Query psy1676
Match_columns 343
No_of_seqs 242 out of 811
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:18:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 2.2E-86 7.4E-91 663.1 19.2 335 2-336 166-513 (523)
2 3t5v_B Nuclear mRNA export pro 100.0 1.1E-47 3.8E-52 381.8 18.9 265 30-298 139-452 (455)
3 3t5x_A PCI domain-containing p 100.0 5.9E-44 2E-48 321.1 17.0 191 84-286 3-200 (203)
4 4b4t_P 26S proteasome regulato 100.0 6E-28 2E-32 240.6 23.4 287 8-298 128-428 (445)
5 3txn_A 26S proteasome regulato 99.9 1.5E-23 5.1E-28 205.2 28.4 240 29-273 111-363 (394)
6 4b4t_Q 26S proteasome regulato 99.9 3.6E-20 1.2E-24 178.7 23.5 259 14-273 132-403 (434)
7 4b4t_R RPN7, 26S proteasome re 99.8 1.2E-16 4.2E-21 158.1 25.0 248 22-274 136-395 (429)
8 4b4t_O 26S proteasome regulato 99.7 7.1E-17 2.4E-21 158.3 18.3 220 56-278 126-360 (393)
9 4b0z_A RPN12, 26S proteasome r 99.5 8.5E-14 2.9E-18 126.8 15.6 182 64-249 14-214 (229)
10 1ufm_A COP9 complex subunit 4; 99.3 2.5E-12 8.7E-17 98.9 7.0 65 206-271 11-75 (84)
11 3chm_A COP9 signalosome comple 98.9 3.8E-08 1.3E-12 85.2 14.9 127 142-277 30-163 (169)
12 1qqe_A Vesicular transport pro 98.0 0.0004 1.4E-08 63.5 17.4 194 16-209 76-282 (292)
13 3ro3_A PINS homolog, G-protein 97.9 0.00036 1.2E-08 55.5 13.7 112 14-125 6-119 (164)
14 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0014 4.9E-08 60.2 13.7 170 16-186 75-253 (307)
15 3ro3_A PINS homolog, G-protein 97.4 0.0023 8E-08 50.6 12.2 111 15-125 47-159 (164)
16 3ulq_A Response regulator aspa 97.4 0.0052 1.8E-07 57.6 16.2 140 14-153 100-242 (383)
17 3q15_A PSP28, response regulat 97.4 0.0046 1.6E-07 58.1 15.6 144 10-153 94-240 (378)
18 3gw4_A Uncharacterized protein 97.3 0.0041 1.4E-07 52.0 13.6 111 15-125 24-137 (203)
19 3ro2_A PINS homolog, G-protein 97.3 0.0034 1.2E-07 55.9 13.3 113 14-126 180-294 (338)
20 3ro2_A PINS homolog, G-protein 97.3 0.017 5.7E-07 51.3 17.3 111 15-125 81-213 (338)
21 3sf4_A G-protein-signaling mod 97.2 0.0042 1.4E-07 57.5 13.7 112 13-124 183-296 (406)
22 3gw4_A Uncharacterized protein 97.2 0.0054 1.8E-07 51.2 12.8 113 13-125 62-177 (203)
23 3sf4_A G-protein-signaling mod 97.2 0.0052 1.8E-07 56.8 13.8 160 35-194 165-336 (406)
24 3ulq_A Response regulator aspa 97.1 0.0069 2.4E-07 56.8 13.9 112 13-124 139-253 (383)
25 4a1s_A PINS, partner of inscut 97.1 0.006 2.1E-07 57.1 13.5 113 14-126 220-334 (411)
26 4a1s_A PINS, partner of inscut 97.1 0.021 7.1E-07 53.3 16.8 114 13-126 122-254 (411)
27 2vyi_A SGTA protein; chaperone 97.0 0.06 2.1E-06 40.6 16.1 105 12-128 7-113 (131)
28 1elr_A TPR2A-domain of HOP; HO 96.9 0.021 7.3E-07 43.4 13.1 105 16-126 3-110 (131)
29 3q15_A PSP28, response regulat 96.9 0.016 5.4E-07 54.4 13.8 112 13-124 137-251 (378)
30 2qfc_A PLCR protein; TPR, HTH, 96.8 0.014 4.6E-07 52.9 12.6 108 16-125 114-226 (293)
31 1hh8_A P67PHOX, NCF-2, neutrop 96.6 0.069 2.3E-06 44.9 14.9 107 16-128 36-154 (213)
32 3uq3_A Heat shock protein STI1 96.6 0.16 5.4E-06 43.4 17.3 112 17-128 38-172 (258)
33 3nf1_A KLC 1, kinesin light ch 96.5 0.049 1.7E-06 48.1 13.8 112 13-124 23-140 (311)
34 3sz7_A HSC70 cochaperone (SGT) 96.5 0.067 2.3E-06 43.6 13.7 103 14-128 8-112 (164)
35 3u3w_A Transcriptional activat 96.4 0.02 7E-07 51.7 11.0 108 16-123 154-265 (293)
36 4gco_A Protein STI-1; structur 96.4 0.022 7.5E-07 45.2 9.8 105 12-128 8-114 (126)
37 3u3w_A Transcriptional activat 96.4 0.028 9.5E-07 50.8 11.7 104 23-126 121-227 (293)
38 2vgx_A Chaperone SYCD; alterna 96.4 0.087 3E-06 42.8 13.6 103 13-127 17-121 (148)
39 3gyz_A Chaperone protein IPGC; 96.4 0.09 3.1E-06 43.4 13.8 104 13-128 32-137 (151)
40 2ifu_A Gamma-SNAP; membrane fu 96.4 0.047 1.6E-06 49.9 13.2 110 16-127 115-226 (307)
41 1na0_A Designed protein CTPR3; 96.4 0.19 6.6E-06 37.3 15.4 101 16-128 8-110 (125)
42 2qfc_A PLCR protein; TPR, HTH, 96.3 0.025 8.5E-07 51.1 10.8 109 16-124 154-266 (293)
43 4i17_A Hypothetical protein; T 96.3 0.047 1.6E-06 46.8 12.1 104 18-127 43-149 (228)
44 2ho1_A Type 4 fimbrial biogene 96.3 0.42 1.4E-05 40.9 18.4 102 10-123 29-133 (252)
45 1qqe_A Vesicular transport pro 96.2 0.067 2.3E-06 48.4 13.3 109 18-126 38-149 (292)
46 2xev_A YBGF; tetratricopeptide 96.2 0.15 5.2E-06 38.9 13.7 102 19-128 4-109 (129)
47 3edt_B KLC 2, kinesin light ch 96.2 0.054 1.8E-06 46.9 12.2 111 14-124 40-156 (283)
48 2xcb_A PCRH, regulatory protei 96.2 0.035 1.2E-06 44.4 10.1 102 13-126 14-117 (142)
49 4b4t_T 26S proteasome regulato 96.2 0.069 2.4E-06 49.2 13.1 179 64-249 11-223 (274)
50 3qky_A Outer membrane assembly 96.1 0.092 3.1E-06 46.1 13.3 107 14-126 12-128 (261)
51 2dba_A Smooth muscle cell asso 96.1 0.12 4.2E-06 40.2 12.7 105 13-128 24-132 (148)
52 4gcn_A Protein STI-1; structur 96.1 0.14 4.8E-06 40.3 13.0 105 17-127 8-115 (127)
53 3nf1_A KLC 1, kinesin light ch 96.1 0.083 2.8E-06 46.6 12.9 112 14-125 108-225 (311)
54 2lni_A Stress-induced-phosphop 96.0 0.2 6.8E-06 38.0 13.5 102 15-128 14-117 (133)
55 1elw_A TPR1-domain of HOP; HOP 96.0 0.16 5.5E-06 37.5 12.5 100 17-128 4-105 (118)
56 3as5_A MAMA; tetratricopeptide 96.0 0.36 1.2E-05 38.5 15.5 100 16-127 7-108 (186)
57 4b4t_Q 26S proteasome regulato 96.0 0.078 2.7E-06 49.8 12.9 104 21-124 99-204 (434)
58 2fbn_A 70 kDa peptidylprolyl i 96.0 0.24 8.1E-06 41.5 14.8 107 16-128 37-155 (198)
59 3edt_B KLC 2, kinesin light ch 96.0 0.13 4.5E-06 44.4 13.3 112 13-124 81-198 (283)
60 3upv_A Heat shock protein STI1 95.9 0.22 7.5E-06 38.3 13.1 98 16-125 3-102 (126)
61 3qky_A Outer membrane assembly 95.9 0.47 1.6E-05 41.4 16.7 109 16-127 51-180 (261)
62 2ho1_A Type 4 fimbrial biogene 95.9 0.32 1.1E-05 41.6 15.4 163 16-193 70-237 (252)
63 2q7f_A YRRB protein; TPR, prot 95.8 0.75 2.6E-05 38.7 17.7 100 16-127 56-157 (243)
64 2fo7_A Synthetic consensus TPR 95.7 0.17 6E-06 37.9 11.8 98 18-127 2-101 (136)
65 3q49_B STIP1 homology and U bo 95.7 0.097 3.3E-06 40.6 10.5 102 14-127 6-109 (137)
66 2fo7_A Synthetic consensus TPR 95.7 0.25 8.4E-06 37.0 12.4 98 17-126 35-134 (136)
67 1hz4_A MALT regulatory protein 95.6 0.26 9.1E-06 45.3 14.6 138 15-153 51-192 (373)
68 2vq2_A PILW, putative fimbrial 95.6 0.39 1.3E-05 39.8 14.5 96 16-123 7-105 (225)
69 3rkv_A Putative peptidylprolyl 95.6 0.15 5E-06 41.4 11.4 106 17-128 11-130 (162)
70 2vq2_A PILW, putative fimbrial 95.5 0.48 1.6E-05 39.3 14.9 161 16-191 41-208 (225)
71 3urz_A Uncharacterized protein 95.5 0.32 1.1E-05 41.4 13.9 100 23-128 60-190 (208)
72 1a17_A Serine/threonine protei 95.5 0.31 1.1E-05 38.6 13.1 101 16-128 12-114 (166)
73 2kck_A TPR repeat; tetratricop 95.5 0.036 1.2E-06 40.9 6.8 101 17-127 6-109 (112)
74 3uq3_A Heat shock protein STI1 95.5 0.5 1.7E-05 40.1 15.1 105 17-128 79-206 (258)
75 2e2e_A Formate-dependent nitri 95.5 0.45 1.5E-05 38.7 14.1 101 16-128 43-148 (177)
76 1p5q_A FKBP52, FK506-binding p 95.4 0.46 1.6E-05 44.1 15.7 110 13-128 143-263 (336)
77 3hym_B Cell division cycle pro 95.4 0.29 9.9E-06 43.4 13.7 96 16-123 124-221 (330)
78 1xnf_A Lipoprotein NLPI; TPR, 95.4 0.26 8.9E-06 42.6 13.0 104 13-128 39-144 (275)
79 4eqf_A PEX5-related protein; a 95.3 1.1 3.7E-05 40.8 17.8 156 16-183 98-299 (365)
80 3as5_A MAMA; tetratricopeptide 95.3 0.21 7.3E-06 39.9 11.5 101 16-128 41-143 (186)
81 3vtx_A MAMA; tetratricopeptide 95.3 0.21 7.2E-06 40.9 11.6 104 13-128 35-140 (184)
82 3hym_B Cell division cycle pro 95.3 0.26 8.9E-06 43.7 12.9 106 17-128 159-269 (330)
83 1hz4_A MALT regulatory protein 95.2 0.71 2.4E-05 42.3 16.2 108 16-124 92-203 (373)
84 3vtx_A MAMA; tetratricopeptide 95.1 0.28 9.5E-06 40.2 11.7 147 17-181 5-157 (184)
85 2yhc_A BAMD, UPF0169 lipoprote 95.1 1 3.6E-05 38.5 15.9 31 97-127 149-179 (225)
86 1ihg_A Cyclophilin 40; ppiase 95.0 0.32 1.1E-05 46.1 13.4 108 16-128 222-340 (370)
87 1hh8_A P67PHOX, NCF-2, neutrop 95.0 0.43 1.5E-05 39.8 13.0 99 15-128 4-104 (213)
88 2q7f_A YRRB protein; TPR, prot 95.0 0.83 2.8E-05 38.4 14.9 120 16-153 90-211 (243)
89 3u4t_A TPR repeat-containing p 95.0 0.44 1.5E-05 41.2 13.4 150 18-182 4-159 (272)
90 4ga2_A E3 SUMO-protein ligase 94.9 0.19 6.6E-06 40.6 10.1 80 62-153 36-117 (150)
91 4i17_A Hypothetical protein; T 94.9 0.81 2.8E-05 38.8 14.7 100 18-128 8-109 (228)
92 3k9i_A BH0479 protein; putativ 94.9 0.15 5.2E-06 39.0 9.0 66 57-128 27-94 (117)
93 1fch_A Peroxisomal targeting s 94.9 1.6 5.5E-05 39.3 17.4 61 17-83 98-158 (368)
94 1fch_A Peroxisomal targeting s 94.8 0.24 8.4E-06 44.9 11.6 95 17-123 217-313 (368)
95 4ga2_A E3 SUMO-protein ligase 94.7 0.13 4.5E-06 41.7 8.6 104 13-128 27-133 (150)
96 4eqf_A PEX5-related protein; a 94.7 0.31 1.1E-05 44.5 12.0 101 17-128 177-280 (365)
97 2gw1_A Mitochondrial precursor 94.6 0.67 2.3E-05 43.9 14.7 29 98-126 452-480 (514)
98 3cv0_A Peroxisome targeting si 94.5 1.1 3.8E-05 39.4 15.0 94 18-123 173-268 (327)
99 3ma5_A Tetratricopeptide repea 94.5 0.13 4.4E-06 38.6 7.4 63 59-127 9-73 (100)
100 1kt0_A FKBP51, 51 kDa FK506-bi 94.5 0.81 2.8E-05 44.4 15.1 110 13-128 264-384 (457)
101 3mkr_A Coatomer subunit epsilo 94.4 1.3 4.5E-05 40.0 15.4 56 17-83 101-156 (291)
102 2pl2_A Hypothetical conserved 94.3 0.24 8.2E-06 42.5 9.8 103 14-128 70-184 (217)
103 2xpi_A Anaphase-promoting comp 94.3 0.5 1.7E-05 46.2 13.3 104 17-126 441-547 (597)
104 1na3_A Designed protein CTPR2; 94.2 0.32 1.1E-05 34.5 8.7 68 55-128 7-76 (91)
105 3u4t_A TPR repeat-containing p 94.0 0.3 1E-05 42.3 9.9 102 18-128 38-141 (272)
106 2l6j_A TPR repeat-containing p 94.0 0.85 2.9E-05 33.4 11.1 63 60-128 7-71 (111)
107 2h6f_A Protein farnesyltransfe 93.9 1 3.4E-05 43.0 14.1 125 11-153 91-218 (382)
108 1hxi_A PEX5, peroxisome target 93.9 0.25 8.4E-06 38.5 8.2 96 20-127 20-117 (121)
109 2c2l_A CHIP, carboxy terminus 93.8 0.5 1.7E-05 42.5 11.1 100 17-126 4-103 (281)
110 3ieg_A DNAJ homolog subfamily 93.7 1.2 4.1E-05 39.6 13.6 166 16-189 153-330 (359)
111 3fp2_A TPR repeat-containing p 93.5 0.52 1.8E-05 45.2 11.5 59 18-82 345-403 (537)
112 3qww_A SET and MYND domain-con 93.5 0.5 1.7E-05 46.1 11.3 94 28-123 309-410 (433)
113 2pl2_A Hypothetical conserved 93.4 0.24 8.1E-06 42.6 8.0 98 18-127 6-116 (217)
114 4abn_A Tetratricopeptide repea 93.4 2.4 8E-05 41.2 16.1 101 16-128 101-212 (474)
115 2xpi_A Anaphase-promoting comp 93.3 5.8 0.0002 38.4 18.9 57 62-124 378-436 (597)
116 2kat_A Uncharacterized protein 93.3 0.37 1.3E-05 36.4 8.2 64 58-127 20-85 (115)
117 3ieg_A DNAJ homolog subfamily 93.2 4.2 0.00014 35.9 18.5 100 17-128 120-221 (359)
118 3n71_A Histone lysine methyltr 93.1 0.61 2.1E-05 46.3 11.4 93 29-123 321-421 (490)
119 4gyw_A UDP-N-acetylglucosamine 93.1 0.89 3E-05 47.3 13.2 101 16-128 8-110 (723)
120 2y4t_A DNAJ homolog subfamily 93.1 1.2 4.1E-05 41.6 13.0 103 13-127 22-126 (450)
121 3mv2_B Coatomer subunit epsilo 93.0 0.68 2.3E-05 43.3 10.9 124 19-154 102-230 (310)
122 2xev_A YBGF; tetratricopeptide 92.9 1 3.5E-05 34.0 10.2 63 63-128 8-72 (129)
123 2ond_A Cleavage stimulation fa 92.6 5.5 0.00019 35.6 16.3 102 15-128 97-202 (308)
124 2vsy_A XCC0866; transferase, g 92.4 1 3.5E-05 44.5 12.0 104 13-128 19-124 (568)
125 3sz7_A HSC70 cochaperone (SGT) 92.3 1.7 5.9E-05 34.8 11.5 68 55-128 9-78 (164)
126 2xcb_A PCRH, regulatory protei 92.0 0.65 2.2E-05 36.7 8.3 61 62-128 23-85 (142)
127 1xnf_A Lipoprotein NLPI; TPR, 92.0 2.1 7.1E-05 36.7 12.3 60 17-82 77-136 (275)
128 2yhc_A BAMD, UPF0169 lipoprote 91.9 2.6 8.9E-05 35.9 12.7 104 17-128 4-129 (225)
129 1w3b_A UDP-N-acetylglucosamine 91.8 1.2 4.2E-05 40.9 11.2 122 14-153 234-357 (388)
130 4gyw_A UDP-N-acetylglucosamine 91.8 1.5 5.2E-05 45.5 12.8 101 16-128 42-144 (723)
131 2vgx_A Chaperone SYCD; alterna 91.8 0.72 2.5E-05 37.1 8.4 70 52-128 17-88 (148)
132 3gyz_A Chaperone protein IPGC; 91.6 0.66 2.2E-05 38.1 8.1 87 52-151 32-120 (151)
133 1a17_A Serine/threonine protei 91.6 2.3 8E-05 33.2 11.2 98 16-123 46-145 (166)
134 2kc7_A BFR218_protein; tetratr 91.5 0.69 2.4E-05 33.6 7.4 59 64-128 7-68 (99)
135 1elw_A TPR1-domain of HOP; HOP 91.5 2.9 0.0001 30.2 11.1 63 59-127 6-70 (118)
136 4abn_A Tetratricopeptide repea 91.4 1.1 3.8E-05 43.5 10.7 103 17-128 170-291 (474)
137 3q49_B STIP1 homology and U bo 91.3 2.4 8.2E-05 32.3 10.8 65 58-128 10-76 (137)
138 2v5f_A Prolyl 4-hydroxylase su 91.3 0.95 3.3E-05 34.3 8.2 66 63-128 11-79 (104)
139 2y4t_A DNAJ homolog subfamily 91.3 9 0.00031 35.4 21.6 160 16-188 59-234 (450)
140 2l6j_A TPR repeat-containing p 91.3 1.8 6E-05 31.6 9.6 96 16-117 3-100 (111)
141 3cv0_A Peroxisome targeting si 91.1 2.4 8.1E-05 37.2 11.9 100 17-128 21-122 (327)
142 1wao_1 Serine/threonine protei 91.0 0.89 3.1E-05 44.5 9.7 98 19-128 8-107 (477)
143 1elr_A TPR2A-domain of HOP; HO 91.0 2.3 7.9E-05 31.5 10.2 63 58-126 5-69 (131)
144 3urz_A Uncharacterized protein 90.9 3.7 0.00013 34.5 12.5 100 23-128 10-121 (208)
145 2gw1_A Mitochondrial precursor 90.9 2.2 7.5E-05 40.3 12.1 99 16-127 5-105 (514)
146 4gco_A Protein STI-1; structur 90.9 1.7 5.9E-05 33.8 9.6 61 62-128 18-80 (126)
147 1w3b_A UDP-N-acetylglucosamine 90.9 1.2 4.2E-05 40.9 10.0 97 16-124 168-266 (388)
148 3qwp_A SET and MYND domain-con 90.8 0.98 3.4E-05 43.9 9.7 70 52-123 324-399 (429)
149 1ouv_A Conserved hypothetical 90.7 1.8 6.3E-05 37.6 10.6 94 17-124 6-107 (273)
150 3upv_A Heat shock protein STI1 90.7 3.6 0.00012 31.1 11.2 63 60-128 7-71 (126)
151 2dba_A Smooth muscle cell asso 90.6 4.2 0.00015 30.9 11.7 69 57-128 28-98 (148)
152 1na0_A Designed protein CTPR3; 90.5 1.5 5.1E-05 32.2 8.6 70 53-128 5-76 (125)
153 2kck_A TPR repeat; tetratricop 90.2 2 6.7E-05 31.0 8.9 60 62-127 11-72 (112)
154 3fp2_A TPR repeat-containing p 90.1 1.8 6.2E-05 41.3 10.8 97 16-124 309-407 (537)
155 2vyi_A SGTA protein; chaperone 90.1 4.1 0.00014 29.9 10.9 65 58-128 13-79 (131)
156 1rz4_A Eukaryotic translation 89.9 1.2 4.2E-05 39.6 8.7 113 169-294 102-219 (226)
157 2if4_A ATFKBP42; FKBP-like, al 89.7 1.3 4.6E-05 40.9 9.2 108 15-128 177-297 (338)
158 2vsy_A XCC0866; transferase, g 89.2 2.8 9.6E-05 41.2 11.7 100 16-127 56-160 (568)
159 4gcn_A Protein STI-1; structur 89.1 3.6 0.00012 31.8 10.1 60 61-126 12-73 (127)
160 2lni_A Stress-induced-phosphop 88.8 4.9 0.00017 29.8 10.5 64 58-127 17-82 (133)
161 2ooe_A Cleavage stimulation fa 88.7 7.5 0.00026 37.6 14.3 103 16-128 320-424 (530)
162 4g1t_A Interferon-induced prot 88.4 3 0.0001 39.2 10.9 111 17-128 51-171 (472)
163 1wi9_A Protein C20ORF116 homol 88.3 1.1 3.6E-05 32.7 5.7 49 222-271 18-66 (72)
164 2pzi_A Probable serine/threoni 88.1 8.8 0.0003 39.1 14.8 156 29-201 403-567 (681)
165 1hxi_A PEX5, peroxisome target 88.0 1.7 5.9E-05 33.5 7.5 60 63-128 23-84 (121)
166 2heo_A Z-DNA binding protein 1 87.6 1.3 4.4E-05 31.4 5.9 41 224-268 24-64 (67)
167 2h6f_A Protein farnesyltransfe 87.4 2 6.7E-05 40.9 8.8 101 16-128 130-233 (382)
168 2fbn_A 70 kDa peptidylprolyl i 87.0 6.6 0.00022 32.3 11.1 71 58-128 39-121 (198)
169 1ouv_A Conserved hypothetical 86.4 4 0.00014 35.4 9.8 96 16-125 37-144 (273)
170 3mkr_A Coatomer subunit epsilo 85.9 10 0.00035 33.9 12.6 99 17-128 65-163 (291)
171 3rkv_A Putative peptidylprolyl 84.1 9.2 0.00031 30.2 10.3 70 58-128 12-96 (162)
172 1qgp_A Protein (double strande 83.5 2.8 9.5E-05 30.6 6.1 39 224-263 30-68 (77)
173 1p5q_A FKBP52, FK506-binding p 83.2 15 0.00052 33.5 12.6 100 12-123 191-293 (336)
174 2pzi_A Probable serine/threoni 82.1 1.1 3.8E-05 45.8 4.7 104 12-128 428-533 (681)
175 1pc2_A Mitochondria fission pr 81.8 4.2 0.00014 33.9 7.3 60 67-128 42-104 (152)
176 3qou_A Protein YBBN; thioredox 81.8 27 0.00092 30.8 13.9 59 19-83 119-177 (287)
177 1qbj_A Protein (double-strande 81.8 5.2 0.00018 29.5 7.1 52 224-277 26-77 (81)
178 2ond_A Cleavage stimulation fa 81.6 28 0.00094 30.8 16.7 106 13-127 46-166 (308)
179 3rjv_A Putative SEL1 repeat pr 80.6 15 0.00052 30.8 10.8 103 11-124 44-158 (212)
180 3ffl_A Anaphase-promoting comp 80.5 4.5 0.00015 34.2 7.1 60 64-123 27-91 (167)
181 2cg4_A Regulatory protein ASNC 80.0 7.3 0.00025 31.6 8.2 40 223-263 20-62 (152)
182 3k9i_A BH0479 protein; putativ 78.3 9.4 0.00032 28.5 7.9 74 70-151 3-77 (117)
183 2hr2_A Hypothetical protein; a 78.1 15 0.0005 30.7 9.5 108 20-128 14-135 (159)
184 3n71_A Histone lysine methyltr 77.9 23 0.00079 34.7 12.5 108 14-123 348-463 (490)
185 2e2e_A Formate-dependent nitri 77.4 13 0.00046 29.5 9.1 65 58-128 45-114 (177)
186 2c2l_A CHIP, carboxy terminus 77.0 18 0.00061 32.0 10.5 63 60-128 7-71 (281)
187 2r5s_A Uncharacterized protein 76.8 27 0.00092 27.9 12.2 31 96-126 109-139 (176)
188 4f3v_A ESX-1 secretion system 76.4 45 0.0015 30.3 13.9 120 19-153 104-226 (282)
189 3t5v_A Nuclear mRNA export pro 76.3 4.4 0.00015 37.8 6.4 66 179-247 177-246 (316)
190 4g1t_A Interferon-induced prot 75.9 5.8 0.0002 37.1 7.3 73 51-123 45-122 (472)
191 1xn7_A Hypothetical protein YH 75.7 4.9 0.00017 29.5 5.2 36 221-257 12-47 (78)
192 3ma5_A Tetratricopeptide repea 74.2 11 0.00038 27.5 7.1 34 95-128 7-40 (100)
193 1kt0_A FKBP51, 51 kDa FK506-bi 73.7 24 0.00083 33.7 11.2 100 12-123 312-414 (457)
194 3rjv_A Putative SEL1 repeat pr 73.6 35 0.0012 28.4 11.1 101 11-126 12-120 (212)
195 2htj_A P fimbrial regulatory p 72.9 9.9 0.00034 27.3 6.4 35 224-259 13-47 (81)
196 1nzn_A CGI-135 protein, fissio 71.8 8.4 0.00029 31.0 6.1 60 67-128 45-107 (126)
197 2cfx_A HTH-type transcriptiona 71.7 8.4 0.00029 30.9 6.3 40 223-263 17-59 (144)
198 2k02_A Ferrous iron transport 71.7 5.1 0.00018 30.1 4.5 39 221-260 12-50 (87)
199 1na3_A Designed protein CTPR2; 70.3 22 0.00075 24.2 7.7 36 93-128 7-42 (91)
200 2v5f_A Prolyl 4-hydroxylase su 70.2 12 0.00043 27.8 6.7 54 97-151 7-62 (104)
201 2v79_A DNA replication protein 69.7 2.8 9.6E-05 34.1 2.9 105 172-295 6-112 (135)
202 2p5v_A Transcriptional regulat 69.6 9.4 0.00032 31.3 6.3 40 223-263 22-64 (162)
203 2vn2_A DNAD, chromosome replic 69.2 20 0.00069 28.3 8.0 63 226-297 52-114 (128)
204 2dbb_A Putative HTH-type trans 68.9 9 0.00031 30.9 5.9 40 223-263 21-63 (151)
205 1jgs_A Multiple antibiotic res 68.3 38 0.0013 26.0 9.5 41 224-265 47-87 (138)
206 2ooe_A Cleavage stimulation fa 68.3 49 0.0017 31.7 12.2 99 17-127 356-457 (530)
207 2ia0_A Putative HTH-type trans 67.4 11 0.00037 31.5 6.3 40 223-263 29-71 (171)
208 3i4p_A Transcriptional regulat 66.8 8.3 0.00028 31.8 5.4 42 222-264 14-58 (162)
209 2jt1_A PEFI protein; solution 66.7 12 0.00042 27.2 5.6 34 224-258 23-56 (77)
210 1wao_1 Serine/threonine protei 66.6 8.3 0.00028 37.4 6.1 93 15-119 38-134 (477)
211 4e6h_A MRNA 3'-END-processing 66.5 43 0.0015 34.3 11.8 170 17-199 378-575 (679)
212 1ub9_A Hypothetical protein PH 66.3 21 0.00071 26.0 7.1 37 224-261 29-65 (100)
213 2r5s_A Uncharacterized protein 66.1 5.7 0.00019 32.2 4.2 60 63-126 12-71 (176)
214 1ihg_A Cyclophilin 40; ppiase 65.6 37 0.0013 31.6 10.3 70 59-128 225-306 (370)
215 2y75_A HTH-type transcriptiona 65.5 15 0.00052 28.7 6.5 46 224-270 25-70 (129)
216 3o48_A Mitochondria fission 1 64.4 15 0.0005 29.9 6.2 37 92-128 75-111 (134)
217 4b4t_P 26S proteasome regulato 64.1 78 0.0027 30.4 12.6 65 58-122 138-204 (445)
218 2kat_A Uncharacterized protein 62.6 27 0.00093 25.5 7.3 33 96-128 20-52 (115)
219 2w25_A Probable transcriptiona 62.1 17 0.00056 29.3 6.3 40 223-263 19-61 (150)
220 3lwf_A LIN1550 protein, putati 61.3 16 0.00056 30.3 6.1 47 224-271 43-89 (159)
221 2if4_A ATFKBP42; FKBP-like, al 61.0 25 0.00087 32.0 8.1 101 16-128 229-332 (338)
222 2e1c_A Putative HTH-type trans 59.9 11 0.00039 31.4 5.0 40 223-263 39-81 (171)
223 2hzt_A Putative HTH-type trans 59.9 29 0.00098 26.2 7.0 42 223-265 25-67 (107)
224 3bee_A Putative YFRE protein; 59.1 11 0.00038 27.9 4.3 49 73-127 25-75 (93)
225 1y8m_A FIS1; mitochondria, unk 58.8 19 0.00064 29.7 5.9 36 93-128 75-110 (144)
226 2cyy_A Putative HTH-type trans 58.3 14 0.00047 29.9 5.1 40 223-263 19-61 (151)
227 2gxg_A 146AA long hypothetical 58.1 25 0.00086 27.3 6.6 41 223-264 48-88 (146)
228 2hr2_A Hypothetical protein; a 58.1 39 0.0013 28.0 7.9 68 57-124 11-86 (159)
229 3tqn_A Transcriptional regulat 58.0 47 0.0016 25.4 8.0 47 222-271 29-76 (113)
230 1sfx_A Conserved hypothetical 57.6 52 0.0018 23.9 8.7 38 224-262 33-70 (109)
231 3t8r_A Staphylococcus aureus C 57.4 12 0.00041 30.4 4.5 46 224-270 27-72 (143)
232 2pn6_A ST1022, 150AA long hypo 56.7 18 0.00063 28.9 5.6 41 222-263 14-57 (150)
233 3cuo_A Uncharacterized HTH-typ 55.8 49 0.0017 23.9 7.5 37 224-261 37-73 (99)
234 1klx_A Cysteine rich protein B 55.7 29 0.001 27.0 6.6 90 23-126 31-128 (138)
235 3by6_A Predicted transcription 55.6 46 0.0016 26.1 7.7 46 222-270 31-77 (126)
236 3neu_A LIN1836 protein; struct 55.2 51 0.0017 25.7 7.9 47 221-270 32-79 (125)
237 1r7j_A Conserved hypothetical 55.1 39 0.0013 25.3 6.8 54 211-271 9-62 (95)
238 1z7u_A Hypothetical protein EF 55.0 51 0.0017 25.0 7.7 41 224-265 34-75 (112)
239 2xm6_A Protein corresponding t 54.7 48 0.0016 31.4 9.2 26 98-123 366-395 (490)
240 1ku9_A Hypothetical protein MJ 54.4 25 0.00084 27.4 6.0 40 224-264 40-79 (152)
241 1ylf_A RRF2 family protein; st 54.0 19 0.00066 29.2 5.3 60 224-286 29-88 (149)
242 2d1h_A ST1889, 109AA long hypo 53.8 61 0.0021 23.5 8.2 39 223-262 34-72 (109)
243 1oyi_A Double-stranded RNA-bin 53.6 21 0.00072 26.4 4.9 32 226-258 31-62 (82)
244 2xm6_A Protein corresponding t 53.3 88 0.003 29.5 10.8 93 17-123 39-143 (490)
245 1xd7_A YWNA; structural genomi 53.3 23 0.0008 28.5 5.7 45 224-271 23-67 (145)
246 2fbh_A Transcriptional regulat 52.4 32 0.0011 26.7 6.3 43 222-265 49-91 (146)
247 2hr3_A Probable transcriptiona 52.3 29 0.001 27.0 6.1 41 223-264 48-88 (147)
248 3bdd_A Regulatory protein MARR 52.2 24 0.00083 27.2 5.6 40 224-264 44-83 (142)
249 1i1g_A Transcriptional regulat 51.9 18 0.00062 28.5 4.7 36 223-259 16-51 (141)
250 1zu2_A Mitochondrial import re 51.9 45 0.0016 27.6 7.3 50 73-128 62-124 (158)
251 3eco_A MEPR; mutlidrug efflux 51.8 18 0.00062 28.0 4.7 41 224-265 46-86 (139)
252 2nnn_A Probable transcriptiona 51.7 30 0.001 26.6 6.0 41 224-265 51-91 (140)
253 2xvc_A ESCRT-III, SSO0910; cel 51.4 18 0.00062 24.9 3.8 35 222-257 22-56 (59)
254 3tgn_A ADC operon repressor AD 51.1 27 0.00093 27.2 5.7 39 226-265 52-90 (146)
255 3k69_A Putative transcription 50.8 18 0.00063 29.9 4.8 46 224-270 27-72 (162)
256 3k0l_A Repressor protein; heli 49.6 23 0.0008 28.4 5.2 41 224-265 59-99 (162)
257 2a61_A Transcriptional regulat 49.3 35 0.0012 26.4 6.1 41 224-265 46-86 (145)
258 3bpv_A Transcriptional regulat 48.8 33 0.0011 26.3 5.8 42 224-266 42-83 (138)
259 2ek5_A Predicted transcription 48.2 65 0.0022 25.4 7.5 46 222-270 24-70 (129)
260 3mv2_B Coatomer subunit epsilo 48.0 1.7E+02 0.0057 26.9 14.5 153 22-192 141-307 (310)
261 2fbi_A Probable transcriptiona 47.9 29 0.001 26.7 5.4 42 224-266 49-90 (142)
262 3jth_A Transcription activator 47.3 65 0.0022 23.4 7.0 36 224-260 35-70 (98)
263 2pg4_A Uncharacterized protein 47.3 13 0.00046 27.3 3.0 32 225-257 30-62 (95)
264 3ly7_A Transcriptional activat 46.6 1.6E+02 0.0055 27.8 11.1 61 62-127 282-342 (372)
265 1uly_A Hypothetical protein PH 46.6 55 0.0019 27.7 7.3 35 224-259 32-66 (192)
266 3bro_A Transcriptional regulat 46.5 30 0.001 26.7 5.2 40 225-265 50-89 (141)
267 1lj9_A Transcriptional regulat 46.4 26 0.0009 27.2 4.9 40 224-264 42-81 (144)
268 3e4b_A ALGK; tetratricopeptide 46.2 1.9E+02 0.0066 27.1 13.8 96 19-124 178-280 (452)
269 3hsr_A HTH-type transcriptiona 46.0 21 0.00071 27.9 4.2 42 223-265 48-89 (140)
270 3oop_A LIN2960 protein; protei 45.9 22 0.00074 27.8 4.3 41 224-265 50-90 (143)
271 2rdp_A Putative transcriptiona 45.6 33 0.0011 26.8 5.4 41 224-265 55-95 (150)
272 2fa5_A Transcriptional regulat 45.6 66 0.0023 25.4 7.4 41 223-264 61-101 (162)
273 3g3z_A NMB1585, transcriptiona 45.5 26 0.00088 27.4 4.7 40 224-264 44-83 (145)
274 3fm5_A Transcriptional regulat 45.3 29 0.00099 27.3 5.0 41 224-265 53-93 (150)
275 3qww_A SET and MYND domain-con 45.3 81 0.0028 30.2 9.1 70 14-83 337-408 (433)
276 3txn_A 26S proteasome regulato 45.2 2.1E+02 0.0071 27.2 12.6 62 62-123 104-167 (394)
277 3ech_A MEXR, multidrug resista 44.9 16 0.00056 28.6 3.4 41 224-265 50-90 (142)
278 3nqo_A MARR-family transcripti 44.5 33 0.0011 28.6 5.4 42 223-265 55-96 (189)
279 3s2w_A Transcriptional regulat 44.2 26 0.00088 28.0 4.6 41 224-265 63-103 (159)
280 2nyx_A Probable transcriptiona 44.2 28 0.00095 28.2 4.8 41 224-265 58-98 (168)
281 2kko_A Possible transcriptiona 43.9 64 0.0022 24.2 6.6 37 224-261 37-73 (108)
282 2eth_A Transcriptional regulat 43.4 37 0.0013 26.9 5.4 40 224-264 57-96 (154)
283 2qww_A Transcriptional regulat 43.3 23 0.00079 27.9 4.1 40 224-264 54-95 (154)
284 2x4h_A Hypothetical protein SS 43.3 51 0.0017 25.6 6.2 36 222-258 28-63 (139)
285 2k9l_A RNA polymerase sigma fa 43.3 23 0.0008 25.5 3.7 28 222-250 45-72 (76)
286 3ffl_A Anaphase-promoting comp 43.2 1.2E+02 0.004 25.4 8.5 65 56-120 62-147 (167)
287 3qou_A Protein YBBN; thioredox 42.8 74 0.0025 27.8 7.9 122 16-153 150-273 (287)
288 3nrv_A Putative transcriptiona 42.8 25 0.00086 27.5 4.3 40 224-264 53-92 (148)
289 3ax2_A Mitochondrial import re 42.4 27 0.00093 25.2 3.9 29 100-128 22-50 (73)
290 1klx_A Cysteine rich protein B 42.2 49 0.0017 25.6 5.9 70 43-124 17-90 (138)
291 3c18_A Nucleotidyltransferase- 41.8 2.1E+02 0.007 26.2 12.8 139 98-261 133-274 (290)
292 3deu_A Transcriptional regulat 41.5 34 0.0012 27.8 5.0 42 223-265 66-107 (166)
293 1r1u_A CZRA, repressor protein 41.4 89 0.0031 23.2 7.1 37 224-261 38-74 (106)
294 3bj6_A Transcriptional regulat 41.2 51 0.0018 25.7 5.9 40 224-264 53-92 (152)
295 3lpz_A GET4 (YOR164C homolog); 40.8 1.9E+02 0.0064 26.9 10.5 28 172-199 251-278 (336)
296 2oqg_A Possible transcriptiona 40.8 91 0.0031 23.1 7.1 37 224-261 33-69 (114)
297 1s3j_A YUSO protein; structura 40.5 35 0.0012 26.8 4.8 40 224-264 50-89 (155)
298 1z6r_A MLC protein; transcript 40.4 36 0.0012 32.1 5.6 36 222-258 27-62 (406)
299 4aik_A Transcriptional regulat 40.3 72 0.0025 25.4 6.8 42 223-265 44-85 (151)
300 1y0u_A Arsenical resistance op 40.0 70 0.0024 23.3 6.1 44 224-272 42-85 (96)
301 3bja_A Transcriptional regulat 39.9 24 0.00083 27.1 3.7 41 223-264 45-85 (139)
302 3cdh_A Transcriptional regulat 39.8 50 0.0017 25.9 5.7 41 223-264 55-95 (155)
303 4b8x_A SCO5413, possible MARR- 39.6 34 0.0012 27.2 4.6 41 224-265 50-90 (147)
304 3e4b_A ALGK; tetratricopeptide 39.3 57 0.002 30.9 6.9 96 17-124 248-351 (452)
305 3cjn_A Transcriptional regulat 39.2 35 0.0012 27.1 4.7 40 224-264 65-104 (162)
306 3pqk_A Biofilm growth-associat 38.6 1.1E+02 0.0039 22.3 7.6 37 224-261 35-71 (102)
307 4hbl_A Transcriptional regulat 38.4 23 0.00078 28.0 3.3 41 224-265 54-94 (149)
308 2qvo_A Uncharacterized protein 38.0 51 0.0018 24.0 5.1 30 226-256 31-60 (95)
309 2kc7_A BFR218_protein; tetratr 37.8 39 0.0013 23.7 4.3 30 99-128 4-33 (99)
310 4gq2_M Nucleoporin NUP120; bet 37.4 35 0.0012 36.4 5.4 54 62-123 815-868 (950)
311 1z05_A Transcriptional regulat 37.3 46 0.0016 31.6 5.9 36 222-258 50-85 (429)
312 1on2_A Transcriptional regulat 37.3 55 0.0019 25.5 5.5 35 223-258 20-54 (142)
313 3f3x_A Transcriptional regulat 37.0 40 0.0014 26.2 4.6 38 227-265 52-89 (144)
314 2pi2_A Replication protein A 3 36.7 7.3 0.00025 35.3 0.0 39 224-263 223-262 (270)
315 2pex_A Transcriptional regulat 36.4 36 0.0012 26.8 4.2 41 223-264 59-99 (153)
316 3e6m_A MARR family transcripti 35.8 31 0.0011 27.6 3.8 40 224-264 66-105 (161)
317 3boq_A Transcriptional regulat 35.6 25 0.00085 28.0 3.1 42 222-264 59-100 (160)
318 2f2e_A PA1607; transcription f 35.3 62 0.0021 25.9 5.6 42 223-265 35-76 (146)
319 2b0l_A GTP-sensing transcripti 34.9 1.2E+02 0.0042 22.7 6.9 48 222-270 39-87 (102)
320 1y4m_A HERV-FRD_6P24.1 proviru 34.6 7.3 0.00025 26.5 -0.3 13 6-18 24-36 (53)
321 3r0a_A Putative transcriptiona 34.6 1.5E+02 0.0053 22.6 9.2 36 226-262 43-78 (123)
322 2bv6_A MGRA, HTH-type transcri 34.2 39 0.0013 26.1 4.1 40 224-264 50-89 (142)
323 1tbx_A ORF F-93, hypothetical 34.0 76 0.0026 23.0 5.5 45 224-269 21-69 (99)
324 2fsw_A PG_0823 protein; alpha- 33.4 60 0.0021 24.3 4.9 42 223-265 36-78 (107)
325 3kp7_A Transcriptional regulat 33.0 33 0.0011 27.0 3.5 35 223-258 49-83 (151)
326 2lnb_A Z-DNA-binding protein 1 32.9 73 0.0025 23.3 4.8 38 218-256 27-64 (80)
327 1mof_A Moloney murine leukemia 32.9 8.1 0.00028 26.5 -0.3 13 6-18 26-38 (55)
328 2frh_A SARA, staphylococcal ac 32.6 24 0.00083 27.4 2.5 40 224-264 52-91 (127)
329 3qwp_A SET and MYND domain-con 31.7 1.7E+02 0.0058 27.7 8.9 70 14-83 326-397 (429)
330 1xmk_A Double-stranded RNA-spe 30.9 69 0.0023 23.3 4.5 35 222-257 22-57 (79)
331 3k2z_A LEXA repressor; winged 30.2 84 0.0029 26.3 5.8 35 224-259 23-57 (196)
332 1sfu_A 34L protein; protein/Z- 30.0 67 0.0023 23.3 4.3 32 225-257 29-60 (75)
333 2h09_A Transcriptional regulat 29.9 1.4E+02 0.0048 23.5 6.9 34 224-258 53-86 (155)
334 4fhn_B Nucleoporin NUP120; pro 29.9 43 0.0015 36.4 4.7 54 62-123 817-870 (1139)
335 3iuo_A ATP-dependent DNA helic 29.8 71 0.0024 25.0 4.8 33 223-256 30-63 (122)
336 3c7j_A Transcriptional regulat 29.8 2.5E+02 0.0085 24.1 9.0 46 222-270 46-91 (237)
337 3u2r_A Regulatory protein MARR 29.6 52 0.0018 26.4 4.2 41 224-265 61-101 (168)
338 2dk5_A DNA-directed RNA polyme 29.5 51 0.0018 24.5 3.7 35 224-259 35-69 (91)
339 3dkw_A DNR protein; CRP-FNR, H 29.4 1.4E+02 0.0048 24.6 7.1 43 224-271 177-219 (227)
340 1u2w_A CADC repressor, cadmium 29.4 1.7E+02 0.0058 22.3 7.1 36 223-259 54-89 (122)
341 4b4t_R RPN7, 26S proteasome re 29.3 80 0.0027 30.1 6.1 63 60-123 134-196 (429)
342 2wte_A CSA3; antiviral protein 29.0 41 0.0014 29.8 3.7 35 224-259 165-199 (244)
343 1om2_A Protein (mitochondrial 28.8 1.1E+02 0.0039 23.1 5.6 29 100-128 25-53 (95)
344 4f3v_A ESX-1 secretion system 28.7 3.2E+02 0.011 24.5 11.6 103 19-127 137-240 (282)
345 1v4r_A Transcriptional repress 28.7 34 0.0012 25.5 2.6 46 222-270 31-77 (102)
346 4ev0_A Transcription regulator 28.6 2.3E+02 0.0078 23.0 8.3 42 224-270 162-203 (216)
347 1z91_A Organic hydroperoxide r 28.3 36 0.0012 26.5 2.9 39 224-263 53-91 (147)
348 1ucr_A Protein DSVD; dissimila 28.2 74 0.0025 23.2 4.2 35 221-256 17-52 (78)
349 2hoe_A N-acetylglucosamine kin 27.9 69 0.0024 29.8 5.2 35 223-258 31-65 (380)
350 2fxa_A Protease production reg 27.8 49 0.0017 28.1 3.9 41 224-265 61-101 (207)
351 3hrs_A Metalloregulator SCAR; 27.7 96 0.0033 26.5 5.8 38 220-258 15-52 (214)
352 3jw4_A Transcriptional regulat 27.3 24 0.00082 27.8 1.6 41 224-265 56-96 (148)
353 3ihu_A Transcriptional regulat 27.0 2.2E+02 0.0075 24.0 8.0 46 222-270 36-81 (222)
354 4ham_A LMO2241 protein; struct 25.7 2.3E+02 0.008 21.9 14.6 69 202-273 14-83 (134)
355 1j5y_A Transcriptional regulat 25.3 1.6E+02 0.0055 24.3 6.7 41 224-268 35-76 (187)
356 3eet_A Putative GNTR-family tr 25.3 2.5E+02 0.0086 24.8 8.3 49 221-272 48-97 (272)
357 2jsc_A Transcriptional regulat 25.2 1.9E+02 0.0064 21.9 6.6 36 224-260 33-68 (118)
358 4fx0_A Probable transcriptiona 25.1 68 0.0023 25.5 4.0 40 224-265 51-90 (148)
359 3f6o_A Probable transcriptiona 25.0 1.7E+02 0.0057 22.1 6.2 37 224-261 30-66 (118)
360 2lkp_A Transcriptional regulat 25.0 1.3E+02 0.0045 22.5 5.6 34 224-258 44-77 (119)
361 1q1h_A TFE, transcription fact 24.7 1.2E+02 0.0042 22.4 5.3 45 224-269 32-78 (110)
362 2oz6_A Virulence factor regula 24.6 75 0.0025 25.9 4.4 33 224-257 163-195 (207)
363 2hs5_A Putative transcriptiona 24.5 2.7E+02 0.0091 23.9 8.2 46 222-270 48-93 (239)
364 3e97_A Transcriptional regulat 24.4 76 0.0026 26.5 4.5 33 224-257 174-206 (231)
365 3f8m_A GNTR-family protein tra 24.2 2.6E+02 0.0089 24.3 8.1 49 220-272 30-79 (248)
366 3edp_A LIN2111 protein; APC883 24.0 2.3E+02 0.0079 24.4 7.7 48 221-271 28-76 (236)
367 1yyv_A Putative transcriptiona 24.0 2.5E+02 0.0087 21.7 8.7 42 223-265 46-88 (131)
368 2qlz_A Transcription factor PF 23.8 56 0.0019 28.8 3.5 47 221-271 174-220 (232)
369 3df8_A Possible HXLR family tr 23.7 70 0.0024 24.3 3.7 36 225-261 42-78 (111)
370 3b73_A PHIH1 repressor-like pr 23.6 1.1E+02 0.0038 23.5 4.9 34 224-258 26-61 (111)
371 2k9m_A RNA polymerase sigma fa 23.5 69 0.0024 25.5 3.7 28 222-250 36-63 (130)
372 1ft9_A Carbon monoxide oxidati 23.4 82 0.0028 26.2 4.5 33 224-257 162-194 (222)
373 3la7_A Global nitrogen regulat 23.4 81 0.0028 26.8 4.5 43 224-271 192-234 (243)
374 1mkm_A ICLR transcriptional re 23.2 1.5E+02 0.0051 25.7 6.3 35 224-259 22-56 (249)
375 2wv0_A YVOA, HTH-type transcri 23.0 2.9E+02 0.0098 23.8 8.1 46 222-270 30-76 (243)
376 1ldd_A APC2WHB, anaphase promo 22.7 1E+02 0.0035 22.2 4.1 47 211-257 8-64 (74)
377 1hw1_A FADR, fatty acid metabo 22.3 2.5E+02 0.0086 23.7 7.5 46 222-270 27-73 (239)
378 2p7v_B Sigma-70, RNA polymeras 22.1 1.1E+02 0.0039 20.5 4.2 29 223-252 23-51 (68)
379 3b02_A Transcriptional regulat 21.6 68 0.0023 26.1 3.5 33 224-257 138-170 (195)
380 3dv8_A Transcriptional regulat 21.2 3.3E+02 0.011 22.0 7.9 42 224-270 168-209 (220)
381 1w9r_A CBPA-R2, choline bindin 21.0 1.1E+02 0.0038 23.4 4.1 34 304-337 33-67 (119)
382 2gau_A Transcriptional regulat 21.0 94 0.0032 25.9 4.3 42 224-270 179-220 (232)
383 2zcw_A TTHA1359, transcription 20.9 99 0.0034 25.2 4.4 42 224-270 145-186 (202)
384 3ryp_A Catabolite gene activat 20.9 99 0.0034 25.2 4.4 32 225-257 167-198 (210)
385 3d0s_A Transcriptional regulat 20.8 98 0.0033 25.7 4.4 42 224-270 176-217 (227)
386 2fmy_A COOA, carbon monoxide o 20.4 1E+02 0.0035 25.5 4.4 33 224-257 166-198 (220)
387 3iwz_A CAP-like, catabolite ac 20.4 1E+02 0.0035 25.6 4.4 32 225-257 187-218 (230)
388 3bwg_A Uncharacterized HTH-typ 20.3 2.8E+02 0.0097 23.8 7.5 47 222-271 25-72 (239)
389 2pjp_A Selenocysteine-specific 20.3 1.7E+02 0.0058 22.4 5.4 33 224-257 19-51 (121)
390 3sxy_A Transcriptional regulat 20.2 2.1E+02 0.0072 24.0 6.5 46 222-270 32-77 (218)
391 1zyb_A Transcription regulator 20.0 1E+02 0.0035 25.9 4.4 43 224-271 185-227 (232)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-86 Score=663.13 Aligned_cols=335 Identities=38% Similarity=0.660 Sum_probs=234.9
Q ss_pred cccchhccchhHHHHHHHHHHHHHHHhhcccHH----------HHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhc
Q psy1676 2 SKITSENRRTSDLIAAKCYFYHSRVHELTNNLD----------KVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYN 71 (343)
Q Consensus 2 ~~~~~~~~~~~d~~~a~~~~y~~~~~e~~~~~~----------~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~ 71 (343)
++++++||||||+|+||+||||||+||+.+++. +||+.|++++|||++|||.++|++++|+|+|+|++.+
T Consensus 166 ~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~ 245 (523)
T 4b4t_S 166 NLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNG 245 (523)
T ss_dssp -------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccC
Confidence 578999999999999999999999999998775 4999999999999999999999999999999999999
Q ss_pred cHHHHHhhhhhcCCCCC-CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc-chHHHHHHHHHHHHHHHHhcC
Q psy1676 72 LYDQADKLVKKSAFPEN-ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT-AAVGFRQTTQKLAVVVELLLG 149 (343)
Q Consensus 72 ~~~~a~~li~k~~~p~~-~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~-sa~~~~~~i~K~li~v~LL~G 149 (343)
.|++|.++++|+.||++ .+++|+++|+||.|||++++++|.+|+++|++|+++||+. .+.+|++.++||+|||.||+|
T Consensus 246 ~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG 325 (523)
T 4b4t_S 246 EVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMG 325 (523)
T ss_dssp CSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcC
Confidence 99999999999999986 6899999999999999999999999999999999999876 467899999999999999999
Q ss_pred CCCChhhhhhHhHhhhhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhhcccccChH
Q psy1676 150 DIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPT 229 (343)
Q Consensus 150 ~iP~~~~~~~~~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~ir~i~~~ys~Isl~ 229 (343)
++|++++|.++.++..+.||.+|++||+.||+..|+.++++|+..|.+||+|+||++|+++|+|++||+|+++|++||++
T Consensus 326 ~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~ 405 (523)
T 4b4t_S 326 DIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLR 405 (523)
T ss_dssp CCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHH
T ss_pred CCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccccccchHHHHHHHHHHHHhhHHHhhhcCCCCCC
Q psy1676 230 KIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQSVKAMRYPPKS 309 (343)
Q Consensus 230 dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s~~ep~~~~~~rI~~cl~l~~~~~~am~~~~~~ 309 (343)
|||.+++++|+++|||+||+||.+|.|+|+|||++|+|+|++.+|+|+|.||+.+||+||++|++|||++||||||||++
T Consensus 406 dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vkaMryp~~~ 485 (523)
T 4b4t_S 406 DICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPEDK 485 (523)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC----------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhhH-hhHHHHHHhcc
Q psy1676 310 YGKDLESAEERREREQ-QDLELAKEMAE 336 (343)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 336 (343)
++++.+++++++++++ .+.+++.+++|
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~d~~~d 513 (523)
T 4b4t_S 486 KTQQNEKSENGENDDDTLDGDLMDDMSD 513 (523)
T ss_dssp ----------------------------
T ss_pred chhhHHHHHHHhhhhhhhhhcccccccc
Confidence 9888888887776654 45566666654
No 2
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-47 Score=381.85 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=234.0
Q ss_pred cccHHHHHHHHHHHHHHhhhcCC----------cchhHHHHHHHHHHHHhhccHHHHHhhhhhc---C-CCC--CCChHH
Q psy1676 30 TNNLDKVRSFLNARLRIATLRND----------FEGQAVLINCLLRNYLHYNLYDQADKLVKKS---A-FPE--NASNNE 93 (343)
Q Consensus 30 ~~~~~~~~~~l~~~~r~a~~~~~----------~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~---~-~p~--~~~~~~ 93 (343)
...++.+.+.++.+|.++..+.+ +++..+++|+|+++||+.|+.++|+++++.+ . +|. ..+.+|
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 45788999999999997665422 2345599999999999999999999999964 2 232 368899
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh-CCccc----hHHHHHHHHHHHHHHHHhcCCCCChhhhhhHhHhhhhhh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRK-APQTA----AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSP 168 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~-~~~~s----a~~~~~~i~K~li~v~LL~G~iP~~~~~~~~~l~~~l~~ 168 (343)
+++|+||+|++++.+++|.+|+++|++|+++ ||... +.+|++.++||+||+.|++|++|+++++.++.. +.+.+
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~-~~L~~ 297 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLS-QETID 297 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSC-HHHHH
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccch-HHHHH
Confidence 9999999999999999999999999999999 99753 478999999999999999999999999986542 45777
Q ss_pred -hHHHHHHHHhCCHHHHHHHHHhcccccccccc-HHHHHHHHHHHHHHHHHHH----hhcc--cccChHHHHHHhCC---
Q psy1676 169 -YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYT-FKLILRLRHNVIKTAIRSI----GASY--SRITPTKIAEKLGL--- 237 (343)
Q Consensus 169 -Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~-~~Lv~~l~~~v~r~~ir~i----~~~y--s~Isl~dIa~~l~l--- 237 (343)
|.+|++||++||+.+|++++++|+.+|.++|+ |.++++||..|+|+++|++ ...| ++||+++|+.++++
T Consensus 298 ~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~ 377 (455)
T 3t5v_B 298 NWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIG 377 (455)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccC
Confidence 99999999999999999999999999999999 9999999999999999999 4567 89999999999985
Q ss_pred -----------------CCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccccccchHHHHHHHHHHHHhhHH
Q psy1676 238 -----------------ESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQ 298 (343)
Q Consensus 238 -----------------~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s~~ep~~~~~~rI~~cl~l~~~ 298 (343)
.|++||||+||+||.+|+|+|+|+|++|+|+++++++ ..+|||.+.++|..|..+|++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~---~~~pFP~l~~~~~~~f~~~~~ 452 (455)
T 3t5v_B 378 PTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTM---IQEIVPPVNERITKMFPAHSH 452 (455)
T ss_dssp CCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSC---GGGTSCCHHHHHHHHSCCCCS
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCC---CCCCCCChHHHHHHHcCCCCC
Confidence 2689999999999999999999999999999887765 458999999999998887764
No 3
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=5.9e-44 Score=321.05 Aligned_cols=191 Identities=15% Similarity=0.268 Sum_probs=172.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCChhhhhhHhHh
Q psy1676 84 AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLR 163 (343)
Q Consensus 84 ~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~~~~~~~~l~ 163 (343)
.+++..|++|+++|+||.|++++.+++|.+|+++|++|+++||.. +.+|++.++||+||+.|++|++|+.+++..+
T Consensus 3 ~~~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~--- 78 (203)
T 3t5x_A 3 HMKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMILIYLLPVKMLLGHMPTVELLKKY--- 78 (203)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTTCEECHHHHHHT---
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHcCCCCCHHHhhhC---
Confidence 456677899999999999999999999999999999999999986 5889999999999999999999999888743
Q ss_pred hhhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhh--cccccChHHHHHHhCCC---
Q psy1676 164 RALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGA--SYSRITPTKIAEKLGLE--- 238 (343)
Q Consensus 164 ~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~ir~i~~--~ys~Isl~dIa~~l~l~--- 238 (343)
.+.+|.+|++||++||+.+|++++++|+.+|.++|+|.+++++|..|+|+++|+++. .|++||+++|+.+++++
T Consensus 79 -~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~ 157 (203)
T 3t5x_A 79 -HLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVE 157 (203)
T ss_dssp -TCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCT
T ss_pred -chhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 446899999999999999999999999999999999999999999999999999987 69999999999999763
Q ss_pred --CHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccccccchHHHH
Q psy1676 239 --SPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFH 286 (343)
Q Consensus 239 --s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s~~ep~~~~~ 286 (343)
|++||||+||+||.+|.|+|+|||++|+|+.+ +++|||.+.
T Consensus 158 ~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVls-------k~~pFP~l~ 200 (203)
T 3t5x_A 158 DVDIDEVQCILANLIYMGHVKGYISHQHQKLVVS-------KQNPFPPLS 200 (203)
T ss_dssp TCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEEC-------SSCSSCCGG
T ss_pred CCCHHHHHHHHHHHHHcCceEEEEcccccEEEEC-------CCCCCCCcc
Confidence 69999999999999999999999999988764 557888654
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6e-28 Score=240.61 Aligned_cols=287 Identities=16% Similarity=0.136 Sum_probs=219.9
Q ss_pred ccchhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc---C
Q psy1676 8 NRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS---A 84 (343)
Q Consensus 8 ~~~~~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~---~ 84 (343)
+|--++...|++...++..+|-.|.+.++...|....+-.....+.....-+....+|+|+..+++..|..+++++ .
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 4555677789999999999999999999999998887765544455445566777899999999999999999986 2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCChhhhhhHhHh-
Q psy1676 85 FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLR- 163 (343)
Q Consensus 85 ~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~~~~~~~~l~- 163 (343)
++...+....+.|+.|+|++++.+++|.+|+.+|..++..............++++++.+.++.+..|.++.+.++..+
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc
Confidence 3333456789999999999999999999999999999984332222344677899999999999888886555433222
Q ss_pred ---hhhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccH-------HHHHHHHHHHHHHHHHHHhhcccccChHHHHH
Q psy1676 164 ---RALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF-------KLILRLRHNVIKTAIRSIGASYSRITPTKIAE 233 (343)
Q Consensus 164 ---~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~-------~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~ 233 (343)
..+.+|..|+++|.++++..|..+++.|+..+..+... ..+..|+.+|+.+++++++++|++|+++.||.
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~ 367 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNE 367 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHH
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHH
Confidence 35778999999999999999999999998877666543 56899999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccccccchHHHHHHHHHHHHhhHH
Q psy1676 234 KLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHNQ 298 (343)
Q Consensus 234 ~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s~~ep~~~~~~rI~~cl~l~~~ 298 (343)
.++++ ++++|..+++||.+|.|.|+|||++|+|+|..+.+ +++.++.|...|...+++=|.
T Consensus 368 lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~---~~~~l~~W~~~i~~l~~~v~k 428 (445)
T 4b4t_P 368 LLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN---SSQLLNEWSHNVDELLEHIET 428 (445)
T ss_dssp HHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC-----------------------------
T ss_pred HhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCC---hHHHHHHHHHHHHHHHHHHHH
Confidence 99995 99999999999999999999999999999987654 567899999999998777555
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.93 E-value=1.5e-23 Score=205.23 Aligned_cols=240 Identities=17% Similarity=0.181 Sum_probs=191.5
Q ss_pred hcccHHHHHHHHHHHHHHhhhcCCcchhH-HHHHHHHHHHHhhccHHHHHhhhhhc-----CCCCCCChHHHHHHHHHHH
Q psy1676 29 LTNNLDKVRSFLNARLRIATLRNDFEGQA-VLINCLLRNYLHYNLYDQADKLVKKS-----AFPENASNNEWARFHFYLG 102 (343)
Q Consensus 29 ~~~~~~~~~~~l~~~~r~a~~~~~~~~~~-~l~n~Llr~yl~~~~~~~a~~li~k~-----~~p~~~~~~~~~~Y~YY~G 102 (343)
-.+...++-..+....+-+. +.|..... -+.-+..+.|+..+++..++..+.++ .++ .++.-+..+..++|
T Consensus 111 ~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i~~~~G 187 (394)
T 3txn_A 111 DTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQGALDLQSG 187 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHHHHHhh
Confidence 34455555554544334332 22322222 44556679999999999999888754 222 34568899999999
Q ss_pred HHHH-HhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhHhH----hhhhhhhHHHHHHH
Q psy1676 103 RIKA-VRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVL----RRALSPYFQLTQAV 176 (343)
Q Consensus 103 ri~~-~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~~l----~~~l~~Y~~L~~Av 176 (343)
.+++ .+++|.+|+.+|..|++..+.. .......++||+++|.|+++..++. +++.++.. .+.+.+|.+|+.|+
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~-~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~ 266 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSV-DSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS 266 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHH
Confidence 9999 8999999999999999854332 2334677889999999999997774 34444422 24577899999999
Q ss_pred HhCCHHHHHHHHHhccccccccccH-HHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCC
Q psy1676 177 RMGELQKFNEVLTTYGNQFRTDYTF-KLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGV 255 (343)
Q Consensus 177 ~~Gdl~~f~~~l~~~~~~f~~d~~~-~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~ 255 (343)
..||+..|.++++.|+..|..|+.+ ..+..|+..++.++++++..+|++|++++||+.+++ +++++|..|++||.+|.
T Consensus 267 ~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l-s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 267 HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQL-PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCc-CHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999876 468999999999999999999999999999999999 59999999999999999
Q ss_pred ceEEeeCCCceEEEccCc
Q psy1676 256 IEATLDREKGYMQSKESA 273 (343)
Q Consensus 256 I~a~Id~~~g~v~~~~~~ 273 (343)
|+|+||+++|+|.+.++.
T Consensus 346 I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 346 FSGILDQGEGVLIVFEET 363 (394)
T ss_dssp SCEEEETTTTEEEECCC-
T ss_pred eeEEEcCCCCEEEECCCc
Confidence 999999999999998753
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.6e-20 Score=178.67 Aligned_cols=259 Identities=14% Similarity=0.181 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCC-CCC
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPE-NAS 90 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~-~~~ 90 (343)
.+.++++..++.+++-.|...++...+...++......++.....+.+.+.++|+..++|..|..+++++. .+. ..+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 45688999999999999999999999988888766666777777888888999999999999999988651 111 124
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc---cchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhH-----h
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ---TAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQA-----V 161 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~---~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~-----~ 161 (343)
......++.++|.++..+++|.+|..+|..|+...+. ...........++.+++.++.+..... ..+..+ .
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 291 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETY 291 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHh
Confidence 5678899999999999999999999999999983221 111222444666777776665542221 111110 0
Q ss_pred HhhhhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccH-HHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCH
Q psy1676 162 LRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF-KLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESP 240 (343)
Q Consensus 162 l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~-~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~ 240 (343)
......++..++.++..+++..|...+..+...+..|+.. ..+..+...+..++++.+..+|++|+++++|..++++ +
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~ 370 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-T 370 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-H
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-H
Confidence 0123557889999999999999999999999999888765 6789999999999999999999999999999999995 9
Q ss_pred HHHHHHHHHhHHcCCceEEeeCCCceEEEccCc
Q psy1676 241 EDAEFIIAKAIRDGVIEATLDREKGYMQSKESA 273 (343)
Q Consensus 241 ~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~ 273 (343)
+++|..|++||.+|.|.|+||+.+|+|.+.+..
T Consensus 371 ~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~ 403 (434)
T 4b4t_Q 371 QQVEGKLSQMILDKIFYGVLDQGNGWLYVYETP 403 (434)
T ss_dssp HHHHHHHHHHHHHTSSCCEEETTTTEEECC---
T ss_pred HHHHHHHHHHHhCCCcceecccccCeEeeCCCc
Confidence 999999999999999999999999999987654
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-16 Score=158.14 Aligned_cols=248 Identities=14% Similarity=0.148 Sum_probs=175.8
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHHHHHHHH
Q psy1676 22 YHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHF 99 (343)
Q Consensus 22 y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~~~~Y~Y 99 (343)
-++..+...|.++.+...+-. +|.-|.. ... ..-+.-.++|+|+..+++..+...++++. +........+.+|..
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~-~~~~~~~-~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGK-SLSKAIS-TGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHH-HHHHHTC-CCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHhcCC-hHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344555556666666665544 3433322 122 22344445899999999999999999762 222223456789999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC--hhhhhhHhH------hhhhhhhHH
Q psy1676 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD--RQIFRQAVL------RRALSPYFQ 171 (343)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~--~~~~~~~~l------~~~l~~Y~~ 171 (343)
|.|++++..++|.+|..+|..++.......... ...+.+|.+++.++...-.+ ..++..+.+ .+.+.++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~-~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~ 291 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIELTS-YESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISS 291 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHH-HHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCccchhh-HHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHH
Confidence 999999999999999999999998544332233 44566777777777544211 112222222 123556778
Q ss_pred HHHHHHhCCHHHHHH-HHHhccccccccccH-HHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHH
Q psy1676 172 LTQAVRMGELQKFNE-VLTTYGNQFRTDYTF-KLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAK 249 (343)
Q Consensus 172 L~~Av~~Gdl~~f~~-~l~~~~~~f~~d~~~-~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~ 249 (343)
++.++-.++...|-+ .++.+...+..|... ..+..+...+..+++..+..+|++|+++.+|+.+|++ ++++|..+++
T Consensus 292 l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~ 370 (429)
T 4b4t_R 292 LTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGK 370 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHH
Confidence 899988888888655 455566555555433 4577777888888999999999999999999999995 9999999999
Q ss_pred hHHcCCceEEeeCCCceEEEccCcc
Q psy1676 250 AIRDGVIEATLDREKGYMQSKESAD 274 (343)
Q Consensus 250 lI~~G~I~a~Id~~~g~v~~~~~~~ 274 (343)
||.+|.|+|+||+.+|+|.+.++..
T Consensus 371 lI~~g~l~akID~~~giv~~~~~d~ 395 (429)
T 4b4t_R 371 FIPNKQLNCVIDRVNGIVETNRPDN 395 (429)
T ss_dssp HHHHTSSCEEEETTTTEEEECC---
T ss_pred HHHcCCeEEEEcCCCCEEEECCCCc
Confidence 9999999999999999999987543
No 8
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.1e-17 Score=158.28 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=153.0
Q ss_pred hHHHHHHHHHHHHhhccHHHHHhhhhhcC--C--CCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC-cc-c
Q psy1676 56 QAVLINCLLRNYLHYNLYDQADKLVKKSA--F--PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP-QT-A 129 (343)
Q Consensus 56 ~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~--p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~-~~-s 129 (343)
...+...+.+.|+..|+.+.|+.+++++. + .......-...|++..|.++...++|..++.+...++...+ .. .
T Consensus 126 ~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~ 205 (393)
T 4b4t_O 126 ILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSI 205 (393)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccC
Confidence 34666678999999999999999999762 1 12234457788888899999999999999999988887322 11 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC-hhhhhhHhHh-----hhhhhhHHHHHHHHhCCHHHHHHHHHhccccc--cccccH
Q psy1676 130 AVGFRQTTQKLAVVVELLLGDIPD-RQIFRQAVLR-----RALSPYFQLTQAVRMGELQKFNEVLTTYGNQF--RTDYTF 201 (343)
Q Consensus 130 a~~~~~~i~K~li~v~LL~G~iP~-~~~~~~~~l~-----~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f--~~d~~~ 201 (343)
....+......++++.++...++. ..++..|.++ ....++.+|.++|..||+..|.+.++.|...+ ...+.-
T Consensus 206 ~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~ 285 (393)
T 4b4t_O 206 TLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHES 285 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHH
Confidence 123234444444444444445777 4566666543 23567899999999999999999887775433 222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccC-cccccc
Q psy1676 202 KLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES-ADIYCT 278 (343)
Q Consensus 202 ~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~-~~v~s~ 278 (343)
.+.+++|...+-.++ ....|.+||+++|++.++++ +++||.+|++||.+|.|+|+|||.+|+|.+.+. +.+++.
T Consensus 286 ~l~~kirll~l~~l~--~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~ 360 (393)
T 4b4t_O 286 FLRQKICLMTLIETV--FVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISG 360 (393)
T ss_dssp HHHHHHHHHHHHHHH--CSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSSCEETTTTEECC----------
T ss_pred HHHHHHHHHHHHHHh--ccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCH
Confidence 444555544443322 12367899999999999995 999999999999999999999999999999763 344443
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.55 E-value=8.5e-14 Score=126.77 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=143.8
Q ss_pred HHHHHhhccHHHHHhhhhhc--------CCCCCCChH--HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc--chH
Q psy1676 64 LRNYLHYNLYDQADKLVKKS--------AFPENASNN--EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT--AAV 131 (343)
Q Consensus 64 lr~yl~~~~~~~a~~li~k~--------~~p~~~~~~--~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~--sa~ 131 (343)
++.++..++|+.|..+++++ .+|+..+++ +.+++-|+.|.+.+.+.++.+++..+...+++.+.. ...
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s 93 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPS 93 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCC
Confidence 67778999999999999964 355555544 578999999999999999999999999999954332 123
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhhhhhHh-----H--hhhhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccHHHH
Q psy1676 132 GFRQTTQKLAVVVELLLGDIPDRQIFRQAV-----L--RRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLI 204 (343)
Q Consensus 132 ~~~~~i~K~li~v~LL~G~iP~~~~~~~~~-----l--~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv 204 (343)
++...+..|-|+..|.+|++|+...+.... + .+.+.+..++.+|+..||..+|-+..++..... ...++
T Consensus 94 ~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~----~~~~~ 169 (229)
T 4b0z_A 94 SRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPE----FSYFM 169 (229)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGG----GHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccch----HHHHH
Confidence 467778889999999999988854432211 1 123556778999999999999999988754321 12467
Q ss_pred HHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHH
Q psy1676 205 LRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAK 249 (343)
Q Consensus 205 ~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~ 249 (343)
..+...+....++.+.++|++||++++++.|+++|+++++.++.+
T Consensus 170 ~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 170 KIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 777888888888999999999999999999999999999999987
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.32 E-value=2.5e-12 Score=98.85 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 206 RLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 206 ~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
.|+..+++++++.+++.|++|+++.+|+.++++ ++++|.++++||.+|.|.|+|||++|+|.|.+
T Consensus 11 ~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp CCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCC
Confidence 355788999999999999999999999999996 99999999999999999999999999999975
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.89 E-value=3.8e-08 Score=85.21 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=93.1
Q ss_pred HHHHHhcCCCCC-hhhhhhHhHhh----hhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHH
Q psy1676 142 VVVELLLGDIPD-RQIFRQAVLRR----ALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAI 216 (343)
Q Consensus 142 i~v~LL~G~iP~-~~~~~~~~l~~----~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~i 216 (343)
++..+..-.+-. ..++..|.++. ...+|.+|.++|..|++..|.+.-+.+- .+. =.+.+++|...+-.+.
T Consensus 30 i~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~p-~L~----~~~~~KlrlLtL~sLa 104 (169)
T 3chm_A 30 IIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLP-HLS----PDQILKLKQLTVLTLA 104 (169)
T ss_dssp HHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGSC-CCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhCc-chH----HHHHHHHHHHHHHHHH
Confidence 333444333444 45666665432 2457999999999999999998654332 222 2456677776665554
Q ss_pred HHHhhcccccChHHHHHHhCCCCHHHHHHHHH-HhHHcCCceEEeeCCCceEEEcc-Cccccc
Q psy1676 217 RSIGASYSRITPTKIAEKLGLESPEDAEFIIA-KAIRDGVIEATLDREKGYMQSKE-SADIYC 277 (343)
Q Consensus 217 r~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila-~lI~~G~I~a~Id~~~g~v~~~~-~~~v~s 277 (343)
-+ ...||+++|++.+++++.+|+|.+|. ++|+.|.|+|+|||.++.|...+ .+.++.
T Consensus 105 ~~----~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~l~ 163 (169)
T 3chm_A 105 ES----NKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLR 163 (169)
T ss_dssp HH----CSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTTCC
T ss_pred Hh----CCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCccC
Confidence 32 68999999999999988999999999 99999999999999999999876 344444
No 12
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.95 E-value=0.0004 Score=63.50 Aligned_cols=194 Identities=14% Similarity=0.089 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhh-ccHHHHHhhhhhc--CCCCCCChH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY-NLYDQADKLVKKS--AFPENASNN 92 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~-~~~~~a~~li~k~--~~p~~~~~~ 92 (343)
.+.+|.-.+.++...|..+++...+-.++......++..+.+...+.+-.+|... ++++.|.....++ ..|......
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 4788899999999999999998888888876665566666677777788999995 9999999998865 233322233
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHH-HHHHHHHHHHHHHHhcCCCCCh-hhhh-----hHhHhh-
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVG-FRQTTQKLAVVVELLLGDIPDR-QIFR-----QAVLRR- 164 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~-~~~~i~K~li~v~LL~G~iP~~-~~~~-----~~~l~~- 164 (343)
.....+.-.|.++...++|.+|..+|..++...|...... ....+...+..+.+.+|+.... ..+. .|.+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 4455677889999999999999999999999666542111 1122233344556667875441 1111 121111
Q ss_pred -hhhhhHHHHHHHHhCCHHHHHHHHHhccccccccccH-HHHHHHHH
Q psy1676 165 -ALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF-KLILRLRH 209 (343)
Q Consensus 165 -~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~-~Lv~~l~~ 209 (343)
...-+..+..++..||...|.+.+..+.....-|+.+ .++.+++.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 1123456788999999999999999997766666654 33444443
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.87 E-value=0.00036 Score=55.46 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
...+.+++..+.++-..+...++...+..++..+....++.......+.+-.+|+..++++.|...+.+. ..+.....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 3567889999999999999999999888888776666677777777888899999999999999998865 12222334
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
......++..|.++...++|.+|..++..|+..+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999999999843
No 14
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.50 E-value=0.0014 Score=60.21 Aligned_cols=170 Identities=11% Similarity=0.017 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
++.+|.-.+.++...+...++...+..++......+++...+...+.+-.+|.. ++++.|.....++ .+|.......
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 466777777888877877777777777766555445555556666667788888 9999998888765 2232223344
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhh----hhHhHh--hhh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIF----RQAVLR--RAL 166 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~----~~~~l~--~~l 166 (343)
....++-.|.++...++|.+|..+|..|+...+..........+..-+..+.+.+|+.... ..+ ..|... ...
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~ 233 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHH
Confidence 5667778899999999999999999999985443211111111222333444555764331 111 111111 111
Q ss_pred hhhHHHHHHHHhCCHHHHHH
Q psy1676 167 SPYFQLTQAVRMGELQKFNE 186 (343)
Q Consensus 167 ~~Y~~L~~Av~~Gdl~~f~~ 186 (343)
.....+..++..||...|..
T Consensus 234 ~~l~~l~~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH
Confidence 22446778888899888888
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.41 E-value=0.0023 Score=50.58 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChH
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~ 92 (343)
..+.+++..+.++-..+...++...+..++..+....++.....+...+-.+|+..++++.|...+.+.. .+......
T Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 4467899999999999999999999888887665555666666677778899999999999999988651 12222345
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
.....++..|.++...+++.+|..++..|+..+
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 667778899999999999999999999999843
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.38 E-value=0.0052 Score=57.61 Aligned_cols=140 Identities=11% Similarity=0.020 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC-
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS- 90 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~- 90 (343)
.+..-.+|+.+..+-..|...++...+..++..+....++...+.+.+.+-..|...++++.|...+.++ .++....
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 3445567778888999999999998888877755555566667778888899999999999999998875 2333222
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
....+.-++..|.++...++|.+|..+|..|+..++..........+...+-.+...+|+...
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 456677788999999999999999999999998544321111122233334344445666443
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.36 E-value=0.0046 Score=58.05 Aligned_cols=144 Identities=11% Similarity=0.001 Sum_probs=101.0
Q ss_pred chhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCC
Q psy1676 10 RTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPE 87 (343)
Q Consensus 10 ~~~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~ 87 (343)
..-+.+....+|+.+..+-..|...++...+..++..+....++...+.+.+.+-.+|...++++.|...+.++ .++.
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 33445666677788888888999999998888877755555566667777888899999999999999998865 2333
Q ss_pred CCC-hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 88 NAS-NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 88 ~~~-~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
... ....+.-++..|.++...++|.+|..+|..|+..++..........+...+-.+...+|+...
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 222 345677788999999999999999999999998443221111122233334344455666444
No 18
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.35 E-value=0.0041 Score=51.99 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CC-CCCC-Ch
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AF-PENA-SN 91 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~-p~~~-~~ 91 (343)
..+.+++..+.++-..+....+...+..++..+...+++.......+.+-.+|...++++.|...+.+. .. .... ..
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 467889999999999999999999998888877666677777777888899999999999999998864 11 1111 23
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
......++..|.++...++|.+|..++..|+..+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3567778899999999999999999999999743
No 19
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.31 E-value=0.0034 Score=55.92 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
...+.+++..+.++...+..+.+...+..++..+....++.........+..+|+..++++.|...+.+. ..+.....
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 4456788999999999999999988888888766555556666667777889999999999999998865 12222234
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
......++..|.++...++|.+|..+|..|+...+
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 56677788999999999999999999999998543
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.25 E-value=0.017 Score=51.32 Aligned_cols=111 Identities=19% Similarity=0.055 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhcc--------------------HH
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNL--------------------YD 74 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~--------------------~~ 74 (343)
..+.+++..+.++...|....+...+..++.......++.........+-.+|...++ ++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 4466677777777777777777766666665544444444455555666677777777 77
Q ss_pred HHHhhhhhcC--CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 75 QADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 75 ~a~~li~k~~--~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
.|...+.+.. .+...........++..|.++...++|.+|..++..++..+
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7766665431 11111234455566677777777777777777777777643
No 21
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.0042 Score=57.48 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
+...+.+++..+.++...+...++...+..++.......++.........+-.+|+..++++.|...+.+. ..|....
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 45566677777777777777777777777776666666666666666666667777777777777666653 1222223
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
.......++..|.++...++|.+|..+|..|+..
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777776663
No 22
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.21 E-value=0.0054 Score=51.23 Aligned_cols=113 Identities=13% Similarity=0.035 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcC-CcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN-DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~-~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~ 89 (343)
+...+.+++..+.++...+..+.+...+..+++.+.... ++.......+.+-.+|+..++++.|...+.+.. .+...
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 456788899999999999999999999988888766444 333566777788999999999999999988651 12112
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
.......-+...|.++...++|.+|..+|..|+..+
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 234556667889999999999999999999999844
No 23
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.20 E-value=0.0052 Score=56.83 Aligned_cols=160 Identities=15% Similarity=0.021 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHH
Q psy1676 35 KVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYS 112 (343)
Q Consensus 35 ~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~ 112 (343)
.+...+..++..+....++.......+.+-.+|...|+++.|...+.+. ..|...........++..|.++...++|.
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 3334444444444445666777777888899999999999999998865 22333344567778889999999999999
Q ss_pred HHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhh-----HhH---hhhhhhhHHHHHHH-HhCCHH
Q psy1676 113 TAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-----AVL---RRALSPYFQLTQAV-RMGELQ 182 (343)
Q Consensus 113 ~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~-----~~l---~~~l~~Y~~L~~Av-~~Gdl~ 182 (343)
+|..+|..|+...+..........+...+--+....|+.... ..+.. +.. ......|..++.++ ..|+..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999984333211222334444555566677775552 11110 000 01123455666665 468866
Q ss_pred HHHHHHHhcccc
Q psy1676 183 KFNEVLTTYGNQ 194 (343)
Q Consensus 183 ~f~~~l~~~~~~ 194 (343)
.-...+++.-..
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555544333
No 24
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.12 E-value=0.0069 Score=56.79 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCC-cchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND-FEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA 89 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~-~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~ 89 (343)
+.-.|.+|+..+.++...+....+...+..++.......+ ....+...+.+-.+|...|+++.|...+.++ ..|...
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 3457899999999999999999999998888886655544 4556677788899999999999999998865 123222
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
.......-++..|.++...++|.+|..+|..|+.-
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999983
No 25
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.12 E-value=0.006 Score=57.08 Aligned_cols=113 Identities=17% Similarity=0.088 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
...+.+++..+.++...+..+.+...+..+++......++.........+..+|+..++++.|...+.+. ..+.....
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 3456688999999999999999998888888766555555566667778899999999999999998865 22222334
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
......++..|.++...++|.+|..+|..|+..++
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999999988543
No 26
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.08 E-value=0.021 Score=53.34 Aligned_cols=114 Identities=15% Similarity=0.065 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhcc-----------------HHH
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNL-----------------YDQ 75 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~-----------------~~~ 75 (343)
+...+.+++..+.++...|....+...+..++..+....++.......+.+-.+|...++ ++.
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 455667788888888888888877777777666554444555555666667788888888 777
Q ss_pred HHhhhhhc-C-CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 76 ADKLVKKS-A-FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 76 a~~li~k~-~-~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
|...+.+. . .+...........++..|.++...++|.+|..+|..|+..++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 77776653 1 111112345566777888888888888888888888887544
No 27
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.00 E-value=0.06 Score=40.64 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC
Q psy1676 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA 89 (343)
Q Consensus 12 ~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~ 89 (343)
.|.-.+.+++..+..+...+....+...+-.++.. ++.. ......+..+|+..++++.|...+.+. ..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 78 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-- 78 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--
Confidence 45667788999999999999998888777665543 2222 344556688899999999999998865 2332
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..++...|..
T Consensus 79 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 79 ----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 13457899999999999999999999999976653
No 28
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.95 E-value=0.021 Score=43.37 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCC-CChH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPEN-ASNN 92 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~-~~~~ 92 (343)
.+.+|+..+..+-..+....+...+..++.. ++.. ..+...+..+|+..++++.|...+.+. ..|.. ....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4677889999999999999888877766553 2222 344556688899999999999998865 12221 1223
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
.....++..|.++...++|.+|..+|..++...|
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3467788999999999999999999999999665
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.86 E-value=0.016 Score=54.37 Aligned_cols=112 Identities=12% Similarity=-0.012 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCC-cchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND-FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~-~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~ 89 (343)
+...|.+++..+.++-..+....+...+..++.......+ +...+...+.+-.+|...++++.|...+.++. .+...
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999999998888888776554443 34566777788999999999999999888651 12112
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
........++..|.++...++|.+|..+|..|+..
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33466777889999999999999999999999983
No 30
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.82 E-value=0.014 Score=52.90 Aligned_cols=108 Identities=8% Similarity=0.042 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC-----CCCCCC
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-----FPENAS 90 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~-----~p~~~~ 90 (343)
.+..+++.+..+...+..+++...+..++..+....++.+...+.+.+-.+|...++|+.|...+.++. .|. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~ 191 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N 191 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--C
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--c
Confidence 445577788888888888888877777665444444566666778888999999999999999988652 232 2
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
....+..++..|.++..+++|.+|..++..|+..+
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22334678899999999999999999999999843
No 31
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.61 E-value=0.069 Score=44.92 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC----
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA---- 89 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~---- 89 (343)
.+.+|+..+.++...+...++...+..+++. ++.. ......+-.+|+..++++.|...++++ ..|...
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 109 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHL-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence 4678888999999899988888777665543 2222 334455678899999999999988865 344322
Q ss_pred ------ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 90 ------SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 90 ------~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
........++..|.++...++|.+|..+|..|+...|..
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 223455678899999999999999999999999976654
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.16 Score=43.36 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcC-CcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-C-CCCCC----
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN-DFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-A-FPENA---- 89 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~-~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~-~p~~~---- 89 (343)
+.+|+..+.++...+...++...+..++....... +......+...+..+|...++++.|...+.+. . .|...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 45678888888888888888777766665332221 11222455666778888888888888887764 1 12100
Q ss_pred ----------------ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 90 ----------------SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 90 ----------------~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..+.....++..|.++...++|.+|..+|..++...|..
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 123455667788888888888888888888888866543
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.049 Score=48.12 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcC--CcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC-C-CCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN--DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PEN 88 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~--~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~-~-p~~ 88 (343)
|+-.+.+++..+.++...+..+.+...+-.++..+.... +..........+-.+|...++++.|...+.+.. . ...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999988888777554433 344455667778899999999999999988651 1 000
Q ss_pred --CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 89 --ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 89 --~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
.........++..|.++...++|.+|..+|..++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 123567778889999999999999999999999984
No 34
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.51 E-value=0.067 Score=43.58 Aligned_cols=103 Identities=10% Similarity=0.072 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
.-.+..|+..+.++...+....+...+..+++. ++.. ..+...+-.+|+..++|+.|...+.+. ..|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---- 77 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---- 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Confidence 345778899999999999999888777666553 2332 345556688999999999999999875 2232
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....+|..|.++...++|.+|..+|..++...|..
T Consensus 78 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 78 --YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 25668899999999999999999999999965554
No 35
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.43 E-value=0.02 Score=51.69 Aligned_cols=108 Identities=10% Similarity=-0.076 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhc-CCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR-NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~-~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~ 92 (343)
.+.+|...+.++...+..+.+...+..++...... .++.....+.+.+-.+|++.++|+.|...+.++. .+......
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 35567777777777777777777776666544332 3444444556666778888888888887777541 11111223
Q ss_pred HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHh
Q psy1676 93 EWARFHFYLGRIKAVRL-EYSTAHKNLVQALR 123 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~-~y~~A~~~L~~A~~ 123 (343)
.....++..|.++...+ +|.+|..++..|+.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45666777888888777 46888888888776
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.41 E-value=0.022 Score=45.24 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-C-CCCCC
Q psy1676 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-A-FPENA 89 (343)
Q Consensus 12 ~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~-~p~~~ 89 (343)
+|+=.|..++=.+.++-..|...++...+-.++.. +|.. ..+...+-.+|++.++++.|...++++ . -|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-- 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--
Confidence 56777888888888888899998888777655542 3433 334445578899999999999998875 2 222
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..|+...|..
T Consensus 80 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 80 ----FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 24457899999999999999999999999976654
No 37
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.41 E-value=0.028 Score=50.81 Aligned_cols=104 Identities=8% Similarity=-0.010 Sum_probs=78.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCC-CChHHHHHHHH
Q psy1676 23 HSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPEN-ASNNEWARFHF 99 (343)
Q Consensus 23 ~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~-~~~~~~~~Y~Y 99 (343)
.+..+-..+...++...+..++.......+..+...+.+.+-.+|...++|+.|.....++. +... ......+..++
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 56666666677888777777666333334444556678888999999999999999988752 1111 24567788899
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 100 YLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
..|.++..+++|.+|..++..|+..++
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998543
No 38
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.39 E-value=0.087 Score=42.83 Aligned_cols=103 Identities=13% Similarity=-0.000 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
|+=.+..+|..+.++...|+..++...+-.++.. +|.. ......+-.+|...++++.|...++++ ..|..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 88 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-- 88 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence 4445667888999999999998888766544432 3333 233445678899999999999999875 23431
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
...+|+.|.++...+++.+|..+|..|+...|.
T Consensus 89 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 ----PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 235688999999999999999999999995554
No 39
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.38 E-value=0.09 Score=43.45 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
|+=.+.++|-.+.++-..|+.+++...+-.++.. +|.... ....+-.+|...++|+.|...+++. ..|.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~-~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-- 103 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVD-YIMGLAAIYQIKEQFQQAADLYAVAFALGKND-- 103 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC--
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC--
Confidence 4445667889999999999999888776554432 343333 3444578899999999999999876 23432
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...+|..|.++...++|.+|..+|..|+..+|..
T Consensus 104 ----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 104 ----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp ----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 2357899999999999999999999999977754
No 40
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.38 E-value=0.047 Score=49.85 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.++.-.+.+++. +..+.+...+..++.......++.......+.+-.+|.+.++|+.|...+.++ ..|.......
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 57889999999999 99998888887777655444444455567777899999999999999998865 2232222334
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
...+++-.|.++...++|.+|..+|..++ ..|.
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 56677888899999999999999999999 6664
No 41
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.38 E-value=0.19 Score=37.32 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~ 93 (343)
.+.+|+..+.++...+..+.+...+..+++. ++.. ......+..+|...++++.|...+++.. .|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------ 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------ 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------
Confidence 3678999999999999999988877766553 2222 3455566889999999999999988652 232
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...+++.+|..+|..++...|..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 13456788999999999999999999999976654
No 42
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.31 E-value=0.025 Score=51.14 Aligned_cols=109 Identities=10% Similarity=-0.082 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhH-HHHHHHHHHHHhhccHHHHHhhhhhcC-C-CCCCChH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQA-VLINCLLRNYLHYNLYDQADKLVKKSA-F-PENASNN 92 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~-~l~n~Llr~yl~~~~~~~a~~li~k~~-~-p~~~~~~ 92 (343)
.+.+|+..+.++...+..+.+...+..++.......+..... .+.+.+-.+|+..++|+.|...+.++. + +......
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 477899999999999999999988888886544443333323 566677899999999999999998651 1 1111222
Q ss_pred HHHHHHHHHHHHHHHhhCHHHH-HHHHHHHHhh
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTA-HKNLVQALRK 124 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A-~~~L~~A~~~ 124 (343)
.....++..|.++...+++.+| ..+|..|+.-
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567789999999999999999 8889999873
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.31 E-value=0.047 Score=46.80 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC-ChHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA-SNNEW 94 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~-~~~~~ 94 (343)
.++|+.+.++...+...++...+..+++ .+|. .......+-.+|...++++.|...+++. ..|... .....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIK-----KNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHH-----hCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4556666666666666665554443332 1222 2233444566667777777777666654 233311 11234
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
+..++..|.++...++|.+|..+|..|+...|.
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 456667777777777777777777777765443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.30 E-value=0.42 Score=40.88 Aligned_cols=102 Identities=18% Similarity=0.060 Sum_probs=62.6
Q ss_pred chhHHHH-HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCC
Q psy1676 10 RTSDLIA-AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFP 86 (343)
Q Consensus 10 ~~~d~~~-a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p 86 (343)
+..|+-. +.+|+..+.++...+..+.+...+..++.. ++.. ......+..+|+..++++.|...+.+. ..|
T Consensus 29 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3444444 677777788777777777776666554442 1211 234445566777777777777777654 222
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 87 ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 87 ~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
. ....++..|.++...++|.+|..+|..++.
T Consensus 103 ~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 103 R------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred C------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2 123455667777777777777777777776
No 45
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.23 E-value=0.067 Score=48.43 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWA 95 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~ 95 (343)
..|-.-+.++...+...++...+..++......+++...+...+.+-.+|...|+++.|...+.++ ..|........+
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344445667777888888888887777655545566666777778899999999999999988865 223222334556
Q ss_pred HHHHHHHHHHHHh-hCHHHHHHHHHHHHhhCC
Q psy1676 96 RFHFYLGRIKAVR-LEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 96 ~Y~YY~Gri~~~~-~~y~~A~~~L~~A~~~~~ 126 (343)
..+.-.|.++..+ ++|.+|..+|..|+...|
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 7788899999997 999999999999998544
No 46
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.23 E-value=0.15 Score=38.95 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchh--HHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQ--AVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~--~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
.+|..+.++-..+....+...+-..++. +|... ......+-.+|+..++++.|...+.+. ..|.+ ...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---ccc
Confidence 4677788888888988888777654442 22221 234445678899999999999998875 34432 123
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...+|..|.++...+++.+|...|..++...|..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 4567889999999999999999999999976654
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.22 E-value=0.054 Score=46.88 Aligned_cols=111 Identities=18% Similarity=0.094 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhc--CCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC-C-CC--
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR--NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PE-- 87 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~--~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~-~-p~-- 87 (343)
+-.+.+++..+.++...+....+...+..++..+... .++.......+.+-.+|...++++.|...+.++. . ..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 5668889999999999999999998888887765433 4444555677778999999999999999988651 1 00
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 88 NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 88 ~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
.......+..++..|.++...++|.+|..+|..++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0112466778889999999999999999999999985
No 48
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.22 E-value=0.035 Score=44.43 Aligned_cols=102 Identities=15% Similarity=0.027 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
|+=.+..+|..+..+...++..++...+-.+++. +|.. ......+-.+|...++++.|...+++. ..|..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 85 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-- 85 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence 3445567888888988999999888776554432 3333 233445578899999999999999875 22321
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
...+|..|.++...++|.+|..+|..++...|
T Consensus 86 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 86 ----PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 23467899999999999999999999998544
No 49
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.069 Score=49.21 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=92.4
Q ss_pred HHHHHhhccHHHHHhhhhhcC--------C-CCC-CCh----HH--HH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhhC-
Q psy1676 64 LRNYLHYNLYDQADKLVKKSA--------F-PEN-ASN----NE--WA-RFHFYLGRIKAVRLEYSTAHKNLVQALRKA- 125 (343)
Q Consensus 64 lr~yl~~~~~~~a~~li~k~~--------~-p~~-~~~----~~--~~-~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~- 125 (343)
++.-+..++|+.|..++++.. + |.. .+. ++ .+ .-+-..+++.+-.+|+.+-.++..+--...
T Consensus 11 l~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~ 90 (274)
T 4b4t_T 11 LSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYF 90 (274)
T ss_dssp --------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445567788999999888541 1 211 111 11 11 234467777777888876555555544311
Q ss_pred ---CccchHHHHHHHHHHHHHHHHhcCCCCChh------------hhhhHhHhhhhhhhHHHHHHHHhCCHHHHHHHHHh
Q psy1676 126 ---PQTAAVGFRQTTQKLAVVVELLLGDIPDRQ------------IFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTT 190 (343)
Q Consensus 126 ---~~~sa~~~~~~i~K~li~v~LL~G~iP~~~------------~~~~~~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~ 190 (343)
.......+.-.+.-|-++..|..|++++.. +..+|. ++.=..+-+++..||..+|=+...+
T Consensus 91 d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~----Ik~al~le~al~eGnY~kff~l~~~ 166 (274)
T 4b4t_T 91 SNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSL----LSYPIKLDRWLMEGSYQKAWDLLQS 166 (274)
T ss_dssp TTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHH----HHHHHHHHHHHHHTCSHHHHHHHHT
T ss_pred hhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChH----HHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 111112344555556666666677765521 112222 2222467889999998888776665
Q ss_pred ccccccccccH-HHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHH
Q psy1676 191 YGNQFRTDYTF-KLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAK 249 (343)
Q Consensus 191 ~~~~f~~d~~~-~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~ 249 (343)
.... ...| .++..+...+....++.+.++|.+||++++++.|+++|++|+...+..
T Consensus 167 ~~~p---~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 167 GSQN---ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp CTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred CCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 3210 1123 355666666666777888999999999999999999999998888754
No 50
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.13 E-value=0.092 Score=46.10 Aligned_cols=107 Identities=11% Similarity=0.054 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
.-.+..+|..+..+-..|+...+...+-..+... .+..........+-.+|++.++|+.|...+++. ..|.+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-- 86 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-- 86 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc--
Confidence 3345556666666666666666666665544421 001111223333455566666666666666654 234321
Q ss_pred HHHHHHHHHHHHHHHH--------hhCHHHHHHHHHHHHhhCC
Q psy1676 92 NEWARFHFYLGRIKAV--------RLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~--------~~~y~~A~~~L~~A~~~~~ 126 (343)
....-+|..|.++.. .++|.+|...|..++...|
T Consensus 87 -~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 87 -RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp -THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred -hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 122335566666666 6666666666666666444
No 51
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.12 Score=40.15 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcch--hHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEG--QAVLINCLLRNYLHYNLYDQADKLVKKS--AFPEN 88 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~--~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~ 88 (343)
+.-.+..++..+..+...+....+...+-.+++ .++.. ...+...+-.+|+..++++.|...+.+. ..|.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 97 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG- 97 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-
Confidence 344567788889999999999888876655443 23332 2455566688899999999999998865 2232
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 89 ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 89 ~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..++...|..
T Consensus 98 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 -----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 14567889999999999999999999999976654
No 52
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.09 E-value=0.14 Score=40.31 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCC-CChHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPEN-ASNNE 93 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~-~~~~~ 93 (343)
|..+.=.+.++-..+..+++....-.++.. +|... ...+.+-.+|++.++|+.|...+.++. .|.. .....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~-~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI-TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 455666777777888888888777665542 44443 344455889999999999999888651 2322 23345
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
...-++-.|.++...++|.+|..+|..|+...|.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5666788999999999999999999999985553
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.08 E-value=0.083 Score=46.56 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhc--CCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC-C-CC--
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR--NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PE-- 87 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~--~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~-~-p~-- 87 (343)
...+.+++..+.++...+...++...+..++...... .++.......+.+..+|...++++.|...+.+.. . ..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 5567889999999999999999998888777654332 3344455667778999999999999999988651 1 00
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 88 NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 88 ~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
..........++..|.++...++|.+|..+|..++..+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 01234667778899999999999999999999999843
No 54
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.05 E-value=0.2 Score=38.02 Aligned_cols=102 Identities=11% Similarity=-0.015 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChH
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNN 92 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~ 92 (343)
-....|+..+.++...+....+...+..+++ .++.. ..+...+..+|+..++++.|...+.+. ..|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK-----RNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-----TCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----
Confidence 4466788889998889998888877765544 23332 344556678899999999999998865 2332
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..++...|..
T Consensus 83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 23467889999999999999999999999976653
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.16 Score=37.47 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
+..++..+..+...+...++...+-.++.. +|.. ......+-.+|+..++++.|...+++. ..|. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------W 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------c
Confidence 567888888888899998888777665542 2222 334555678899999999999998865 2332 2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++...++|.+|..+|..++...|..
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 3457788999999999999999999999976654
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.00 E-value=0.36 Score=38.49 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+..|+..+.++...+....+...+-..+. .++.. ......+...|+..++++.|...+++. ..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------ 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD-----ADAFD-VDVALHLGIAYVKTGAVDRGTELLERSLADAPD------ 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC-----TTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCccC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Confidence 456677778888888888777766544332 22222 344455677888888888888888764 2232
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
....++..|.++...++|.+|..++..++...|.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH
Confidence 1234567788888888888888888888886554
No 57
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.078 Score=49.84 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=74.8
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHH
Q psy1676 21 FYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFH 98 (343)
Q Consensus 21 ~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~ 98 (343)
--.+.++...+..+.+......++..+....+....+.+...|.++|+..|+|..|..++... ...........+.++
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 334444455555555555555544444444455556677778899999999999999999864 122223456788999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 99 FYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 99 YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
...|+++...++|.+|...+..|...
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999874
No 58
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.97 E-value=0.24 Score=41.53 Aligned_cols=107 Identities=15% Similarity=0.026 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchh----------HHHHHHHHHHHHhhccHHHHHhhhhhc--
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQ----------AVLINCLLRNYLHYNLYDQADKLVKKS-- 83 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~----------~~l~n~Llr~yl~~~~~~~a~~li~k~-- 83 (343)
.+..++-.+..+...+....+...+..+++..-...+.... ..+...+-.+|+..++++.|...+.++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45668888888888899988887776665522111111111 245566788999999999999998865
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 84 AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 84 ~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..| .....+|..|.++...++|.+|..+|..|+...|..
T Consensus 117 ~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 117 IDK------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HST------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hCc------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 223 224568899999999999999999999999976654
No 59
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.96 E-value=0.13 Score=44.37 Aligned_cols=112 Identities=10% Similarity=0.011 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcC--CcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CC-CC-
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN--DFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AF-PE- 87 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~--~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~-p~- 87 (343)
++..+.+++.++.++...+...++...+..++....... +..........+-.+|+..++++.|...+.+. .. ..
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 356788899999999999999999988888776543322 22334456666789999999999999998865 11 00
Q ss_pred -CCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 88 -NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 88 -~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
..........++..|.++...++|.+|..+|..++..
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0123456777889999999999999999999999984
No 60
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.22 Score=38.25 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.|..|+-.+..+-..+...++...+-.+++. +|.. ..+...+-.+|++.++++.|...++++ ..|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------ 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence 3567888888888899998888777665553 2332 345555688899999999999998875 2332
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
....++..|.++...++|.+|..+|..++...
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 24567889999999999999999999999955
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.86 E-value=0.47 Score=41.42 Aligned_cols=109 Identities=14% Similarity=0.036 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHh--------hccHHHHHhhhhhc--CC
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH--------YNLYDQADKLVKKS--AF 85 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~--------~~~~~~a~~li~k~--~~ 85 (343)
.+.++|..+.++...+....+...+-..++.. .+..........+-.+|+. .++++.|...+++. .+
T Consensus 51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 51 AADAQFYLARAYYQNKEYLLAASEYERFIQIY---QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 36677777777777777777776665444321 1111122333445667777 77777777777765 45
Q ss_pred CCCCChHHHHHHH-----------HHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 86 PENASNNEWARFH-----------FYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 86 p~~~~~~~~~~Y~-----------YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
|.+........+. |..|.++...++|.+|...|..++...|.
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6543333333334 67777777777777777777777775554
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.86 E-value=0.32 Score=41.63 Aligned_cols=163 Identities=10% Similarity=-0.021 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWA 95 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~ 95 (343)
.+.+++..+.++...+....+...+..++.. ++.. ..+...+..+|+..++++.|...+.+..-.. ......
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 141 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRN-ARVLNNYGGFLYEQKRYEEAYQRLLEASQDT--LYPERS 141 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT--TCTTHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc-HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc--cCcccH
Confidence 4678999999999999999998887766553 2222 3455566888999999999999998763311 112345
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhHhHh---hhhhhhHH
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLR---RALSPYFQ 171 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~~l~---~~l~~Y~~ 171 (343)
..++..|.++...+++.+|..+|..++...|... . +...+.-+....|+.... ..+.. .+. .....+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-----~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~ 214 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP-S-----VALEMADLLYKEREYVPARQYYDL-FAQGGGQNARSLLL 214 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-H-----HHHHHHHHHHHTTCHHHHHHHHHH-HHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH-H-----HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCcHHHHHH
Confidence 5677889999999999999999999999766531 1 112222333445664441 11111 110 11223444
Q ss_pred HHHHH-HhCCHHHHHHHHHhccc
Q psy1676 172 LTQAV-RMGELQKFNEVLTTYGN 193 (343)
Q Consensus 172 L~~Av-~~Gdl~~f~~~l~~~~~ 193 (343)
++.+. ..|+...-...+++...
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 55544 56887766666555433
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.77 E-value=0.75 Score=38.74 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+++..+.++...+....+...+-.++.. ++. .......+..+|...++++.|...+.+. ..|..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----- 124 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALEL-----DSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----- 124 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----
Confidence 3567777788888888877777666554442 121 2344455677788888888888887764 22321
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
...++..|.++...++|.+|...+..++...|.
T Consensus 125 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 125 -GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 234566788888888888888888888876554
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.74 E-value=0.17 Score=37.90 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWA 95 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~ 95 (343)
.+|+..+.++...+..+++...+-..+.. ++.. ......+..+|...++++.|...+.+. ..|. ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence 46788888888889988888777655542 2222 234455688899999999999998865 2232 12
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
..++..|.++...++|.+|...|..++...|.
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34667899999999999999999999986654
No 65
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.73 E-value=0.097 Score=40.57 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
.-.+..|+..+.++-..+....+...+..++.. ++.. ..+...+-.+|+..++++.|...+.+. ..|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---- 75 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---- 75 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----
Confidence 345678899999999999998888777665553 2322 345556688899999999999998865 2332
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
....++..|.++...++|.+|..+|..|+...|.
T Consensus 76 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 --SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2456788999999999999999999999985443
No 66
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.66 E-value=0.25 Score=37.03 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
..+++..+.++...+..+.+...+-.++.. ++.. ......+..+|...++++.|...+... ..|..
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 102 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------ 102 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence 456777888888888888888776655442 1222 234456688999999999999998865 23321
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
...++..|.++...+++.+|..+|..++...|
T Consensus 103 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 103 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 23456789999999999999999999998555
No 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.60 E-value=0.26 Score=45.31 Aligned_cols=138 Identities=7% Similarity=-0.027 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCC-CC-
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPEN-AS- 90 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~-~~- 90 (343)
..+.+++..+.++...|....+...+..++..+....++.......+.+-.+|+..|+++.|...+.+.. .+.. .+
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3455677778888888888888888877777665555666666666777888999999999998887541 1110 01
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
.......++..|.++...+++.+|..++..++..++...... .......+-.+.+..|+...
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHH
Confidence 124455666789999999999999999999998665431111 11222333344555676544
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.59 E-value=0.39 Score=39.84 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+|+..+.++...+...++...+...+.. ++.. ......+..+|...++++.|...+.+. ..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------ 74 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------ 74 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----Cccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------
Confidence 4567778888888888888877766655542 1221 334455677788888888888887765 2232
Q ss_pred HHHHHHHHHHHHHHh-hCHHHHHHHHHHHHh
Q psy1676 94 WARFHFYLGRIKAVR-LEYSTAHKNLVQALR 123 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~-~~y~~A~~~L~~A~~ 123 (343)
....++..|.++... ++|.+|...+..++.
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 123456778888888 888888888888887
No 69
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.58 E-value=0.15 Score=41.38 Aligned_cols=106 Identities=10% Similarity=0.068 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhc---CCc---------chhHHHHHHHHHHHHhhccHHHHHhhhhhc-
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR---NDF---------EGQAVLINCLLRNYLHYNLYDQADKLVKKS- 83 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~---~~~---------~~~~~l~n~Llr~yl~~~~~~~a~~li~k~- 83 (343)
|..+.-.+..+-..+....+......+++..... .++ .....+...+-.+|++.++|+.|.....++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4445556666667778887777776666542211 111 112355566788999999999999988865
Q ss_pred C-CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 84 A-FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 84 ~-~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
. -| .....+|..|.++...++|.+|...|..|+...|..
T Consensus 91 ~~~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KREE------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hcCC------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 2 23 224568899999999999999999999999977764
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.54 E-value=0.48 Score=39.29 Aligned_cols=161 Identities=16% Similarity=0.072 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhh-ccHHHHHhhhhhc-CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY-NLYDQADKLVKKS-AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~-~~~~~a~~li~k~-~~p~~~~~~~ 93 (343)
.+.+++..+.++...+....+...+-.++.. ++.. ......+..+|+.. ++++.|...+++. ..|.. ..
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 111 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDS-AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY---PT 111 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC---SC
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC---cc
Confidence 3678999999999999999888777665553 2222 33445668889999 9999999999875 32221 23
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhH-hHh--hhhhhh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQA-VLR--RALSPY 169 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~-~l~--~~l~~Y 169 (343)
....++..|.++...+++.+|..+|..++...|... . ....+..+....|+.... ..+..- ... .....+
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 185 (225)
T 2vq2_A 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-P-----AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-H-----HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-h-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345678899999999999999999999999766531 1 122233334456665542 111110 001 112233
Q ss_pred HHHHHH-HHhCCHHHHHHHHHhc
Q psy1676 170 FQLTQA-VRMGELQKFNEVLTTY 191 (343)
Q Consensus 170 ~~L~~A-v~~Gdl~~f~~~l~~~ 191 (343)
..+... ...|+........+.-
T Consensus 186 ~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 186 LLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Confidence 334444 3567776665555443
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.52 E-value=0.32 Score=41.40 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=69.1
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh-HHHH----
Q psy1676 23 HSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN-NEWA---- 95 (343)
Q Consensus 23 ~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~-~~~~---- 95 (343)
.+.++...|+.+++...+-.+++. +|... .....+-.+|+..|+++.|...++++ .-|.+... ....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK-----APNNV-DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999888777655542 34333 33344578889999999999998875 23432110 0000
Q ss_pred ------------------------HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 96 ------------------------RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 96 ------------------------~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
--+|..|..+...++|.+|..+|..|++..|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 014567888888899999999999999966653
No 72
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.51 E-value=0.31 Score=38.58 Aligned_cols=101 Identities=9% Similarity=0.072 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+..++-.+.++-..+....+...+..++.. ++.. ..+...+-.+|+..++++.|...+.+. ..|.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------ 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------ 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------
Confidence 4566888888888899999888777766553 2222 344555678899999999999998865 2332
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..++...|..
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 13457789999999999999999999999976654
No 73
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.49 E-value=0.036 Score=40.90 Aligned_cols=101 Identities=8% Similarity=-0.014 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
+.+++..+.++...+....+...+-.++.. ++.. ......+-.+|+..++++.|...+++. ..|. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cch
Confidence 445677788888888888887776655542 2222 233445678899999999999998865 2332 112
Q ss_pred HHHHHHHHHHHHHh-hCHHHHHHHHHHHHhhCCc
Q psy1676 95 ARFHFYLGRIKAVR-LEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~-~~y~~A~~~L~~A~~~~~~ 127 (343)
...++..|.++... +++.+|..+|..++...|.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 45678899999999 9999999999999986664
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.5 Score=40.08 Aligned_cols=105 Identities=16% Similarity=0.071 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhh---------------------hcCCcchhHHHHHHHHHHHHhhccHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIAT---------------------LRNDFEGQAVLINCLLRNYLHYNLYDQ 75 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~---------------------~~~~~~~~~~l~n~Llr~yl~~~~~~~ 75 (343)
+.+|+..+.++...+...++...+..+++... +..++ ....+...+..+|+..++++.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHH
Confidence 78899999999999999988888777665210 00122 223455567889999999999
Q ss_pred HHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 76 ADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 76 a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
|...+++. ..|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 158 A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 158 AVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 99999875 2332 13567889999999999999999999999976653
No 75
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.45 E-value=0.45 Score=38.74 Aligned_cols=101 Identities=12% Similarity=0.054 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHH-HHhhccH--HHHHhhhhhc--CCCCCCC
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRN-YLHYNLY--DQADKLVKKS--AFPENAS 90 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~-yl~~~~~--~~a~~li~k~--~~p~~~~ 90 (343)
.+.+|+.++.++...+....+...+-.++... +.. ..+...+..+ |+..+++ +.|...+.+. ..|.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--- 113 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN-AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--- 113 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---
Confidence 45789999999999999998887776655432 222 2333444566 8899998 9999988865 2332
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..++...|..
T Consensus 114 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 114 ---EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred ---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 13457789999999999999999999999966654
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.44 E-value=0.46 Score=44.05 Aligned_cols=110 Identities=10% Similarity=-0.017 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCc---------chhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF---------EGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~---------~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
++-.+.+|+..+.++...++...+...+..+++..-...+. .....+.+.+-.+|++.++|+.|...++++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55678889999999999999999887777666532111100 001355566788999999999999999876
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 84 --AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 84 --~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..|. ....+|..|.++...++|.+|..+|..|+...|..
T Consensus 223 l~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 223 LELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 2232 24567899999999999999999999999977754
No 77
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.39 E-value=0.29 Score=43.39 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+|+..+.++...+....+...+..++... +.. ......+..+|+..++++.|...+++. ..|..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----- 192 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-----KGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----- 192 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----ccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-----
Confidence 35668888888888888888887776555432 221 122333677788888888888888865 23321
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
...++..|.++...++|.+|..+|..++.
T Consensus 193 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 193 -PFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 24466778888888888888888888875
No 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.38 E-value=0.26 Score=42.59 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
++-.+.+|+..+.++-..+....+...+..++.. +|.. ......+-.+|...++++.|...+.+. ..|..
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-- 110 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--
Confidence 3456788999999999999999888777665553 2222 234555678899999999999999875 23332
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++...++|.+|...|..++...|..
T Consensus 111 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 111 ----NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3557788999999999999999999999976654
No 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.34 E-value=1.1 Score=40.78 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCC---C--
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPE---N-- 88 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~---~-- 88 (343)
.+.+|+..+.++...|...++...+-.++.. +|.. ......+..+|...++++.|...+++. ..|. .
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHh
Confidence 3556777777777777777666666554432 1221 233444456666666666666665532 0110 0
Q ss_pred -----------------------------------CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHH
Q psy1676 89 -----------------------------------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGF 133 (343)
Q Consensus 89 -----------------------------------~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~ 133 (343)
.+.......++..|.++...++|.+|...|..++...|... .
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~-- 248 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-S-- 248 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H--
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-H--
Confidence 00000345677889999999999999999999999766541 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCh-hhhhhH-hHh-hhhhhhHHHHHHH-HhCCHHH
Q psy1676 134 RQTTQKLAVVVELLLGDIPDR-QIFRQA-VLR-RALSPYFQLTQAV-RMGELQK 183 (343)
Q Consensus 134 ~~~i~K~li~v~LL~G~iP~~-~~~~~~-~l~-~~l~~Y~~L~~Av-~~Gdl~~ 183 (343)
+...+..+..-.|+.... ..+..- .+. .....|..+..++ ..|+...
T Consensus 249 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 249 ---LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 122233334456665441 222110 001 1234556666665 4577433
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.31 E-value=0.21 Score=39.91 Aligned_cols=101 Identities=20% Similarity=0.137 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+++..+.++...+..+.+...+-.++.. ++.. ......+..+|+..++++.|...+.+. ..|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 108 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDN-VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------ 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------
Confidence 3678899999999999999888877665543 2222 344455678899999999999999875 2332
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|...+..++...|..
T Consensus 109 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 13456788999999999999999999999977664
No 81
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.29 E-value=0.21 Score=40.91 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
|+=.+.+|+..+.++...+....+...+...... ++.. ......+-..+...++++.|...+.+. ..|.
T Consensus 35 ~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--- 105 (184)
T 3vtx_A 35 DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTS-AEAYYILGSANFMIDEKQAAIDALQRAIALNTV--- 105 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cchh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 3445678899999999999988887766554432 1222 233344466777888888888887764 2232
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|...|+.++...|..
T Consensus 106 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 106 ---YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 12345677888888888888888888888866655
No 82
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.25 E-value=0.26 Score=43.69 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCC---CCCCh
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFP---ENASN 91 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p---~~~~~ 91 (343)
..++++.+.++...+..+.+...+..++... ..+. .+.+.+..+|+..++++.|...+.+. ..| .....
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 232 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDP----FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCCh----HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence 4568888888988999888887776655422 1223 23455677888999999999888864 111 11122
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
......++..|.++...++|.+|..+|..++...|..
T Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 3345567788999999999999999999999866553
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.22 E-value=0.71 Score=42.35 Aligned_cols=108 Identities=9% Similarity=0.010 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCc--chhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF--EGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~--~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
.+.+++..+.++...|.+..+...+-.++..+...+++ .......+.+-.+|...|+++.|...+.+. ..+... .
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 170 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-P 170 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-G
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-c
Confidence 45567888999999999999998888877765544443 344556666788999999999999998865 233222 2
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
...+..++..|+++...+++.+|..++..+...
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234566778999999999999999999999874
No 84
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.08 E-value=0.28 Score=40.16 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
+.+|+-.+.++...|..+++...+-.+++. +|... .....+-.+|++.++++.|...+.+. ..|. .
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~ 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNNV-ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------S 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------h
Confidence 568999999999999999998877766553 34432 33445688999999999999998865 2232 2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhH-hHh-hhhhhhHH
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQA-VLR-RALSPYFQ 171 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~-~l~-~~l~~Y~~ 171 (343)
....+..|.++...+++..|...+..|+...|... . ....+-.+..-+|+.... ..+..- .+. .....|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~-----~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA-D-----AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-H-----HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 34466789999999999999999999999766541 1 122233334556775552 222110 011 12345666
Q ss_pred HHHHHH-hCCH
Q psy1676 172 LTQAVR-MGEL 181 (343)
Q Consensus 172 L~~Av~-~Gdl 181 (343)
+..++. .|+.
T Consensus 147 lg~~~~~~g~~ 157 (184)
T 3vtx_A 147 IGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHCCCH
Confidence 777664 5664
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.08 E-value=1 Score=38.50 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
+.+..|.++..+++|.+|...|..++...|.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 3355555666666666666666666654443
No 86
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.02 E-value=0.32 Score=46.13 Aligned_cols=108 Identities=11% Similarity=-0.053 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhc----------CCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-C
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR----------NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-A 84 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~----------~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~ 84 (343)
.+..|+-.+..+...+..+.+...+..+++..... ........+.+.+-.+|++.++|+.|....+++ .
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34557788888888889888888777776632111 011223355666789999999999999998876 2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 85 FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 85 ~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.. ......+|..|.++...++|.+|..+|..|+...|..
T Consensus 302 ~~-----p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 302 ID-----PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp TC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hC-----chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 21 1234567899999999999999999999999977754
No 87
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.01 E-value=0.43 Score=39.80 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChH
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNN 92 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~ 92 (343)
-.+..+|..+..+...+..+.+...+..++ ++ .......+-.+|+..++++.|...+.+. ..|.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----- 69 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----- 69 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 345568888999988999888876664432 22 2345666788999999999999998865 2232
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..|+...|..
T Consensus 70 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 70 -LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred -chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 23557889999999999999999999999966654
No 88
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.99 E-value=0.83 Score=38.44 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+++..+.++...+....+...+..+++.. +.. ..+...+..+|+..++++.|...+.+. ..|.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 157 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------ 157 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------
Confidence 46778889999999999998888776665532 222 234556688999999999999999865 2232
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
....++..|.++...++|.+|...|..++...|... . +...+..+....|+...
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-D-----AFYNAGVTYAYKENREK 211 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTTCTTH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-H-----HHHHHHHHHHHccCHHH
Confidence 134577899999999999999999999999766531 1 22333334455666544
No 89
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.98 E-value=0.44 Score=41.17 Aligned_cols=150 Identities=14% Similarity=0.064 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CCCCCCChHHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPENASNNEWAR 96 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~p~~~~~~~~~~ 96 (343)
.+++-++.++-..+..+++...+-.++.. +|.... ....+..+|+..++++.|...+.+. ..|. .......
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPY-IYNRRAVCYYELAKYDLAQKDIETYFSKVN--ATKAKSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCST-THHHHHHHHHHTTCHHHHHHHHHHHHTTSC--TTTCCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhccC--chhHHHH
Confidence 45667777788888988888777665542 333222 3344566899999999999998865 3332 1122345
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhHhH---hhhhhhhHHH
Q psy1676 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVL---RRALSPYFQL 172 (343)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~~l---~~~l~~Y~~L 172 (343)
-++..|.++...++|.+|..+|..++...|... . +...+-.+...+|+.... ..+. ..+ ......|..+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-----~~~~l~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL-D-----MYGQIGSYFYNKGNFPLAIQYME-KQIRPTTTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-H-----HHHHHHHHHHHTTCHHHHHHHHG-GGCCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH-H-----HHHHHHHHHHHccCHHHHHHHHH-HHhhcCCCcHHHHHHH
Confidence 578999999999999999999999999766542 1 222233334456664331 1111 000 0122345667
Q ss_pred H-HHHHhCCHH
Q psy1676 173 T-QAVRMGELQ 182 (343)
Q Consensus 173 ~-~Av~~Gdl~ 182 (343)
. .++..++..
T Consensus 149 ~~~~~~~~~~~ 159 (272)
T 3u4t_A 149 GQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHHHHHH
Confidence 7 777777533
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.93 E-value=0.19 Score=40.64 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=58.5
Q ss_pred HHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHH
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQK 139 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K 139 (343)
.+-++|++.++|+.|...++++ .-|. ....++..|.++...++|.+|..+|..|+...|... ..+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~- 103 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK-----DLVL- 103 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH-----HHHH-
Confidence 4578899999999999999875 2332 245678899999999999999999999999766541 1121
Q ss_pred HHHHHHHhcCCCCC
Q psy1676 140 LAVVVELLLGDIPD 153 (343)
Q Consensus 140 ~li~v~LL~G~iP~ 153 (343)
.+-.+..-+|+.+.
T Consensus 104 ~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 104 KIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHCSSSS
T ss_pred HHHHHHHHcCChHH
Confidence 22233445777776
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.93 E-value=0.81 Score=38.76 Aligned_cols=100 Identities=8% Similarity=-0.065 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWA 95 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~~~ 95 (343)
..||..+.++-..+...++...+..++... .+.......+ +-.+|+..++++.|...+.+.. .| ...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p------~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDSVTAYN-CGVCADNIKKYKEAADYFDIAIKKNY------NLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTC------SHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCcHHHHH-HHHHHHHhhcHHHHHHHHHHHHHhCc------chH
Confidence 678888999999999998888776665532 1022233333 7889999999999999988762 22 245
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..++..|.++...++|.+|...|..++...|..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 567889999999999999999999999977654
No 92
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.89 E-value=0.15 Score=39.04 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 57 AVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 57 ~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
......+-.+|+..++|+.|...+.++ ..|.. ...++..|.++...++|.+|...|..++...|..
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 355556688999999999999999876 34532 4567889999999999999999999999965544
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.88 E-value=1.6 Score=39.32 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
+.+|+..+.++...|....+...+-.++.. +|.. ......+..+|...++++.|...+.+.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDN-QTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666677777777766666555444432 1211 233444566777777777777776643
No 94
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.81 E-value=0.24 Score=44.92 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
+.+++..+.++...|..+++...+..++.. ++.. ....+.+..+|...|+++.|...+++. ..|. .
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~ 284 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------Y 284 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Confidence 445555555555556555555544443332 1111 223334455556666666666555543 1121 1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
...++..|.++...++|.+|..+|..++.
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23345556666666666666666666665
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.75 E-value=0.13 Score=41.68 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
++=.+..+|.++++|...+..+.+...+-.+++. +|.. ......+-.+|.+.++++.|...++++ .-|.
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--- 97 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERD-PKAHRFLGLLYELEENTDKAVECYRRSVELNPT--- 97 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---
Confidence 3444556899999999999999999888766653 2332 344556688899999999999999875 2332
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHH-HHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHK-NLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~-~L~~A~~~~~~~ 128 (343)
....++..|.++...+++.+|.. ++..|+...|.+
T Consensus 98 ---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 98 ---QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp ---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 23457788999999999987765 568999977764
No 96
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.69 E-value=0.31 Score=44.51 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcc-hhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFE-GQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~-~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
+.++...+.++...+...++...+-.++.. +|. ....+.+.+-.+|...++++.|...+++. ..|..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----- 246 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----- 246 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH-----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 445555666666777777776666555443 122 12334445567777778888877777754 22321
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++...++|.+|..+|..|+...|..
T Consensus 247 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 247 -YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 2345677777777788888888888777755543
No 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.67 Score=43.93 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
++..|.++...+++.+|...|..++...|
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 44555555555555555555555555444
No 98
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.53 E-value=1.1 Score=39.39 Aligned_cols=94 Identities=20% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWA 95 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~ 95 (343)
.+++..+.++...+..+++...+..++.. ++.. ......+..+|+..++++.|...+.+. ..|. ..
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~ 240 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINPG------YV 240 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CH
Confidence 44555555555556555555544443332 1111 223334455566666666666655543 1121 12
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
..++..|.++...++|.+|..+|..++.
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2344556666666666666666666665
No 99
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.50 E-value=0.13 Score=38.63 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 59 LINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 59 l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
....+-.+|+..++++.|...+.+. ..|.. ...++.+|.++...++|.+|...|..|+..++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3445578899999999999999875 23431 236788999999999999999999999985543
No 100
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.49 E-value=0.81 Score=44.39 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCC---------cchhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND---------FEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~---------~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
++-.+..|+-.+..+-..++...+...+..++...-...+ ......+.+.+-.+|++.++|+.|...++++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4456778888999999999999888777766653211110 0011355556688999999999999998875
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 84 --AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 84 --~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..|. ....+|..|.++...++|.+|..+|..|+...|..
T Consensus 344 l~~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 344 LGLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HhcCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 2232 24568899999999999999999999999976654
No 101
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.37 E-value=1.3 Score=39.96 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
+.+++..+.++...|+.+++...+-. +. .......+..+|++.|.++.|...+++.
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~----------~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ----------GD-SLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT----------CC-SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC----------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567777777777777666654432 11 1123333455566666666666665543
No 102
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.32 E-value=0.24 Score=42.54 Aligned_cols=103 Identities=18% Similarity=0.086 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhhc-----------ccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy1676 14 LIAAKCYFYHSRVHELT-----------NNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK 82 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~-----------~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k 82 (343)
+=.+.+++.++.++... |...++...+-.+++. +|.. ......+-.+|...|+++.|...+++
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRY-APLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----Cccc-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33456788888888888 8887777666554442 3332 23344557788999999999988886
Q ss_pred c-CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 83 S-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 83 ~-~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
. ... +....++..|.++...++|.+|...|..++...|..
T Consensus 144 al~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 144 ALALE------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5 111 123456788999999999999999999999866654
No 103
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.32 E-value=0.5 Score=46.16 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCC-CChHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPEN-ASNNE 93 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~-~~~~~ 93 (343)
+.+|+..+.++...|.++++...+-..+.. ++... ...+.+...|.+.|+++.|..++++. ..|.. .....
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDP-LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 345556666666666666666555443331 11111 12344455666666666666666643 11110 01112
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
....++..|.++...+++.+|...|..++...|
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 234455566666666666666666666665433
No 104
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.15 E-value=0.32 Score=34.51 Aligned_cols=68 Identities=24% Similarity=0.218 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 55 GQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 55 ~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
........+-..|+..++++.|...+.+. ..|. ....++..|.++...++|.+|..+|..++...|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 33445556678899999999999998865 2232 13457789999999999999999999999966653
No 105
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.05 E-value=0.3 Score=42.29 Aligned_cols=102 Identities=7% Similarity=-0.044 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWA 95 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~ 95 (343)
.+++..+.++...+...++...+..++.. ..++.........+-.+|...++++.|...+.++ ..|.. .
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~------~ 108 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR------L 108 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------T
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------H
Confidence 36788888888888888888777665541 1333444445566678888899999998888865 22321 1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..++..|.++...++|.+|..+|..++...|..
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 346678888888899999998888888865543
No 106
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.85 Score=33.40 Aligned_cols=63 Identities=17% Similarity=0.006 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 60 INCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 60 ~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...+-..|+..++|+.|...+.+. ..|. ....++..|.++...++|.+|..+|..|+...|..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 445567889999999999998865 2332 14557899999999999999999999999966653
No 107
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.91 E-value=1 Score=42.97 Aligned_cols=125 Identities=6% Similarity=-0.072 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhcc-HHHHHhhhhhcC--CCC
Q psy1676 11 TSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNL-YDQADKLVKKSA--FPE 87 (343)
Q Consensus 11 ~~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~-~~~a~~li~k~~--~p~ 87 (343)
.+++=.+.+|++++.++...++...+...+-.+++. +|.. ....+.+-.+|...+. ++.|...++++. .|.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-----~P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~ 164 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL-----NAAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 164 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC
Confidence 345556788999999999999988888766555442 3332 3455566778889996 999999998762 232
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 88 NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 88 ~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
....++..|.++...++|.+|..+|..|+...|.. ... ...+-.+...+|+...
T Consensus 165 ------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a-----~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 165 ------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHA-----WQHRQWVIQEFKLWDN 218 (382)
T ss_dssp ------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHH-----HHHHHHHHHHHTCCTT
T ss_pred ------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHH-----HHHHHHHHHHcCChHH
Confidence 24457889999999999999999999999976654 111 1223333445787665
No 108
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=93.87 E-value=0.25 Score=38.54 Aligned_cols=96 Identities=15% Similarity=-0.049 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHH
Q psy1676 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARF 97 (343)
Q Consensus 20 ~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y 97 (343)
+|-.+..+-..|...++...+-.+++. +|... .....+-.+|...++++.|...+++. .-|. ....
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-EAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHH
Confidence 566777777788888877666554442 33332 33345577888999999999888865 2232 2345
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
++.+|.++...+++.+|..+|..++...|.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 678999999999999999999999885443
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.75 E-value=0.5 Score=42.49 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWAR 96 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~ 96 (343)
+..++-.+..+...++..++...+-.+++. +|.. ..+...+-.+|++.++++.|...++++.--. .....
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~ 73 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV-AVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVK 73 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHH
Confidence 556777888888899999888777655543 3333 3444556889999999999999998762111 12245
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
.+|..|.++...++|.+|...|..|+...|
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 678899999999999999999999998443
No 110
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.68 E-value=1.2 Score=39.56 Aligned_cols=166 Identities=8% Similarity=-0.057 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh--
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN-- 91 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~-- 91 (343)
...+++..+.++...+....+...+-.++.. +|.. ......+..+|...++++.|...+++. ..|.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH
Confidence 4577889999999999998888776554432 3333 234556688899999999999998875 34543211
Q ss_pred ----HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhH-hHh-h
Q psy1676 92 ----NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQA-VLR-R 164 (343)
Q Consensus 92 ----~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~-~l~-~ 164 (343)
...+.-..-.|.++...++|.+|...|..++...|... .. .......+.-+..-.|+.... ..+..- ... .
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-EY-TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-HH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 12233355678999999999999999999999776642 11 222222333444567775552 222110 001 1
Q ss_pred hhhhhHHHHHHH-HhCCHHHHHHHHH
Q psy1676 165 ALSPYFQLTQAV-RMGELQKFNEVLT 189 (343)
Q Consensus 165 ~l~~Y~~L~~Av-~~Gdl~~f~~~l~ 189 (343)
....|..+..++ ..|+...-...++
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233455666655 4676544433333
No 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.55 E-value=0.52 Score=45.20 Aligned_cols=59 Identities=10% Similarity=-0.059 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK 82 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k 82 (343)
.+|+..+.++...|..+++...+-.++.. ++.. ..+...+..+|...|+++.|...+.+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLK-----FPTL-PEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555666666666666555555443332 1111 12233335555555666665555554
No 112
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.51 E-value=0.5 Score=46.14 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=72.3
Q ss_pred hhcccHHHHHHHHHHHHHH--hhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc------CCCCCCChHHHHHHHH
Q psy1676 28 ELTNNLDKVRSFLNARLRI--ATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHF 99 (343)
Q Consensus 28 e~~~~~~~~~~~l~~~~r~--a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~------~~p~~~~~~~~~~Y~Y 99 (343)
+..|..+++.+.+..++.. ..+..+....+...|.|...|...|+|+.|..+..++ .+++ ...+.+.-+.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--YSLNVASMWL 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC--CChHHHHHHH
Confidence 3445666777776666643 3344455556677788899999999999999998865 2332 3467788888
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 100 YLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
-+|.+|..+++|.+|...|..|+.
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999999997
No 113
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.43 E-value=0.24 Score=42.59 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHH
Q psy1676 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWA 95 (343)
Q Consensus 18 ~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~ 95 (343)
.+++..+.++...|+.+++...+-.++. .+|... .....+-.+|...++++.|...+++. .-|. ..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~ 73 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALK-----ENPQDP-EALYWLARTQLKLGLVNPALENGKTLVARTPR------YL 73 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cH
Confidence 3456666666666666666654433222 233322 22333455666667777776666654 2232 12
Q ss_pred HHHHHHHHHHHHh-----------hCHHHHHHHHHHHHhhCCc
Q psy1676 96 RFHFYLGRIKAVR-----------LEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 96 ~Y~YY~Gri~~~~-----------~~y~~A~~~L~~A~~~~~~ 127 (343)
..++..|.++... +++.+|...|..|+...|.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence 2345566666666 6777777777776665444
No 114
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.38 E-value=2.4 Score=41.17 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNL-DKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~-~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~p~~~~~~~ 93 (343)
.+.+|+..++++...+.. +++...+-.+++. +|.. ....+.+-.+|+..++++.|...+.+. ... +.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPEL-VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KN-- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CC--
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC--
Confidence 577899999999999999 9888777666553 2322 345566788999999999999999876 221 12
Q ss_pred HHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVR---------LEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~---------~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++... ++|.+|..+|..|+...|..
T Consensus 170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 36788999999999 99999999999999977654
No 115
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.34 E-value=5.8 Score=38.43 Aligned_cols=57 Identities=21% Similarity=0.139 Sum_probs=26.6
Q ss_pred HHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
.+...|.+.|+++.|..++++. ..|. ....++..|.++...+++.+|...|..++..
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555555555555555543 1111 1112334455555555555555555555543
No 116
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.32 E-value=0.37 Score=36.39 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
.....+-..|+..++++.|...+.+. ..|. ....++..|.++...+++.+|..+|..|+...|.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 44556688899999999999999875 2332 2445788999999999999999999999985543
No 117
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.20 E-value=4.2 Score=35.90 Aligned_cols=100 Identities=8% Similarity=-0.040 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
+..++-.+.++...+....+...+-.++.. +|.. ..+...+..+|+..++++.|...+.+. ..|. .
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~ 187 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEV-----CVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKSD------N 187 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC------C
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------C
Confidence 556777788888999999888887766553 2222 345566788999999999999999876 2232 1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++...++|.+|...|..++...|..
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 2457789999999999999999999999976664
No 118
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.15 E-value=0.61 Score=46.29 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=72.7
Q ss_pred hcccHHHHHHHHHHHHHH--hhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc------CCCCCCChHHHHHHHHH
Q psy1676 29 LTNNLDKVRSFLNARLRI--ATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHFY 100 (343)
Q Consensus 29 ~~~~~~~~~~~l~~~~r~--a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~------~~p~~~~~~~~~~Y~YY 100 (343)
..|+.+++.+....++.. ..+..+....+...|.|...|...++|+.|..+..++ .+++ ...+.+.-+.-
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~n 398 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH--NNAQLGMAVMR 398 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT--TCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Confidence 456777777777666643 3344455556677788899999999999999998864 3433 34678888889
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 101 LGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 101 ~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
+|.+|..+|+|.+|...+..|+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999997
No 119
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.14 E-value=0.89 Score=47.30 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-C-CCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-A-FPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~-~p~~~~~~~ 93 (343)
.|.+|+-++.++...|+++++...+-.++.. +|+.. ...+.|-.+|.+.|+++.|...++++ . -| +
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----~P~~~-~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV-----FPEFA-AAHSNLASVLQQQGKLQEALMHYKEAIRISP------T 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------C
Confidence 3667888999999999999888766655442 33332 33444578888999999999888865 2 23 2
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++.+|.++...++|.+|..+|..|+...|..
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 24557788999999999999999999999866653
No 120
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.08 E-value=1.2 Score=41.58 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
|+-.+..++..+..+-..+....+...+-.++.. +|.. ......+...|+..++++.|...+.+. ..|.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 92 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN-YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--- 92 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence 4556778899999999999999988777665542 2332 455566788999999999999999875 2232
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
....++..|.++...++|.+|...|..++...|.
T Consensus 93 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 126 (450)
T 2y4t_A 93 ---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126 (450)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC
T ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2456778999999999999999999999996654
No 121
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.99 E-value=0.68 Score=43.29 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCc-chhHHHHHHHHHHHHhhccHHHHHhhhhhc-CCCC-CCChHHHH
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF-EGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPE-NASNNEWA 95 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~-~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~p~-~~~~~~~~ 95 (343)
.+++.+.+++..|..+++...+... +..++ .+..-..-++.++|++.|+++.|...+++. ..++ .....+.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~-----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEG-----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 4579999999999999888777543 22233 233455556789999999999999999865 2221 01123556
Q ss_pred HHHHHHHHHHHHhh--CHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh
Q psy1676 96 RFHFYLGRIKAVRL--EYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~--~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~ 154 (343)
....-.|-+.+..+ ++.+|+..|+.....+|..+ ....-|- +.+.+|++|..
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-----~~~lLln--~~~~~g~~~eA 230 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-----TQLGLLN--LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-----HHHHHHH--HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-----cHHHHHH--HHHHcCCHHHH
Confidence 66666787888877 99999999999888776411 1011111 68889999883
No 122
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.85 E-value=1 Score=34.05 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 63 LLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 63 Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+-..++..++|+.|...+++. ..|.+ ......+|..|.++...++|.+|..+|..++...|..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 456788999999999999865 34532 2334567889999999999999999999999966653
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.55 E-value=5.5 Score=35.59 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CCCCCCChHH
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPENASNNE 93 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~p~~~~~~~ 93 (343)
=.+.+|+-++..++..|..+.++..+-.+++ .+|.....+.+.+...+.+.+.++.|..++++. ..+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---- 167 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---- 167 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC----
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----
Confidence 3456889999999999999988876655444 233322225556677788899999999998875 332211
Q ss_pred HHHHHHHHHHHHHH---hhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAV---RLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~---~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+..|.|...+. .+++.+|...|+.|+...|..
T Consensus 168 ---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 168 ---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp ---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 12233444442 689999999999999976653
No 124
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.44 E-value=1 Score=44.48 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
|+-.+.+|+.++.++...++.+++...+-.+++ .++.. ......+-.+|...++++.|...+++. ..|.
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 89 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-----LHPGH-PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--- 89 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence 333467788888888888888888766655443 23332 334455677888899999998888865 2232
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..|+...|..
T Consensus 90 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 90 ---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 13456778888888889999998888888866543
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.33 E-value=1.7 Score=34.82 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 55 GQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 55 ~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..+.....+-..|+..++|+.|...+.+. ..|. ....++..|.++...++|.+|..+|..|+...|..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 34455666788899999999999998865 2332 24678889999999999999999999999966653
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.05 E-value=0.65 Score=36.69 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=50.0
Q ss_pred HHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.+-..++..++|+.|...+++. .-|. ...+++..|.++...++|.+|..+|..|+...|..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4477889999999999999865 2232 24567889999999999999999999999976654
No 127
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.00 E-value=2.1 Score=36.65 Aligned_cols=60 Identities=10% Similarity=-0.077 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhh
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK 82 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k 82 (343)
+.+|+..+.++...+....+...+-.++.. +|.. ......+..+|+..++++.|...+++
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTY-NYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----Cccc-cHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 455666677777777766666555544432 1111 23333445556666666666665554
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.93 E-value=2.6 Score=35.89 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcch--hHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEG--QAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNN 92 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~--~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~ 92 (343)
+..+|-.+..+-..|....+...+-..+.. .|.+ ..-....+-.+|++.++|+.|...+++. ..|.+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~- 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI- 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-
Confidence 456777788888888998888777655542 2222 1233444578899999999999998875 45653221
Q ss_pred HHHHHHHHHHHHHHH------------------hhCHHHHHHHHHHHHhhCCcc
Q psy1676 93 EWARFHFYLGRIKAV------------------RLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~------------------~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..-+|+.|.++.. .+++.+|...|..++...|..
T Consensus 78 --~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 78 --DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp --HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred --HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 1225677887764 578999999999999976664
No 129
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=91.84 E-value=1.2 Score=40.86 Aligned_cols=122 Identities=14% Similarity=-0.018 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCCh
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~ 91 (343)
+-.+.+++..+.++...+..+.+...+..++.. +|... ...+.+...|.+.++++.|...+++. ..|..
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 304 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFP-DAYCNLANALKEKGSVAEAEDCYNTALRLCPTH--- 304 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC---
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---
Confidence 334678888999999999998888776554431 23222 33455678888999999999998865 23321
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
...++..|.++...+++.+|...|..++...|... . ....+..+..-.|+...
T Consensus 305 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~-----~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 305 ---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-A-----AHSNLASVLQQQGKLQE 357 (388)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH-H-----HHHHHHHHHHTTTCCHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-H-----HHHHHHHHHHHcCCHHH
Confidence 23456788889999999999999999998666531 1 12223334455666555
No 130
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.79 E-value=1.5 Score=45.54 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-C-CCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-A-FPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~-~p~~~~~~~ 93 (343)
.+.+|+.++.++...|+.+++...+-.+++. +|+. ....+.+-.+|.+.++++.|...++++ . -|.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------ 109 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTF-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------ 109 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 4677999999999999999988777665542 3333 334455578899999999999998875 2 232
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...-++.+|.++...++|.+|..+|..|+...|..
T Consensus 110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 24457789999999999999999999999966653
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.75 E-value=0.72 Score=37.15 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=53.1
Q ss_pred CcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 52 DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 52 ~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+|..... ...+-..++..++|+.|...+++.. -|. ...+++..|.++...++|.+|..+|..|+...|..
T Consensus 17 ~p~~~~~-~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 17 SSDTLEQ-LYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp CHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CHhhHHH-HHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3443333 3345788999999999999998652 232 24567889999999999999999999999976654
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.62 E-value=0.66 Score=38.07 Aligned_cols=87 Identities=8% Similarity=-0.029 Sum_probs=61.2
Q ss_pred CcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccc
Q psy1676 52 DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA 129 (343)
Q Consensus 52 ~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~s 129 (343)
+|+....+ ..+-..|++.|+|+.|...+++.. -| ....+++..|.++...++|.+|..+|..|+...|...
T Consensus 32 ~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 32 PDDMMDDI-YSYAYDFYNKGRIEEAEVFFRFLCIYDF------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp CHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 44443333 344778899999999999998752 23 2345788899999999999999999999999766542
Q ss_pred hHHHHHHHHHHHHHHHHhcCCC
Q psy1676 130 AVGFRQTTQKLAVVVELLLGDI 151 (343)
Q Consensus 130 a~~~~~~i~K~li~v~LL~G~i 151 (343)
. ....+-.+.+.+|+.
T Consensus 105 -~-----~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 105 -T-----PVFHTGQCQLRLKAP 120 (151)
T ss_dssp -H-----HHHHHHHHHHHTTCH
T ss_pred -H-----HHHHHHHHHHHcCCH
Confidence 1 122333445556663
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.55 E-value=2.3 Score=33.23 Aligned_cols=98 Identities=9% Similarity=-0.077 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+++..+.++...+....+...+..+++. ++.. ......+-.+|+..++++.|...+.+. ..|. ..
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~ 115 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVKPH----DK 115 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CH
Confidence 4678899999999999999888877766653 2222 234455678899999999999999875 2332 23
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
.+...+-.|..+...++|.+|...+..+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 334445566667788999999988887655
No 134
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.55 E-value=0.69 Score=33.60 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 64 LRNYLHYNLYDQADKLVKKS--AFPENASNNEWAR-FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 64 lr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~-Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...|+..++++.|...+++. ..|.. .. .++..|.++...++|.+|..+|..|+...|..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 56788999999999999865 23431 23 67889999999999999999999999976654
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.51 E-value=2.9 Score=30.20 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 59 LINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 59 l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
....+-..|+..++++.|...+.+. ..|. ....++..|.++...++|.+|...+..++...|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3445678889999999999998875 2332 1456788999999999999999999999996664
No 136
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.37 E-value=1.1 Score=43.55 Aligned_cols=103 Identities=14% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhc---------ccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhh--------ccHHHHHhh
Q psy1676 17 AKCYFYHSRVHELT---------NNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY--------NLYDQADKL 79 (343)
Q Consensus 17 a~~~~y~~~~~e~~---------~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~--------~~~~~a~~l 79 (343)
+.+++.++.++... ++.+++...+..++.. +|.. ....+.+-..|+.. ++++.|...
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLD-GRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 36788888888888 8888877766655542 2222 22333345555555 779999999
Q ss_pred hhhcC--CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 80 VKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 80 i~k~~--~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+++.. .|. .......++..|.++...++|.+|..+|..|+...|..
T Consensus 244 ~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 244 YAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 88652 221 12456678899999999999999999999999976654
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.33 E-value=2.4 Score=32.25 Aligned_cols=65 Identities=12% Similarity=-0.065 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.....+-..|+..++|+.|...+.+. ..|. ....++..|.++...++|.+|..++..|+...|..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 44455678899999999999998865 2332 24578889999999999999999999999976653
No 138
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.29 E-value=0.95 Score=34.28 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=49.9
Q ss_pred HHHHHHhhccHHHHHhhhhhcC--C-CCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 63 LLRNYLHYNLYDQADKLVKKSA--F-PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 63 Llr~yl~~~~~~~a~~li~k~~--~-p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
|-+.++..++|..|...+..+. . ++..+.......++++|..+...+++..|..++..|+...|..
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 5678899999999999988641 1 1111122344566899999999999999999999999966654
No 139
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.27 E-value=9 Score=35.38 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC---C
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA---S 90 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~---~ 90 (343)
.+.+|+..+.++...+...++...+-.+++. +|.. ......+..+|...++++.|...+++. ..|... .
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 132 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKE 132 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 4678899999999999999888777665553 2222 345566789999999999999999876 233211 0
Q ss_pred h-H-----HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCCh-hhhhhHhHh
Q psy1676 91 N-N-----EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLR 163 (343)
Q Consensus 91 ~-~-----~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~-~~~~~~~l~ 163 (343)
. . ....-.+-.|..+...++|.+|...|..++...|... . +...+.-+....|+.... ..+.. .+.
T Consensus 133 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~----~~~~l~~~~~~~g~~~~A~~~~~~-~~~ 205 (450)
T 2y4t_A 133 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA--E----LRELRAECFIKEGEPRKAISDLKA-ASK 205 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--H----HHHHHHHHHHHTTCGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--H----HHHHHHHHHHHCCCHHHHHHHHHH-HHH
Confidence 0 0 1111245668889999999999999999999766541 1 222333444567776552 22221 111
Q ss_pred ---hhhhhhHHHHHHH-HhCCHHHHHHHH
Q psy1676 164 ---RALSPYFQLTQAV-RMGELQKFNEVL 188 (343)
Q Consensus 164 ---~~l~~Y~~L~~Av-~~Gdl~~f~~~l 188 (343)
.....+..++.++ ..|+...-...+
T Consensus 206 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 206 LKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1233455666655 457755433333
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.26 E-value=1.8 Score=31.58 Aligned_cols=96 Identities=5% Similarity=-0.072 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+..|+..+.++-..++..++...+..+++. +|.. ......+-.+|+..++++.|...+.+. ..|.......
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 3567888999999999999888777665553 2332 334455688999999999999999875 3454333344
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHH
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKN 117 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~ 117 (343)
....++..|.++...+++..|...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhH
Confidence 567788889998888877666543
No 141
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.11 E-value=2.4 Score=37.20 Aligned_cols=100 Identities=14% Similarity=-0.069 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~ 94 (343)
+..+|..+..+-..+...++...+-.+++. +|.. ......+...|+..++++.|...+.+. ..|. .
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~ 88 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA-----APER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------D 88 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------C
Confidence 345677788888888888888777655542 2322 234445688899999999999999865 2332 2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++...++|.+|...+..++...|..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 3457788999999999999999999999865543
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.00 E-value=0.89 Score=44.49 Aligned_cols=98 Identities=8% Similarity=0.064 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHH
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWAR 96 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~ 96 (343)
.++..+..+...++.+++...+..++.. ++.. ....+.+-..|++.++|+.|....+++ ..|. ...
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~ 75 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIK 75 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHH
Confidence 3444555666777888887777665553 2333 445556688999999999999999875 2232 245
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.++..|.++...++|.+|...|..|+...|..
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 67889999999999999999999999966654
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.95 E-value=2.3 Score=31.47 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
.....+-..|+..++++.|...+.+. ..|. ....++..|.++...++|.+|..++..++...|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 34455678899999999999998865 2232 145678899999999999999999999998543
No 144
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=90.90 E-value=3.7 Score=34.53 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=66.7
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHhhh----------cCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC
Q psy1676 23 HSRVHELTNNLDKVRSFLNARLRIATL----------RNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (343)
Q Consensus 23 ~~~~~e~~~~~~~~~~~l~~~~r~a~~----------~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~ 90 (343)
-+..+-..|....+...+-.+++..-. .........+.+.+-.+|++.++++.|...+++. ..|.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN--- 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---
Confidence 334444566777777666555442100 0000111123344788999999999999999875 2343
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 91 ~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
....++..|.++...++|.+|..+|..++...|..
T Consensus 87 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 87 ---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 24567889999999999999999999999976654
No 145
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.89 E-value=2.2 Score=40.28 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.|..++-.+..+-..|....+...+-.++... |+ ......+...|++.++++.|...+++. ..|.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 71 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED--PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD------ 71 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC------
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc--HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH------
Confidence 46778888999999999999888776666532 33 445666789999999999999999865 2332
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
....++..|.++...++|.+|...|..++...|.
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 2355778999999999999999999999996553
No 146
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.87 E-value=1.7 Score=33.82 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=48.6
Q ss_pred HHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..=..|++.|+|+.|...++++ ..|. ....++..|.++...++|.+|...|..|+...|..
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 3456789999999999998875 2232 24567889999999999999999999999966553
No 147
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.86 E-value=1.2 Score=40.90 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+|+..+.++...+....+...+-.+++. +|.. ......+-.+|...+.++.|...+.+. ..|.
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------ 235 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------ 235 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------
Confidence 3566777777777777777776665544432 1221 122233355555666666665555543 1121
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
....++..|.++...+++.+|...|..++..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1223344555555666666666666666553
No 148
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.81 E-value=0.98 Score=43.87 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=58.2
Q ss_pred CcchhHHHHHHHHHHHHhhccHHHHHhhhhhc------CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 52 DFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 52 ~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~------~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
+....+.+.|.|...|...++|+.|..+..++ .+++ ...+.+.-++-+|.+|..+++|.+|...|.+|+.
T Consensus 324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44445677788899999999999999998865 3443 3467888888999999999999999999999997
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.67 E-value=1.8 Score=37.62 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHh----hccHHHHHhhhhhcCCCCCCChH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPENASNN 92 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~----~~~~~~a~~li~k~~~p~~~~~~ 92 (343)
+.++|..+..+...+..+++...+..+.. ..++ .....+-.+|.. .++++.|...+++..-..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----
Confidence 56789999999999998888877655444 2222 233445678888 999999999988752111
Q ss_pred HHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhh
Q psy1676 93 EWARFHFYLGRIKAV----RLEYSTAHKNLVQALRK 124 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~ 124 (343)
...-++.+|.++.. .+++.+|..+|..|+..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 24457789999999 99999999999999985
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=90.67 E-value=3.6 Score=31.08 Aligned_cols=63 Identities=19% Similarity=0.096 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 60 INCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 60 ~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...+-..|++.++|+.|...+++. ..|. ....++..|.++...++|.+|..++..|+...|..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 344567889999999999998865 2332 24678889999999999999999999999976654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.61 E-value=4.2 Score=30.93 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHhhhhhc-C-CCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 57 AVLINCLLRNYLHYNLYDQADKLVKKS-A-FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 57 ~~l~n~Llr~yl~~~~~~~a~~li~k~-~-~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
......+-..|+..++++.|...+.+. . .| ........++..|.++...++|.+|...+..++...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 455666788999999999999999876 2 23 233457788899999999999999999999999966543
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.50 E-value=1.5 Score=32.17 Aligned_cols=70 Identities=23% Similarity=0.190 Sum_probs=52.4
Q ss_pred cchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 53 FEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 53 ~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+.........+...|+..++++.|..++.+. ..|. ....++..|.++...++|.+|...|..++...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 3333445566678899999999999998865 2332 13456788999999999999999999999866543
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.24 E-value=2 Score=30.96 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=48.3
Q ss_pred HHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
.+-..|+..++++.|...+++. ..|. ....++..|.++...++|.+|..+|..++...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4567788999999999998865 2332 1345678999999999999999999999997665
No 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=90.07 E-value=1.8 Score=41.27 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+|+..+.++...+....+...+-.+++. ++.. ......+..+|+..|+++.|...+++. ..|..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----- 377 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----NPEN-VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL----- 377 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence 4678999999999999999998887766653 2222 234555688999999999999999875 33432
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
...++..|.++...++|.+|..+|..++..
T Consensus 378 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 378 -PEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 224567799999999999999999999984
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.06 E-value=4.1 Score=29.92 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.....+-..|+..++++.|...+++. ..|. ....++..|.++...++|.+|..++..++...|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 44556678899999999999998865 2332 14567889999999999999999999999966643
No 156
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=89.89 E-value=1.2 Score=39.59 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=69.4
Q ss_pred hHHHHHHHHhCCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHH
Q psy1676 169 YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIA 248 (343)
Q Consensus 169 Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila 248 (343)
-..|.+.+.+|+..+|=+.++...+ ....+.-+...+.+.-...+..+|++||++++++.||..|+++++..+.
T Consensus 102 i~~L~~~L~~~~y~~fW~~l~~~~~------l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 102 ILYLGDLLETCHFQAFWQALDENMD------LLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTCH------HHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcChh------HHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 3468889999999988887764321 1122222334444555677889999999999999997547899998888
Q ss_pred HhHHcCCceEEeeCCCceEEEccC-----ccccccccchHHHHHHHHHHHH
Q psy1676 249 KAIRDGVIEATLDREKGYMQSKES-----ADIYCTVEPQLAFHQRIAFCLD 294 (343)
Q Consensus 249 ~lI~~G~I~a~Id~~~g~v~~~~~-----~~v~s~~ep~~~~~~rI~~cl~ 294 (343)
.- |.- +| ++|.|.+... +-+...+=+|..+.+=|+.|.-
T Consensus 176 ~~---GW~---vd-~~g~I~~~n~e~~~k~~~~~E~i~~~~~~~~~~~~~~ 219 (226)
T 1rz4_A 176 KY---GWS---AD-ESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQL 219 (226)
T ss_dssp HH---TCE---EC-C--CEECCCHHHHTSCCCSSCCCCHHHHHHHHCC---
T ss_pred HC---CCE---EC-CCccEEeCCCcccccceeeeecccHHHHHHHHHHHHH
Confidence 73 653 22 3455655322 1122233456676666665543
No 157
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.68 E-value=1.3 Score=40.91 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcC--Ccch---------hHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN--DFEG---------QAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~--~~~~---------~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
-.|..++..+..+-..++...+...+..+++..-... ...+ ...+.+.+-.+|++.++|+.|...++++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567788899998888998888877766554211000 0000 0025556788999999999999998875
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 84 --AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 84 --~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..|. ....+|..|.++...++|.+|..+|..|+...|..
T Consensus 257 l~~~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 257 LTEEEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 2232 24567899999999999999999999999865543
No 158
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.20 E-value=2.8 Score=41.22 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+|+.++.++...++.+++...+..++.. ++.. ......+-.+|...++++.|...+++. ..|.
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 123 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------ 123 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 4678899999999999999988777665553 2322 344556688999999999999999875 2332
Q ss_pred HHHHHHHHHHHHHHh---hCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVR---LEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~---~~y~~A~~~L~~A~~~~~~ 127 (343)
....++..|.++... +++.+|...|..++...|.
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 134567889999999 9999999999999996554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=89.11 E-value=3.6 Score=31.84 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 61 NCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 61 n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
..|=..|++.++|+.|....+++ ..|. ...+++..|.++...++|.+|..++..|+...|
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 34456788999999999998875 2332 245678899999999999999999999998443
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=88.81 E-value=4.9 Score=29.81 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
.-...+-..|+..++++.|...+.+. ..|. ....++..|.++...++|.+|..++..++...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 34445678899999999999999875 2232 1456788999999999999999999999996654
No 161
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.75 E-value=7.5 Score=37.64 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CCCCCCChHHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPENASNNEW 94 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~p~~~~~~~~ 94 (343)
...+|+.++..++..|..+.++..+-.++. .++.....+.....+.+.+.++++.|..++++. ..|.... ..
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~--~~ 392 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH--HV 392 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT--HH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch--HH
Confidence 477899999999999999999877765544 233332345666677788899999999999976 3333211 11
Q ss_pred HHHHHHHHHH-HHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 95 ARFHFYLGRI-KAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 95 ~~Y~YY~Gri-~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
|. -.|.+ +...+++.+|...|+.|+..+|..
T Consensus 393 --~~-~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 393 --YV-TAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp --HH-HHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred --HH-HHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 11 12222 235899999999999999977653
No 162
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=88.41 E-value=3 Score=39.18 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCC---cchhHHHHHHHHHHHHhhccHHHHHhhhhhc-----CCCCC
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND---FEGQAVLINCLLRNYLHYNLYDQADKLVKKS-----AFPEN 88 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~---~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-----~~p~~ 88 (343)
|.+|-..+.++...|+.+++...+-.++......+. ....+...+.+-.+|...|+++.|...+.++ .++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 455667889999999999998888777654333221 2223445556688999999999999888764 12211
Q ss_pred CChHHHHHHHHHHHHH--HHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 89 ASNNEWARFHFYLGRI--KAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 89 ~~~~~~~~Y~YY~Gri--~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
. ..+....+...|.. +...++|.+|..+|+.|+...|..
T Consensus 131 ~-~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 131 Y-RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp S-CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred c-chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 1 11122233344543 345678999999999999966653
No 163
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=88.28 E-value=1.1 Score=32.69 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=42.5
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
.-.-++|.++|..+++. .+++-.-|-.|..+|.|.|.||-...+|...+
T Consensus 18 ~~Kvv~LedLA~~F~l~-t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HCSEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HcCeeeHHHHHHHhCCC-hHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 34678999999999996 88888999999999999999999877776654
No 164
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.10 E-value=8.8 Score=39.06 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=94.0
Q ss_pred hcccHHHHHHHHHHHHHHh---hhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHHHHHHHHHHHH
Q psy1676 29 LTNNLDKVRSFLNARLRIA---TLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGR 103 (343)
Q Consensus 29 ~~~~~~~~~~~l~~~~r~a---~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~~~~Y~YY~Gr 103 (343)
..+..+++...+-.+++.+ ....++.. ......+-..|+..++++.|...+++.. .|. ....+|+.|.
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~ 475 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSES-VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAV 475 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTC-SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccc-hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHH
Confidence 3455566655554433100 00122332 2344556889999999999999988652 232 2457889999
Q ss_pred HHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCChhhhhhHhHh---hhhhhhHHHHHHHH-hC
Q psy1676 104 IKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLR---RALSPYFQLTQAVR-MG 179 (343)
Q Consensus 104 i~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~~~~~~~~l~---~~l~~Y~~L~~Av~-~G 179 (343)
++...++|.+|..+|..|+...|... . ....+-.+...+|+......+. ..++ .....|..+..+.. .|
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~-~-----~~~~lg~~~~~~g~~~~~~~~~-~al~~~P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGEL-A-----PKLALAATAELAGNTDEHKFYQ-TVWSTNDGVISAAFGLARARSAEG 548 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCS-H-----HHHHHHHHHHHHTCCCTTCHHH-HHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh-H-----HHHHHHHHHHHcCChHHHHHHH-HHHHhCCchHHHHHHHHHHHHHcC
Confidence 99999999999999999999766542 1 1223333455678876622222 2221 12335677777764 56
Q ss_pred CHHHHHHHHHhccccccccccH
Q psy1676 180 ELQKFNEVLTTYGNQFRTDYTF 201 (343)
Q Consensus 180 dl~~f~~~l~~~~~~f~~d~~~ 201 (343)
+. +++++.++.....+..+
T Consensus 549 ~~---~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 549 DR---VGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp CH---HHHHHHHHTSCTTSTTH
T ss_pred CH---HHHHHHHHhhcccCccc
Confidence 54 55666666656555554
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=87.96 E-value=1.7 Score=33.47 Aligned_cols=60 Identities=18% Similarity=0.008 Sum_probs=49.2
Q ss_pred HHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 63 LLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 63 Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+-..+++.++++.|...+++. ..|. ....++.+|.++...+++.+|..+|..|+...|..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456788999999999999875 2332 24567899999999999999999999999977754
No 166
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.58 E-value=1.3 Score=31.37 Aligned_cols=41 Identities=5% Similarity=0.159 Sum_probs=34.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQ 268 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~ 268 (343)
..++.++||+.++++ ...|..+|..|...|+|.. +..|+..
T Consensus 24 ~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~~---~~~G~y~ 64 (67)
T 2heo_A 24 GPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVSS---PSPKYWS 64 (67)
T ss_dssp SCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEEE---EETTEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEec---CCCceEe
Confidence 569999999999995 9999999999999999854 3346543
No 167
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=87.35 E-value=2 Score=40.88 Aligned_cols=101 Identities=5% Similarity=-0.071 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChH
Q psy1676 16 AAKCYFYHSRVHELTNN-LDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~-~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~ 92 (343)
.+.+|++.+.++...++ +.++...+-.+++ .+|.. ....+.+-.+|...++++.|...++++. -|.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-----l~P~~-~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~----- 198 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-----EQPKN-YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK----- 198 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----HCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-----
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----HCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence 45679999999999997 8888766655444 23333 3344555677888999999999998762 232
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...-+++.|.++...++|.+|..++..|+...|..
T Consensus 199 -~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 199 -NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp -CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 23346789999999999999999999999976654
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.04 E-value=6.6 Score=32.33 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCC-----h-----HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhC
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS-----N-----NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~-----~-----~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (343)
.....+-..|+..++|+.|...+.+. ..|.... . ......++..|.++...++|.+|..++..|+...
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34445678899999999999999875 3343211 0 1124678889999999999999999999999976
Q ss_pred Ccc
Q psy1676 126 PQT 128 (343)
Q Consensus 126 ~~~ 128 (343)
|..
T Consensus 119 p~~ 121 (198)
T 2fbn_A 119 KNN 121 (198)
T ss_dssp TTC
T ss_pred ccc
Confidence 643
No 169
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.43 E-value=4 Score=35.37 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHh----hccHHHHHhhhhhcCCCC
Q psy1676 16 AAKCYFYHSRVHEL----TNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPE 87 (343)
Q Consensus 16 ~a~~~~y~~~~~e~----~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~----~~~~~~a~~li~k~~~p~ 87 (343)
.+.+++.++.++.. .+..+.+...+..+... . .......+-.+|.. .++++.|...+++..-..
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 35678889999998 88888877666554432 2 23344456778888 999999999998763211
Q ss_pred CCChHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhC
Q psy1676 88 NASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALRKA 125 (343)
Q Consensus 88 ~~~~~~~~~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~~ 125 (343)
...-++.+|.++.. .+++.+|..+|..|+...
T Consensus 109 ------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 109 ------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp ------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred ------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 23456788999998 999999999999999854
No 170
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=85.90 E-value=10 Score=33.87 Aligned_cols=99 Identities=10% Similarity=-0.003 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWAR 96 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~ 96 (343)
...+-.++..+...+..+++...+-..+. ...+|+.. .+...+-.+|.+.|+++.|...+.+ |. ...
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~---~~~~P~~~-~~~~~la~~~~~~g~~~~Al~~l~~---~~------~~~ 131 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMS---RSVDVTNT-TFLLMAASIYFYDQNPDAALRTLHQ---GD------SLE 131 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHH---SCCCCSCH-HHHHHHHHHHHHTTCHHHHHHHHTT---CC------SHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHh---cccCCCCH-HHHHHHHHHHHHCCCHHHHHHHHhC---CC------CHH
Confidence 34444556666667777777666543332 11134332 3445567889999999999999987 32 223
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.++..|.++...+++.+|...|..++...|..
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 56678999999999999999999999966543
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=84.09 E-value=9.2 Score=30.24 Aligned_cols=70 Identities=7% Similarity=0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc-CC---------CCCCC-----hHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS-AF---------PENAS-----NNEWARFHFYLGRIKAVRLEYSTAHKNLVQAL 122 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~-~~---------p~~~~-----~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (343)
......-..|++.++|+.|.....++ .. |. .+ .......++..|.++...++|.+|..++..|+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPG-EPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTT-SHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445567888999999999887754 11 11 11 34566788899999999999999999999999
Q ss_pred hhCCcc
Q psy1676 123 RKAPQT 128 (343)
Q Consensus 123 ~~~~~~ 128 (343)
...|..
T Consensus 91 ~~~p~~ 96 (162)
T 3rkv_A 91 KREETN 96 (162)
T ss_dssp HHSTTC
T ss_pred hcCCcc
Confidence 976654
No 172
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=83.48 E-value=2.8 Score=30.58 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=33.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDRE 263 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~ 263 (343)
.+++..+||++++++ ...|...|.+|..+|+|...-+..
T Consensus 30 ~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 30 KATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp SCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEecCCCC
Confidence 389999999999996 889999999999999997764433
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=83.19 E-value=15 Score=33.48 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC
Q psy1676 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA 89 (343)
Q Consensus 12 ~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~ 89 (343)
++.+.+.+|+.++.++...+...++...+-.+++. +|... .....+-..|+..++++.|...++++ ..|..
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~- 263 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNE-KGLSRRGEAHLAVNDFELARADFQKVLQLYPNN- 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence 55667899999999999999999988777666553 33332 33445588899999999999999876 23321
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHH-HHHHHHHHh
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTA-HKNLVQALR 123 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A-~~~L~~A~~ 123 (343)
...++..|.++...+++.+| ...+..+|.
T Consensus 264 -----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 -----KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567889999999999998 445565555
No 174
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=82.12 E-value=1.1 Score=45.80 Aligned_cols=104 Identities=13% Similarity=-0.032 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCC
Q psy1676 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA 89 (343)
Q Consensus 12 ~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~ 89 (343)
.|+=.+.+++..++++...++.+++...+-.+++. +++. ....+.+-.+|+..++++.|...++++ .-|..
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~- 500 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE- 500 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-
T ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 34445667888888888888888888777655542 2222 234444567788889999998888865 22321
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++..|.++...++|.+ ..+|..|+...|..
T Consensus 501 -----~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 501 -----LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp -----SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred -----hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 3345677777777888888 77888887755543
No 175
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=81.82 E-value=4.2 Score=33.88 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHhhc---cHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 67 YLHYN---LYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 67 yl~~~---~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
+.+.+ +.+.+-.++..+.- . .++.+.-.++||+|.-+...++|.+|.+++..+++.-|.+
T Consensus 42 Lv~S~~~~~~~~gI~lLe~ll~-~-~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 42 LVRSKYNDDIRKGIVLLEELLP-K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCCHHHHHHHHHHHHHHHh-c-CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34555 55677777764411 0 1223678899999999999999999999999999966654
No 176
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=81.80 E-value=27 Score=30.81 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
.++-.+..+...|....+...+-.++. .+|... -....+-++|+..|+++.|...+++.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~P~~~-~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQ-----LSNQNG-EIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTTSCH-HHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCcch-hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356667777778888888766654443 234333 33445578999999999999999875
No 177
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.78 E-value=5.2 Score=29.52 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=35.3
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYC 277 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s 277 (343)
.+++..+||++||++ ...|...|.+|..+|+|.-.- ...|+-......++|.
T Consensus 26 ~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 26 KATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAWN 77 (81)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEES-SSSCEEEEC-------
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhcc
Confidence 389999999999995 889999999999999995332 2234444444444443
No 178
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=81.63 E-value=28 Score=30.83 Aligned_cols=106 Identities=7% Similarity=-0.000 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhh-------cccH-------HHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHh
Q psy1676 13 DLIAAKCYFYHSRVHEL-------TNNL-------DKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADK 78 (343)
Q Consensus 13 d~~~a~~~~y~~~~~e~-------~~~~-------~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~ 78 (343)
++-.+.+|+.++..... .|.+ +.++..+-.+++ ..+|.. ..+...+...+...++++.|..
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~----~~~p~~-~~~~~~~~~~~~~~~~~~~A~~ 120 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS----TLLKKN-MLLYFAYADYEESRMKYEKVHS 120 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT----TTTTTC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH----HhCccc-HHHHHHHHHHHHhcCCHHHHHH
Confidence 34566778888887753 3543 556654443333 123333 3456667888889999999999
Q ss_pred hhhhc-CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 79 LVKKS-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 79 li~k~-~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
+.++. ..++..+ .. .+.-.|.++...+++.+|...|..|+...|.
T Consensus 121 ~~~~al~~~p~~~--~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 121 IYNRLLAIEDIDP--TL--VYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHHHTSSSSCT--HH--HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHhccccCc--cH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99875 3332111 11 3445577888899999999999999996554
No 179
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=80.57 E-value=15 Score=30.80 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHh----hccHHHHHhhhhh
Q psy1676 11 TSDLIAAKCYFYHSRVHELTN----NLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKK 82 (343)
Q Consensus 11 ~~d~~~a~~~~y~~~~~e~~~----~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~----~~~~~~a~~li~k 82 (343)
+.+.=.+..+|.++.++.. + ....+...+.. +....++..+.. |-.+|.. .+++..|...+.+
T Consensus 44 a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~----A~~~g~~~a~~~----Lg~~y~~g~g~~~d~~~A~~~~~~ 114 (212)
T 3rjv_A 44 AAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK----AVEAGSKSGEIV----LARVLVNRQAGATDVAHAITLLQD 114 (212)
T ss_dssp HHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH----HHHTTCHHHHHH----HHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH----HHHCCCHHHHHH----HHHHHHcCCCCccCHHHHHHHHHH
Confidence 3333345566666666666 4 45554443332 222233333222 2344554 6667777766665
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhh
Q psy1676 83 SAFPENASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALRK 124 (343)
Q Consensus 83 ~~~p~~~~~~~~~~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~ 124 (343)
..--. +......=+|.+|.+|.. .+++.+|..+|..|...
T Consensus 115 A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 115 AARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 52111 111233334556666665 66677777777776663
No 180
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.53 E-value=4.5 Score=34.24 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=50.4
Q ss_pred HHHHHhhccHHHHHhhhhhc-----CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 64 LRNYLHYNLYDQADKLVKKS-----AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 64 lr~yl~~~~~~~a~~li~k~-----~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
++..+..+.|+.|..+-+.. .-|+..+..+..+-++|.|-.+..+++|.+|...|.+|+.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 67788999999999887752 2233457788899999999999999999999999999987
No 181
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=79.98 E-value=7.3 Score=31.57 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=35.4
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE---EeeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA---TLDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a---~Id~~ 263 (343)
..++|+++||+.+|+ |...+-..+.+|...|.|.+ .+|+.
T Consensus 20 ~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 20 NARTAYAELAKQFGV-SPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp CTTSCHHHHHHHHTS-CHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 378999999999999 59999999999999999975 46765
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=78.32 E-value=9.4 Score=28.47 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=48.0
Q ss_pred hccHHHHHhhhhhc-CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhc
Q psy1676 70 YNLYDQADKLVKKS-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLL 148 (343)
Q Consensus 70 ~~~~~~a~~li~k~-~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~ 148 (343)
.|+++.|...+.+. ... .........++.+|.++...++|.+|..+|..|+...|... . +...+-.+..-+
T Consensus 3 ~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~----~~~~l~~~~~~~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--A----LRVFYAMVLYNL 74 (117)
T ss_dssp ----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H----HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--H----HHHHHHHHHHHc
Confidence 45666677666654 221 11356778899999999999999999999999999776541 1 223344444556
Q ss_pred CCC
Q psy1676 149 GDI 151 (343)
Q Consensus 149 G~i 151 (343)
|+.
T Consensus 75 g~~ 77 (117)
T 3k9i_A 75 GRY 77 (117)
T ss_dssp TCH
T ss_pred CCH
Confidence 663
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=78.12 E-value=15 Score=30.67 Aligned_cols=108 Identities=8% Similarity=0.019 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHhhh-------cCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CC-CC-CC
Q psy1676 20 YFYHSRVHELTNNLDKVRSFLNARLRIATL-------RNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AF-PE-NA 89 (343)
Q Consensus 20 ~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~-------~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~-p~-~~ 89 (343)
++-.+...-..|+.+++....-.+++..-. .+++ ..+...+-+-..+.+.+.|+.|....+++ .+ .. ..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 444445555677777777666666653322 1111 11235555577888999999999888765 11 00 00
Q ss_pred ChHHHHHHH----HHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 90 SNNEWARFH----FYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 90 ~~~~~~~Y~----YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
-.++...-+ |-.|..+...++|.+|..+|..|+.-.|..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 011344445 899999999999999999999999955443
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=77.85 E-value=23 Score=34.75 Aligned_cols=108 Identities=5% Similarity=-0.066 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--hhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc------CC
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRI--ATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AF 85 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~--a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~------~~ 85 (343)
+-.|.++.-++.+|...|+.+++.+....++.. ..+..+....+..+|.|-.+|...|+|+.|..+..++ .+
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 346788888899999999999998888777643 3344455556677777799999999999999998865 23
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 86 PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 86 p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
.+..+ ....=.=.++..++-++.|.+|...|..|-.
T Consensus 428 G~~Hp--~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 428 GPSHP--ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CTTSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222234667778888899999988887754
No 185
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=77.43 E-value=13 Score=29.52 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHH-HHHhhCH--HHHHHHHHHHHhhCCcc
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRI-KAVRLEY--STAHKNLVQALRKAPQT 128 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri-~~~~~~y--~~A~~~L~~A~~~~~~~ 128 (343)
.....+-.+|+..++++.|...+.+. ..|.. ...++..|.+ +...++| .+|...|..++...|..
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 34455677888888998888888765 22321 3456677777 7778888 88888888888866543
No 186
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=77.00 E-value=18 Score=31.99 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 60 INCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 60 ~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...+-..|+..++|+.|...+++. ..|. ...+++..|.++...++|.+|...+..|+...|..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 344567889999999999999865 2332 24678899999999999999999999999966543
No 187
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=76.78 E-value=27 Score=27.91 Aligned_cols=31 Identities=13% Similarity=-0.121 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
..+|..|.++...+++.+|..+|..++...|
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 4456667777777777777777777776444
No 188
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=76.42 E-value=45 Score=30.29 Aligned_cols=120 Identities=13% Similarity=-0.001 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CCCCCCChHHHHHH
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPENASNNEWARF 97 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~p~~~~~~~~~~Y 97 (343)
++--|+...-..++.++++..+-.... ..|... ..-.+-.+|++.+.++.|...+.+. ..| .+.....-
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~~a 173 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHHHH
Confidence 344577778788888888876643222 223222 2223345899999999999999854 222 12223446
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhC--CccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 98 HFYLGRIKAVRLEYSTAHKNLVQALRKA--PQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~--~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
+|++|.++...+++.+|..+|.++.... |.. ... ...+.-.+..-+|+...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~----~~d-a~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEAC----ARA-IAWYLAMARRSQGNESA 226 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT----HHH-HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc----cHH-HHHHHHHHHHHcCCHHH
Confidence 8899999999999999999999998632 321 111 22334445556777544
No 189
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=76.34 E-value=4.4 Score=37.81 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhhcc----cccChHHHHHHhCCCCHHHHHHHH
Q psy1676 179 GELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASY----SRITPTKIAEKLGLESPEDAEFII 247 (343)
Q Consensus 179 Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~ir~i~~~y----s~Isl~dIa~~l~l~s~~e~E~il 247 (343)
||...|=+.+..-...+... .+++..-..+.+..++.++++| ..+|++.+++.|+++|++|++..+
T Consensus 177 gNY~rFFrL~~~~~~pyL~a---clle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMG---FFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHH---HHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 77777777766422222111 2344444455566677778888 489999999999999899988777
No 190
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=75.87 E-value=5.8 Score=37.14 Aligned_cols=73 Identities=10% Similarity=-0.089 Sum_probs=51.9
Q ss_pred CCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-C-CCC---CCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 51 NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-A-FPE---NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 51 ~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~-~p~---~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
.+....+.+.|.|-.+|...|+++.|...+.++ . ++. .......+.-+.-.|.+|...++|.+|..++..|+.
T Consensus 45 ~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 45 QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555688899999999999999999888764 1 111 011122333455679999999999999999999986
No 191
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=75.67 E-value=4.9 Score=29.47 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=32.9
Q ss_pred hcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 221 ASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 221 ~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
....+++++++|+.+++ |+.-+...+..|...|.|.
T Consensus 12 ~~~g~vsv~eLa~~l~V-S~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 12 ALRGRMEAAQISQTLNT-PQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHSCSBCHHHHHHHTTC-CHHHHHHHHHHHHHHTSEE
T ss_pred HHcCCCcHHHHHHHHCc-CHHHHHHHHHHHHHCCCEE
Confidence 45688999999999999 5999999999999999984
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=74.23 E-value=11 Score=27.46 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 95 ~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...+|..|.++...++|.+|..+|..|+...|..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4567899999999999999999999999976654
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=73.68 E-value=24 Score=33.74 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc-CC-CCCC
Q psy1676 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AF-PENA 89 (343)
Q Consensus 12 ~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~-~~-p~~~ 89 (343)
++.+.+.+|+..+.++...++...+...+-.++.. ++... .....+-..|+..++|+.|...++++ .+ |.
T Consensus 312 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-- 383 (457)
T 1kt0_A 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-----DSANE-KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-- 383 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Confidence 45667899999999999999999888777665552 33332 23344578899999999999999876 22 32
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHH-HHHHHh
Q psy1676 90 SNNEWARFHFYLGRIKAVRLEYSTAHKN-LVQALR 123 (343)
Q Consensus 90 ~~~~~~~Y~YY~Gri~~~~~~y~~A~~~-L~~A~~ 123 (343)
....++.+|.++...+++.+|... +...|.
T Consensus 384 ----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 ----NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123466788999999999988654 333443
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=73.59 E-value=35 Score=28.42 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhc----cHHHHHhhhhhcCCC
Q psy1676 11 TSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYN----LYDQADKLVKKSAFP 86 (343)
Q Consensus 11 ~~d~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~----~~~~a~~li~k~~~p 86 (343)
+.+.=.+..+|.++..+...+....+...+.. +....++..+..+ -.+|.. + ++..|...+++..-+
T Consensus 12 aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~----a~~~g~~~a~~~l----g~~y~~-~g~~~~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 12 QAEAGDRRAQYYLADTWVSSGDYQKAEYWAQK----AAAQGDGDALALL----AQLKIR-NPQQADYPQARQLAEKAVEA 82 (212)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH----HHHTTCHHHHHHH----HHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHH----HHHcCCHHHHHHH----HHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence 33444567789999999888888888766554 3333444443333 444666 6 999999999987332
Q ss_pred CCCChHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhhCC
Q psy1676 87 ENASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 87 ~~~~~~~~~~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~~~ 126 (343)
. ...=+|.+|.+|.. .+++.+|..+|..|...-+
T Consensus 83 g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 83 G------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp T------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred C------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 2 12234677888876 8899999999999999655
No 195
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=72.93 E-value=9.9 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
..++.++||+.++++ ...+-..+..|...|.|...
T Consensus 13 ~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe
Confidence 469999999999995 99999999999999999743
No 196
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=71.82 E-value=8.4 Score=31.00 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHhhccHHH---HHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 67 YLHYNLYDQ---ADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 67 yl~~~~~~~---a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..+.++... +-.++... +.. .+....-.|.||+|.-+.-.++|.+|..++...++.-|.+
T Consensus 45 Lv~S~~~~d~~~GI~lLe~l-~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 45 LVRTRYNDDIRKGIVLLEEL-LPK-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HTTSSSHHHHHHHHHHHHHH-TTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCCHHHHHHHHHHHHHH-Hhc-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 344554444 44444433 111 1234788999999999999999999999999999976654
No 197
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.73 E-value=8.4 Score=30.94 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=35.0
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE---eeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT---LDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~---Id~~ 263 (343)
..++|.++||+.+|+ |...+-..+.+|...|.|..+ +|+.
T Consensus 17 ~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 17 DSRLSMRELGRKIKL-SPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp CSCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 478999999999999 599999999999999999754 5654
No 198
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=71.72 E-value=5.1 Score=30.11 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=34.4
Q ss_pred hcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEe
Q psy1676 221 ASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATL 260 (343)
Q Consensus 221 ~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~I 260 (343)
....+++++++|+.+++ |+.-+...+..|...|.|.=.-
T Consensus 12 ~~~g~vsv~eLA~~l~V-S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 12 ALQGRMEAKQLSARLQT-PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHSCSEEHHHHHHHTTC-CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHcCCCcHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEe
Confidence 45688999999999999 5999999999999999996553
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=70.27 E-value=22 Score=24.25 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
.....++..|.++...++|.+|..+|..|+...|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 456678899999999999999999999999976653
No 200
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=70.19 E-value=12 Score=27.76 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc--chHHHHHHHHHHHHHHHHhcCCC
Q psy1676 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT--AAVGFRQTTQKLAVVVELLLGDI 151 (343)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~--sa~~~~~~i~K~li~v~LL~G~i 151 (343)
=+|-.|.++..+++|..|..+|..|+...+.. .... ...+...+..+..-+|++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~-~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCccc-HHHHHHHHHHHHHHccCH
Confidence 46789999999999999999999999832111 1111 334555555555556654
No 201
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=69.70 E-value=2.8 Score=34.08 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=62.6
Q ss_pred HHHHHHhCCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHHhH
Q psy1676 172 LTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAI 251 (343)
Q Consensus 172 L~~Av~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI 251 (343)
+.+-+..|.+.-=+-.+..+......++-+.++..+.. -......-+|.++||++++++ +.++..+|.+|+
T Consensus 6 l~~~~~~G~~~ip~~LL~~y~~LgLs~~E~~lLl~L~~--------~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~~L~ 76 (135)
T 2v79_A 6 FIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKM--------HLEKGSYFPTPNQLQEGMSIS-VEECTNRLRMFI 76 (135)
T ss_dssp HHHHHHHCEEEEEHHHHHHHHHHTCCHHHHHHHHHHHH--------HHTTTCCSCCHHHHHTTSSSC-HHHHHHHHHHHH
T ss_pred HHHHHHcCCccchHHHHHHHHHhCCCHHHHHHHHHHHH--------HHhcCCCCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 33344555544444555555555555555444432222 112234568899999999995 999999999999
Q ss_pred HcCCceE--EeeCCCceEEEccCccccccccchHHHHHHHHHHHHh
Q psy1676 252 RDGVIEA--TLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDL 295 (343)
Q Consensus 252 ~~G~I~a--~Id~~~g~v~~~~~~~v~s~~ep~~~~~~rI~~cl~l 295 (343)
.+|+|.= +.|.. |-. ...|+ +..+-.++..++.-
T Consensus 77 ~KGlI~i~~~~d~~-g~~-----~~~yd----L~pL~ekL~~~~~~ 112 (135)
T 2v79_A 77 QKGFLFIEECEDQN-GIK-----FEKYS----LQPLWGKLYEYIQL 112 (135)
T ss_dssp HHTSCEEEEEECTT-CCE-----EEEEE----CHHHHHHHHHHHHH
T ss_pred HCCCEEEEeEecCC-Cce-----EEEee----HHHHHHHHHHHHHH
Confidence 9999953 22332 221 23343 34456667666643
No 202
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.61 E-value=9.4 Score=31.29 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.4
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE---EeeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA---TLDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a---~Id~~ 263 (343)
..++|.++||+.+|+ |...+-..+.+|...|.|.+ .+|+.
T Consensus 22 ~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 22 NGRLTNVELSERVAL-SPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 467999999999999 59999999999999999975 45554
No 203
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=69.20 E-value=20 Score=28.31 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=42.8
Q ss_pred cChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccccccchHHHHHHHHHHHHhhH
Q psy1676 226 ITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFHQRIAFCLDLHN 297 (343)
Q Consensus 226 Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s~~ep~~~~~~rI~~cl~l~~ 297 (343)
+|.++||..++++ +.+|...+.+|+..|+|.=.-+..+. ....++|+ +.-+-.++..++.-..
T Consensus 52 ps~~~LA~~l~~s-~~~V~~~l~~Le~kGlI~~~~~~~~~----g~~~~~Yd----l~pl~~kL~~~~~~~~ 114 (128)
T 2vn2_A 52 PTPAELAERMTVS-AAECMEMVRRLLQKGMIAIEEHTDEQ----GIRNEKYT----LEPLWEKLVHHLYTQA 114 (128)
T ss_dssp CCHHHHHHTSSSC-HHHHHHHHHHHHHTTSSEECC--------------CEE----CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeEECCC----CcEEEEEe----hHHHHHHHHHHHHHHH
Confidence 7999999999995 99999999999999999544333221 22234565 4557778877776543
No 204
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.90 E-value=9 Score=30.92 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=34.8
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE---eeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT---LDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~---Id~~ 263 (343)
..++|.++||+.+|+ |...+-..+.+|...|.|.+. +|+.
T Consensus 21 ~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 21 NSRLTYRELADILNT-TRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp CTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 478999999999999 599999999999999999754 5654
No 205
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=68.34 E-value=38 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=35.8
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHHHHHHCCCEEecCCcccC
Confidence 468999999999995 89999999999999999877776554
No 206
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=68.30 E-value=49 Score=31.68 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcch-hHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEG-QAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~-~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
+.+|.-+++.....+.++.++..+-.++.. .+.. ..++...+ -.|...|+++.|..++.+. ..|.+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~~~~~~~~~~~a~-~~~~~~~~~~~A~~~~e~al~~~p~~----- 424 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTRHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDI----- 424 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TTCCTHHHHHHHH-HHHHHTCCHHHHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----cCCchHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHCCCC-----
Confidence 357888888888888888888766555432 2222 22332222 2234689999999999865 23431
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
..+..-.|.+....+++.+|...|..|+..+|.
T Consensus 425 -~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 425 -PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp -HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred -HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 234455666777889999999999999996553
No 207
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=67.36 E-value=11 Score=31.50 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=34.7
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE---EeeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA---TLDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a---~Id~~ 263 (343)
-.++|.++||+.+|++ ...+-..+.+|...|.|.+ .+|+.
T Consensus 29 ~~~~s~~eLA~~lglS-~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 29 DARLTISELSEQLKKP-ESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp CTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 3689999999999994 9999999999999999964 45665
No 208
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=66.83 E-value=8.3 Score=31.79 Aligned_cols=42 Identities=38% Similarity=0.394 Sum_probs=36.0
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce---EEeeCCC
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE---ATLDREK 264 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~---a~Id~~~ 264 (343)
.-.++|.++||+.+|+ |+..+-..+.+|...|.|. |.+|+..
T Consensus 14 ~~~~~s~~~la~~lg~-s~~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 14 EDSTLAVADLAKKVGL-STTPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp TCSCSCHHHHHHHHTC-CHHHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 4578999999999999 5999999999999999987 4566653
No 209
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=66.74 E-value=12 Score=27.22 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=30.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
-.+|+.+||..+|+ |+.-|...|..|-.+|+|.-
T Consensus 23 ~~psv~EIa~~lgv-S~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 23 APVKTRDIADAAGL-SIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp SCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEe
Confidence 35899999999999 68889999999999999953
No 210
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=66.63 E-value=8.3 Score=37.44 Aligned_cols=93 Identities=9% Similarity=-0.096 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChH
Q psy1676 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNN 92 (343)
Q Consensus 15 ~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~ 92 (343)
-.+.+|+..+.++...++.+++...+..+++. ++.. ......+-..|.+.++++.|...++++ ..|....
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-- 109 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD-- 109 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT--
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Confidence 34778999999999999999888777655442 3433 334445688999999999999999875 2343211
Q ss_pred HHHHHHHHHHHH--HHHhhCHHHHHHHHH
Q psy1676 93 EWARFHFYLGRI--KAVRLEYSTAHKNLV 119 (343)
Q Consensus 93 ~~~~Y~YY~Gri--~~~~~~y~~A~~~L~ 119 (343)
.++..|.+ +..+++|.+|...+.
T Consensus 110 ----~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 110 ----AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ----HHHHHHHHHHHHHHHHHCCC-----
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 23445666 777899999999998
No 211
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=66.54 E-value=43 Score=34.29 Aligned_cols=170 Identities=12% Similarity=0.141 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhh------cCCcc----------hhHHHHHHHHHHHHhhccHHHHHhhh
Q psy1676 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATL------RNDFE----------GQAVLINCLLRNYLHYNLYDQADKLV 80 (343)
Q Consensus 17 a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~------~~~~~----------~~~~l~n~Llr~yl~~~~~~~a~~li 80 (343)
..+|+.|+...|..+.++.+|..+-.++..... .+.|. +...+.-..++...+.+..+.|..++
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345888999999999999999887666653210 11121 12334555567777788999999999
Q ss_pred hhc-CC-CCCCChHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC-hhh
Q psy1676 81 KKS-AF-PENASNNEWARFHFYLGRIKA-VRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD-RQI 156 (343)
Q Consensus 81 ~k~-~~-p~~~~~~~~~~Y~YY~Gri~~-~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~-~~~ 156 (343)
.++ .. |... .+ .|. ..+.+.. ..+++..|...|+.++..+|.. ..+...+..+. +-.|++.. +.+
T Consensus 458 ~~A~~~~~~~~--~~--lyi-~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe----~~~~~~~~AR~l 526 (679)
T 4e6h_A 458 GKCRRLKKLVT--PD--IYL-ENAYIEYHISKDTKTACKVLELGLKYFATD--GEYINKYLDFL----IYVNEESQVKSL 526 (679)
T ss_dssp HHHHHTGGGSC--TH--HHH-HHHHHHHTTTSCCHHHHHHHHHHHHHHTTC--HHHHHHHHHHH----HHHTCHHHHHHH
T ss_pred HHHHHhcCCCC--hH--HHH-HHHHHHHHhCCCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH----HhCCCHHHHHHH
Confidence 875 22 3211 11 122 2233333 3456999999999999987764 33333444433 22455443 334
Q ss_pred hhhH--------hHhhhhhhhHHHHHHHHhCCHHHHHHHHHhccccccccc
Q psy1676 157 FRQA--------VLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDY 199 (343)
Q Consensus 157 ~~~~--------~l~~~l~~Y~~L~~Av~~Gdl~~f~~~l~~~~~~f~~d~ 199 (343)
|..- ........|..+-. ..||+....++.++....|-+++
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~--~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFES--KVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCc
Confidence 4310 01112223323322 35888888888777777776654
No 212
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=66.30 E-value=21 Score=25.98 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
..++.++||+.++++ ...+-..+.+|...|.|...-+
T Consensus 29 ~~~~~~ela~~l~is-~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 578999999999995 8899999999999999986653
No 213
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=66.11 E-value=5.7 Score=32.18 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=45.1
Q ss_pred HHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 63 LLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 63 Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
+...++..|+++.|...+++..- ..+.....++..|.++...+++.+|...|..++...|
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 35678889999999988886521 1123355677889999999999999999988887555
No 214
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=65.64 E-value=37 Score=31.56 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhccHHHHHhhhhhcC--CCCC----------CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCC
Q psy1676 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPEN----------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 59 l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~----------~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~ 126 (343)
....+-..|++.++|+.|....+++. .+.. .........++..|.++...++|.+|..++..|+...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 34556778899999999998887652 1100 02345677888999999999999999999999999666
Q ss_pred cc
Q psy1676 127 QT 128 (343)
Q Consensus 127 ~~ 128 (343)
..
T Consensus 305 ~~ 306 (370)
T 1ihg_A 305 SN 306 (370)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 215
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=65.47 E-value=15 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=35.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..++..+||+.++++ ..-++.++..|...|+|...=....||.--.
T Consensus 25 ~~~s~~ela~~~~i~-~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS-EHYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CcCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 568999999999995 9999999999999999965432234555443
No 216
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.42 E-value=15 Score=29.91 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 92 ~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...-.|.||++.-+.-.++|.+|.++....++.-|.+
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4678899999999999999999999999999977754
No 217
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.08 E-value=78 Score=30.38 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccHHHHHhhhhhcCC--CCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy1676 58 VLINCLLRNYLHYNLYDQADKLVKKSAF--PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQAL 122 (343)
Q Consensus 58 ~l~n~Llr~yl~~~~~~~a~~li~k~~~--p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (343)
-+.-.|.++|...|++..|..++..... -...+..+.+.|+..-.+++...+||..|...+..+-
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556789999999999999999986521 1234567999999999999999999999998888764
No 218
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=62.56 E-value=27 Score=25.47 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..++..|.++...++|.+|..+|..|+...|..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999976653
No 219
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=62.09 E-value=17 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=34.4
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE---eeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT---LDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~---Id~~ 263 (343)
..++|.++||+.+|++ ...+-..+.+|...|.|..+ +|+.
T Consensus 19 ~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 19 DGRATLSELATRAGLS-VSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 3689999999999994 99999999999999999644 4554
No 220
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=61.28 E-value=16 Score=30.27 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=38.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
..+|..+||..++++ +.-++.++.+|...|.|...=-...||.--.+
T Consensus 43 ~~~s~~eIA~~~~i~-~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNLS-EHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 369999999999995 99999999999999999866444456655443
No 221
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=61.02 E-value=25 Score=32.01 Aligned_cols=101 Identities=10% Similarity=0.056 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC--CCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~--~p~~~~~~~ 93 (343)
...+|+.++.++...+....+...+-.+++. ++... .....+-..|+..++++.|...+.++. .|.+
T Consensus 229 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~----- 297 (338)
T 2if4_A 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-----EEKNP-KALFRRGKAKAELGQMDSARDDFRKAQKYAPDD----- 297 (338)
T ss_dssp HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----
Confidence 3358999999999999999888777655542 33332 334455788999999999999999762 2321
Q ss_pred HHHHHHHHHHH-HHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 94 WARFHFYLGRI-KAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 94 ~~~Y~YY~Gri-~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
...++.++.+ ....+.+..|...|..+|...|..
T Consensus 298 -~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 298 -KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 1223345555 345667788888888888866543
No 222
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=59.94 E-value=11 Score=31.38 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=34.7
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE---EeeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA---TLDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a---~Id~~ 263 (343)
..++|+++||+++|+ |...+-..+.+|...|.|.+ .+|+.
T Consensus 39 ~~~~s~~eLA~~lgl-S~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 39 DGKAPLREISKITGL-AESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 468999999999999 59999999999999999965 35654
No 223
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=59.91 E-value=29 Score=26.22 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=36.9
Q ss_pred ccccChHHHHHHh-CCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKL-GLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l-~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...+++++|++.+ +++ ..-+-..|..|...|+|....+..++
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4678999999999 995 89999999999999999988886553
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=59.14 E-value=11 Score=27.93 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=37.2
Q ss_pred HHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 73 YDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 73 ~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
.+.|..++++. .-| .-++=.+++|.++..+++|.+|..+++.++...|.
T Consensus 25 ~~~A~~~l~~AL~~dp------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEP------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 67888887765 122 22344567899999999999999999999995554
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.79 E-value=19 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..=.|.||++.-+.-.++|.+|.++....++.-|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 567799999999999999999999999999976654
No 226
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=58.31 E-value=14 Score=29.86 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=34.3
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE---EeeCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA---TLDRE 263 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a---~Id~~ 263 (343)
..++|.++||+.+|+ |...+-..+.+|...|.|.+ .+|+.
T Consensus 19 ~~~~s~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 19 DGKAPLREISKITGL-AESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp CTTCCHHHHHHHHCS-CHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 368999999999999 59999999999999999965 35553
No 227
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=58.15 E-value=25 Score=27.32 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=35.8
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d 88 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVDKLEEMGLVVRVRDRED 88 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHHHHHHCCCEEeecCCCC
Confidence 6779999999999995 8999999999999999987666544
No 228
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=58.13 E-value=39 Score=28.03 Aligned_cols=68 Identities=21% Similarity=0.094 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHhhhhhc-----CCCCC---CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 57 AVLINCLLRNYLHYNLYDQADKLVKKS-----AFPEN---ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 57 ~~l~n~Llr~yl~~~~~~~a~~li~k~-----~~p~~---~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
+..+...-..+++.++|+.|....++. .+|+. .........++-.|.++...++|.+|..++..|+..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444567788999999999888865 22221 111234457888999999999999999999999986
No 229
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=57.99 E-value=47 Score=25.36 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=39.0
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
.-.++ |..++|..+|+ |..-|...+..|..+|.|. ..+..|+.+...
T Consensus 29 ~G~~lPs~~~La~~~~v-Sr~tvr~al~~L~~~Gli~--~~~~~G~~V~~~ 76 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQI-NPLTVSKAYQSLLDDNVIE--KRRGLGMLVKAG 76 (113)
T ss_dssp TTCEECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EETTTEEEECTT
T ss_pred CCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEE--EecCCeEEEeCC
Confidence 44788 79999999999 5899999999999999984 457778877543
No 230
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=57.61 E-value=52 Score=23.87 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=33.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDR 262 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~ 262 (343)
..++..+|+..++++ ...+-.+|..|...|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is-~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEeec
Confidence 568999999999995 99999999999999999876654
No 231
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=57.43 E-value=12 Score=30.35 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=36.7
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..+|..+||..++++ +.-++.++.+|-..|.|...=-...||.--.
T Consensus 27 ~~~s~~~IA~~~~i~-~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLS-DLYLEQLVGPLRNAGLIRSVRGAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECSSSSSEEEESS
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCEEEecCCCCCCeeecC
Confidence 369999999999995 9999999999999999976433334555443
No 232
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=56.69 E-value=18 Score=28.89 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=35.3
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE---EeeCC
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA---TLDRE 263 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a---~Id~~ 263 (343)
...++|.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 14 ~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIP-KATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp TCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 34589999999999994 9999999999999999976 45654
No 233
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=55.82 E-value=49 Score=23.85 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=32.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
..++..+|++.++++ ...+-..+..|...|.|...-+
T Consensus 37 ~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 37 PGTSAGELTRITGLS-ASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp CSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 468999999999995 8999999999999999976543
No 234
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=55.73 E-value=29 Score=27.00 Aligned_cols=90 Identities=20% Similarity=0.005 Sum_probs=54.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHh----hccHHHHHhhhhhcCCCCCCChHHHHHHH
Q psy1676 23 HSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPENASNNEWARFH 98 (343)
Q Consensus 23 ~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~----~~~~~~a~~li~k~~~p~~~~~~~~~~Y~ 98 (343)
++..++....+..+. ..++.++...++..+.. |-.+|.. .+++..|...++++.-.. ...=.
T Consensus 31 lg~~y~~g~~~~~A~----~~~~~Aa~~g~~~a~~~----Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~ 96 (138)
T 1klx_A 31 LSLVSNSQINKQKLF----QYLSKACELNSGNGCRF----LGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGC 96 (138)
T ss_dssp HHHHTCTTSCHHHHH----HHHHHHHHTTCHHHHHH----HHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHH
T ss_pred HHHHHHcCCCHHHHH----HHHHHHHcCCCHHHHHH----HHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHH
Confidence 444555444444422 34444554444444333 3455666 788888888888652111 11224
Q ss_pred HHHHHHHHH----hhCHHHHHHHHHHHHhhCC
Q psy1676 99 FYLGRIKAV----RLEYSTAHKNLVQALRKAP 126 (343)
Q Consensus 99 YY~Gri~~~----~~~y~~A~~~L~~A~~~~~ 126 (343)
|.+|.+|.. .+|+.+|..+|..|...-+
T Consensus 97 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 97 LILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 567777777 8899999999999988533
No 235
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=55.65 E-value=46 Score=26.11 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=39.1
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
.-.+| |..++|..+|+ |..-|...+..|..+|+|. ..+..|+.+..
T Consensus 31 ~G~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~Gli~--~~~g~G~~V~~ 77 (126)
T 3by6_A 31 ANDQLPSVRETALQEKI-NPNTVAKAYKELEAQKVIR--TIPGKGTFITG 77 (126)
T ss_dssp TTCEECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EETTTEEEECS
T ss_pred CCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEE--EecCCeEEEcc
Confidence 44789 89999999999 5999999999999999994 56777887754
No 236
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=55.25 E-value=51 Score=25.72 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=39.0
Q ss_pred hcccccC-hHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 221 ASYSRIT-PTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 221 ~~ys~Is-l~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..-.++| ..++|..+|+ |..-|...+..|..+|+|. ..+..|+.+..
T Consensus 32 ~~g~~Lps~~~La~~~~v-Sr~tvr~Al~~L~~~G~i~--~~~g~G~~V~~ 79 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAV-NPNTVSRAYQELERAGYIY--AKRGMGSFVTS 79 (125)
T ss_dssp CTTCBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EETTTEEEECC
T ss_pred CCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCeEE--EecCCEEEEec
Confidence 3447895 9999999999 5999999999999999994 45667887764
No 237
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=55.08 E-value=39 Score=25.26 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 211 VIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 211 v~r~~ir~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
++-..++.+. .. ++.++||..++++ +..+..++-.|...|+|.-. .+||....+
T Consensus 9 Ii~~IL~~i~--~~-~~~t~La~~~~ls-~~~~~~~l~~L~~~GLI~~~---~~~~~LT~k 62 (95)
T 1r7j_A 9 IIQAILEACK--SG-SPKTRIMYGANLS-YALTGRYIKMLMDLEIIRQE---GKQYMLTKK 62 (95)
T ss_dssp HHHHHHHHHT--TC-BCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE---TTEEEECHH
T ss_pred HHHHHHHHHH--cC-CCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEE---CCeeEEChh
Confidence 3444445554 34 9999999999995 99999999999999999644 335444433
No 238
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=55.01 E-value=51 Score=24.99 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=36.1
Q ss_pred cccChHHHHHHh-CCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKL-GLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l-~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..+++++|++.+ +++ ..-+-..|..|...|+|....+..++
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 568999999999 995 89999999999999999988876543
No 239
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=54.70 E-value=48 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=12.8
Q ss_pred HHHHHHHHHH----hhCHHHHHHHHHHHHh
Q psy1676 98 HFYLGRIKAV----RLEYSTAHKNLVQALR 123 (343)
Q Consensus 98 ~YY~Gri~~~----~~~y~~A~~~L~~A~~ 123 (343)
.|.+|.++.. .+++.+|..+|..|..
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 3344444444 4555555555555544
No 240
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=54.36 E-value=25 Score=27.36 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=35.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+=.+|.+|...|+|.-.-++.+
T Consensus 40 ~~~t~~ela~~l~~~-~stvs~~l~~L~~~G~v~r~~~~~d 79 (152)
T 1ku9_A 40 KPLTISDIMEELKIS-KGNVSMSLKKLEELGFVRKVWIKGE 79 (152)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTTC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecCCC
Confidence 579999999999995 8899999999999999987766654
No 241
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=53.99 E-value=19 Score=29.16 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=40.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCccccccccchHHHH
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESADIYCTVEPQLAFH 286 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~~v~s~~ep~~~~~ 286 (343)
..++..+||..++++ +.-++.++..|...|.|...=- ..||.--. +++-.+=.+.+.+++
T Consensus 29 ~~~~~~~iA~~~~i~-~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~-~p~~Itl~dVi~a~e 88 (149)
T 1ylf_A 29 SLCTSDYMAESVNTN-PVVIRKIMSYLKQAGFVYVNRG-PGGAGLLK-DLHEITLLDVYHAVN 88 (149)
T ss_dssp GGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC----CCEEESS-CGGGCBHHHHHHHHC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEccC-CCceEeCC-ChhhCcHHHHHHHHc
Confidence 468999999999995 9999999999999999975433 34555443 333333333344443
No 242
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=53.83 E-value=61 Score=23.52 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=33.8
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDR 262 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~ 262 (343)
...++.++||+.++++ ..-+-.++..|...|+|.-.-+.
T Consensus 34 ~~~~t~~ela~~l~is-~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 34 EKPITSEELADIFKLS-KTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp CSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeccc
Confidence 4679999999999995 89999999999999999876543
No 243
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=53.58 E-value=21 Score=26.42 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=29.9
Q ss_pred cChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 226 ITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 226 Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
+|..+||+.||++ ...|-..|.+|-.+|+|..
T Consensus 31 ~sa~eLAk~LgiS-k~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNME-KREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEe
Confidence 9999999999995 8999999999999999954
No 244
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=53.32 E-value=88 Score=29.51 Aligned_cols=93 Identities=17% Similarity=0.076 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhh----cccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHh----hccHHHHHhhhhhcCCCCC
Q psy1676 17 AKCYFYHSRVHEL----TNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPEN 88 (343)
Q Consensus 17 a~~~~y~~~~~e~----~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~----~~~~~~a~~li~k~~~p~~ 88 (343)
+..+|.++..+.. .+....+...+..+ ...+++. -...|-.+|.. .++++.|...+.+..-+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a----~~~~~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 109 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRA----AEQGYTP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG- 109 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----HHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----HHCCCHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 4456677777666 55666555444333 2222222 22234556666 777777777777542111
Q ss_pred CChHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHh
Q psy1676 89 ASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALR 123 (343)
Q Consensus 89 ~~~~~~~~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~ 123 (343)
...-.|.+|.+|.. .+++.+|..+|..|..
T Consensus 110 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 110 -----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 11223445655555 5666666666666655
No 245
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=53.31 E-value=23 Score=28.47 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=36.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
.. +..+||+.++++ +.-++.++.+|...|.|...=- ..||.--.+
T Consensus 23 ~~-s~~~IA~~~~i~-~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~ 67 (145)
T 1xd7_A 23 KT-SSEIIADSVNTN-PVVVRRMISLLKKADILTSRAG-VPGASLKKD 67 (145)
T ss_dssp CC-CHHHHHHHHTSC-HHHHHHHHHHHHHTTSEECCSS-SSSCEESSC
T ss_pred CC-CHHHHHHHHCcC-HHHHHHHHHHHHHCCceEeecC-CCCceecCC
Confidence 35 999999999996 9999999999999999976544 455544443
No 246
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.44 E-value=32 Score=26.67 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=36.5
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
....++.++||+.++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCeeecCCCccc
Confidence 45679999999999995 89999999999999999876665443
No 247
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.30 E-value=29 Score=27.01 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=33.4
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~~Le~~glv~r~~~~~d 88 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLRELERGGLIVRHADPQD 88 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEC----
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCEeeCCCCCC
Confidence 4679999999999995 8999999999999999977665543
No 248
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=52.22 E-value=24 Score=27.21 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=35.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~~L~~~gli~~~~~~~d 83 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLKLLEESGYIIRKRNPDN 83 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCC
Confidence 469999999999995 8999999999999999987766544
No 249
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=51.93 E-value=18 Score=28.51 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=32.2
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
..++|.++||+.+|+ |...+-..+..|...|.|.+.
T Consensus 16 ~~~~~~~ela~~lg~-s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 16 DARTPFTEIAKKLGI-SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEecc
Confidence 367899999999999 599999999999999999654
No 250
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=51.91 E-value=45 Score=27.56 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHhhhhhc-C-CCCCCChHHHHHHHHHHHHHHHHh-----------hCHHHHHHHHHHHHhhCCcc
Q psy1676 73 YDQADKLVKKS-A-FPENASNNEWARFHFYLGRIKAVR-----------LEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 73 ~~~a~~li~k~-~-~p~~~~~~~~~~Y~YY~Gri~~~~-----------~~y~~A~~~L~~A~~~~~~~ 128 (343)
++.|...+++. . -|. ...-+|.+|..|... ++|.+|..+|..|+.-.|..
T Consensus 62 ~~eAi~~le~AL~ldP~------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 45777777654 2 232 233467889988876 49999999999999966654
No 251
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=51.84 E-value=18 Score=28.03 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=34.8
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCCCCC
Confidence 378999999999995 89999999999999999877766543
No 252
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.68 E-value=30 Score=26.58 Aligned_cols=41 Identities=10% Similarity=0.293 Sum_probs=35.8
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 378999999999995 89999999999999999877766554
No 253
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=51.42 E-value=18 Score=24.94 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=31.1
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
+---|.++.+++++|++ .++|=.++.+|=.+|.|+
T Consensus 22 sGGildI~~~a~kygV~-kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 22 NGGFLDIEHFSKVYGVE-KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp TTSEEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCEEeHHHHHHHhCCC-HHHHHHHHHHHHHCCCee
Confidence 44567889999999995 999999999999999995
No 254
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=51.10 E-value=27 Score=27.19 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=30.5
Q ss_pred cChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 226 ITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 226 Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC-------
T ss_pred CCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 9999999999995 89999999999999999877765544
No 255
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=50.84 E-value=18 Score=29.94 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=37.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..+|..+||+.++++ +.-++.++.+|-..|+|...=-...||.--.
T Consensus 27 ~~~s~~~IA~~~~is-~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (162)
T 3k69_A 27 SKVASRELAQSLHLN-PVMIRNILSVLHKHGYLTGTVGKNGGYQLDL 72 (162)
T ss_dssp SCBCHHHHHHHHTSC-GGGTHHHHHHHHHTTSSEEECSTTCEEECCS
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeecCCCCCeEecC
Confidence 469999999999995 9999999999999999976533344565443
No 256
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=49.63 E-value=23 Score=28.42 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=36.3
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 479999999999995 88999999999999999888776654
No 257
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.29 E-value=35 Score=26.41 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=36.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 46 ~~~~~~~la~~l~~s-~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 46 GPKRPGELSVLLGVA-KSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCC
Confidence 468999999999995 89999999999999999887776654
No 258
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=48.83 E-value=33 Score=26.33 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=36.7
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGY 266 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~ 266 (343)
..++.++||+.++++ ...+-.+|.+|...|+|.-.-++.++-
T Consensus 42 ~~~~~~ela~~l~~s-~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 42 PGIKQDELATFFHVD-KGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp TTCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 578999999999995 899999999999999998877766543
No 259
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=48.24 E-value=65 Score=25.38 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=38.8
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
+-.+| |..++|..+|+ |..-|...+..|..+|+|. ..+..|+.+..
T Consensus 24 ~G~~LPse~~La~~~gv-Sr~tVr~Al~~L~~~Gli~--~~~g~G~~V~~ 70 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRI-NPATARNGLTLLVEAGILY--KKRGIGMFVSA 70 (129)
T ss_dssp TTSCBCCHHHHHHHTTC-CHHHHHHHHHHHHTTTSEE--EETTTEEEECT
T ss_pred CCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEE--EecCCEEEEec
Confidence 34788 79999999999 5999999999999999994 56777887754
No 260
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=48.04 E-value=1.7e+02 Score=26.86 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=82.7
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHhhhcCCc---ch-hHHHHHHH-HHHHHhhc--cHHHHHhhhhhc--CCCCCCChH
Q psy1676 22 YHSRVHELTNNLDKVRSFLNARLRIATLRNDF---EG-QAVLINCL-LRNYLHYN--LYDQADKLVKKS--AFPENASNN 92 (343)
Q Consensus 22 y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~---~~-~~~l~n~L-lr~yl~~~--~~~~a~~li~k~--~~p~~~~~~ 92 (343)
-..+++-..++...++..+-...+ .++ ++ ...++++. ..+.+..| .+..|-.++... .+|. ..+
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~-----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~~~ 213 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTN-----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT--WKT 213 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--ccc
Confidence 344555566666666655543222 134 22 22344432 33455555 899998888864 3442 112
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc--cc---hHHHHHHHHHHHHHHHHhcCCCCChhhhhhHhHhhhhh
Q psy1676 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ--TA---AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALS 167 (343)
Q Consensus 93 ~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~--~s---a~~~~~~i~K~li~v~LL~G~iP~~~~~~~~~l~~~l~ 167 (343)
..+.|- .++.+++|.+|...|..+....|. .. ... -...+.-+|++...+|+ +...++.+ ++ .+.
T Consensus 214 ~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk-~a~~l~~q--L~-~~~ 283 (310)
T 3mv2_B 214 QLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY-KPTFLANQITLALMQGL-DTEDLTNQ--LV-KLD 283 (310)
T ss_dssp HHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC-TTHHHHHH--HH-HTT
T ss_pred HHHHHH-----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC-CHHHHHHHHHHHHHhCh-HHHHHHHH--HH-HhC
Confidence 222222 788999999999999976653221 00 011 12245567778888898 44333331 11 222
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHhcc
Q psy1676 168 PYFQLTQAVRMGELQKFNEVLTTYG 192 (343)
Q Consensus 168 ~Y~~L~~Av~~Gdl~~f~~~l~~~~ 192 (343)
|=.+++.-+...+ ..|++++.+|.
T Consensus 284 P~hp~i~d~~~k~-~~Fd~~~~ky~ 307 (310)
T 3mv2_B 284 HEHAFIKHHQEID-AKFDELVRKYD 307 (310)
T ss_dssp CCCHHHHHHHHHH-HHHHHHHHTCC
T ss_pred CCChHHHHHHHHH-HHHHHHHHHhc
Confidence 3334555554443 67888887774
No 261
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.88 E-value=29 Score=26.71 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=36.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGY 266 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~ 266 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++-
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 458999999999995 899999999999999998777766543
No 262
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=47.29 E-value=65 Score=23.42 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.3
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEe
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATL 260 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~I 260 (343)
..++.++|+..+|++ ...+-..+..|...|.|...-
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEE
Confidence 678999999999995 889999999999999997653
No 263
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=47.26 E-value=13 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=30.0
Q ss_pred ccChHHHHHHhCCCCHHH-HHHHHHHhHHcCCce
Q psy1676 225 RITPTKIAEKLGLESPED-AEFIIAKAIRDGVIE 257 (343)
Q Consensus 225 ~Isl~dIa~~l~l~s~~e-~E~ila~lI~~G~I~ 257 (343)
.++.++||+.++++ ... +-.+|.+|...|+|.
T Consensus 30 ~~t~~eLa~~l~is-~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVS-EKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCC-HHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCC-chHHHHHHHHHHHHCCCee
Confidence 69999999999995 888 999999999999997
No 264
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=46.61 E-value=1.6e+02 Score=27.80 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=46.1
Q ss_pred HHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
.+.-.++..++++.|...+.+..--. + + ...+..+|.++...|++.+|..+|..|++..|.
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln--~-s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLE--M-S--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--C-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC--C-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 33444566799999999998762111 1 1 234578899999999999999999999997664
No 265
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=46.60 E-value=55 Score=27.73 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=32.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
.++|.++||..+|+ |...+-..+..|...|.|...
T Consensus 32 ~~~s~~eLA~~lgl-S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGK-TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999 499999999999999999887
No 266
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=46.53 E-value=30 Score=26.68 Aligned_cols=40 Identities=3% Similarity=0.189 Sum_probs=34.8
Q ss_pred ccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 225 RITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 225 ~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
.++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 68999999999995 88999999999999999876665443
No 267
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=46.39 E-value=26 Score=27.20 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=34.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~~Le~~gli~r~~~~~d 81 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIKRLEEQGFIYRQEDASN 81 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCC
Confidence 468999999999995 8999999999999999987766544
No 268
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=46.16 E-value=1.9e+02 Score=27.09 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhh----ccHHHHHhhhhhcCCCCCCChHHH
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY----NLYDQADKLVKKSAFPENASNNEW 94 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~----~~~~~a~~li~k~~~p~~~~~~~~ 94 (343)
++|.++.++...+.-.....- +..++.+...+++..+. +..|-.+|... +++..|...+++.. |...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A-~~~~~~aa~~g~~~a~~--~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~----- 248 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAEL-LKQMEAGVSRGTVTAQR--VDSVARVLGDATLGTPDEKTAQALLEKIA-PGYP----- 248 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHTTCSCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGST-----
T ss_pred HHHHHHHHHHHcCCcccHHHH-HHHHHHHHHCCCHHHHH--HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCH-----
Confidence 455555555554422121111 13334444444444331 12223344333 67777777777765 4321
Q ss_pred HHHHHHHHHH-H--HHhhCHHHHHHHHHHHHhh
Q psy1676 95 ARFHFYLGRI-K--AVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 95 ~~Y~YY~Gri-~--~~~~~y~~A~~~L~~A~~~ 124 (343)
.=.|.+|.+ + ...+++.+|..+|..|...
T Consensus 249 -~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 249 -ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp -HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 113345554 3 3578999999999988874
No 269
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=46.02 E-value=21 Score=27.93 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=33.7
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 48 ~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLD-SGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp TCEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC-----
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 3579999999999995 89999999999999999877766554
No 270
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=45.92 E-value=22 Score=27.79 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=33.3
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-|+.++
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D~ 90 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVDVLLRKELIVREISTEDR 90 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC----C
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHHHHHHCCCeeccCCCccC
Confidence 578999999999995 89999999999999999877665443
No 271
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=45.60 E-value=33 Score=26.84 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=34.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCc
Confidence 468999999999995 89999999999999999876665443
No 272
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=45.58 E-value=66 Score=25.39 Aligned_cols=41 Identities=10% Similarity=0.321 Sum_probs=31.7
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~glv~r~~~~~d 101 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVARLLERGFIRRETHGDD 101 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeecCCCC
Confidence 3579999999999995 8999999999999999976555443
No 273
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=45.54 E-value=26 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=34.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 44 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 83 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLP-KQTVSGVCKTLAGQGLIEWQEGEQD 83 (145)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEECCCSSC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeccCCCC
Confidence 359999999999995 8899999999999999976555544
No 274
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=45.30 E-value=29 Score=27.32 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=31.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..++
T Consensus 53 ~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLD-PSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCC-HHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 468999999999995 89999999999999999766655543
No 275
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=45.28 E-value=81 Score=30.23 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--hhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRI--ATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~--a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
+-.|.++--.+.+|...|+.+++.+....++.. ..+..+....+..+|.|-.+|...|+|+.|..++.++
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 346778888888999999999999888877753 3344455566677777899999999999999998864
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.16 E-value=2.1e+02 Score=27.16 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=51.3
Q ss_pred HHHHHHHhhccHHHHHhhhhhc--CCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
.|.++|+..++|..|..++++. .........+.+.-+-.-.++|...+|+.++...++.|-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 5899999999999999988864 1222234578888888999999999999999999999876
No 277
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=44.93 E-value=16 Score=28.55 Aligned_cols=41 Identities=2% Similarity=-0.004 Sum_probs=28.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC-------
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 468999999999995 88999999999999999876666544
No 278
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=44.54 E-value=33 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=37.0
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 55 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTS-KQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 4579999999999995 88999999999999999888877653
No 279
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=44.22 E-value=26 Score=28.01 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=34.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 568999999999995 89999999999999999877766554
No 280
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=44.21 E-value=28 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=35.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..++
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 468999999999995 89999999999999999877766543
No 281
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=43.94 E-value=64 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.8
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
..++.++|++.++++ ...+-..+..|...|+|...-+
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999995 8999999999999999976653
No 282
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=43.43 E-value=37 Score=26.86 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=34.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~d 96 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVDSLEKRGLVVREMDPVD 96 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEEECTTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCC
Confidence 368999999999995 8899999999999999987665544
No 283
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.30 E-value=23 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=33.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE--EeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA--TLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a--~Id~~~ 264 (343)
..++.++||+.++++ ...+-.+|.+|...|+|.- .-++.+
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~~~d 95 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVDGLISLGLVVKLNKTIPND 95 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEESCC--CTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCcCCCCC
Confidence 468999999999995 8999999999999999976 555544
No 284
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=43.29 E-value=51 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=32.0
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
.-..++.++||+.++++ ...+-..|.+|...|+|.-
T Consensus 28 ~~~~~s~~ela~~l~is-~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIA-PSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCC-hHHHHHHHHHHHHCCCEEe
Confidence 44679999999999995 8999999999999999963
No 285
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=43.26 E-value=23 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.3
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHh
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKA 250 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~l 250 (343)
-|-+.++.+||..++++ .+++|.++..+
T Consensus 45 GYL~~~l~eia~~l~~~-~~eve~vL~~l 72 (76)
T 2k9l_A 45 GFLSKSVEEISDVLRCS-VEELEKVRQKV 72 (76)
T ss_dssp STTCCCHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCC-HHHHHHHHHHH
Confidence 58899999999999984 99999987653
No 286
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=43.24 E-value=1.2e+02 Score=25.43 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhhccHHHHHhhhhhc-----CCCCCC----------------ChHHHHHHHHHHHHHHHHhhCHHHH
Q psy1676 56 QAVLINCLLRNYLHYNLYDQADKLVKKS-----AFPENA----------------SNNEWARFHFYLGRIKAVRLEYSTA 114 (343)
Q Consensus 56 ~~~l~n~Llr~yl~~~~~~~a~~li~k~-----~~p~~~----------------~~~~~~~Y~YY~Gri~~~~~~y~~A 114 (343)
.+-+...+...+|..++|..|....+.+ .++... ....-++..|-.++.++..+++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 3456667788999999999999888752 121110 0112345566799999999999999
Q ss_pred HHHHHH
Q psy1676 115 HKNLVQ 120 (343)
Q Consensus 115 ~~~L~~ 120 (343)
...|+.
T Consensus 142 i~~Le~ 147 (167)
T 3ffl_A 142 IAILDG 147 (167)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988763
No 287
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=42.85 E-value=74 Score=27.84 Aligned_cols=122 Identities=13% Similarity=-0.040 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc--CCCCCCChHH
Q psy1676 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (343)
Q Consensus 16 ~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~--~~p~~~~~~~ 93 (343)
.+.+++-+++++...|+.+++...+-... ..+|+...... .....+...+....|...+.+. ..|.
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~-----~~~p~~~~~~~-~~~~~l~~~~~~~~a~~~l~~al~~~P~------ 217 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIP-----LQDQDTRYQGL-VAQIELLXQAADTPEIQQLQQQVAENPE------ 217 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----GGGCSHHHHHH-HHHHHHHHHHTSCHHHHHHHHHHHHCTT------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCc-----hhhcchHHHHH-HHHHHHHhhcccCccHHHHHHHHhcCCc------
Confidence 45678899999999999998887664332 22343322222 2233345666666666666543 2342
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCC
Q psy1676 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (343)
Q Consensus 94 ~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~ 153 (343)
....+|-+|.++...+++.+|...|..+++..|...... ..+.+.-+...+|+..+
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~----a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ----TRXTFQEILAALGTGDA 273 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH----HHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch----HHHHHHHHHHHcCCCCc
Confidence 344577889999999999999999999999766541111 33444555566777554
No 288
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=42.79 E-value=25 Score=27.51 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=31.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 53 ~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 92 (148)
T 3nrv_A 53 SDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC------
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCC
Confidence 489999999999995 8999999999999999976655544
No 289
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.45 E-value=27 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..|.-.+.++++.+|..||..|+.-||+.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 67888889999999999999999988875
No 290
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=42.20 E-value=49 Score=25.61 Aligned_cols=70 Identities=13% Similarity=-0.069 Sum_probs=48.1
Q ss_pred HHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHH----hhCHHHHHHHH
Q psy1676 43 RLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAV----RLEYSTAHKNL 118 (343)
Q Consensus 43 ~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~----~~~y~~A~~~L 118 (343)
.++.++...++..+ |-.+|.....+..|...+++..-. ....=.|.+|.+|.. ..|+.+|..+|
T Consensus 17 ~~~~aa~~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 17 YYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHTTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHcCCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 44455555555555 456677777788888888765211 112335678888887 89999999999
Q ss_pred HHHHhh
Q psy1676 119 VQALRK 124 (343)
Q Consensus 119 ~~A~~~ 124 (343)
..|...
T Consensus 85 ~~Aa~~ 90 (138)
T 1klx_A 85 SKACGL 90 (138)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 999885
No 291
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=41.79 E-value=2.1e+02 Score=26.16 Aligned_cols=139 Identities=20% Similarity=0.136 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHhcCCCCChhhhhhH-hHhhh-hhhhHHHHHH
Q psy1676 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQA-VLRRA-LSPYFQLTQA 175 (343)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~sa~~~~~~i~K~li~v~LL~G~iP~~~~~~~~-~l~~~-l~~Y~~L~~A 175 (343)
.|--|+-++.++.+-+|+.+...|+.+ |.=+..+-.|-.|+..++.+- .+.+. .+-|.+|+.
T Consensus 133 ~y~~~K~~l~~~~~ldAY~~vi~aLhh---------------~ArL~vie~G~~pe~tvw~qv~~i~~~iyKLyeEL~~- 196 (290)
T 3c18_A 133 RFQDGRNLFSRGNYYDAYTHVHHALHH---------------LARLSVLEKGAHPEVVVWEQARLDDPDVYKLYEQLLL- 196 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHHHHHHTTCCCCTTHHHHHHHHCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHH---------------HHHhheeccCCcCchhHHHHHHhcCHHHHHHHHHHhc-
Confidence 577899999999999999988877762 122245689999998888642 11111 112333322
Q ss_pred HHhCCHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhhcccccChHHHHHHhCCCC-HHHHHHHHHHhHHcC
Q psy1676 176 VRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPTKIAEKLGLES-PEDAEFIIAKAIRDG 254 (343)
Q Consensus 176 v~~Gdl~~f~~~l~~~~~~f~~d~~~~Lv~~l~~~v~r~~ir~i~~~ys~Isl~dIa~~l~l~s-~~e~E~ila~lI~~G 254 (343)
...++.+=-+.+=-..+.++..++ ...-+.++.-+..--...|+.+|-.--.+.. .-+.|-++-.|+..|
T Consensus 197 -s~E~lekrielllla~Ef~I~sk~--------~~~~~~Ll~~m~ek~~~wS~~Ei~~~p~~~~~~idle~iL~~Lv~k~ 267 (290)
T 3c18_A 197 -SEETLEQRIHLALIGLEHLLQSKV--------LSGGKYLFEVMRERDRPWTMHELMEESRLTELKVDLGSLVDFFIRKG 267 (290)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHTH--------HHHHHHHHHHHTTSSSCEEHHHHHHCGGGGGGHHHHHHHHHHHHHTT
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCCCHHHHhcCcccccccCCHHHHHHHHHHcC
Confidence 122222221111112222222221 2233344444444445778888877655532 358899999999999
Q ss_pred CceEEee
Q psy1676 255 VIEATLD 261 (343)
Q Consensus 255 ~I~a~Id 261 (343)
.|+-.--
T Consensus 268 lI~~~~~ 274 (290)
T 3c18_A 268 LIRISYQ 274 (290)
T ss_dssp SEEEEEE
T ss_pred CeEEecc
Confidence 9965433
No 292
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=41.49 E-value=34 Score=27.76 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=32.5
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-+..++
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~GlV~r~~~~~Dr 107 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLDQLEDKGLISRQTCASDR 107 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC------
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHHHHHHCCCEEeeCCCCCC
Confidence 4569999999999995 89999999999999999876655443
No 293
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.35 E-value=89 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=32.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
..+++.+||+.++++ ...+-..+..|...|.|...-+
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999995 8999999999999999976543
No 294
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=41.16 E-value=51 Score=25.69 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=34.7
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~d 92 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQEVQRAGLIERRTNPEH 92 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCSSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeeecCCccc
Confidence 478999999999995 8999999999999999987666544
No 295
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.79 E-value=1.9e+02 Score=26.94 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.1
Q ss_pred HHHHHHhCCHHHHHHHHHhccccccccc
Q psy1676 172 LTQAVRMGELQKFNEVLTTYGNQFRTDY 199 (343)
Q Consensus 172 L~~Av~~Gdl~~f~~~l~~~~~~f~~d~ 199 (343)
|+.++.+|++..|....++|+....+|+
T Consensus 251 Lllt~q~~~~~lF~~L~~~Y~~~l~rd~ 278 (336)
T 3lpz_A 251 LLLSVQKGSPDLFRQLKSKYEANLNELN 278 (336)
T ss_dssp HHHHHHSCCHHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcH
Confidence 5678888888889888888888877775
No 296
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=40.76 E-value=91 Score=23.08 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=32.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
..++..+||+.++++ ...+-..+..|...|+|...-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEec
Confidence 458999999999995 8899999999999999976544
No 297
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.48 E-value=35 Score=26.79 Aligned_cols=40 Identities=15% Similarity=0.362 Sum_probs=34.7
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 50 ~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d 89 (155)
T 1s3j_A 50 GSLKVSEIAERMEVK-PSAVTLMADRLEQKNLIARTHNTKD 89 (155)
T ss_dssp SEEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeecCCCCC
Confidence 468999999999995 8999999999999999987666544
No 298
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=40.38 E-value=36 Score=32.06 Aligned_cols=36 Identities=8% Similarity=0.254 Sum_probs=32.7
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
....+|-++|++.+++ |..-+-.++..|+.+|.|..
T Consensus 27 ~~~~~sr~~la~~~~l-s~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 27 QLGPVSRIDLSRLAQL-APASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp SSCSCCHHHHHHHTTC-CHHHHHHHHHHHHHHTSEEE
T ss_pred HcCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEEe
Confidence 4678999999999999 59999999999999999955
No 299
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=40.31 E-value=72 Score=25.40 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=36.2
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
-..++.++||..++++ ...+-.+|.+|...|+|.=.-|+.++
T Consensus 44 ~~~~~~~eLa~~l~~~-~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 44 PPEQSQIQLAKAIGIE-QPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp CTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCCcHHHHHHHHCcC-HHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 3456778999999995 89999999999999999888887765
No 300
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=39.97 E-value=70 Score=23.28 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=35.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~ 272 (343)
..++..+|++.++++ ..-+-..+..|...|+|...- |+......
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 468999999999995 889999999999999997532 45554443
No 301
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=39.88 E-value=24 Score=27.11 Aligned_cols=41 Identities=20% Similarity=0.414 Sum_probs=34.8
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d 85 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQRMKRDGYVMTEKNPND 85 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCeeeccCCCC
Confidence 3468999999999995 7889999999999999987666544
No 302
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.81 E-value=50 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=32.8
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 55 ~~~~t~~ela~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~d 95 (155)
T 3cdh_A 55 NDAMMITRLAKLSLME-QSRMTRIVDQMDARGLVTRVADAKD 95 (155)
T ss_dssp CSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC----
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCCc
Confidence 3579999999999995 8999999999999999976554433
No 303
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=39.58 E-value=34 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=34.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.=.-|+.++
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 50 GELPMSKIGERLMVH-PTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 468999999999995 89999999999999999888777664
No 304
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=39.33 E-value=57 Score=30.88 Aligned_cols=96 Identities=10% Similarity=0.117 Sum_probs=48.6
Q ss_pred HHHHHHHHHH-H--hhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhc-----cHHHHHhhhhhcCCCCC
Q psy1676 17 AKCYFYHSRV-H--ELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYN-----LYDQADKLVKKSAFPEN 88 (343)
Q Consensus 17 a~~~~y~~~~-~--e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~-----~~~~a~~li~k~~~p~~ 88 (343)
+..+|.++.+ + ...+....+...+ +.+...+++..+..+. .+|. .+ ++..|...+++.. +..
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~----~~Aa~~g~~~A~~~Lg----~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~ 317 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYL----DNGRAADQPRAELLLG----KLYY-EGKWVPADAKAAEAHFEKAV-GRE 317 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHH----HHHHHTTCHHHHHHHH----HHHH-HCSSSCCCHHHHHHHHHTTT-TTC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHCCCHHHHHHHH----HHHH-cCCCCCCCHHHHHHHHHHHh-CCC
Confidence 3455666655 3 2344555554333 3333333433333332 3343 33 7777777777666 433
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy1676 89 ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (343)
Q Consensus 89 ~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (343)
......+-..|+.|. ....|+.+|..+|..|...
T Consensus 318 ~~A~~~Lg~~y~~G~--g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 318 VAADYYLGQIYRRGY--LGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHHHHTTT--TSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC--CCCcCHHHHHHHHHHHHhh
Confidence 222233444555554 2456777777777776663
No 305
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=39.19 E-value=35 Score=27.14 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=33.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 65 ~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~d 104 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVE-QSTLSRALDGLQADGLVRREVDSDD 104 (162)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC--C
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEecCCCCC
Confidence 468999999999995 8899999999999999987665543
No 306
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=38.63 E-value=1.1e+02 Score=22.26 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=32.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
...+..+|++.+|++ ...+-..+..|...|.|...-+
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~ 71 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLGVLRESGIVETRRN 71 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHHHHHHTTSEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 458999999999995 7899999999999999976543
No 307
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=38.35 E-value=23 Score=28.01 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=31.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 54 ~~~~~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D~ 94 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLS-SNTLTPMLKRLEQSGWVKRERQQSDK 94 (149)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEC-------
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeCCCCCCc
Confidence 678999999999995 89999999999999999876665543
No 308
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=37.96 E-value=51 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=28.6
Q ss_pred cChHHHHHHhCCCCHHHHHHHHHHhHHcCCc
Q psy1676 226 ITPTKIAEKLGLESPEDAEFIIAKAIRDGVI 256 (343)
Q Consensus 226 Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I 256 (343)
++.++||..++++ ...+-.+|.+|...|+|
T Consensus 31 ~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSP-HSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCcCc
Confidence 8999999999995 89999999999999999
No 309
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=37.83 E-value=39 Score=23.67 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 99 FYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 99 YY~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
|-.|..+...++|.+|...|..++...|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 457889999999999999999999976654
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.42 E-value=35 Score=36.42 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
.++..++..+.++.+..++.-. |. +...+ |..|+.++..|++.+|..+|+.|-.
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~--~~----t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL--NS----DPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC--CS----SHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhc--CC----ChHHH--HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3567788889999988887533 22 12233 8999999999999999999998765
No 311
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.31 E-value=46 Score=31.64 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=32.5
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
....+|-++||+.+++ |..-+-.++..|+.+|.|..
T Consensus 50 ~~~~~sr~ela~~~gl-s~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 50 QKGPISRIDLSKESEL-APASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHCSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEe
Confidence 3578999999999999 59999999999999999965
No 312
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=37.25 E-value=55 Score=25.52 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
...++.++||..++++ ..-+-.+|.+|...|+|.-
T Consensus 20 ~~~~~~~ela~~l~vs-~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 20 KGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HSSCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEE
Confidence 3569999999999995 8899999999999999954
No 313
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=36.95 E-value=40 Score=26.17 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=34.2
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 227 TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 227 sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
+.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~ 89 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVDKLEAKGLVRRIRDSKDR 89 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 899999999995 89999999999999999887777654
No 314
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=36.71 E-value=7.3 Score=35.31 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred cccChHHHHHHh-CCCCHHHHHHHHHHhHHcCCceEEeeCC
Q psy1676 224 SRITPTKIAEKL-GLESPEDAEFIIAKAIRDGVIEATLDRE 263 (343)
Q Consensus 224 s~Isl~dIa~~l-~l~s~~e~E~ila~lI~~G~I~a~Id~~ 263 (343)
.=|++.+|++++ +++ ++++...+-.|+.+|.|..+||-.
T Consensus 223 ~Gi~~~~I~~~l~~~~-~~~v~~al~~L~~eG~IYsTiDd~ 262 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMS-VSSIKQAVDFLSNEGHIYSTVDDD 262 (270)
T ss_dssp -----------------------------------------
T ss_pred cCCCHHHHHHHhcCCC-HHHHHHHHHHHHhCCEEecccccc
Confidence 567888999998 675 899999999999999999999865
No 315
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=36.38 E-value=36 Score=26.81 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=33.1
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d 99 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLKRLQAAGLVTRTRAASD 99 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC----
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCccc
Confidence 3568999999999995 8999999999999999987665544
No 316
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=35.78 E-value=31 Score=27.62 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=33.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~D 105 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVDQLVDEGLAARSISDAD 105 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC---C
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCccc
Confidence 478999999999995 8899999999999999976665544
No 317
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=35.60 E-value=25 Score=27.96 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=32.4
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
....++.++||..++++ ...+-.+|.+|...|+|.-.-+..+
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~~Le~~Gli~r~~~~~d 100 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVNRLIKDGMVVKAMSADD 100 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHHHHHHHTSEEEC-----
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCCC
Confidence 34579999999999995 7889999999999999976555443
No 318
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=35.28 E-value=62 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=36.7
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...+++++|++.++++ ..-+-..|..|...|+|.-..++.++
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4578999999999995 88999999999999999988876654
No 319
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=34.92 E-value=1.2e+02 Score=22.69 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=36.6
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
.-.++ |..++|+.+++ |..-|...+..|..+|+|...=....|+.+..
T Consensus 39 ~g~~lps~~eLa~~lgV-Sr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGI-TRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp TTEEEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred CCCcCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 34667 99999999999 58999999999999999954221135766553
No 320
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=34.59 E-value=7.3 Score=26.48 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=10.6
Q ss_pred hhccchhHHHHHH
Q psy1676 6 SENRRTSDLIAAK 18 (343)
Q Consensus 6 ~~~~~~~d~~~a~ 18 (343)
-.|||++|.+.|+
T Consensus 24 lQNRraLDlL~a~ 36 (53)
T 1y4m_A 24 LQNRRGLDMLTAA 36 (53)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 3699999998764
No 321
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=34.59 E-value=1.5e+02 Score=22.65 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=32.1
Q ss_pred cChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeC
Q psy1676 226 ITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDR 262 (343)
Q Consensus 226 Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~ 262 (343)
++..+||..++++ ..-|-..|..|...|+|.-.-+.
T Consensus 43 ~t~~eLa~~l~~s-~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 43 IDTDALSKSLKLD-VSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp EEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeeCCc
Confidence 9999999999995 99999999999999999765443
No 322
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=34.24 E-value=39 Score=26.11 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=34.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.+
T Consensus 50 ~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d 89 (142)
T 2bv6_A 50 SPVNVKKVVTELALD-TGTVSPLLKRMEQVDLIKRERSEVD 89 (142)
T ss_dssp SEEEHHHHHHHTTCC-TTTHHHHHHHHHHTTSEEEEECSSS
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCCC
Confidence 468999999999995 7889999999999999977666543
No 323
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=34.01 E-value=76 Score=23.03 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=35.8
Q ss_pred cccChHHH----HHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEE
Q psy1676 224 SRITPTKI----AEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQS 269 (343)
Q Consensus 224 s~Isl~dI----a~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~ 269 (343)
..++.++| |..++++ ...+-.+|.+|...|+|.-.-+.....+..
T Consensus 21 ~~~~~~el~~~la~~l~is-~~tvs~~l~~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMS-TATFYDAKKFLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCcCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCEEEEecCCceEEEE
Confidence 56889999 8888995 889999999999999998777763333333
No 324
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=33.39 E-value=60 Score=24.28 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=35.9
Q ss_pred ccccChHHHHHHhC-CCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKLG-LESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l~-l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...+++++|++.++ ++ ..-+-..|..|...|.|....+..++
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 45689999999995 95 88999999999999999988776543
No 325
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=33.00 E-value=33 Score=26.99 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=31.7
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
...++.++||..++++ ...+-.+|.+|...|+|.-
T Consensus 49 ~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 49 IEALTVGQITEKQGVN-KAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HSCBCHHHHHHHHCSC-SSHHHHHHHHHHHTTSEEC
T ss_pred cCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEe
Confidence 4679999999999995 8899999999999999975
No 326
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=32.90 E-value=73 Score=23.33 Aligned_cols=38 Identities=3% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHhhcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCc
Q psy1676 218 SIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVI 256 (343)
Q Consensus 218 ~i~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I 256 (343)
.+...-.-++-.+||+++|++ -.+|.+.+-.|=.+|.|
T Consensus 27 ~LkeaG~PlkageIae~~Gvd-KKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 27 VLTEAGSPVKLAQLVKECQAP-KRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHTSCEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHcCCc
Confidence 344556788899999999996 89999999999999987
No 327
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=32.89 E-value=8.1 Score=26.46 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=10.5
Q ss_pred hhccchhHHHHHH
Q psy1676 6 SENRRTSDLIAAK 18 (343)
Q Consensus 6 ~~~~~~~d~~~a~ 18 (343)
-.|||++|.|.|+
T Consensus 26 lQNRraLD~L~a~ 38 (55)
T 1mof_A 26 LQNRRGLDLLFLK 38 (55)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 3699999998764
No 328
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=32.65 E-value=24 Score=27.35 Aligned_cols=40 Identities=5% Similarity=0.055 Sum_probs=34.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREK 264 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~ 264 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-|+.+
T Consensus 52 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 91 (127)
T 2frh_A 52 KEYYLKDIINHLNYK-QPQVVKAVKILSQEDYFDKKRNEHD 91 (127)
T ss_dssp SEEEHHHHHHHSSSH-HHHHHHHHHHHHHTTSSCCBCCSSS
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCC
Confidence 568999999999995 8899999999999999976655544
No 329
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=31.72 E-value=1.7e+02 Score=27.75 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHh--hhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhc
Q psy1676 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIA--TLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (343)
Q Consensus 14 ~~~a~~~~y~~~~~e~~~~~~~~~~~l~~~~r~a--~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~ 83 (343)
+..+.++--.+.++...|+++++......++..- .+..+....+...|.|-.+|...++|+.|..++.++
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456777777888888888888888777666432 333444555667777799999999999999998865
No 330
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=30.87 E-value=69 Score=23.30 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=30.8
Q ss_pred cccccChHHHHHHhCCCCHH-HHHHHHHHhHHcCCce
Q psy1676 222 SYSRITPTKIAEKLGLESPE-DAEFIIAKAIRDGVIE 257 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~-e~E~ila~lI~~G~I~ 257 (343)
.-...+..+||+.|+++ .. .|-..+.+|-.+|.|.
T Consensus 22 ~~g~~ta~eiA~~Lgit-~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 22 NVSDSSALNLAKNIGLT-KARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HTCCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEE
T ss_pred HcCCcCHHHHHHHcCCC-cHHHHHHHHHHHHHCCCEE
Confidence 34567889999999996 77 9999999999999996
No 331
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=30.21 E-value=84 Score=26.30 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=30.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
...|..+||+.+|+++. -+-..+..|-.+|+|.-.
T Consensus 23 ~~~s~~eia~~lgl~~~-tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRITPR-GALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCCCcH-HHHHHHHHHHHCCCEEec
Confidence 35899999999999744 799999999999999643
No 332
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.04 E-value=67 Score=23.29 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=29.2
Q ss_pred ccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 225 RITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 225 ~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
..+..+||++||++ -.++-.++-+|-.+|.+.
T Consensus 29 ~~Ta~~IAkkLg~s-K~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 29 YTTAISLSNRLKIN-KKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp EECHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHCCC-HHHHHHHHHHHHHCCCEe
Confidence 38899999999996 899999999999999985
No 333
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=29.91 E-value=1.4e+02 Score=23.46 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=30.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
..++.+++|..++++ ..-+-..|..|...|+|.-
T Consensus 53 ~~~~~~~la~~l~vs-~~tvs~~l~~Le~~Glv~r 86 (155)
T 2h09_A 53 GEARQVDMAARLGVS-QPTVAKMLKRLATMGLIEM 86 (155)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHHHHHHTTCEEE
T ss_pred CCcCHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEE
Confidence 457899999999995 8899999999999998853
No 334
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.89 E-value=43 Score=36.38 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 62 CLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 62 ~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
.++..+++.+.++.+..+..-. |. +...+ |..|++++..+++.+|..+|..|-.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~--~~----~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL--NS----DPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS--CC----CHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc--cC----CcHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 4556677777777777765422 21 12222 8899999999999999999998754
No 335
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=29.79 E-value=71 Score=24.98 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=30.2
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCC-c
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGV-I 256 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~-I 256 (343)
-..+|+.+||..-|+. ...++..++.++..|. +
T Consensus 30 ~~G~sleeIA~~R~L~-~~TI~~Hl~~~v~~G~~l 63 (122)
T 3iuo_A 30 DRKVALDDIAVSHGLD-FPELLSEVETIVYSGTRI 63 (122)
T ss_dssp HTTCCHHHHHHHTTCC-HHHHHHHHHHHHHTTCCC
T ss_pred HcCCCHHHHHHHcCCC-HHHHHHHHHHHHHcCCcc
Confidence 3789999999999995 9999999999999996 6
No 336
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=29.78 E-value=2.5e+02 Score=24.12 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=38.2
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
+-.+|+..++|+.+|+ |..-|-.-+..|-.+|+|. +.+..|+++..
T Consensus 46 pG~~L~e~~La~~lgV-Sr~~VReAL~~L~~~Glv~--~~~~~G~~V~~ 91 (237)
T 3c7j_A 46 SGTALRQQELATLFGV-SRMPVREALRQLEAQSLLR--VETHKGAVVAP 91 (237)
T ss_dssp TTCBCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEE--EETTTEEEECC
T ss_pred CcCeeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEE--EeCCCceEEec
Confidence 4579999999999999 5888999999999999995 45667877643
No 337
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=29.61 E-value=52 Score=26.42 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=33.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 61 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISR-APDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC----CTHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEeecCCCCCC
Confidence 478999999999995 78999999999999999888877665
No 338
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=29.47 E-value=51 Score=24.52 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=31.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
.-|+-.+|+.+++++ ...+-.+|-+|...|+|+-.
T Consensus 35 ~gi~qkeLa~~~~l~-~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLP-LTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp TCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEe
Confidence 368899999999996 88999999999999999733
No 339
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=29.40 E-value=1.4e+02 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
..++-.+||..+|+ +.+.+-.++.+|-.+|.|.- .+|.+...+
T Consensus 177 ~~~t~~~lA~~lg~-sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 219 (227)
T 3dkw_A 177 IPVAKQLVAGHLSI-QPETFSRIMHRLGDEGIIHL----DGREISILD 219 (227)
T ss_dssp CCSCTHHHHHHTTS-CHHHHHHHHHHHHHHTSEEE----SSSCEEESC
T ss_pred ecCCHHHHHHHhCC-CHHHHHHHHHHHHHCCcEEe----cCCEEEEeC
Confidence 46788999999999 49999999999999999952 345555543
No 340
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=29.37 E-value=1.7e+02 Score=22.30 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.8
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
...+++++|+..+|++ ...+-..+..|...|+|...
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEE
Confidence 3568999999999995 89999999999999999653
No 341
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.32 E-value=80 Score=30.05 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhccHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy1676 60 INCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (343)
Q Consensus 60 ~n~Llr~yl~~~~~~~a~~li~k~~~p~~~~~~~~~~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (343)
...+.+.|++.|+++.|..++.+..-. ..+..+.+..+.-.-++++..+||..|..++..|-.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345688899999999999888764111 122357788888888888899999999999888866
No 342
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=29.02 E-value=41 Score=29.79 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=31.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
..+++++||+.++++ ..-+-.++.+|...|+|...
T Consensus 165 ~~~s~~eLA~~lgls-ksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 165 KGTGITELAKMLDKS-EKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp TCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe
Confidence 579999999999995 88999999999999999754
No 343
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.80 E-value=1.1e+02 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhCCcc
Q psy1676 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (343)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~~~~ 128 (343)
..|.-.+.++++..|..||..|+.-|++.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 67888899999999999999999988864
No 344
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=28.72 E-value=3.2e+02 Score=24.48 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHhhccHHHHHhhhhhcC-CCCCCChHHHHHH
Q psy1676 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-FPENASNNEWARF 97 (343)
Q Consensus 19 ~~~y~~~~~e~~~~~~~~~~~l~~~~r~a~~~~~~~~~~~l~n~Llr~yl~~~~~~~a~~li~k~~-~p~~~~~~~~~~Y 97 (343)
+.|=.+.++-..+++.++...+- .+....++.-..-+...+=..+-..|+++.|...+.++. -|. .+ .....=
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~----~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~-~P-~~~~da 210 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVK----SAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA-GE-ACARAI 210 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHT----TGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT-TT-TTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH----HhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC-Cc-cccHHH
Confidence 55667777778888888876663 222222232122344445677889999999999998763 220 01 113334
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHhhCCc
Q psy1676 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (343)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~~~ 127 (343)
.|+.|.+...+|+..+|...|..++...|.
T Consensus 211 ~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 211 AWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 689999999999999999999999996664
No 345
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=28.66 E-value=34 Score=25.50 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=37.4
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
.-.++ |..++|+.+++ |..-|-..+..|...|+|.. .+..|+.+..
T Consensus 31 ~g~~lps~~eLa~~~~v-Sr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGV-AAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp TTSBCCCHHHHHHHSSS-CTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred CcCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 34678 89999999999 58899999999999999953 4556776654
No 346
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.60 E-value=2.3e+02 Score=22.95 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=34.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..+|-.+||..+|++ .+.+-.++.+|..+|.|. ++ +|.+...
T Consensus 162 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~--~~--~~~i~i~ 203 (216)
T 4ev0_A 162 FQIRHHELAALAGTS-RETVSRVLHALAEEGVVR--LG--PGTVEVR 203 (216)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE--EE--TTEEEES
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--ec--CCEEEEe
Confidence 578999999999994 999999999999999995 22 4555554
No 347
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=28.30 E-value=36 Score=26.48 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=33.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCC
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDRE 263 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~ 263 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-+..
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~~L~~~glv~r~~~~~ 91 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLKRMEQQGLITRKRSEE 91 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHHHHHHHTSEECCBCSS
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHHHHHHCCCEEeccCCC
Confidence 378999999999995 899999999999999997665543
No 348
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=28.22 E-value=74 Score=23.21 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=30.7
Q ss_pred hcccccChHHHHHHh-CCCCHHHHHHHHHHhHHcCCc
Q psy1676 221 ASYSRITPTKIAEKL-GLESPEDAEFIIAKAIRDGVI 256 (343)
Q Consensus 221 ~~ys~Isl~dIa~~l-~l~s~~e~E~ila~lI~~G~I 256 (343)
..-++.-+.|+++.+ +. .+-+|-.+|..||.+|.+
T Consensus 17 ~~KskfYf~D~~k~~P~~-k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDM-KQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHSSCEEHHHHHHHCTTS-CHHHHHHHHHHHHHTTSE
T ss_pred cccccchHHHHHHHcccc-CHHHHHHHHHHHHhcCce
Confidence 355788899999998 66 599999999999999999
No 349
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=27.87 E-value=69 Score=29.83 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=32.4
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
...+|-++|++.+++ |..-+-.++..|+.+|.|..
T Consensus 31 ~~~~sr~~la~~~gl-s~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 31 KSPVSRVELAEELGL-TKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp HSCBCHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEE
T ss_pred cCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEe
Confidence 678999999999999 59999999999999999965
No 350
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.78 E-value=49 Score=28.07 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=33.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|...|+|.-.-++.++
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 468999999999995 89999999999999999888776554
No 351
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=27.67 E-value=96 Score=26.47 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=32.7
Q ss_pred hhcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 220 GASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 220 ~~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
......++.++||+.++++ ...+-..|.+|..+|+|.-
T Consensus 15 ~~~~~~~~~~~lA~~l~vs-~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 15 GTRHNKITNKEIAQLMQVS-PPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp TSSCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEE
Confidence 3345679999999999995 8999999999999999953
No 352
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.34 E-value=24 Score=27.76 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=26.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+-.+|.+|..+|+|.-.-|+.++
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 578999999999995 88899999999999999765555443
No 353
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=27.00 E-value=2.2e+02 Score=23.96 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=39.2
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
+-.+||-.++|+.+|+ |-.-|-.-+..|-.+|+|. +.+..|+.+..
T Consensus 36 pG~~L~E~~La~~lgV-SRtpVREAl~~L~~eGlv~--~~~~~G~~V~~ 81 (222)
T 3ihu_A 36 PGQRLVETDLVAHFGV-GRNSVREALQRLAAEGIVD--LQRHRGAVIRR 81 (222)
T ss_dssp TTCEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--ECSTTCEEECC
T ss_pred CCCccCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEE--EecCCCeEEec
Confidence 4589999999999999 5888999999999999995 55778888764
No 354
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=25.67 E-value=2.3e+02 Score=21.90 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccCc
Q psy1676 202 KLILRLRHNVIKTAIRSIGASYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKESA 273 (343)
Q Consensus 202 ~Lv~~l~~~v~r~~ir~i~~~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~~ 273 (343)
.+-+++...+...-+.--...-.+| |-.++|..+|+ |..-|..-+..|..+|+|. .-+..|+.+.....
T Consensus 14 PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gV-Sr~tVReAl~~L~~eGlv~--~~~g~G~~V~~~~~ 83 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGV-NPNTVSKAYQELERQEVII--TVKGKGTFIANQTD 83 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EETTTEEEECCCSS
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCC-CHHHHHHHHHHHHHCCcEE--EEcCcEEEEeCCch
Confidence 3444444433222222233455899 68899999999 5899999999999999995 55778988865443
No 355
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=25.35 E-value=1.6e+02 Score=24.32 Aligned_cols=41 Identities=29% Similarity=0.304 Sum_probs=33.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCC-ceEEeeCCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGV-IEATLDREKGYMQ 268 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~-I~a~Id~~~g~v~ 268 (343)
..+|.+++|+.+++ |..-+..-|..|-..|. |.+. ..||..
T Consensus 35 ~~~s~~eLa~~l~v-S~~Ti~rdi~~L~~~G~~I~~~---~~Gy~l 76 (187)
T 1j5y_A 35 EPVSGAQLAEELSV-SRQVIVQDIAYLRSLGYNIVAT---PRGYVL 76 (187)
T ss_dssp SCBCHHHHHHHHTS-CHHHHHHHHHHHHHHTCCCEEE---TTEEEC
T ss_pred CCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEE---CCEEEE
Confidence 34999999999999 58899999999999999 8762 245543
No 356
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=25.25 E-value=2.5e+02 Score=24.80 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=38.6
Q ss_pred hccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccC
Q psy1676 221 ASYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272 (343)
Q Consensus 221 ~~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~ 272 (343)
..-.+| |-.++|+.+|+ |-.-|-.-+..|..+|+|. .-+..|+.+....
T Consensus 48 ~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~--~~~g~G~~V~~~~ 97 (272)
T 3eet_A 48 PPHTRLPSQARIREEYGV-SDTVALEARKVLMAEGLVE--GRSGSGTYVRERP 97 (272)
T ss_dssp CTTSBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--ECCC--EEECCCC
T ss_pred CCcCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEE--EecCceEEEecCC
Confidence 344789 79999999999 5889999999999999984 4566788877654
No 357
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=25.20 E-value=1.9e+02 Score=21.87 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=31.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEe
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATL 260 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~I 260 (343)
...+..+|++.++++ ...+-..+..|...|+|...-
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHHHHTTTTSEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEEEE
Confidence 357889999999995 899999999999999997654
No 358
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=25.12 E-value=68 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=28.3
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
..++.++||..++++ ...+=.+|.+|..+|+|+ .-+..++
T Consensus 51 ~~~t~~eLa~~l~~~-~~tvsr~v~~Le~~glVr-~~~~~Dr 90 (148)
T 4fx0_A 51 IDLTMSELAARIGVE-RTTLTRNLEVMRRDGLVR-VMAGADA 90 (148)
T ss_dssp ---CHHHHHHHHTCC-HHHHHHHHHHHHHTTSBC--------
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEE-eeCCCCC
Confidence 358999999999996 889999999999999995 4455443
No 359
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=25.00 E-value=1.7e+02 Score=22.09 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=33.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
..++.++||..+|++ ...+-..+..|...|.|...-+
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEec
Confidence 567999999999995 8899999999999999987665
No 360
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=24.96 E-value=1.3e+02 Score=22.48 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=30.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a 258 (343)
..++++++|+.++++ ..-+-..|..|...|.|.-
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 468999999999995 8999999999999999954
No 361
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.73 E-value=1.2e+02 Score=22.40 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=34.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEee--CCCceEEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLD--REKGYMQS 269 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id--~~~g~v~~ 269 (343)
..++..+||+.+|++ ...|-..+..|...|+|...-. +..|+.+.
T Consensus 32 ~~~s~~eLa~~lgvs-~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 32 TEMTDEEIANQLNIK-VNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp SCBCHHHHHHTTTSC-HHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 468999999999995 8999999999999999975421 34564443
No 362
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.58 E-value=75 Score=25.92 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
..++-.+||..+|++ .+.+-.++.+|..+|.|.
T Consensus 163 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 163 IKITRQEIGRIVGCS-REMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 368899999999994 999999999999999995
No 363
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=24.46 E-value=2.7e+02 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=39.1
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
+-.+|+-.++|+.+|+ |-.-|-.-+..|-.+|+|. +.+..|+.+..
T Consensus 48 pG~~L~e~~La~~lgV-SRtpVREAL~~L~~eGlv~--~~~~~G~~V~~ 93 (239)
T 2hs5_A 48 PGARLSEPDICAALDV-SRNTVREAFQILIEDRLVA--HELNRGVFVRV 93 (239)
T ss_dssp TTCEECHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EETTTEEEECC
T ss_pred CcCEeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEE--EeCCCeeEEeC
Confidence 4479999999999999 5888999999999999995 56777888764
No 364
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=24.41 E-value=76 Score=26.50 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=30.3
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
..++-.+||..+|+ +.+.+-.++.+|..+|.|.
T Consensus 174 ~~~t~~~iA~~lg~-sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 174 LPLGTQDIMARTSS-SRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp ECCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHhCC-cHHHHHHHHHHHHHCCcEE
Confidence 46889999999999 4999999999999999995
No 365
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=24.24 E-value=2.6e+02 Score=24.26 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=40.8
Q ss_pred hhccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEccC
Q psy1676 220 GASYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKES 272 (343)
Q Consensus 220 ~~~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~~ 272 (343)
...-.+| |-.++|+.+++ |-.-|..-+..|..+|+|.. +..|+.+....
T Consensus 30 ~~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~~ 79 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEV-ARETVRQALRELLIDGRVER---RGRTTVVARPK 79 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEE---ETTEEEECCCC
T ss_pred CCCCCcCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEe---CCCEEEEccCc
Confidence 4445789 78999999999 58899999999999999964 78888876543
No 366
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=24.01 E-value=2.3e+02 Score=24.37 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=37.8
Q ss_pred hccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 221 ASYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 221 ~~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
..-.+| |-.++|+.+|+ |-.-|-.-+..|..+|+|.. -+..|+.+...
T Consensus 28 ~~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~~ 76 (236)
T 3edp_A 28 KTGMLMPNETALQEIYSS-SRTTIRRAVDLLVEEGLVVR--KNGVGLYVQPK 76 (236)
T ss_dssp CCCC--CCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEE--ETTTEEEECCC
T ss_pred CCcCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEE--ECCceEEEccC
Confidence 345789 69999999999 58899999999999999953 57788887654
No 367
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=23.98 E-value=2.5e+02 Score=21.74 Aligned_cols=42 Identities=7% Similarity=0.012 Sum_probs=36.4
Q ss_pred ccccChHHHHHHh-CCCCHHHHHHHHHHhHHcCCceEEeeCCCc
Q psy1676 223 YSRITPTKIAEKL-GLESPEDAEFIIAKAIRDGVIEATLDREKG 265 (343)
Q Consensus 223 ys~Isl~dIa~~l-~l~s~~e~E~ila~lI~~G~I~a~Id~~~g 265 (343)
...+++++|++.+ +++ ..-+-..|..|...|+|.-..+..++
T Consensus 46 ~g~~~~~eLa~~l~gis-~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVS-EXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCC-HHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCC-HHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 4678999999999 695 89999999999999999988876554
No 368
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.77 E-value=56 Score=28.78 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=38.3
Q ss_pred hcccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 221 ASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 221 ~~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
......+..+||..++++ +.+|+..+.+|...|.|. .+ .+|.|...+
T Consensus 174 l~~~~~t~~~la~~~~l~-~~~V~~~l~~L~~~~~v~-~~--~~~~~~~~~ 220 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLK-EREVREKISEMARFVPVK-II--NDNTVVLDE 220 (232)
T ss_dssp HHSSEEEHHHHHHHHTCC-HHHHHHHHHHHTTTSCEE-EE--TTTEEEECH
T ss_pred HhcCCCCHHHHHHHhCcC-HHHHHHHHHHHHhcCCeE-Ee--cCCeEEecH
Confidence 345788999999999996 999999999999999997 22 356666543
No 369
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=23.65 E-value=70 Score=24.27 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=31.9
Q ss_pred ccChHHHHHHh-CCCCHHHHHHHHHHhHHcCCceEEee
Q psy1676 225 RITPTKIAEKL-GLESPEDAEFIIAKAIRDGVIEATLD 261 (343)
Q Consensus 225 ~Isl~dIa~~l-~l~s~~e~E~ila~lI~~G~I~a~Id 261 (343)
++++++|++.+ |++ ..-+-..+..|...|.|.-..+
T Consensus 42 ~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 42 RQNFNDIRSSIPGIS-STILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp CBCHHHHHHTSTTCC-HHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCHHHHHHHccCCC-HHHHHHHHHHHHHCCCEEEeec
Confidence 46699999999 895 8899999999999999987666
No 370
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=23.63 E-value=1.1e+02 Score=23.54 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=31.4
Q ss_pred cccChHHHHHHh--CCCCHHHHHHHHHHhHHcCCceE
Q psy1676 224 SRITPTKIAEKL--GLESPEDAEFIIAKAIRDGVIEA 258 (343)
Q Consensus 224 s~Isl~dIa~~l--~l~s~~e~E~ila~lI~~G~I~a 258 (343)
.+++.++||..+ ++ |...|-..|..|...|+|..
T Consensus 26 g~~s~~eLA~~l~~gi-S~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 26 GNGSPKELEDRDEIRI-SKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp SCBCHHHHHTSTTCCS-CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCEEe
Confidence 589999999999 88 59999999999999999976
No 371
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=23.55 E-value=69 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.3
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHh
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKA 250 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~l 250 (343)
-|-+.|+++|+..++++ .+++|.++..+
T Consensus 36 GYL~~~l~eia~~l~~~-~~eve~vL~~i 63 (130)
T 2k9m_A 36 GFLSKSVEEISDVLRCS-VEELEKVRQKV 63 (130)
T ss_dssp SSBSSCHHHHHHHTTCC-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCC-HHHHHHHHHHH
Confidence 47899999999999984 99999988754
No 372
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=23.45 E-value=82 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=29.8
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
..++-.+||..+|++ .+.+-.++.+|..+|.|.
T Consensus 162 ~~~t~~~lA~~lG~s-r~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 162 VDFTVEEIANLIGSS-RQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp ECCCHHHHHHHHCSC-HHHHHHHHHHHHHTTSSE
T ss_pred ccCCHHHHHHHhCCc-HHHHHHHHHHHHHCCcEE
Confidence 357889999999994 999999999999999994
No 373
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=23.36 E-value=81 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=34.7
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
..++-.+||..+|+ +.+.+-.++.+|..+|.|. ++ +|.+...+
T Consensus 192 ~~lt~~~lA~~lG~-sr~tvsR~l~~L~~~GlI~--~~--~~~i~I~d 234 (243)
T 3la7_A 192 LKLSHQAIAEAIGS-TRVTVTRLLGDLREKKMIS--IH--KKKITVHK 234 (243)
T ss_dssp SCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EE--TTEEEECC
T ss_pred ccCCHHHHHHHHCC-cHHHHHHHHHHHHHCCCEE--Ec--CCEEEECC
Confidence 46788999999999 4999999999999999996 22 45555543
No 374
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=23.25 E-value=1.5e+02 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEE
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEAT 259 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~ 259 (343)
..+++++|++.++++ ..-+-.++..|...|+|.-.
T Consensus 22 ~~~~~~ela~~~gl~-~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMS-VSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp SCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEC
Confidence 369999999999995 88999999999999999653
No 375
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=22.97 E-value=2.9e+02 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=38.4
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
.-.+| |-.++|+.+|+ |..-|..-+..|..+|+|. .-+..|+.+..
T Consensus 30 ~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~G~i~--~~~g~G~~V~~ 76 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGI-SRMTVRQALSNLVNEGLLY--RLKGRGTFVSK 76 (243)
T ss_dssp TTCBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--ECTTSCEEECC
T ss_pred CcCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcEE--EeCCCeEEEeC
Confidence 44789 68999999999 5889999999999999995 45677877754
No 376
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.71 E-value=1e+02 Score=22.18 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcccccChHHHHHHhCC--------C--CHHHHHHHHHHhHHcCCce
Q psy1676 211 VIKTAIRSIGASYSRITPTKIAEKLGL--------E--SPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 211 v~r~~ir~i~~~ys~Isl~dIa~~l~l--------~--s~~e~E~ila~lI~~G~I~ 257 (343)
|+..-|.-.-..+..+|++.|...|++ + |.++++..+.+++.+|.+.
T Consensus 8 v~w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 8 RSLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 444444443345589999999888753 1 5699999999999999883
No 377
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=22.26 E-value=2.5e+02 Score=23.70 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=38.8
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
+-.+| |-.++|+.+|+ |-.-|-.-+..|..+|+|. +-+..|+.+..
T Consensus 27 pG~~LPsE~eLa~~~gV-SR~tVReAL~~L~~eGlv~--~~~g~G~~V~~ 73 (239)
T 1hw1_A 27 PGTILPAERELSELIGV-TRTTLREVLQRLARDGWLT--IQHGKPTKVNN 73 (239)
T ss_dssp TTSBCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE--EETTEEEEECC
T ss_pred CCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEE--EecCCCcEeeC
Confidence 45899 59999999999 5888999999999999995 56778887754
No 378
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=22.12 E-value=1.1e+02 Score=20.51 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred ccccChHHHHHHhCCCCHHHHHHHHHHhHH
Q psy1676 223 YSRITPTKIAEKLGLESPEDAEFIIAKAIR 252 (343)
Q Consensus 223 ys~Isl~dIa~~l~l~s~~e~E~ila~lI~ 252 (343)
+.-.|+.+||..+|++ ..-|...+.+++.
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 3789999999999995 8899988888765
No 379
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.61 E-value=68 Score=26.14 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=29.9
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
..++-.+||..+|++ .+.+-.++.+|..+|.|.
T Consensus 138 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 138 VTVSHEEIADATASI-RESVSKVLADLRREGLIA 170 (195)
T ss_dssp EECCHHHHHHTTTSC-HHHHHHHHHHHHHHTSEE
T ss_pred ccCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 357889999999994 999999999999999995
No 380
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=21.19 E-value=3.3e+02 Score=22.00 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.4
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
-.++-.+||..+|++ .+.+-.++.+|..+|.|.- .+|.+...
T Consensus 168 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~~----~~~~i~i~ 209 (220)
T 3dv8_A 168 LKITHETIANHLGSH-REVITRMLRYFQVEGLVKL----SRGKITIL 209 (220)
T ss_dssp ECCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred ecCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEe----CCCEEEEe
Confidence 478889999999994 9999999999999999952 24555554
No 381
>1w9r_A CBPA-R2, choline binding protein A; receptor, polymeric immunoglobulin receptor, PIGR, adhesion, invasion, pathogenesis; NMR {Streptococcus pneumoniae}
Probab=21.01 E-value=1.1e+02 Score=23.44 Aligned_cols=34 Identities=44% Similarity=0.665 Sum_probs=28.5
Q ss_pred CCCCCCCCc-chhhHHHHHHhhHhhHHHHHHhccc
Q psy1676 304 RYPPKSYGK-DLESAEERREREQQDLELAKEMAEE 337 (343)
Q Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (343)
.||.+.|.. +|+-||..-+-.+.|+||.++-+-+
T Consensus 33 NyptnTYktLEleiAEsdveVkkAElelvkeeak~ 67 (119)
T 1w9r_A 33 NYPTNTYKTLELEIAESDVEVKKAELELVKEEAKE 67 (119)
T ss_dssp STTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 499999954 8888999888888999999986653
No 382
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=20.97 E-value=94 Score=25.92 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=34.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..++-.+||..+|++ .+.+-.++.+|..+|.|.- + +|.+...
T Consensus 179 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~--~--~~~i~i~ 220 (232)
T 2gau_A 179 IYLSREELATLSNMT-VSNAIRTLSTFVSERMLAL--D--GKRIKII 220 (232)
T ss_dssp CCCCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEE--E--TTEEEES
T ss_pred cccCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEee--C--CCEEEEe
Confidence 568899999999995 9999999999999999952 2 3455544
No 383
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=20.90 E-value=99 Score=25.21 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=34.2
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..++-.+||..+|++ .+.+-.++.+|..+|.|. ++ +|.+...
T Consensus 145 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~ 186 (202)
T 2zcw_A 145 LKATHDELAAAVGSV-RETVTKVIGELAREGYIR--SG--YGKIQLL 186 (202)
T ss_dssp EECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEES
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--eC--CCEEEEe
Confidence 468889999999994 999999999999999996 22 3555554
No 384
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=20.89 E-value=99 Score=25.18 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=29.8
Q ss_pred ccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 225 RITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 225 ~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
.++-.+||..+|+ +.+.+-.++.+|..+|.|.
T Consensus 167 ~~t~~~iA~~lg~-sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGC-SRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCC-cHHHHHHHHHHHHHCCcEE
Confidence 6888999999999 5999999999999999995
No 385
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=20.84 E-value=98 Score=25.71 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=34.1
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
..++-.+||..+|++ .+.+-.++.+|..+|.|.- .+|.+...
T Consensus 176 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~----~~~~i~i~ 217 (227)
T 3d0s_A 176 HDLTQEEIAQLVGAS-RETVNKALADFAHRGWIRL----EGKSVLIS 217 (227)
T ss_dssp CCCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred CCCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEEe----cCCEEEEc
Confidence 357899999999994 9999999999999999952 23555554
No 386
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.43 E-value=1e+02 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
..++-.+||..+|++ .+.+-.++.++..+|.|.
T Consensus 166 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 166 LGLNTEEIALMLGTT-RQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp CSSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEE
Confidence 468889999999994 999999999999999984
No 387
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=20.38 E-value=1e+02 Score=25.56 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=29.6
Q ss_pred ccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 225 RITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 225 ~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
.++-.+||..+|+ +.+.+-.++.+|..+|.|.
T Consensus 187 ~lt~~~lA~~lg~-sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGC-SREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCC-cHHHHHHHHHHHHHCCCEE
Confidence 5788999999999 4999999999999999995
No 388
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.34 E-value=2.8e+02 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=39.4
Q ss_pred ccccc-ChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 222 SYSRI-TPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 222 ~ys~I-sl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
.-.+| |-.++|+.+|+ |..-|..-+..|..+|.|. ..+..|+.+...
T Consensus 25 ~g~~lPse~~La~~~~v-Sr~tvr~Al~~L~~~g~i~--~~~g~G~~V~~~ 72 (239)
T 3bwg_A 25 QGDKLPVLETLMAQFEV-SKSTITKSLELLEQKGAIF--QVRGSGIFVRKH 72 (239)
T ss_dssp TTCBCCCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEE--EETTTEEEECCC
T ss_pred CCCCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEE--EeCCceEEEecC
Confidence 44789 69999999999 5889999999999999995 457788887644
No 389
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=20.30 E-value=1.7e+02 Score=22.42 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=29.0
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCce
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE 257 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~ 257 (343)
.-.+..+++..++++ ..++..++..+...|.|.
T Consensus 19 ~p~~~~~la~~~~~~-~~~~~~~l~~l~~~G~l~ 51 (121)
T 2pjp_A 19 EPWWVRDLAKETGTD-EQAMRLTLRQAAQQGIIT 51 (121)
T ss_dssp SCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 345788999999995 999999999999999884
No 390
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=20.22 E-value=2.1e+02 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=39.4
Q ss_pred cccccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEc
Q psy1676 222 SYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSK 270 (343)
Q Consensus 222 ~ys~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~ 270 (343)
+-.+|+-.++|+.+|+ |-.-|-.-+..|-.+|+|. +-+..|+.+..
T Consensus 32 pG~~L~e~~La~~lgV-SRtpVREAL~~L~~eGlv~--~~~~~G~~V~~ 77 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGI-SFTPVRDALLQLATEGLVK--VVPRVGFFVTD 77 (218)
T ss_dssp TTCEECHHHHHHHHTC-CHHHHHHHHHHHHHHTSEE--EETTTEEEECC
T ss_pred CCCEeCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEE--EeCCCceEEcC
Confidence 4489999999999999 5888999999999999994 55778888765
No 391
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.02 E-value=1e+02 Score=25.89 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=34.6
Q ss_pred cccChHHHHHHhCCCCHHHHHHHHHHhHHcCCceEEeeCCCceEEEcc
Q psy1676 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKGYMQSKE 271 (343)
Q Consensus 224 s~Isl~dIa~~l~l~s~~e~E~ila~lI~~G~I~a~Id~~~g~v~~~~ 271 (343)
..++-.+||..+|++ .+.+-.++.++..+|.|. ++ +|.+...+
T Consensus 185 ~~~t~~~lA~~lG~s-r~tvsR~l~~l~~~glI~--~~--~~~i~I~d 227 (232)
T 1zyb_A 185 FKVKMDDLARCLDDT-RLNISKTLNELQDNGLIE--LH--RKEILIPD 227 (232)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSCE--EE--TTEEEESC
T ss_pred ecCCHHHHHHHhCCC-hhHHHHHHHHHHHCCCEE--ec--CCEEEEeC
Confidence 468899999999994 999999999999999995 22 35555443
Done!