE=3 SV=1
Length = 1356
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 104 LNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDV-- 161
L +PS+ +G+ T + W G+ + L++ +H G+++ L+E+LRDV
Sbjct: 1119 LGVPSRMNVGQIFETHLG---WAAA----GLGKQVQRLLEDWQHGGQKQALIEHLRDVYG 1171
Query: 162 ----LSDIDKELFVVTR 174
L D ++EL + R
Sbjct: 1172 PDEELPDTEEELVELAR 1188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,570,198
Number of Sequences: 539616
Number of extensions: 3266608
Number of successful extensions: 7114
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7074
Number of HSP's gapped (non-prelim): 23
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)