BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1676
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/342 (81%), Positives = 306/342 (89%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M+K+ +NRR+ DLIAAK YFYHSRV EL N+L+ +RSFL++RLR ATLRNDFEGQAVLI
Sbjct: 155 MAKVVGQNRRSLDLIAAKSYFYHSRVAELNNDLESIRSFLHSRLRTATLRNDFEGQAVLI 214
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
NCLLRNYLHY+LYDQADKLV KS FPE ASNNE ARF +YLGRIKA +LEYS AHK LVQ
Sbjct: 215 NCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQ 274
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AAVGFRQT QKL +VVELLLGDIP+R++FRQA LRR+L PYFQLTQAVRMG
Sbjct: 275 ALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGN 334
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
LQ+F EVL +G QFR D+TF LI+RLRHNVIKTAIRSIG +YSRI+P IA KLGL+SP
Sbjct: 335 LQRFGEVLVNFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSP 394
Query: 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSV 300
EDAEFI+AKAIRDGVIEATLD EKGYM+SKES DIY T EPQLAFHQRI+FCLDLHNQSV
Sbjct: 395 EDAEFIVAKAIRDGVIEATLDPEKGYMRSKESTDIYSTREPQLAFHQRISFCLDLHNQSV 454
Query: 301 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
KAMRYPPKSYGK+LESAEERREREQQDLELAKEMAEEDDDGF
Sbjct: 455 KAMRYPPKSYGKELESAEERREREQQDLELAKEMAEEDDDGF 496
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 277/342 (80%), Positives = 306/342 (89%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M+KI +NRR+ DLIAAKCYFYHSRV EL N+L+ +RSFL++RLR ATLRNDFEGQAVLI
Sbjct: 159 MAKIVGQNRRSLDLIAAKCYFYHSRVSELNNDLESIRSFLHSRLRTATLRNDFEGQAVLI 218
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
NCLLRNYLHY+LYDQADKLV KS FPE ASNNE ARF +YLGRIKA +LEYS AHK LVQ
Sbjct: 219 NCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQ 278
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AAVGFRQT QKL +VVELLLGDIP+R++FRQA LRR+L PYFQLTQAVRMG
Sbjct: 279 ALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGN 338
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
LQ+F EVL +G QFR D+TF LI+RLRHNVIKTAIRSIG +YSRI+P IA KLGL+SP
Sbjct: 339 LQRFGEVLENFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSP 398
Query: 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSV 300
EDAEFI+AKAIRDGVI+ATLD EKGYM++KES DIY T EPQLAFHQRI+FCLDLHNQSV
Sbjct: 399 EDAEFIVAKAIRDGVIDATLDPEKGYMRTKESTDIYSTREPQLAFHQRISFCLDLHNQSV 458
Query: 301 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
KAMRYPPKSYGK+LESAEERREREQQDLELAKEMAEEDDD F
Sbjct: 459 KAMRYPPKSYGKELESAEERREREQQDLELAKEMAEEDDDDF 500
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 533 bits (1373), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/342 (76%), Positives = 304/342 (88%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M+KI+ +NRRT DLI AK YFY SRV EL N+L+ +RSFL+ARLR ATLRNDFEGQAVLI
Sbjct: 153 MAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTATLRNDFEGQAVLI 212
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
NCLLRNYLHY LYDQADKLVKKS +PE+ASNNEWARF +YLGRIKA +LEYS AHK+LVQ
Sbjct: 213 NCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFLYYLGRIKAAKLEYSDAHKHLVQ 272
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRK+PQ AA+GFRQT QKL +VVELLLG+IP+R +FRQA LR++L YFQLTQAVR+G
Sbjct: 273 ALRKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAVRLGN 332
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L++F +V++ YG +F+ D+TF LI+RLRHNVIKTAIRSIG SYSRI+P IA++L L+S
Sbjct: 333 LKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSA 392
Query: 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSV 300
EDAEFI++KAIRDGVIEATLD + +M+SKES DIY T EPQLAFH+RI+FCL+LHNQSV
Sbjct: 393 EDAEFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQSV 452
Query: 301 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAE+D+DGF
Sbjct: 453 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEDDEDGF 494
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/343 (70%), Positives = 286/343 (83%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M KI+++NRR DL+AAKCY+YH+RV+E + LD VRSFL+ARLR ATLR+D +GQA L+
Sbjct: 188 MQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLL 247
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHY+LYDQA+KLV KS FPE A+NNEWAR+ +Y GRIKA++LEYS A + +
Sbjct: 248 NLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTN 307
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AVGF+QT KL +VVELLLG+IPDR FRQ L+R+L PYF LTQAVR G
Sbjct: 308 ALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGN 367
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L KFN+VL +G +F+TD T+ LI+RLRHNVIKT +R I SYSRI+ IA+KL L+SP
Sbjct: 368 LAKFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSP 427
Query: 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSV 300
EDAEFI+AKAIRDGVIEA+++ EKGY+QSKE DIY T EPQLAFHQRI+FCLD+HN SV
Sbjct: 428 EDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSV 487
Query: 301 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGFP 343
KAMR+PPKSY KDLESAEERREREQQDLE AKEMAE+DDD FP
Sbjct: 488 KAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 530
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/343 (69%), Positives = 285/343 (83%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M KI+++NRR DL+AAKCY+YH+RV+E + LD VRSFL+ARLR ATLR+D +GQA L+
Sbjct: 192 MQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDTDGQATLL 251
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHY+LYDQA+KLV KS FPE A+NNEWAR+ +Y GRIKA++LEYS A + +
Sbjct: 252 NLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTN 311
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AVGF+QT KL +VVELLLG+IPDR FRQ L+R+L PYF LTQAVR G
Sbjct: 312 ALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGN 371
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L KFN+VL +G +F+ D T+ LI+RLRHNVIKT +R I SYSRI+ IA+KL L+SP
Sbjct: 372 LAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSP 431
Query: 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSV 300
EDAEFI+AKAIRDGVIEA+++ EKGY+QSKE DIY T EPQLAFHQRI+FCLD+HN SV
Sbjct: 432 EDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSV 491
Query: 301 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGFP 343
KAMR+PPKSY KDLESAEERREREQQDLE AKEMAE+DDD FP
Sbjct: 492 KAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/343 (69%), Positives = 285/343 (83%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M KI+++NRR DL+AAKCY+YH+RV+E + LD VRSFL+ARLR ATLR+D +GQA L+
Sbjct: 192 MQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLL 251
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHY+LYDQA+KLV KS FPE A+NNEWAR+ +Y GRIKA++LEYS A + +
Sbjct: 252 NLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTN 311
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AVGF+QT KL +VVELLLG+IPDR FRQ L+R+L PYF LTQAVR G
Sbjct: 312 ALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGN 371
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L KFN+VL +G +F+ D T+ LI+RLRHNVIKT +R I SYSRI+ IA+KL L+SP
Sbjct: 372 LAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSP 431
Query: 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSV 300
EDAEFI+AKAIRDGVIEA+++ EKGY+QSKE DIY T EPQLAFHQRI+FCLD+HN SV
Sbjct: 432 EDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSV 491
Query: 301 KAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGFP 343
KAMR+PPKSY KDLESAEERREREQQDLE AKEMAE+DDD FP
Sbjct: 492 KAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 343 bits (881), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 240/345 (69%), Gaps = 8/345 (2%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ S +RRT D IAAK YFY+ E N + R+ L + R A+LR+D E QA+++
Sbjct: 154 IARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVL 213
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
LLRNY+ +NLYDQAD+LV K++F NASNN R+ +YLGRI+A++L+Y+TAH++LV
Sbjct: 214 TLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVS 273
Query: 121 ALRKAPQTA-AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMG 179
A+RKAP T AV F + KL +VV+LL+G+IP+R+IFRQ L + L PY +++QAVR+G
Sbjct: 274 AIRKAPNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIG 333
Query: 180 ELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLES 239
+L F + L+ Y +FR D + LI RLRH VIKT +R I SYSRI+ + KLGL+S
Sbjct: 334 DLCAFTDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDS 393
Query: 240 PEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQS 299
E AE+I+AK IRDGVI+A++D +M S E+ DIY T +PQ AFH+RI FCL LHN S
Sbjct: 394 EESAEYIVAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDS 453
Query: 300 VKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEED-DDGFP 343
+K+MRYP ++ +LE EE R R + KEMAE D DD P
Sbjct: 454 IKSMRYPMDAHKSELEGVEEARRR------MDKEMAEADLDDDEP 492
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 342 bits (876), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/345 (54%), Positives = 263/345 (76%), Gaps = 5/345 (1%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ + NRRT D++A++ YFY+S +ELT +L ++R +L A RIATLR+D GQ L+
Sbjct: 146 IARLKTVNRRTVDVLASRLYFYYSLCYELTGDLAEIRGYLLALHRIATLRHDELGQETLL 205
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN +++R+ FYLG+I+ ++LEY+ A ++L+Q
Sbjct: 206 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQ 265
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAPQ AA+GFR K A++V LLLG+IP+R +F Q + +AL PYF+LT AVR+G+
Sbjct: 266 AARKAPQ-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGD 324
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L+ F +V + + F +D T LI+RLRHNVI+T +R+I SYSRI+ +A+KL L+SP
Sbjct: 325 LELFRKVAEKFSSTFSSDGTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSP 384
Query: 241 E---DAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHN 297
DAE I++KAIRDG I+ATLD G+M SKE+ DIY T EPQ+AF+ RIAFCL++HN
Sbjct: 385 NPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHN 444
Query: 298 QSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
++V+A+R+PP S+ K+ ESAE+RRER+QQ+ ELAK +AEEDDD F
Sbjct: 445 EAVRALRFPPNSH-KEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 334 bits (856), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 184/345 (53%), Positives = 251/345 (72%), Gaps = 5/345 (1%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ + NRRT D+IA++ YFY+S +E T +L ++R L A ATLR+D GQ L+
Sbjct: 146 IARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLAEIRGTLLALHHSATLRHDELGQETLL 205
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN ++ R+ FYLG+I+ ++LEY+ A ++L+Q
Sbjct: 206 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 265
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAP AA+GFR K A++V LLLG+IP+R IF Q + +AL PYF+LT AVR+G+
Sbjct: 266 AARKAP-IAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGD 324
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L+ F V + + F D T LI+RLRHNVI+T +R+I SYSRI+ +A+KL L S
Sbjct: 325 LELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSE 384
Query: 241 E---DAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHN 297
DAE I+AKAIRDG I+AT+D + G M SKE+ DIY T EPQ AF+ RIAFCL++HN
Sbjct: 385 NPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHN 444
Query: 298 QSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
++V+A+R+PP ++ K+ ES E+RRER+QQ+ ELAK MAEEDDD F
Sbjct: 445 EAVRALRFPPNTH-KEKESDEKRRERKQQEEELAKHMAEEDDDDF 488
>sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis
elegans GN=rpn-3 PE=1 SV=1
Length = 504
Score = 330 bits (847), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 178/346 (51%), Positives = 234/346 (67%), Gaps = 5/346 (1%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++ I + +RRT D +AAK ++ ++E L + FLN+RLR ATLRN E QAVLI
Sbjct: 160 LTSIYNFDRRTLDGLAAKTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLI 219
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
LLR YL Y A LV K AFP+NASNN+ AR+ +Y GRIKA++L+Y++A +Q
Sbjct: 220 CWLLRCYLINRQYQSAAHLVSKVAFPDNASNNDLARYMYYQGRIKALQLDYNSAAGYFLQ 279
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAPQ A+GF+Q QK VV+ LL G+IPDR +FRQ + R+ L+ Y L++ VR G+
Sbjct: 280 AQRKAPQEGAIGFKQAVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGD 339
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
+ +FN L + QF D T LI+RLR NVIKTAI+ I +YSRI IA+KL + +
Sbjct: 340 VARFNHNLEQFKTQFEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITNE 399
Query: 241 EDAEFIIAKAIRDGVIEA--TLDREKG--YMQSKESADIYCTVEPQLAFHQRIAFCLDLH 296
+ E+I+AKAI DG I+A T D G YMQS E+ADIY T EPQ F RI +CL+LH
Sbjct: 400 TETEYIVAKAIADGAIDAVITSDVRDGPRYMQSSETADIYRTSEPQAHFDTRIRYCLELH 459
Query: 297 NQSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
NQ+VKA+RYPPK +E+ E+ REREQQ+LE AKE+A+EDDD F
Sbjct: 460 NQAVKALRYPPKK-KIAVETIEQAREREQQELEFAKELADEDDDDF 504
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 327 bits (839), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 185/345 (53%), Positives = 253/345 (73%), Gaps = 5/345 (1%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ + NRRT +++A++ YFY+S +ELT +L ++R L A RIATLR+D GQ L+
Sbjct: 147 IARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 206
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN ++ R+ FYLG+I+ ++LEY+ A ++ +Q
Sbjct: 207 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQ 266
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAP AA+GFR K AV+V LLLG+IP+R +F Q + +AL PYF LT AVR+G+
Sbjct: 267 AARKAP-VAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGD 325
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L+ F V + + F D T LI+RLRHNVI+T +R+I SYSRI+ +A KL L+SP
Sbjct: 326 LELFRXVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSP 385
Query: 241 E---DAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHN 297
DAE I++KAIRDG I+AT+D G+M SKE+ DIY T EPQ AF+ RIAFCL++HN
Sbjct: 386 NPVADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHN 445
Query: 298 QSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
++V+A+R+P S+ KD ESAE+RRER+QQ+ ELAK +AEEDDD F
Sbjct: 446 EAVRALRFPANSH-KDKESAEKRRERQQQEQELAKHIAEEDDDEF 489
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 325 bits (834), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/345 (51%), Positives = 247/345 (71%), Gaps = 5/345 (1%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ S NRRT D+IA+K YFY+S +ELTN+L ++RS L A ATLR+D GQ L+
Sbjct: 145 IARLKSVNRRTVDVIASKLYFYYSLSYELTNDLAEIRSTLLALHHSATLRHDELGQETLL 204
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN ++ R+ FYLG+I+ ++LEY+ A ++L+Q
Sbjct: 205 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 264
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAP A++GFR K A++V LLLG+IP+R IF Q + + L PYF+LT AVR+G+
Sbjct: 265 AARKAP-VASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGD 323
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240
L+ F ++ + F D T LI+RLRHNVI+T +R+I SYSRI+ +A+KL L S
Sbjct: 324 LELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSA 383
Query: 241 E---DAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHN 297
DAE I+AKAIRDG I+AT+D + G M SKE+ DIY T EPQ AF+ RIAFCL++HN
Sbjct: 384 NPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHN 443
Query: 298 QSVKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEEDDDGF 342
++V+A+R+PP ++ + + R ++Q++ ELAK MAEEDDD F
Sbjct: 444 EAVRALRFPPNTHREKESEEKRREMKQQEE-ELAKYMAEEDDDDF 487
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 323 bits (829), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 166/338 (49%), Positives = 232/338 (68%), Gaps = 11/338 (3%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M + S R T +++K +FY+S +E+TNNL +VRS L + LR ATLR++ EGQA +I
Sbjct: 160 METVQSNTRITLYPLSSKIFFYYSLSYEMTNNLHEVRSTLLSALRTATLRHNDEGQATII 219
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYL YNL++QADKL+ + FPE+AS+N++AR+ +Y GRI+A++LEY+ + K L Q
Sbjct: 220 NLLLRNYLEYNLFEQADKLLANTQFPESASSNQFARYFYYQGRIRAIQLEYAESFKFLTQ 279
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A+RKAPQ A GFR+T KL +V+LL+G+IP+R F Q L+ AL PYF LT+AVR+G+
Sbjct: 280 AIRKAPQNTAGGFRRTVYKLLSIVQLLMGEIPERNTFSQKQLKIALKPYFHLTEAVRVGD 339
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLE-S 239
L FN+ L + F++D TF L+ RLR NVIK ++ + +YSRI+ I KL + +
Sbjct: 340 LGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSRISFNDICTKLKFDGT 399
Query: 240 PEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQS 299
+D FIIAK I+DGVI+AT++ E GY+QS+E+ D Y T EP AF RI CL +HN S
Sbjct: 400 TQDIMFIIAKTIKDGVIDATINYEGGYLQSRENIDAYSTQEPLHAFSNRIDICLKIHNDS 459
Query: 300 VKAMRYPPKSYGKDLESAEERREREQQDLELAKEMAEE 337
+KAMR+ P DL AE ++ E+AK + EE
Sbjct: 460 LKAMRFHP-----DLNKAE-----TEKIAEVAKTIKEE 487
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 219/351 (62%), Gaps = 16/351 (4%)
Query: 8 NRRTSDLIAAKCYFYHSRVHEL---------TNNLDKV-RSFLNARLRIATLRNDFEGQA 57
N R+ +LI AK +FY HE ++N + + RS + L+IA+L++D E +A
Sbjct: 172 NLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKA 231
Query: 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPE-NASNNEWARFHFYLGRIKAVRLEYSTAHK 116
+LIN +LR++L+ D A + K +P + S++ AR+ FYL +I A++L+YSTA++
Sbjct: 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANE 291
Query: 117 NLVQALRKAPQTA-AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQA 175
++ A+RKAP + ++GF Q + KL ++LL+GDIP+ F Q+ ++++L PY+ LT+A
Sbjct: 292 YIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKA 351
Query: 176 VRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKL 235
V++G+L+KF +T Y D T++L +RLR NVIKT IR I +Y +I+ I KL
Sbjct: 352 VKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL 411
Query: 236 GLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDL 295
L+S + E+++++AIRDGVIEA ++ E G++++ E +IY + +PQ F +RI F L
Sbjct: 412 NLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQL 471
Query: 296 HNQSVKAMRYPPKSYGKDLESAEE-RREREQQDLELAKEM---AEEDDDGF 342
H++ + +MRYP + E +E + + D +L +M ++ DD GF
Sbjct: 472 HDEYLVSMRYPEDKKTQQNEKSENGENDDDTLDGDLMDDMSDISDLDDLGF 522
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 38/264 (14%)
Query: 57 AVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHK 116
+V+ NCLL + ++ + D + + +E AR+++Y G I V +Y +A K
Sbjct: 136 SVITNCLLDMLIGNKIFQRIDNSI--------VTTSEQARYNYYNGIIFMVEGDYESALK 187
Query: 117 NL-VQALRKAPQTAAVGFRQTTQKLAVVVELLLGD--IPDRQIFRQAVLRRALSPYFQLT 173
+ + +G +K ++ LL D IP + +L YF+L
Sbjct: 188 CFHTCVILSTNRDLVLG----AEKRVILCMLLSSDYSIP-------YPCKPSLRIYFKLA 236
Query: 174 QAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAE 233
AV+ +++KF E L + ++ + + + RL NVI+ IR I YSRI+ IA
Sbjct: 237 SAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYSRISYEDIAH 296
Query: 234 KLGLESPEDAEFIIAKAIRDGVIEATLDREKGYM--QSKESADIYCTVEPQLAFHQRIAF 291
LG+ S E E+++ + IR G+I+ + Y + K DI +
Sbjct: 297 ILGINSGE-VEYLVKRTIRKGLIKGKVADGIFYSLREDKSKTDIGIGIRD---------- 345
Query: 292 CLDLHNQSVKAMRYP---PKSYGK 312
C+ L N + MRYP P Y K
Sbjct: 346 CIQLANYIQEHMRYPAIEPLCYEK 369
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 92/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + +++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 92/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G + + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + ++T + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + ++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + ++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + ++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + ++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=pcid2 PE=3 SV=1
Length = 430
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 59 LINCLLRNYLHYNLYDQADKLVK---KSAFP--ENASNNEWARFHFYLGRIKAVRLEYST 113
++N L + Y N L+K FP E+ N+ + F+ GR+ +Y
Sbjct: 202 VVNQLFQIYFKINNLKLCKNLIKTMESPGFPTLESYPLNQVITYRFFNGRLSVFNGQYKK 261
Query: 114 AHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLT 173
A + L+ A K P ++ ++ V ++L P + + + L+ + +
Sbjct: 262 AQEELLYAFNKCPND-SIKNKRLILLFLVPMQLEQCKFPKKSLLE----KFKLTQFIDIV 316
Query: 174 QAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLR 208
Q+++ G +++FNE L+T+ N F + + ++ +L+
Sbjct: 317 QSIKSGNIKQFNECLSTHQNFFISKGIYLILEKLK 351
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/211 (18%), Positives = 92/211 (43%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + ++ +K +V +LLG +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + + ++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVCFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +KAM
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAM 393
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 125/316 (39%), Gaps = 37/316 (11%)
Query: 9 RRTSDLIAAKCYFYHSRVHELTNNL-----------------DKVRSFLNARLRIATLRN 51
R +D A C H+LTN L DK++ +NA ++ ++
Sbjct: 94 RYATDTFAGLC-------HQLTNALVERKQPLRGICVIRQAIDKMQ--MNAN-QLTSIHG 143
Query: 52 DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEY 111
D ++L C + L Y D D + A+ + +++Y G I +
Sbjct: 144 DLCQLSLLAKCF-KPALAYLDVDMMDICKENGAYDAKP----FLCYYYYGGMIYTGLKNF 198
Query: 112 STAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSP--- 168
A QA+ + + +K +V +L G + + V+ R + P
Sbjct: 199 ERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQLPKYTSQVVGRFIKPLSN 258
Query: 169 -YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
Y +L Q + +++ + F D L+ + ++ K I+ + ++ ++
Sbjct: 259 AYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLS 318
Query: 228 PTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQ 287
+A ++ L ++AE + I DG I A+++++ G + +S + Y Q
Sbjct: 319 LQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCFHDSPEKYNNPAMLHNIDQ 378
Query: 288 RIAFCLDLHNQSVKAM 303
+ C+DL ++ +KAM
Sbjct: 379 EMLRCIDLDDR-LKAM 393
>sp|A7SPX9|EIF3M_NEMVE Eukaryotic translation initiation factor 3 subunit M
OS=Nematostella vectensis GN=v1g192238 PE=3 SV=1
Length = 379
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 168 PYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKT---AIRSIGASYS 224
P +QL Q G++Q + + + TD+ + L N+ K + SIG
Sbjct: 238 PIYQLLQIFVSGDVQDYKKFYDS-----NTDFINSIGLSHEMNLKKMRVLTLMSIGKETD 292
Query: 225 RITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDR 262
I+ +A KLG+ S E +F+I +AI+ G+++A LD+
Sbjct: 293 EISYEDLATKLGISSDEIEQFLI-EAIQTGLVKARLDQ 329
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 53/114 (46%)
Query: 167 SPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRI 226
PY +L G++ + ++ +F D L+ + ++ K I + Y +
Sbjct: 258 GPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYKRNILRLTQKYLTL 317
Query: 227 TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVE 280
+ IA + L + ++AE + + I+DG I A ++++ G ++ E + Y + E
Sbjct: 318 SLQDIANMVQLGNAKEAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQYKSSE 371
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/211 (17%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI 156
+++Y G I + A QA+ + + +K +V +L G +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQLPK 243
Query: 157 FRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVI 212
+ ++ R + P Y +L Q + ++ + F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLSSLY 303
Query: 213 KTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272
K I+ + ++ ++ +A ++ L P++AE + I DG I A+++++ G + ++
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQKDGMVCFHDN 363
Query: 273 ADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ Y Q + C++L ++ +K+M
Sbjct: 364 PEKYNNPAMLHKIDQEMLKCIEL-DEKLKSM 393
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALR------KAPQTAAVGFRQTTQKLAVVVELLL-G 149
+++Y G I T KN +AL P A K ++V L+L G
Sbjct: 184 YYYYGGMIY-------TGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHG 236
Query: 150 DIPDRQIFRQAVLRRALSP----YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLIL 205
+ + ++ R + P Y +L Q + +++ + F D L+
Sbjct: 237 KVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVK 296
Query: 206 RLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265
+ ++ K I+ + ++ ++ +A ++ L ++AE + I DG I A+++++ G
Sbjct: 297 QCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDG 356
Query: 266 YMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSVKAM 303
+ ++ + Y Q + C+DL ++ +KAM
Sbjct: 357 MVCFHDNPEKYNNPAMLHNIDQEMLRCIDLDDR-LKAM 393
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 77/177 (43%), Gaps = 5/177 (2%)
Query: 102 GRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIP--DRQIFRQ 159
G++ + A + +A R + + Q + L + L+ DI D Q +
Sbjct: 245 GKMHMSEENWKEAQSDFFEAFRNYDEAGDLRRIQVLKYLLLTTMLMKSDINPFDSQEMKP 304
Query: 160 AVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSI 219
+ +L A + ++ ++ +VL + + + I + N+ + +
Sbjct: 305 YRNDPRIFAMTELVDAYQRDDIYRYEDVLQKNTDLLADPFIAENIDEVTRNMRTKGVVKL 364
Query: 220 GASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGY--MQSKESAD 274
A Y+R+ + +AE+L + PE + I++ I DG ++ +D KG ++S+E AD
Sbjct: 365 IAPYTRMRISWLAERLRITEPEVMD-ILSFLIVDGRVKGRIDEHKGVLELESREDAD 420
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 97 FHFYLGRIKAVRLEYSTAHKNLVQALR---KAPQTAAVGFRQTTQKLAVVVELL-LGDIP 152
+ +Y G I +Y A ++A + AP +A K ++V L+ G +
Sbjct: 176 YFYYSGIIFTAFKKYKKA----IEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQ 231
Query: 153 DRQIFRQAVLRRALS----PYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLR 208
AV++R + PY + Q+ G + ++ F+ D + L+
Sbjct: 232 HFPKCTPAVVQRNIKSHCKPYTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSI 291
Query: 209 HNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQ 268
+ + I+ + ++ ++ IAEK+ L + +F++ K I +G I AT++++ G +
Sbjct: 292 KSTYRRNIKKLTQTFMTLSINDIAEKVSLPKAKAEQFVL-KMIEEGEIFATINQKDGMVT 350
Query: 269 SKE 271
E
Sbjct: 351 FDE 353
>sp|Q59599|CARB_NEIGO Carbamoyl-phosphate synthase large chain OS=Neisseria gonorrhoeae
GN=carB PE=3 SV=2
Length = 1071
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 110 EYSTAHKNLVQALRKAPQT-AAVGFRQTTQKLAVVVELLLGD---IPDRQIFRQAVLRRA 165
+Y T H +VQA+ K P+ +G ++A+VV + D + D I RQ+ L++
Sbjct: 973 QYLTEHGLIVQAINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQR 1032
Query: 166 LSPYFQLTQAVRMGELQKFNEVLTTYGNQ 194
+ Y M E K + L Y Q
Sbjct: 1033 VPQYTTTAGGEAMSEGAKSRDYLGVYSVQ 1061
>sp|P55910|LCTP_BACSU L-lactate permease OS=Bacillus subtilis (strain 168) GN=lctP PE=2
SV=3
Length = 541
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 149 GDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKL 203
GD +++ +R A + +A SP++ LT A+ + L F + G +++ FK+
Sbjct: 279 GDAGEKKAYRAADIAKAWSPFYILTAAITIWSLPAFKALFQEGGLLYQSTLLFKM 333
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 76/176 (43%), Gaps = 3/176 (1%)
Query: 102 GRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIP--DRQIFRQ 159
G++ + A + ++ R + ++ Q + L + L+ DI Q +
Sbjct: 247 GKMHMSEENWEEAQSDFFESFRNYDEAGSMQRIQVLKYLVLTTMLMKSDINPFHSQETKP 306
Query: 160 AVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSI 219
+S L A + ++ + EVL+ + + + I + N+ AI +
Sbjct: 307 YKTDPRISAMTDLVDAFQRDDIHAYEEVLSKNPDVLADPFIAENIDEVSRNMRTKAILKL 366
Query: 220 GASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADI 275
A Y+R T + I++ + + E A+ I++ I D + A +D+E G + + ++D+
Sbjct: 367 IAPYTRFTLSFISKHIKISVTE-AQDILSFLILDKKLNAKIDQESGTVVVESASDV 421
>sp|A0QUP1|DNLI_MYCS2 Probable DNA ligase OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=lig PE=3 SV=1
Length = 509
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 101 LGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQA 160
L + A E + + LV+ R A A TQ +AV+V L G++P RQI
Sbjct: 2 LADVAAASTEVAASSARLVKIERIATLLARSAAEDDTQAVAVIVSWLSGELPQRQIGVGW 61
Query: 161 VLRRALSP 168
R L P
Sbjct: 62 AALRTLPP 69
>sp|Q9JW02|CARB_NEIMA Carbamoyl-phosphate synthase large chain OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=carB PE=3
SV=1
Length = 1071
Score = 31.6 bits (70), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 110 EYSTAHKNLVQALRKAPQT-AAVGFRQTTQKLAVVVELLLGD---IPDRQIFRQAVLRRA 165
+Y T H +VQ + K P+ +G ++A+VV + D + D I RQ+ L++
Sbjct: 973 QYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQR 1032
Query: 166 LSPYFQLTQAVRMGELQKFNEVLTTYGNQ 194
+ Y M E K + L Y Q
Sbjct: 1033 VPQYTTTAGGEAMSEGAKSRDHLGVYSVQ 1061
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,221,655
Number of Sequences: 539616
Number of extensions: 4440161
Number of successful extensions: 15706
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15652
Number of HSP's gapped (non-prelim): 56
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)