RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1676
         (343 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 69.4 bits (170), Expect = 9e-16
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 207 LRHNVIKTAIRSIGASYSRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIEATLDREKG- 265
           L   VI+  + S    Y+ IT  ++   L +     AE I ++ I +G +   +D+  G 
Sbjct: 12  LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGI 70

Query: 266 -YMQSKESAD 274
            + +++E++ 
Sbjct: 71  VHFETREASG 80


>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 60

 Score = 28.9 bits (65), Expect = 0.13
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE---ATLDREK 264
           +R   T+IA+KLG+ S       +      G+IE     ++ +K
Sbjct: 16  ARTPFTEIAKKLGI-SETAVRKRVKALEEKGIIEGYTIKINPKK 58


>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 60

 Score = 28.8 bits (65), Expect = 0.13
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE---ATLDREK 264
            +    +I++  GL +       I K    GVI+   A +D E 
Sbjct: 16  GKAPLREISKITGL-AESTIHERIRKLRESGVIKKFTAIIDPEA 58


>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli
           [TaxId: 562]}
          Length = 63

 Score = 28.5 bits (64), Expect = 0.22
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE---ATLDREK-GY 266
           +R    ++A++ G+ SPE     + K  + G+I      +  ++ GY
Sbjct: 18  ARTAYAELAKQFGV-SPETIHVRVEKMKQAGIITGARIDVSPKQLGY 63


>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
           {Escherichia coli [TaxId: 562]}
          Length = 366

 Score = 28.7 bits (62), Expect = 1.2
 Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 1/144 (0%)

Query: 19  CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADK 78
                       +  +           +   +   +  +      +  +        A  
Sbjct: 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 234

Query: 79  LVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQ 138
            ++ +A PE A+N+        + R + +  E+  A   L +    A     +       
Sbjct: 235 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294

Query: 139 KLAVVVELLLGDIPD-RQIFRQAV 161
            L   +    G   D +++   A+
Sbjct: 295 LLLNQLYWQAGRKSDAQRVLLDAL 318


>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus
           subtilis [TaxId: 1423]}
          Length = 63

 Score = 26.1 bits (58), Expect = 1.4
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 224 SRITPTKIAEKLGLESPEDAEFIIAKAIRDGVIE---ATLDREK 264
           SR++  ++  K+ L  P      + +    G+I+     +D++K
Sbjct: 18  SRLSMRELGRKIKLSPPS-VTERVRQLESFGIIKQYTLEVDQKK 60


>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
           {Escherichia coli [TaxId: 562]}
          Length = 167

 Score = 25.4 bits (55), Expect = 8.3
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 213 KTAIRSIGASYSRITPTKIAEKLGL---ESPEDAEFIIAKAI 251
           +T  R      +      + +   L   ++ + AE +   AI
Sbjct: 116 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,225,002
Number of extensions: 56153
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 14
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)