RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16759
(512 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 109 bits (275), Expect = 6e-28
Identities = 39/79 (49%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKIL-MASGYDCK 487
G++ GPV+AGVIGA++P+YD+W +TVN+ASRM+S GV G++ V+E+T ++L ++
Sbjct: 105 GIHTGPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHVSEETYRLLKTREQFEFT 164
Query: 488 CRGQIFVKGKGTLTTYFVK 506
RG++ VKGKG + TYF+
Sbjct: 165 ERGEVEVKGKGKMETYFLN 183
Score = 78.1 bits (193), Expect = 9e-17
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 225 LYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSIEK 284
+Y + Y+ + ++FA I + + E +RLLN++ FD+LL K + K
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHS----PEELVRLLNDLYTRFDELLDKHG---VYK 53
Query: 285 IKTIGSTYMLASGL 298
+KTIG YM ASGL
Sbjct: 54 VKTIGDAYMAASGL 67
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 95.3 bits (238), Expect = 7e-23
Identities = 28/78 (35%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCKC 488
G++ GPV+AGV+G+++P+Y + +TVN+A+R++S G++ V+E T ++L +G++ +
Sbjct: 100 GIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEE 159
Query: 489 RGQIFVKGK-GTLTTYFV 505
G++ +KGK G + Y +
Sbjct: 160 LGEVELKGKSGPVRVYRL 177
Score = 46.4 bits (111), Expect = 5e-06
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 235 VMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSIEKIKTIGSTYML 294
V+FA I + + E + LLNE FD+++ + KTIG M
Sbjct: 4 VLFADIVGFTALSERLG----PEELVELLNEYFSAFDEIIER---HGGTVDKTIGDAVMA 56
Query: 295 ASGLRPGLEDQP 306
GL ED
Sbjct: 57 VFGLPGAHEDHA 68
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 72.7 bits (179), Expect = 7e-15
Identities = 25/51 (49%), Positives = 41/51 (80%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKIL 479
G++ GPV+AGV+G + P+Y ++ +TVN+ASRM+S G G++QV+E+T +L
Sbjct: 135 GIHTGPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLL 185
Score = 65.7 bits (161), Expect = 2e-12
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 199 LLENILPAHVAQHFLHSSSSSRVTQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLE 258
LL+ +LPA VA+ S + E Y+ + ++F+ I + + +
Sbjct: 9 LLDQLLPASVAEQLKRGGSP------VPAESYDNVTILFSDIVGFTSLCSTS----TPEQ 58
Query: 259 CLRLLNEIICDFDKLLLKPKFSSIEKIKTIGSTYMLASGL 298
+ LLN++ FD+++ + K+KTIG YM+ASGL
Sbjct: 59 VVNLLNDLYSRFDQIIDR---HGGYKVKTIGDAYMVASGL 95
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQ 470
G++ GPV+ GVIG+ +PQYD+W VN+ASRM+S G++
Sbjct: 93 GIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQVL 133
Score = 50.8 bits (122), Expect = 7e-08
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 232 CIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSIEKIKTIGST 291
+ ++FA I + D E LLNE+ FD L+ + S KIKTIG
Sbjct: 1 PVTILFADIVGFTSLAD----ALGPDEGDELLNELAGRFDSLIRR---SGDLKIKTIGDE 53
Query: 292 YMLASGL 298
+M+ SGL
Sbjct: 54 FMVVSGL 60
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 39.1 bits (91), Expect = 0.003
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCKC 488
G++ G V+ G G Y + + VN A+R++S G++ ++E T ++
Sbjct: 140 GIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSG 195
Query: 489 RGQIFVKGKGTLTTYF 504
G +KG +
Sbjct: 196 LGSHRLKGLARPVRVY 211
>gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 296
Score = 31.0 bits (71), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 12/49 (24%)
Query: 159 ILFH-ILDRQMEFTARTDFLWQAK-----LKV------EQDDVETMRGI 195
ILF +DR++E D+LW+ K LKV E + V+ M+ I
Sbjct: 73 ILFEQTMDREIEGKPTADYLWEKKGVVPFLKVDKGLAEEANGVQLMKPI 121
>gnl|CDD|202685 pfam03564, DUF1759, Protein of unknown function (DUF1759). This is
a family of proteins of unknown function. Most of the
members are gag-polyproteins.
Length = 146
Score = 28.9 bits (65), Expect = 3.2
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 205 PAHVAQHFLHSSSSSRVTQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLL- 263
A + H ++++ V + ERY+ V+ S+ + N + LR L
Sbjct: 42 AATLVTHLPITAANYDVAWEALKERYDNPRVIIRSL--LNKLMKLPSTNNDSVSQLRRLY 99
Query: 264 ---NEIICDFDKL 273
NEII ++L
Sbjct: 100 DEANEIIRQLEQL 112
>gnl|CDD|223724 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 30.0 bits (68), Expect = 3.2
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 36 YRFYVSLTVGLLVIVTTYMESSILTVAIVFIFLRVGFLVKLVSMVCVVLLHFVVYSTYME 95
Y +L + + + L F+ L +GF VK + LHF + + E
Sbjct: 181 YAATGTLNFADIALKLSSELDPGL-GIAAFLLLLIGFGVK----AGLFPLHFWLPDAHSE 235
Query: 96 ---------SSILTVAIVFIFLRVGFLV 114
S +L V+ LR+ +LV
Sbjct: 236 APSPVSALLSGVLVKVGVYGILRILYLV 263
>gnl|CDD|217929 pfam04151, PPC, Bacterial pre-peptidase C-terminal domain. This
domain is normally found at the C-terminus of secreted
bacterial peptidases. They are not present in the active
peptidase. It is possible that they fulfill a similar
role to the PKD (pfam00801) domain, which also are found
in this context. Visual analysis suggests that PKD and
PPC are distantly related (personal obs:Bateman A, Yeats
C).
Length = 70
Score = 26.5 bits (59), Expect = 6.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 334 SDANGSASGGEFNSVVSGNYYLRI 357
S G+ F + +G YY+R+
Sbjct: 45 SYNGGNDESISFTAPQAGTYYIRV 68
>gnl|CDD|219993 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a
transmembrane protein required for proteolytic cleavage
of Rim101/PacC transcription factors which are activated
by C terminal proteolytic processing. Rim101/PacC family
proteins play a key role in pH-dependent responses and
PalH has been implicated as a pH sensor.
Length = 346
Score = 28.4 bits (64), Expect = 9.3
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 31/111 (27%)
Query: 90 YSTYME---SSILTVAIVFIFL---------RVGFLVKL-VSMVCVVLLHFVVYSVQNLF 136
YS S V + L R L+KL + + L F+ + + L
Sbjct: 79 YSVVPILFALSGSCVITWMLTLLLFLSPRHKRRPLLLKLATLLSSISLTIFLAKATKELE 138
Query: 137 FPYRYDDL-PYQL------TTWFPILILI-----------ILFHILDRQME 169
Y L +L + + +L LI I+ + RQ E
Sbjct: 139 EQYYEGYLDAAELLHLINNSNAYRVLDLISVFLLQLAQVQIVMRLFSRQKE 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.421
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,962,893
Number of extensions: 2562581
Number of successful extensions: 3424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3362
Number of HSP's successfully gapped: 141
Length of query: 512
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 411
Effective length of database: 6,457,848
Effective search space: 2654175528
Effective search space used: 2654175528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)