Query psy16758
Match_columns 186
No_of_seqs 110 out of 204
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:16:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o65_A Putative ataxin-3-like 100.0 5.7E-65 1.9E-69 421.2 12.4 153 9-179 3-173 (191)
2 3zua_A CLD, alpha-hemolysin tr 80.8 13 0.00046 27.1 9.1 100 19-150 12-116 (142)
3 3b79_A Toxin secretion ATP-bin 70.1 9.2 0.00032 27.2 5.5 100 19-150 5-110 (129)
4 3k8u_A Putative ABC transporte 64.2 36 0.0012 25.2 8.0 111 11-150 6-124 (156)
5 2lw6_A Avrpiz-T protein; plant 50.5 6.1 0.00021 27.2 1.4 18 120-137 11-31 (80)
6 2ayn_A Ubiquitin carboxyl-term 49.9 17 0.00059 30.7 4.5 39 98-146 329-368 (404)
7 3i3t_A Ubiquitin carboxyl-term 40.2 39 0.0013 27.6 5.1 60 98-178 295-354 (355)
8 1vjv_A Ubiquitin carboxyl-term 37.1 27 0.00091 29.9 3.7 39 98-146 347-388 (415)
9 3lto_A Mevalonate diphosphate 34.1 33 0.0011 29.5 3.7 29 20-50 119-148 (323)
10 3nhe_A Ubiquitin carboxyl-term 33.9 28 0.00097 28.3 3.2 38 98-146 285-324 (348)
11 1avo_A 11S regulator; proteaso 33.8 1.2 3.9E-05 29.9 -4.4 24 24-48 35-58 (60)
12 2enk_A HUEL, solute carrier fa 30.6 59 0.002 23.8 4.1 41 35-79 25-66 (101)
13 3mhs_A Ubiquitin carboxyl-term 27.6 40 0.0014 29.4 3.2 56 98-174 417-473 (476)
14 2y6e_A Ubiquitin carboxyl-term 27.2 52 0.0018 27.5 3.7 38 98-146 301-340 (367)
15 2v8p_A 4-diphosphocytidyl-2-C- 27.1 47 0.0016 26.8 3.4 30 19-50 103-132 (271)
16 1h72_C HK, homoserine kinase; 25.6 53 0.0018 26.4 3.4 29 20-50 99-127 (296)
17 3mmj_A MYO-inositol hexaphosph 24.2 49 0.0017 28.6 3.1 32 59-90 69-104 (314)
18 2gfo_A Ubiquitin carboxyl-term 23.6 77 0.0026 27.0 4.3 38 98-146 338-377 (396)
19 2oi2_A Mevalonate kinase; enzy 22.9 63 0.0022 25.8 3.4 29 20-50 97-125 (292)
20 3d6w_A Methyl-accepting/DNA re 22.9 3.4 0.00012 29.2 -3.9 47 9-61 20-66 (111)
21 2ww4_A 4-diphosphocytidyl-2C-m 22.8 67 0.0023 26.3 3.5 29 20-50 112-140 (283)
22 1nb8_A Ubiquitin carboxyl-term 22.8 47 0.0016 27.8 2.7 37 99-146 243-281 (353)
23 4ekf_A Adenain; alpha and beta 22.2 1.1E+02 0.0038 25.0 4.6 53 83-150 23-77 (204)
24 2ra9_A Uncharacterized protein 22.0 46 0.0016 26.0 2.2 37 132-176 32-68 (150)
25 2x7i_A Mevalonate kinase; tran 20.7 73 0.0025 25.8 3.4 31 19-51 108-138 (308)
26 2re3_A Uncharacterized protein 20.5 32 0.0011 28.0 1.0 39 131-176 47-85 (194)
27 1xd3_A Ubiquitin carboxyl-term 20.2 89 0.003 25.7 3.8 29 122-150 167-195 (230)
28 1kkh_A Mevalonate kinase; mixe 20.2 78 0.0027 25.7 3.4 29 20-50 122-150 (317)
No 1
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=100.00 E-value=5.7e-65 Score=421.23 Aligned_cols=153 Identities=33% Similarity=0.490 Sum_probs=143.2
Q ss_pred ccceeeecchhhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCccCc-----------------cCCCCCcCCCCCccHHHH
Q psy16758 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTW-----------------LNPHRSILGLGNYDINVI 71 (186)
Q Consensus 9 ~~iYhEkQ~~~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~~-----------------~nph~n~~~~GNydinVL 71 (186)
+.||||||+++|||+|||||||||+ +||++||++||++||++++ .+||+||+|+||||||||
T Consensus 3 ~~IYhEkQ~~~LCalHaLNnLLQg~-~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl 81 (191)
T 3o65_A 3 DFIFHEKQEGFLCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVI 81 (191)
T ss_dssp TTSCCCCCCTTCHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHH
T ss_pred ccceeeccchhhHHHHHHHHHhccc-cCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHH
Confidence 4699999999999999999999999 8999999999999998765 389999999999999999
Q ss_pred HHHHHhcCCeeEEecCCCCC-cccCCcCceEEEeecccccccccccCCCCCCCceEEEEEECCEEEEecCCCCCCeeeCC
Q psy16758 72 MTALQKKGFESNWFDRRKDP-KCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGR 150 (186)
Q Consensus 72 ~~AL~~~g~~~~w~d~r~~~-~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~ 150 (186)
++||++||++++|||+|++. ..+|+.++.|||||+ +|||||||||+|+||||||++++|+.|++
T Consensus 82 ~~AL~~~glelv~~d~~~~~~~~~~p~~~~~FI~N~---------------~~HWfaiRkigg~WyNLdS~l~~P~~i~~ 146 (191)
T 3o65_A 82 SNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNY---------------KQHWFTIRKFGKHWFNLNSLLAGPELISD 146 (191)
T ss_dssp HHHHHTTTCEEEETTCHHHHHTCCCGGGCCEEEEEE---------------SSCEEEEEEETTEEEECCTTSSSCEEECH
T ss_pred HHHHHHcCCeEEECCCchhhhhcCChhhhhhhhhcc---------------ccceeeEEecCCEEEEccCCCCCCCCcCh
Confidence 99999999999999999875 578999999999996 79999999999999999999999999998
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEecCccc
Q psy16758 151 EEDLVEYLRDVLSDIDKELFVVTRIENSK 179 (186)
Q Consensus 151 ~~~l~~yL~~~L~~~g~~iFvV~~~~~~~ 179 (186)
+ +|..|| ++|+++||+||||++..|..
T Consensus 147 ~-yL~~fL-~ql~~eg~siFvV~g~lP~~ 173 (191)
T 3o65_A 147 T-CLANFL-ARLQQQAYSVFVVKGDLPDC 173 (191)
T ss_dssp H-HHHHHH-GGGGSTTEEEEEEESCCCCC
T ss_pred H-HHHHHH-HHHHHCCCEEEEEcCCCCCC
Confidence 4 899999 67889999999999987753
No 2
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=80.77 E-value=13 Score=27.12 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=62.1
Q ss_pred hhHHHHHhhhhhC--CCCCCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCCCCCcccCC
Q psy16758 19 ELCALHALNNLFQ--NPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQ 96 (186)
Q Consensus 19 ~lCalHaLNnLlQ--~~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r~~~~~i~~ 96 (186)
.-|++.||-.+++ |. -+|.++|.+. +... .+-.+..-|.+|.+..|+++..+... .+.+..
T Consensus 12 ~dcglacLa~i~~~~g~-~~s~~~L~~~---~~~~-----------~~g~s~~~l~~aa~~~Gl~a~~~~~~--~~~L~~ 74 (142)
T 3zua_A 12 IDYGLYALEILAQYHNV-SVNPEEIKHR---FDTD-----------GTGLGLTSWLLAAKSLELKVKQVKKT--IDRLNF 74 (142)
T ss_dssp CCHHHHHHHHHHHHTTC-CCCHHHHHHH---TCTT-----------SSCCCHHHHHHHHHTTTEEEEEEECC--HHHHTT
T ss_pred CCcHHHHHHHHHHHcCC-CCCHHHHHHH---cCCC-----------cCCcCHHHHHHHHHHCCCeeEEeecC--HHHHhc
Confidence 4699999887764 44 3777777653 2211 23478899999999999999987532 222211
Q ss_pred cCceEEEeecccccccccccCCCCCCCceEEEEEEC---CEEEEecCCCCCCeeeCC
Q psy16758 97 QKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNIN---GIYYNLDSKLDNPEHIGR 150 (186)
Q Consensus 97 ~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~---g~wyNLDS~l~~P~~i~~ 150 (186)
- ..=.|+- +...|||.|-+++ +..+-.|.-...|+.++-
T Consensus 75 l-~lP~Il~--------------~~~g~~~Vv~~~~~~~~~~~I~dP~~g~~~~~s~ 116 (142)
T 3zua_A 75 I-SLPALVW--------------REDGRHFILTKVSKEANRYLIFDLEQRNPRVLEQ 116 (142)
T ss_dssp S-SSSEEEC--------------CTTSCCEEEEEEETTTTEEEEEETTTTEEEEEEH
T ss_pred C-CCCEEEE--------------EcCCCEEEEEEEeCCCCEEEEEcCCCCCcEEecH
Confidence 0 0112322 1234556666674 579999987666888865
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.07 E-value=9.2 Score=27.16 Aligned_cols=100 Identities=16% Similarity=-0.019 Sum_probs=61.6
Q ss_pred hhHHHHHhhhhhC--CCCCCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecCCCCCcccCC
Q psy16758 19 ELCALHALNNLFQ--NPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDRRKDPKCIDQ 96 (186)
Q Consensus 19 ~lCalHaLNnLlQ--~~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~r~~~~~i~~ 96 (186)
.-|++-||=.+++ |. -+|.++|.+ .+.. ..+..+..-|.+|++..|+++..+... .+.+..
T Consensus 5 ~dcgla~L~~i~~~~g~-~~~~~~l~~---~~~~-----------~~~g~s~~~l~~~a~~~Gl~~~~~~~~--~~~L~~ 67 (129)
T 3b79_A 5 KDPLLNSLIYVSRYYGL-ANSPEALVN---GLPL-----------SDGKLTPFLLPRAAERAGLVAKENRAE--LEKISS 67 (129)
T ss_dssp CCHHHHHHHHHHHHTTC-CCCHHHHHT---TCCC-----------BTTBCCTTTHHHHHHHHTEEEEEEECC--GGGSCG
T ss_pred CCcHHHHHHHHHHHhCC-CCCHHHHHh---cCCC-----------cCCCCCHHHHHHHHHHCCCeEEEEECC--HHHCCc
Confidence 3588888777764 44 266666543 3321 124466777999999999999987642 222211
Q ss_pred cCceEEEeecccccccccccCCCCCCCceEEEEEECC---EEEEecCC-CCCCeeeCC
Q psy16758 97 QKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNING---IYYNLDSK-LDNPEHIGR 150 (186)
Q Consensus 97 ~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g---~wyNLDS~-l~~P~~i~~ 150 (186)
-. .=+|+-+ ...||+.|.++++ ..+-.|.. -.+++.++-
T Consensus 68 l~-lP~I~~~--------------~~~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~ 110 (129)
T 3b79_A 68 LI-LPAILVL--------------KGGDSCVLNSINMETREAEVTTLESGMVPISIPL 110 (129)
T ss_dssp GG-CSEEEEE--------------GGGEEEEEEEEETTTTEEEEECTTTTTSCEEEEH
T ss_pred CC-CCEEEEE--------------cCCCEEEEEEEcCCCceEEEEccCCCCCcEEeeH
Confidence 00 1133321 3569999999965 57788875 356787764
No 4
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=64.19 E-value=36 Score=25.15 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=68.7
Q ss_pred ceeeecc-hhhHHHHHhhhhhC--CCCCCCHHHHHHHHhhcCccCccCCCCCcCCCCCccHHHHHHHHHhcCCeeEEecC
Q psy16758 11 IYHEKQM-KELCALHALNNLFQ--NPKTFSKADLDEICINLSPQTWLNPHRSILGLGNYDINVIMTALQKKGFESNWFDR 87 (186)
Q Consensus 11 iYhEkQ~-~~lCalHaLNnLlQ--~~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~~~GNydinVL~~AL~~~g~~~~w~d~ 87 (186)
+-+-+|. ..-|++.||-.+++ |. -+|.++|.+. +.. +.+..+..-|.+|++..|+++..+..
T Consensus 6 ~p~~~Q~~~~dcglacLa~i~~~~g~-~~s~~~L~~~---~~~-----------~~~g~s~~~l~~~a~~~Gl~a~~~~~ 70 (156)
T 3k8u_A 6 YKLVPQIDTRDCGPAVLASVAKHYGS-NYSIAYLREL---SKT-----------NKQGTTALGIVEAAKKLGFETRSIKA 70 (156)
T ss_dssp CCCCCCSSTTCHHHHHHHHHHHHTTC-CCCHHHHHHH---TTC-----------BTTBCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CceEECCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHH---cCC-----------CCCCcCHHHHHHHHHHCCCeeEEEEe
Confidence 4455676 46899999988774 44 3777766543 221 12447889999999999999988754
Q ss_pred CCC---CcccCCcCceEEEeecccccccccccCCCCCCCceEEEEEEC-CEEEEecCCCC-CCeeeCC
Q psy16758 88 RKD---PKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNIN-GIYYNLDSKLD-NPEHIGR 150 (186)
Q Consensus 88 r~~---~~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~-g~wyNLDS~l~-~P~~i~~ 150 (186)
... +..+.+ =+|+-+... | ...||+.|.+++ +..+-.|.... .|+.++-
T Consensus 71 ~~~~~~l~~~~l----P~I~~~~~~---g-------~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~ 124 (156)
T 3k8u_A 71 DMTLFDYNDLTY----PFIVHVIKG---K-------RLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSK 124 (156)
T ss_dssp CGGGGGCTTCCS----CEEEEEEET---T-------EEEEEEEEEEEETTEEEEEECSTTTEEEEEEH
T ss_pred ehhhhhHhcCCC----CEEEEEEec---C-------CCcEEEEEEEEcCCEEEEEcCCCCcceEEEcH
Confidence 311 112211 133321000 0 025999999885 56778887665 4888865
No 5
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=50.51 E-value=6.1 Score=27.18 Aligned_cols=18 Identities=39% Similarity=0.857 Sum_probs=14.6
Q ss_pred CCCCceEEEEEECC---EEEE
Q psy16758 120 IKRRHWLTVRNING---IYYN 137 (186)
Q Consensus 120 ~~~~HWfaIRki~g---~wyN 137 (186)
+.+|||=+|||-.| .+|.
T Consensus 11 yngrhwgtirkkagwavrfye 31 (80)
T 2lw6_A 11 YNGRHWGTIRKKAGWAVRFYE 31 (80)
T ss_dssp ETTEEEEEEEEETTSCEEEEE
T ss_pred EcCccceeeeeccceEEEeee
Confidence 46899999999987 5664
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=49.94 E-value=17 Score=30.71 Aligned_cols=39 Identities=5% Similarity=0.073 Sum_probs=30.3
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE-CCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI-NGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki-~g~wyNLDS~l~~P~ 146 (186)
...|+|+..... ..+-|++|..|- +|.||.+|=..-.|+
T Consensus 329 ~L~avv~H~G~s----------~~~GHY~a~v~~~~~~W~~fnD~~V~~v 368 (404)
T 2ayn_A 329 DLQAVLTHQGRS----------SSSGHYVSWVKRKQDEWIKFDDDKVSIV 368 (404)
T ss_dssp EEEEEEEEESSS----------TTSSEEEEEEEEETTEEEEEBTTBCCCB
T ss_pred EEEEEEEecCCC----------CCCCCeEEEEECCCCeEEEeecccceec
Confidence 478999986321 246799999998 999999998776665
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=40.24 E-value=39 Score=27.55 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=39.7
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEECCEEEEecCCCCCCeeeCChhHHHHHHHHHhccCCcEEEEEEecCc
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNINGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIEN 177 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~l~~yL~~~L~~~g~~iFvV~~~~~ 177 (186)
...|+|+...+ ..+.|++|..|-++.||.+|=..-.|+. .+ +++....|-+|-.+..++
T Consensus 295 ~L~avv~H~G~-----------~~~GHY~~~~~~~~~W~~~nD~~V~~v~---~~-------~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 295 QLYALCNHSGS-----------VHYGHYTALCRCQTGWHVYNDSRVSPVS---EN-------QVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp EEEEEEEEEEE-----------TTEEEEEEEEEETTEEEEEETTEEEEEC---HH-------HHHTSCCSEEEEEEC---
T ss_pred EEEEEEEecCC-----------CCCCeEEEEEEcCCeEEEEcCCCcEECC---HH-------HcCCCCcEEEEEEeccCC
Confidence 36788888531 2468999999999999999987665552 22 234567787777666655
Q ss_pred c
Q psy16758 178 S 178 (186)
Q Consensus 178 ~ 178 (186)
+
T Consensus 354 ~ 354 (355)
T 3i3t_A 354 P 354 (355)
T ss_dssp -
T ss_pred C
Confidence 4
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=37.13 E-value=27 Score=29.88 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=29.5
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE---CCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI---NGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki---~g~wyNLDS~l~~P~ 146 (186)
...|+|+..... ..+-|++|..|- +|.||.+|=..-.++
T Consensus 347 ~L~aVv~H~G~s----------~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v 388 (415)
T 1vjv_A 347 NLIGVITHQGAN----------SESGHYQAFIRDELDENKWYKFNDDKVSVV 388 (415)
T ss_dssp EEEEEEEEESSS----------TTSSEEEEEEECSSCTTCEEEEETTEEEEE
T ss_pred EEEEEEEecCCC----------CCCCCEEEEEeCCCCCCcEEEeECCcCeEc
Confidence 578999996311 246799999998 899999998655554
No 9
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=34.13 E-value=33 Score=29.51 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=25.8
Q ss_pred hHHHHHhhhhhCCCCCC-CHHHHHHHHhhcCc
Q psy16758 20 LCALHALNNLFQNPKTF-SKADLDEICINLSP 50 (186)
Q Consensus 20 lCalHaLNnLlQ~~~~f-t~~dL~~Ia~~Ld~ 50 (186)
+|.+-|+|.|++-+ + |..+|..||++...
T Consensus 119 ~~~~~aln~l~gl~--l~s~~eL~~lA~~gsG 148 (323)
T 3lto_A 119 KCASIALSELTQKP--LPSIDEQAQLSRLGSG 148 (323)
T ss_dssp HHHHHHHHHHHTCC--CCCHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhCCC--CCCHHHHHHHHHHhCC
Confidence 68889999999988 8 99999999987754
No 10
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=33.94 E-value=28 Score=28.35 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=28.5
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE--CCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI--NGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki--~g~wyNLDS~l~~P~ 146 (186)
...|+|+...+ ..+.|++|..|- +|.||-+|-..-.|+
T Consensus 285 ~L~avv~H~G~-----------~~~GHY~~~~~~~~~~~W~~~nD~~V~~v 324 (348)
T 3nhe_A 285 NLYAVSNHSGT-----------TMGGHYTAYCRSPGTGEWHTFNDSSVTPM 324 (348)
T ss_dssp EEEEEEEEEEC-----------SSCEEEEEEEECTTTCCEEEEETTEEEEE
T ss_pred EEEEEEEccCC-----------CCCcccEEEEccCCCCcEEEEeCCCceEC
Confidence 36888888631 236799998887 789999998766655
No 11
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=33.83 E-value=1.2 Score=29.92 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=18.4
Q ss_pred HHhhhhhCCCCCCCHHHHHHHHhhc
Q psy16758 24 HALNNLFQNPKTFSKADLDEICINL 48 (186)
Q Consensus 24 HaLNnLlQ~~~~ft~~dL~~Ia~~L 48 (186)
-=||+||++| .|+-.+|++|...|
T Consensus 35 ~eln~LL~~~-~f~~~dls~l~~~l 58 (60)
T 1avo_A 35 SELDAFLKEP-ALNEANLSNLKAPL 58 (60)
T ss_dssp HHHHHHHHSG-GGCCSCTTSSCCCC
T ss_pred HHHHHHHccc-ccccccHHHhcccc
Confidence 4589999999 69988887765544
No 12
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Probab=30.61 E-value=59 Score=23.80 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhhcCccCccCCCCCcCC-CCCccHHHHHHHHHhcC
Q psy16758 35 TFSKADLDEICINLSPQTWLNPHRSILG-LGNYDINVIMTALQKKG 79 (186)
Q Consensus 35 ~ft~~dL~~Ia~~Ld~~~~~nph~n~~~-~GNydinVL~~AL~~~g 79 (186)
..+..||+. |.--..-|||.+-.. .=+.-.+|...||++||
T Consensus 25 lLkd~dL~~----L~~i~k~NPh~~~~~MkLYlr~qVe~rAlevWG 66 (101)
T 2enk_A 25 CLKSSDLEQ----LRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWG 66 (101)
T ss_dssp CCCHHHHHH----SCCBCTTCSSCSSCCCCEEEHHHHHHHHHHHSS
T ss_pred CCChhhhhh----CcccccCCCCCCCCCceeehHHHHHHHHHHHHC
Confidence 467788887 443334588875321 23345799999999998
No 13
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=27.64 E-value=40 Score=29.38 Aligned_cols=56 Identities=18% Similarity=0.412 Sum_probs=36.7
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE-CCEEEEecCCCCCCeeeCChhHHHHHHHHHhccCCcEEEEEEe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI-NGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTR 174 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki-~g~wyNLDS~l~~P~~i~~~~~l~~yL~~~L~~~g~~iFvV~~ 174 (186)
...|+|+...+ ..+.|++|..|. +|+||-+|=..-.|+ +.+ +++....|=+|-+++
T Consensus 417 ~L~avv~H~G~-----------~~~GHY~a~vr~~~~~W~~fnD~~V~~v---~~~-------~v~~~~aYiLfY~r~ 473 (476)
T 3mhs_A 417 ELIGIVSHKGT-----------VNEGHYIAFCKISGGQWFKFNDSMVSSI---SQE-------EVLKEQAYLLFYTIR 473 (476)
T ss_dssp EEEEEEEEEEC-----------SSSEEEEEEEECTTSCEEEEETTEEEEE---CHH-------HHTTSCEEEEEEEEE
T ss_pred EEEEEEEeCCC-----------CCCCceEEEEECCCCcEEEEeCCceEEC---CHH-------HhccCCcEEEEEEEe
Confidence 35788887521 246799999887 789999998765554 222 234456676665554
No 14
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=27.16 E-value=52 Score=27.46 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=27.5
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE--CCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI--NGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki--~g~wyNLDS~l~~P~ 146 (186)
...|+|+...+ ..+.|++|..|- +|.||.+|=..-.++
T Consensus 301 ~L~avv~H~G~-----------~~~GHY~a~~~~~~~~~W~~fnD~~V~~v 340 (367)
T 2y6e_A 301 DLIAVSNHYGA-----------MGVGHYTAYAKNKLNGKWYYFDDSNVSLA 340 (367)
T ss_dssp EEEEEEEEECS-----------SSSCEEEEEEECTTTCCEEEEETTEEEEC
T ss_pred EEEEEeecCCC-----------CCCCeeeEEEEcCCCCeEEEECCCCceEC
Confidence 36688887521 247899999887 589999987654443
No 15
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=27.13 E-value=47 Score=26.80 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=26.7
Q ss_pred hhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 19 ELCALHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 19 ~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
..+++.|+|.++..+ ++.++|.+||.++..
T Consensus 103 a~a~l~al~~l~~~~--l~~~el~~la~~~e~ 132 (271)
T 2v8p_A 103 LAVVLKKVNELLGSP--LSEEELRELVGSISA 132 (271)
T ss_dssp HHHHHHHHHHHTTCC--SCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCC--cCHHHHHHHHHHhCC
Confidence 367899999999887 999999999999964
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=25.56 E-value=53 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=25.9
Q ss_pred hHHHHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 20 LCALHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 20 lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
.+.+.|+|.++..+ +++.+|.+||.++..
T Consensus 99 ~a~~~al~~l~~~~--l~~~~l~~la~~~e~ 127 (296)
T 1h72_C 99 AGTAYAINELFKLN--LDKLKLVDYASYGEL 127 (296)
T ss_dssp HHHHHHHHHHTTCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHhcC
Confidence 67889999999877 999999999998865
No 17
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein tyrosine phosphatase, inositol phosphate, I phosphatase; HET: IHP; 1.60A {Selenomonas ruminantium} SCOP: c.45.1.4 PDB: 1u24_A 1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A 3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Probab=24.25 E-value=49 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=26.7
Q ss_pred CcCCCCCccHHHHHHHHHh----cCCeeEEecCCCC
Q psy16758 59 SILGLGNYDINVIMTALQK----KGFESNWFDRRKD 90 (186)
Q Consensus 59 n~~~~GNydinVL~~AL~~----~g~~~~w~d~r~~ 90 (186)
++.|+|.+|+.-|.+.|+. ..-.++|+|.|+-
T Consensus 69 ~i~GsaQpS~~gl~~il~~L~~~~~~~vvwVdLREE 104 (314)
T 3mmj_A 69 HISGSSAFTPAQLKNVAAKLREKTAGPIYDVDLRQE 104 (314)
T ss_dssp CEEEECCCCHHHHHHHHHHHHTTCSSCEEEEEEECS
T ss_pred ccceecCCCHHHHHHHHHHHhccCCCcEEEEEcCcc
Confidence 6899999999998888876 3578999999863
No 18
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=23.58 E-value=77 Score=27.05 Aligned_cols=38 Identities=5% Similarity=0.041 Sum_probs=27.1
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE--CCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI--NGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki--~g~wyNLDS~l~~P~ 146 (186)
...|+|+...+ ..+.|++|..|- ++.||.+|=..-.++
T Consensus 338 ~L~avv~H~G~-----------~~~GHY~a~v~~~~~~~W~~fnD~~V~~v 377 (396)
T 2gfo_A 338 NLFSVSNHYGG-----------LDGGHYTAYCKNAARQRWFKFDDHEVSDI 377 (396)
T ss_dssp EEEEEEEEESC-----------TTTCEEEEEEEETTTTEEEEEETTEEEEC
T ss_pred EEEEEEEecCC-----------CCCCceEEEEcCCCCCCEEEEeCCCeEEC
Confidence 36788887521 257899998886 489999998654443
No 19
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=22.93 E-value=63 Score=25.77 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=25.4
Q ss_pred hHHHHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 20 LCALHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 20 lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
.+.+.|+|.++..+ +++.+|.++|.++..
T Consensus 97 ~a~~~al~~~~~~~--l~~~~l~~la~~~E~ 125 (292)
T 2oi2_A 97 IAAIRAVFDYYQAD--LPHDVLEILVNRAEM 125 (292)
T ss_dssp HHHHHHHHHHHTCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 67789999999877 899999999998753
No 20
>3d6w_A Methyl-accepting/DNA response regulator; structural genomics, APC7590, lyttr DNA-binding domain, METH accepting/DNA response regulator, PSI-2; 2.40A {Bacillus cereus}
Probab=22.88 E-value=3.4 Score=29.16 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=36.3
Q ss_pred ccceeeecchhhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCccCccCCCCCcC
Q psy16758 9 EIIYHEKQMKELCALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPHRSIL 61 (186)
Q Consensus 9 ~~iYhEkQ~~~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~~~nph~n~~ 61 (186)
+-+|.|.+... |-+|+-+ +. +.....|.++..+|++..++..|||..
T Consensus 20 dI~yie~~~~~-~~i~t~~----~~-~~~~~tL~~le~~L~~~~F~RihrS~i 66 (111)
T 3d6w_A 20 KVMYLEAKDKK-TYVNAEE----LT-GTHKYSLQEFEYLLPKDSFIRCHRSFI 66 (111)
T ss_dssp GEEEEEEETTE-EEEEESS----CE-EEESSCHHHHHHHSCTTTEEEEETTEE
T ss_pred HEEEEEEeCCE-EEEEECC----CE-EEhhhhHHHHHhhCCcCCEEEeehhhE
Confidence 36888988654 4478654 45 667788999999999888889999866
No 21
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=22.78 E-value=67 Score=26.31 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.9
Q ss_pred hHHHHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 20 LCALHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 20 lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
.+++.|+|.++..+ +++++|.+||.++..
T Consensus 112 ~a~l~al~~l~~~~--l~~~~l~~la~~~e~ 140 (283)
T 2ww4_A 112 ATVLVALNHLWQCG--LSMDELAEMGLTLGA 140 (283)
T ss_dssp HHHHHHHHHHTTCC--CCHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhcCCC--cCHHHHHHHHHHhCC
Confidence 67789999999887 999999999998864
No 22
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=22.76 E-value=47 Score=27.82 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=26.7
Q ss_pred ceEEEeecccccccccccCCCCCCCceEEEEE--ECCEEEEecCCCCCCe
Q psy16758 99 VEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN--INGIYYNLDSKLDNPE 146 (186)
Q Consensus 99 ~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRk--i~g~wyNLDS~l~~P~ 146 (186)
..|+|+...+ ..+.|++|..| -+|.||.+|-..-.|+
T Consensus 243 L~avv~H~G~-----------~~~GHY~a~v~~~~~~~W~~fnD~~V~~v 281 (353)
T 1nb8_A 243 LHAVLVHSGD-----------NHGGHYVVYLNPKGDGKWCKFDDDVVSRC 281 (353)
T ss_dssp EEEEEEEESS-----------TTCCCEEEEECTTSSSCCEEEETTEEEEC
T ss_pred EEEEEEEeCC-----------CCCcEEEEEEecCCCCCEEEEECcceEEC
Confidence 5788887522 24789999887 4789999997654443
No 23
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=22.19 E-value=1.1e+02 Score=25.01 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=34.2
Q ss_pred EEecCCCCCcccCCcCceEEEeecccccccccccCCCCCCCceEEEE--EECCEEEEecCCCCCCeeeCC
Q psy16758 83 NWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR--NINGIYYNLDSKLDNPEHIGR 150 (186)
Q Consensus 83 ~w~d~r~~~~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIR--ki~g~wyNLDS~l~~P~~i~~ 150 (186)
=-||+| =+.-++.++..--|+|+-++-.- +-||+|.- ......|-+| |--.++
T Consensus 23 GtFDkr-FPGFl~~~k~a~AIVNTg~retG---------GvHWiA~Aw~P~s~~~YmFD-----PfG~sd 77 (204)
T 4ekf_A 23 GTYDKR-FPGFVSPHKLACAIVNTAGRETG---------GVHWMAFAWNPRSKTCYLFE-----PFGFSD 77 (204)
T ss_dssp EEEESS-CCSCCCTTSCEEEEEESCC-------------CCCEEEEEEETTTTEEEEEC-----TBTTCS
T ss_pred ccccCC-CCCccCCCCcceeEEecCCcccC---------ceeEEEeEecCCcceEEEeC-----CCCCCH
Confidence 345666 33456777888889998766544 48999985 3456777777 666666
No 24
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=22.00 E-value=46 Score=25.95 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=28.1
Q ss_pred CCEEEEecCCCCCCeeeCChhHHHHHHHHHhccCCcEEEEEEecC
Q psy16758 132 NGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIE 176 (186)
Q Consensus 132 ~g~wyNLDS~l~~P~~i~~~~~l~~yL~~~L~~~g~~iFvV~~~~ 176 (186)
+|.||-..|... + .|...+.+.|+.++..-|+|++.|
T Consensus 32 dG~W~y~G~pI~-r-------~lVrLFssiL~~edg~y~LvTPvE 68 (150)
T 2ra9_A 32 LGDWTYLGTSLP-A-------KFAKLFASILHCIDDEYFLITPVE 68 (150)
T ss_dssp TSCEEETTEECC-H-------HHHHHHHTTEEEETTEEEEECSSC
T ss_pred CCcEEECCcccc-H-------HHHHHHHHheEecCCeEEEECCCE
Confidence 689999998554 2 356677888987777899998754
No 25
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=20.74 E-value=73 Score=25.78 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.5
Q ss_pred hhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCcc
Q psy16758 19 ELCALHALNNLFQNPKTFSKADLDEICINLSPQ 51 (186)
Q Consensus 19 ~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~ 51 (186)
..+.+.|||.++..+ +++.+|.++|.++...
T Consensus 108 ~~a~~~al~~l~~~~--l~~~~l~~la~~~E~~ 138 (308)
T 2x7i_A 108 AVAFVRASYDFLGKS--LTKEELIEKANWAEQI 138 (308)
T ss_dssp HHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 367889999999877 8999999999988643
No 26
>2re3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.50A {Silicibacter pomeroyi dss-3}
Probab=20.52 E-value=32 Score=27.97 Aligned_cols=39 Identities=18% Similarity=0.541 Sum_probs=28.2
Q ss_pred ECCEEEEecCCCCCCeeeCChhHHHHHHHHHhccCCcEEEEEEecC
Q psy16758 131 INGIYYNLDSKLDNPEHIGREEDLVEYLRDVLSDIDKELFVVTRIE 176 (186)
Q Consensus 131 i~g~wyNLDS~l~~P~~i~~~~~l~~yL~~~L~~~g~~iFvV~~~~ 176 (186)
-+|.||-..|....|. |...+.+.|+.++..-|+|++.|
T Consensus 47 ~dG~W~y~GspI~R~~-------lVrLFssiL~re~d~y~LvTPvE 85 (194)
T 2re3_A 47 RDGTWFYQGTPINRPA-------MVRLFSSILKREEDRFYLVTPVE 85 (194)
T ss_dssp TTSCEEETTEECCCHH-------HHHHHHTTEEEETTEEEEECSSC
T ss_pred CCCcEEeCCCCcCCHH-------HHHHHHHhhEecCCEEEEECCCE
Confidence 3689999999655544 55666788876555899998654
No 27
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=20.24 E-value=89 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCceEEEEEECCEEEEecCCCCCCeeeCC
Q psy16758 122 RRHWLTVRNINGIYYNLDSKLDNPEHIGR 150 (186)
Q Consensus 122 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~ 150 (186)
.-|++|.-+++|.=|-||-..+.|+..|.
T Consensus 167 ~~HFI~fV~~~G~LyELDG~k~gPi~~G~ 195 (230)
T 1xd3_A 167 DLHFIALVHVDGHLYELDGRKPFPINHGE 195 (230)
T ss_dssp CEEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred CeEEEEEEeeCCEEEEccCCCCCCeecCC
Confidence 46889988899999999999999999886
No 28
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=20.19 E-value=78 Score=25.73 Aligned_cols=29 Identities=3% Similarity=0.305 Sum_probs=25.5
Q ss_pred hHHHHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 20 LCALHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 20 lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
.+.+.|+|.++..+ +++++|.++|.++..
T Consensus 122 ~a~~~al~~l~~~~--l~~~~l~~~a~~~E~ 150 (317)
T 1kkh_A 122 IGTIKAVSGFYNKE--LKDDEIAKLGYMVEK 150 (317)
T ss_dssp HHHHHHHHHTTTCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 67889999999877 899999999998854
Done!