Query psy16758
Match_columns 186
No_of_seqs 110 out of 204
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 21:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16758.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16758hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fi0a1 a.248.1.1 (A:3-81) Hyp 39.9 7.7 0.00056 25.5 2.3 25 62-86 55-79 (79)
2 d2ayna1 d.3.1.9 (A:100-482) Ub 35.7 19 0.0014 27.4 4.5 39 98-146 319-358 (383)
3 d1h72c1 d.14.1.5 (C:5-167) Hom 33.2 16 0.0011 26.0 3.3 34 22-57 101-134 (163)
4 d1s4ea1 d.14.1.5 (A:5-180) Gal 29.9 20 0.0015 25.0 3.4 31 19-51 107-137 (176)
5 d2hd5a1 d.3.1.9 (A:211-521) Ub 25.5 21 0.0015 26.3 2.9 38 98-146 279-318 (336)
6 d1vjva_ d.3.1.9 (A:) Ubiquitin 22.7 33 0.0024 25.6 3.7 39 98-146 329-370 (397)
7 d1kkha1 d.14.1.5 (A:1-180) Mev 22.6 32 0.0024 23.8 3.4 29 20-50 122-150 (180)
8 d1euva_ d.3.1.7 (A:) Ulp1 prot 21.8 41 0.003 24.6 3.9 26 122-147 112-139 (221)
9 d1xd3a_ d.3.1.6 (A:) Ubiquitin 21.3 39 0.0028 25.8 3.8 29 123-151 167-195 (229)
10 d2etla1 d.3.1.6 (A:1-223) Ubiq 21.0 39 0.0029 25.6 3.8 29 122-150 159-187 (223)
11 d1nlna_ d.3.1.7 (A:) Human ade 21.0 63 0.0046 24.5 4.9 48 82-139 21-70 (203)
12 d1b72a_ a.4.1.1 (A:) Homeobox 20.7 42 0.0031 21.8 3.4 28 23-50 39-66 (88)
13 d2gfoa1 d.3.1.9 (A:762-1109) U 20.5 44 0.0032 24.7 3.9 37 98-145 291-329 (348)
14 d1s7ea1 a.4.1.1 (A:103-152) He 20.3 49 0.0036 18.8 3.3 28 23-50 10-37 (50)
No 1
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=39.93 E-value=7.7 Score=25.50 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCCCccHHHHHHHHHhcCCeeEEec
Q psy16758 62 GLGNYDINVIMTALQKKGFESNWFD 86 (186)
Q Consensus 62 ~~GNydinVL~~AL~~~g~~~~w~d 86 (186)
..++.|...+.++|+..|++++-+|
T Consensus 55 ~~~gidl~~~~~~L~~aG~~v~g~d 79 (79)
T d2fi0a1 55 KLAGTPMDKIVRTLEANGYEVIGLD 79 (79)
T ss_dssp HHHTCCHHHHHHHHHHTTCEEECCC
T ss_pred HHcCCCHHHHHHHHHHCCCeeeCCC
Confidence 3578999999999999999998664
No 2
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.72 E-value=19 Score=27.35 Aligned_cols=39 Identities=5% Similarity=0.076 Sum_probs=28.6
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEE-ECCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN-INGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRk-i~g~wyNLDS~l~~P~ 146 (186)
+..|+|+..... ..+-|.+|.+| -+|.||..|=..-.|+
T Consensus 319 ~L~avi~H~G~s----------~~~GHY~a~vk~~~~~W~~~nD~~V~~v 358 (383)
T d2ayna1 319 DLQAVLTHQGRS----------SSSGHYVSWVKRKQDEWIKFDDDKVSIV 358 (383)
T ss_dssp EEEEEEEEESSS----------TTSSEEEEEEEEETTEEEEEBTTBCCCB
T ss_pred EEEEEEEEECCC----------CCCCCcEEEEECCCCeEEEEECCceEEe
Confidence 579999986322 13568888755 6899999998777776
No 3
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=33.17 E-value=16 Score=26.02 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=26.4
Q ss_pred HHHHhhhhhCCCCCCCHHHHHHHHhhcCccCccCCC
Q psy16758 22 ALHALNNLFQNPKTFSKADLDEICINLSPQTWLNPH 57 (186)
Q Consensus 22 alHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~~~~nph 57 (186)
++.|+|.++.-+ +|+.+|.+||.++.......+|
T Consensus 101 ~l~aln~l~~~~--ls~~~l~~~A~~~e~~~~g~~~ 134 (163)
T d1h72c1 101 TAYAINELFKLN--LDKLKLVDYASYGELASSGAKH 134 (163)
T ss_dssp HHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhCCC--CCHHHHHHHHHHHHHhhcCCCC
Confidence 467999999888 9999999999988644333333
No 4
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=29.86 E-value=20 Score=25.02 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.7
Q ss_pred hhHHHHHhhhhhCCCCCCCHHHHHHHHhhcCcc
Q psy16758 19 ELCALHALNNLFQNPKTFSKADLDEICINLSPQ 51 (186)
Q Consensus 19 ~lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~~ 51 (186)
..+.+.|+|.++..+ +|+.++.++|.++...
T Consensus 107 ~va~~~al~~~~~~~--~~~~~l~~~a~~~E~~ 137 (176)
T d1s4ea1 107 EVGILEVLNQLYNLN--IDPLKKALLAKKAENE 137 (176)
T ss_dssp HHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHH
Confidence 367899999999877 9999999999998644
No 5
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.53 E-value=21 Score=26.25 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=27.0
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEE--ECCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRN--INGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRk--i~g~wyNLDS~l~~P~ 146 (186)
++.|+|+...+ ..+.|.+|.+| -++.||-.|=..-.++
T Consensus 279 ~L~~vi~H~G~-----------~~~GHY~~~ik~~~~~~W~~~nD~~V~~v 318 (336)
T d2hd5a1 279 NLYAVSNHSGT-----------TMGGHYTAYCRSPGTGEWHTFNDSSVTPM 318 (336)
T ss_dssp EEEEEEEEEEC-----------SSCEEEEEEEECTTTCCEEEEETTEEEEE
T ss_pred eEEEEEEEeCC-----------CCCceEEEEEEcCCCCeEEEEECCceeEC
Confidence 38899998632 24569888887 4689999987654444
No 6
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.71 E-value=33 Score=25.65 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=27.8
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE---CCEEEEecCCCCCCe
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI---NGIYYNLDSKLDNPE 146 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki---~g~wyNLDS~l~~P~ 146 (186)
...|+|+...+.. .+-|-+|.+|- +|.||-.|=..-.|+
T Consensus 329 ~L~aVv~H~G~~~----------~~GHY~ay~r~~~~~~~W~~~nD~~V~~v 370 (397)
T d1vjva_ 329 NLIGVITHQGANS----------ESGHYQAFIRDELDENKWYKFNDDKVSVV 370 (397)
T ss_dssp EEEEEEEEESSST----------TSSEEEEEEECSSCTTCEEEEETTEEEEE
T ss_pred EEEEEEEEecCCC----------CCcCeEEEEECCCCCCEEEEEECCCCEEC
Confidence 5789999863221 35799999874 478999997554544
No 7
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.64 E-value=32 Score=23.77 Aligned_cols=29 Identities=3% Similarity=0.305 Sum_probs=25.2
Q ss_pred hHHHHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 20 LCALHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 20 lCalHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
-|.+.||+.++.-+ ++++++.++|.+...
T Consensus 122 va~~~al~~~~~~~--l~~~~l~~la~~~E~ 150 (180)
T d1kkha1 122 IGTIKAVSGFYNKE--LKDDEIAKLGYMVEK 150 (180)
T ss_dssp HHHHHHHHHTTTCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC--CCHHHHHHHHHHHHH
Confidence 57789999999877 899999999998753
No 8
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.80 E-value=41 Score=24.64 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=19.0
Q ss_pred CCceEEE--EEECCEEEEecCCCCCCee
Q psy16758 122 RRHWLTV--RNINGIYYNLDSKLDNPEH 147 (186)
Q Consensus 122 ~~HWfaI--Rki~g~wyNLDS~l~~P~~ 147 (186)
+.||+.+ ..-.+..+-+||.-..|..
T Consensus 112 ~~HW~l~vi~~~~~~i~~~DSl~~~~~~ 139 (221)
T d1euva_ 112 QSHWALGIIDLKKKTIGYVDSLSNGPNA 139 (221)
T ss_dssp TTEEEEEEEETTTTEEEEECSSCCSCCH
T ss_pred cceEEEEEeeccccceeeeccccCCCcH
Confidence 6899544 4457899999998766654
No 9
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.27 E-value=39 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=26.2
Q ss_pred CceEEEEEECCEEEEecCCCCCCeeeCCh
Q psy16758 123 RHWLTVRNINGIYYNLDSKLDNPEHIGRE 151 (186)
Q Consensus 123 ~HWfaIRki~g~wyNLDS~l~~P~~i~~~ 151 (186)
-|.+|.-.++|.=|-||-..+.|+..|..
T Consensus 167 ~HFI~fV~~~G~lyELDG~k~~Pi~hG~~ 195 (229)
T d1xd3a_ 167 LHFIALVHVDGHLYELDGRKPFPINHGET 195 (229)
T ss_dssp EEEEEEEEETTEEEEECTTSSSCEEEEEC
T ss_pred eeEEEEEeeCCEEEEccCCCCCCcccCCC
Confidence 68888889999999999999999999873
No 10
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.04 E-value=39 Score=25.65 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=26.8
Q ss_pred CCceEEEEEECCEEEEecCCCCCCeeeCC
Q psy16758 122 RRHWLTVRNINGIYYNLDSKLDNPEHIGR 150 (186)
Q Consensus 122 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~ 150 (186)
.-|.+|.-.++|.=|-||-..+.|+..|.
T Consensus 159 ~~HFI~fV~~~G~lyELDG~k~~Pi~hG~ 187 (223)
T d2etla1 159 NFHFILFNNVDGHLYELDGRMPFPVNHGA 187 (223)
T ss_dssp CEEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred ceEEEEEEEeCCEEEEecCCcCCCcccCC
Confidence 47999999999999999999999999985
No 11
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=20.97 E-value=63 Score=24.49 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=32.9
Q ss_pred eEEecCCCCCcccCCcCceEEEeecccccccccccCCCCCCCceEEEE--EECCEEEEec
Q psy16758 82 SNWFDRRKDPKCIDQQKVEGYILNIPSQFKIGKYVPTPIKRRHWLTVR--NINGIYYNLD 139 (186)
Q Consensus 82 ~~w~d~r~~~~~i~~~~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIR--ki~g~wyNLD 139 (186)
+=-||+|= +.-++.++..--|+|+-++-.- +.||+|+- ......|.+|
T Consensus 21 LGtFDkrF-PGFl~~~k~~~AIVNT~~retG---------G~HWlA~Aw~P~s~t~Y~FD 70 (203)
T d1nlna_ 21 LGTYDKRF-PGFVSPHKLACAIVNTAGRETG---------GVHWMAFAWNPRSKTCYLFE 70 (203)
T ss_dssp EEEECTTC-CCCCCTTSCEEEEEESSCTTTC---------CCCEEEEEEETTTTEEEEEC
T ss_pred cccccCCC-CCccCCCccceeEEecCCcccC---------ceeeEEeEecCCcCeEEEEC
Confidence 34467763 3456677888889998665443 59999985 3456778777
No 12
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72 E-value=42 Score=21.80 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=23.8
Q ss_pred HHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 23 LHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 23 lHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
++.|+.+|+...|-|..+..+||..|.-
T Consensus 39 l~~Le~~F~~n~yPs~~~r~~LA~~l~l 66 (88)
T d1b72a_ 39 LTELEKEFHFNKYLSRARRVEIAATLEL 66 (88)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHcCC
Confidence 6778888887669999999999998873
No 13
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.45 E-value=44 Score=24.67 Aligned_cols=37 Identities=5% Similarity=0.066 Sum_probs=26.1
Q ss_pred CceEEEeecccccccccccCCCCCCCceEEEEEE--CCEEEEecCCCCCC
Q psy16758 98 KVEGYILNIPSQFKIGKYVPTPIKRRHWLTVRNI--NGIYYNLDSKLDNP 145 (186)
Q Consensus 98 ~~~gfI~N~~~~~~~g~~~~l~~~~~HWfaIRki--~g~wyNLDS~l~~P 145 (186)
...|+||...+ ..+.|.+|.+|- ++.||-.|=..=.+
T Consensus 291 ~L~avi~H~G~-----------~~~GHY~~~ik~~~~~~W~~~nD~~V~~ 329 (348)
T d2gfoa1 291 NLFSVSNHYGG-----------LDGGHYTAYCKNAARQRWFKFDDHEVSD 329 (348)
T ss_dssp EEEEEEEEESC-----------TTTCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred EEEEEEEEeCC-----------CCCceEEEEEEeCCcCeEEEEECCcCeE
Confidence 38899998521 246798888873 58999998755333
No 14
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.26 E-value=49 Score=18.79 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHhhhhhCCCCCCCHHHHHHHHhhcCc
Q psy16758 23 LHALNNLFQNPKTFSKADLDEICINLSP 50 (186)
Q Consensus 23 lHaLNnLlQ~~~~ft~~dL~~Ia~~Ld~ 50 (186)
+.+|...|+...+-|.++..+||.+|.-
T Consensus 10 ~~~Le~~F~~n~~P~~~~~~~LA~~l~l 37 (50)
T d1s7ea1 10 RRTLHAIFKENKRPSKELQITISQQLGL 37 (50)
T ss_dssp HHHHHHHTTSSCSSTHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCc
Confidence 4677888876548999999999998873
Done!