RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16759
(512 letters)
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 149 bits (378), Expect = 2e-42
Identities = 58/78 (74%), Positives = 64/78 (82%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCKC 488
G+NHGPVIAGVIGAQKPQYDIW NTVNVASRMDS GV+ ++QVTE+T+ IL GY C C
Sbjct: 129 GINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTC 188
Query: 489 RGQIFVKGKGTLTTYFVK 506
RG I VKGKG L TYFV
Sbjct: 189 RGIINVKGKGDLKTYFVN 206
Score = 128 bits (323), Expect = 2e-34
Identities = 57/87 (65%), Positives = 69/87 (79%)
Query: 222 TQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSS 281
++LYH+ Y+C+ VMFASIP++KEFY E+DVNK+GLECLRLLNEII DFD LL KPKFS
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSG 63
Query: 282 IEKIKTIGSTYMLASGLRPGLEDQPGG 308
+EKIKTIGSTYM A+GL +
Sbjct: 64 VEKIKTIGSTYMAATGLSAIPSQEHAQ 90
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 118 bits (297), Expect = 7e-31
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCKC 488
GL GPV+AGV+G+++ +Y +W + VNVASRM+S VG++QV ++ + L + +
Sbjct: 107 GLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERL-KDDFVLRE 165
Query: 489 RGQIFVKGKGTLTTYFVK 506
RG I VKGKG + T+++
Sbjct: 166 RGHINVKGKGVMRTWYLI 183
Score = 51.5 bits (124), Expect = 9e-08
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 223 QDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSI 282
+++ ++Y+ V+FA I + E + +R L+ + FD+L+ + +
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAP----ADLVRFLDRLYSAFDELVDQ---HGL 53
Query: 283 EKIKTIGSTYMLASGL 298
EKI+ G +YM+ SG+
Sbjct: 54 EKIEVSGDSYMVVSGV 69
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 114 bits (287), Expect = 2e-29
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMAS-----G 483
G++ G V+ GVIG + P+Y ++ NTVN+ SR ++ G G++ V+E T + LM+
Sbjct: 115 GIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQ 174
Query: 484 YDCKCRGQIFVKGKGTLTTYFVK 506
+ + RG + +KGK +
Sbjct: 175 FHLEHRGPVSMKGKKEPMQVWFL 197
Score = 72.4 bits (178), Expect = 1e-14
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 228 ERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSIEKIKT 287
+RY+ + ++F+ I + F ++ + ++ + LLN++ FD L K + K++T
Sbjct: 8 KRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVET 67
Query: 288 IGSTYMLASGL 298
+G YM SGL
Sbjct: 68 VGDKYMTVSGL 78
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 105 bits (265), Expect = 1e-26
Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASG-YDCK 487
G++ GPV+AGV+G + P++ ++ +TVN ASRM+S G G++ ++E L + ++ +
Sbjct: 107 GMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIR 166
Query: 488 CRGQIFVKGKGTLTTYFVK 506
RG I VKGKGT+ TY +
Sbjct: 167 ERGNITVKGKGTMRTYLLS 185
Score = 46.1 bits (110), Expect = 5e-06
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 228 ERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSIEKIKT 287
+ + V+F+ I + E + LE LL+E+ FD + ++ + K++T
Sbjct: 5 QEHPEATVLFSDIVGFTEIASRSSP----LEVXSLLDELYQRFDAAI--EEYPQLYKVET 58
Query: 288 IGSTYMLASGL 298
IG YM+ +
Sbjct: 59 IGDAYMVVCNV 69
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 102 bits (257), Expect = 3e-25
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASG-YDCK 487
GL+ G V AGV+G + P+Y ++ N V +A++ +SC V ++ V+ T ++L +
Sbjct: 111 GLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFT 170
Query: 488 CRGQIFVKGKGTL----TTYFV 505
R + + +F+
Sbjct: 171 PRSREELPPNFPSEIPGICHFL 192
Score = 43.5 bits (103), Expect = 6e-05
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 228 ERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDFDKLLLKPKFSSIEKIKT 287
++++ + ++F+ I + + L+ + +LN + FD+ + + K++T
Sbjct: 10 KKFSNVTMLFSDIVGFTAICSQCSP----LQVITMLNALYTRFDQQCGELD---VYKVET 62
Query: 288 IGSTYMLASGL 298
IG Y +A GL
Sbjct: 63 IGDAYCVAGGL 73
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 98.9 bits (247), Expect = 6e-24
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDC-- 486
G++ G V GV+G +K Q+D+WSN V +A+ M++ G GR+ +T+ T L Y+
Sbjct: 131 GIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYL-NGDYEVEP 189
Query: 487 KCRGQIFVKGKG-TLTTYFVK 506
C G+ K ++ T+ +
Sbjct: 190 GCGGERNAYLKEHSIETFLIL 210
Score = 54.2 bits (131), Expect = 2e-08
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 206 AHVAQHFLHSSSSSRVTQ---DLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRL 262
H A ++ + +Y ++++ + ++FA I + + E +
Sbjct: 5 HHHAMEMKADINAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTA----QELVMT 60
Query: 263 LNEIICDFDKLLLKPKFSSIEKIKTIGSTYMLASGL 298
LNE+ FDKL + + +IK +G Y SGL
Sbjct: 61 LNELFARFDKLAAE---NHCLRIKILGDCYYCVSGL 93
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 80.8 bits (199), Expect = 1e-16
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKIL----MASGY 484
G+ G ++ D + + VNVASR+ G + V + + L A G+
Sbjct: 300 GVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGF 352
Query: 485 DCKCRGQIFVKG-KGTLTTYFVK 506
G ++G +G + + V+
Sbjct: 353 QWSFAGPRRLRGIRGDVRLFRVR 375
Score = 30.7 bits (69), Expect = 1.1
Identities = 17/152 (11%), Positives = 39/152 (25%), Gaps = 18/152 (11%)
Query: 147 QLTTWFPILILIILFHILDRQMEFTARTDFLWQAKLKVEQDDVETMRGINKILLENILPA 206
L + +++ + L + + ++ M + L +++
Sbjct: 140 HAAEAMRYTALEAIMRPGATELDIAKGSQALVSQIVPLLGPMIQDML---FMQLRHMMET 196
Query: 207 HVAQHFLHSSSSSRVTQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEI 266
++ + V FA + + + + E L +
Sbjct: 197 EAVNAGERAAGKPL-------PGARQVTVAFADLVGFTQLGEVVSAE----ELGHLAGRL 245
Query: 267 ICDFDKLLLKPKFSSIEKIKTIGSTYMLASGL 298
L + IKTIG ML
Sbjct: 246 AGLARDLTAP----PVWFIKTIGDAVMLVCPD 273
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 67.9 bits (166), Expect = 4e-13
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMAS---GYD 485
G++ G YD + T N+A+R +S G++ +T L A D
Sbjct: 137 GIHTGLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQID 195
Query: 486 CKCRGQIFVKGK-GTLTTYFV 505
G + ++G + Y +
Sbjct: 196 VTALGDVALRGVSDPVKMYQL 216
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 55.4 bits (134), Expect = 4e-09
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCKC 488
G++ G V D+ V++ +R+ + + V+ I+ S +
Sbjct: 101 GIHAGEVEVRDASHG---TDVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGSRHRFAE 157
Query: 489 RGQIFVKGK-GTLTTYFV 505
RG+ +KG G +
Sbjct: 158 RGEQELKGVPGRWRLCVL 175
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 53.0 bits (128), Expect = 4e-08
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 429 GLNHGPVIAGVIGA-QKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCK 487
G+N G V+ G IG+ ++ +Y + VN+ R++S G++ ++ T +
Sbjct: 115 GINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIESYTTGGQIFISSTTLE-AAGDRVHVN 173
Query: 488 CRGQIFVKGK 497
+ KG
Sbjct: 174 GNRTVQPKGV 183
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 50.2 bits (121), Expect = 2e-07
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 429 GLNHGPVIAGVIGA-QKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCK 487
G+N G G GA + Y I VN+ASR++S G + ++ +T L+ C+
Sbjct: 113 GINTGYCTVGNFGADTRMDYTIIGREVNLASRLESASEAGEILISHETYS-LIKDVIMCR 171
Query: 488 CRGQIFVKGK 497
+GQI VKG
Sbjct: 172 DKGQIAVKGF 181
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 48.0 bits (115), Expect = 2e-06
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 429 GLNHGPVIAGVIGA-QKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMASGYDCK 487
G++ G + G+ G+ ++ + +VN+A+R+ + V+ A+ +
Sbjct: 136 GIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQ--YVPDEEII 193
Query: 488 CRGQIFVKGK 497
R + +KG
Sbjct: 194 KREFLELKGI 203
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 41.1 bits (97), Expect = 3e-04
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 429 GLNHGPVIAGVIGAQKPQYDIWSNTVNVASRMDSCGVVGRLQVTEDTAKILMAS-GYDCK 487
G+N G ++ DI+ + VNVA+R+++ G + V++ +I
Sbjct: 99 GINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFT 151
Query: 488 CRGQIFVKGK 497
G VK
Sbjct: 152 DLGLQKVKNI 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 58/332 (17%), Positives = 94/332 (28%), Gaps = 119/332 (35%)
Query: 156 ILI---ILFHILDRQMEFTARTDFLWQAKLKVEQDDVETMRGINKILLENILPAHVAQHF 212
+L+ F Q +F L + DD E PA + F
Sbjct: 20 LLVPTASFFIASQLQEQFNKI---LPEPTEGFAADD------------EPTTPAELVGKF 64
Query: 213 LHSSSSSRVTQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRL-LNEIICDFD 271
L Y E Q + L L L E +
Sbjct: 65 LG----------------------------YVSSLVEPSKVGQFDQVLNLCLTEFENCY- 95
Query: 272 KL-----------LLKPKFSSIEKIKTIGSTYMLASGL--RPGLEDQPGGSNVFHLILWI 318
L LL+ +++ K K + Y+ A + RP D+ S +F
Sbjct: 96 -LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP--FDKKSNSALF------ 146
Query: 319 PSRTGLSESDTDYITSDANGSAS-----GGEFNSVVSGN---YY--LRI-----GIFVTT 363
+ G+A GG+ GN Y+ LR + V
Sbjct: 147 --------------RAVGEGNAQLVAIFGGQ------GNTDDYFEELRDLYQTYHVLVGD 186
Query: 364 VVIVAVDV-QELQDVEVLWQALNETFTHSSNVSTVLFYRNRTSEMD----INMSL---GV 415
++ + + EL + + + FT N+ L + T + D I +S GV
Sbjct: 187 LIKFSAETLSELIRTTLDAEKV---FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 416 SDIFSSCLICVLTGLNHG---PVIAGVIGAQK 444
+ + L G G + G G +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Score = 36.6 bits (84), Expect = 0.023
Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 102/280 (36%)
Query: 168 MEF-----TARTDFLWQAKLKVEQDDVETMR--G--INKILLENILPAHVAQHFLHSSSS 218
M+ A+ +W + D G I I++ N P ++ HF
Sbjct: 1633 MDLYKTSKAAQD--VW------NRADNHFKDTYGFSILDIVINN--PVNLTIHFGGEKG- 1681
Query: 219 SRVTQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGLECLRLLNEIICDF-----DKL 273
+ + E Y ++F +I D + + + +NE + L
Sbjct: 1682 ----KRIR-ENY--SAMIFETIV---------DGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 274 LLKPKF----------SSIEKIKTIG----STYM----------LASG------------ 297
L +F ++ E +K+ G LAS
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 298 --LRPGL-------EDQPGGSNVFHLILWIPSR--TGLSESDTDYITSDANGSASGGEFN 346
R G+ D+ G SN + +I P R S+ Y+ G
Sbjct: 1786 VFYR-GMTMQVAVPRDELGRSN-YGMIAINPGRVAASFSQEALQYVVERV--GKRTGWLV 1841
Query: 347 SVVSGNYYLRIGIFVTTVVIVAVDVQELQDVEVLWQALNE 386
+V NY + + A +L+ ++ + LN
Sbjct: 1842 EIV--NYNVE-----NQQYVAA---GDLRALDTVTNVLNF 1871
Score = 33.1 bits (75), Expect = 0.25
Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 84/233 (36%)
Query: 293 MLASGLRP-GLEDQPGGSNVFHLILWIPSR-----TGLSESDTDYITSDANGSASGGEFN 346
M A RP L GS + H++L +P+ + L E + G A+ E
Sbjct: 1 MDAYSTRPLTLSH---GS-LEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 347 SVVSGNYYLR-IGIFVTTVVIVAVDVQEL-QDVEVLWQALNETFTHSSNVSTVLFYRNRT 404
+ + +G +V+++V + ++ Q +VL L E F + +
Sbjct: 56 TPAE--LVGKFLG-YVSSLV----EPSKVGQFDQVLNLCLTE-FENC-------Y----- 95
Query: 405 SEMDINMSLGVSDIFSSCLICVLTGLNHGPVIA--GVIGAQKPQYDIWSNTVNVASRMDS 462
L +DI + L L N ++ +I Y + +
Sbjct: 96 --------LEGNDIHA--LAAKLLQENDTTLVKTKELIKN----Y------------ITA 129
Query: 463 CGVVGR----------LQ-VTEDTAKILMASGYDCKCRGQIFVKGKGTLTTYF 504
+ R + V E A+++ G GQ G YF
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG------GQ------GNTDDYF 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 48/261 (18%), Positives = 71/261 (27%), Gaps = 86/261 (32%)
Query: 140 RYDDLPYQLTTWFPILILII--LFHILDRQMEFTARTDFLWQAKLKVEQDDVETMRGINK 197
R DLP ++ T P + II + A D W+ V D + T I +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR------DGLATWDN-WK---HVNCDKLTT---IIE 360
Query: 198 ILLENILPAHVAQHFLHSSSSSRVTQDLYHERYNCIGVMF---ASIP--------NYKEF 246
L + PA + F L +F A IP
Sbjct: 361 SSLNVLEPAEYRKMF----------DRL---------SVFPPSAHIPTILLSLIWFDVIK 401
Query: 247 YD-ENDVNKQGLECLRLLNEIICDFDK---------LLLKPKFSSIEKI-KTIGSTYMLA 295
D VNK L L+ + + L LK K + + ++I Y +
Sbjct: 402 SDVMVVVNK--LHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 296 SGLRPGLEDQPGGSNVF------HLILWIPSRTGLSESDT-------DY-------ITSD 335
P F HL E T D+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 336 ANGSASGGEFNSVVSGNYYLR 356
+ASG N++ +Y
Sbjct: 512 TAWNASGSILNTLQQLKFYKP 532
Score = 36.4 bits (83), Expect = 0.023
Identities = 43/297 (14%), Positives = 88/297 (29%), Gaps = 85/297 (28%)
Query: 116 LVSMVC-----VVLLHFVVY--SVQNLFFPYRYDDLPYQLTTWFPILILIILFHILDRQM 168
+ VC + F ++ +++N P + + L L + +D
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQK---------LLYQIDP-- 211
Query: 169 EFTARTDFLWQAKLKVEQDDVETMRGINK-------ILLENILPAHVAQHFLHSSSSSRV 221
+T+R+D KL++ E R + ++L N+ A F S ++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KI 268
Query: 222 ---TQDLYHERYNCIGVMFASIPNYKEFYDENDVNKQGL---ECLRLLNEII-CDFDKLL 274
T+ V + + L E LL + + C L
Sbjct: 269 LLTTRF--------KQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDL- 318
Query: 275 LKPKFSSIEKIKT----IGSTYMLASGLRPGLEDQPGGSNVFHLILWIPSRTGLSESDTD 330
P+ E + T + ++A +R L W + + T
Sbjct: 319 --PR----EVLTTNPRRLS---IIAESIRD------------GLATWDNWKHVNCDKLTT 357
Query: 331 YITSDANGSASGGEFNSVVSGNYYLRIGIFVTTVVIVAVDVQELQDVEVLWQALNET 387
I S N + R+ +F + I + ++W + ++
Sbjct: 358 IIESSLN------VLEPAEYRKMFDRLSVFPPSAHI------PTILLSLIWFDVIKS 402
Score = 33.3 bits (75), Expect = 0.23
Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 73/314 (23%)
Query: 4 RNSNNTDDLNPVFLWFKDGAHELGFRHFPDPQYRFYVSLTVGLLVIVTTYMESSILTVAI 63
R TD L+ + H LL+ L +
Sbjct: 273 RFKQVTDFLSA------ATTTHISLDHHSMT---LTPDEVKSLLLKYLD-CRPQDLPREV 322
Query: 64 VFIFLRVGFLVKLVSMVCVVLLHFVVYSTYMESSILTVAIVFIFLRVGF--LVKLVSMVC 121
+ R +S++ + + + V L ++
Sbjct: 323 LTTNPRR------LSIIAESIRDGLATWDN-------------WKHVNCDKLTTIIES-S 362
Query: 122 VVLLHFVVYSVQNLF-----FPYRYDDLPYQLTTWFPILILIILFHILDRQ--MEFTART 174
+ +L Y + +F FP P ++L +++ + + M
Sbjct: 363 LNVLEPAEY--RKMFDRLSVFP---PS------AHIPTILLSLIWFDVIKSDVMVV---V 408
Query: 175 DFLWQAKLKVEQDDVETMRGINKILLENILPAHVAQHF-LHSSSSSRVTQDLYHERYNCI 233
+ L + L VE+ E+ I I LE L + + LH S V + ++
Sbjct: 409 NKLHKYSL-VEKQPKESTISIPSIYLE--LKVKLENEYALHRSI---VDHYNIPKTFDSD 462
Query: 234 GVMFASIPNYKEFYDENDVNKQG--LECLRLLNEIICDFDKLLLKPKFSSIE-KIKTIGS 290
++ + Y FY + G L+ + E + F + L +F +E KI+ +
Sbjct: 463 DLIPPYLDQY--FY-----SHIGHHLKNIE-HPERMTLFRMVFLDFRF--LEQKIRHDST 512
Query: 291 TYMLASGLRPGLED 304
+ + + L+
Sbjct: 513 AWNASGSILNTLQQ 526
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding
domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha
magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana
tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A*
1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Length = 550
Score = 28.2 bits (62), Expect = 7.4
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 1 MIYRNSNNTDDLNPVFLWFK------DGAHELGFRHFPDPQYRFYVSLTVGLLVIVTTYM 54
IY ++N +DL L F+ F F D +F SL +L ++ Y
Sbjct: 95 QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYE 154
Query: 55 ES-------SILTVAIVF 65
S IL A+ F
Sbjct: 155 ASHVRTHADDILEDALAF 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.421
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,755,072
Number of extensions: 465361
Number of successful extensions: 1130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1108
Number of HSP's successfully gapped: 35
Length of query: 512
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 414
Effective length of database: 3,965,535
Effective search space: 1641731490
Effective search space used: 1641731490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)